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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-003255

Length: 1,056

Sequence [FASTA format sequence]
CCTCGCCGGC ACTGCCCCCT CTCAGGATGA AGGACCCAGA CCCTTCCCAG GTCTATCGGC
CTGATATGGA CCCAGAGGCG GCCAAAGACA AGGGCAGCTT CCGAAACTAC ACGTCTGGCC
CGCTGCTGGA CCGGGTCTTC CGCACCTACA AGCTGATGCA CACGTGGCAG ACCGTGGACT
TCGTCAGGAA GAAGCACGCC CAGTTCGGGG GCTTCTCCTA CAAGAGAATG ACTGTCTTGG
AGGCCGTGGA CATGCTAGAC GGGCTGGTGG ACGAGTCCGA CCCCGACGTG GACTTCCCCA
ACTCCTTCCA CGCCTTCCAG ACGGCCGAGG GCATCCGGAA GGCCCACCCT GACAAAGACT
GGTTCCACCT CGTCGGGCTC CTGCATGACC TGGGGAAGGT CCTGGTTCTG GCAGGGGAAC
CCCAGTGGGC CGTCGTTGGA GACACCTTCC CTGTGGGCTG CCGTCCGCAG GCCTCTGTGG
TTTTCTGCGA CTCTACCTTC CAGGATAACC CTGACCTTCA GGACCCTGTC TACAGCACAG
AGCTTGGCAT GTACCAGCCC CACTGTGGGC TCGAGAATGT CCTGATGTCC TGGGGCCACG
ATGAGTACAT GTACCAGATG ATGAAGTTCA ACAAATTCTC CCTCCCAGGA GAGGCCTTCT
ACATCATCCG CTTCCACTCC TTCTACCCGT GGCACACGGG CGGCGACTAC CGGCAACTGT
GCAACGAGCA GGACCTGGCC ATGCTGCCCT GGGTGCAGGA GTTCAACAAG TTCGATCTCT
ACACCAAGGG CTCCGACCTG CCGGACGTGG ACGAGCTGCG GCCCTACTAC CAGGGGCTCA
TTGACAAGTA CTGCCCCGGT GTCCTGTGCT GGTGACCGAC CTGTCCACCT GCCCAAGCCT
GGCTGGGTAC CCCGGGTGAC AGTCGCTGTC AGGCACAGGG ATGACCCAAC GCGGCCTTTC
CAGGGGTCCC CACAGGCCCA CCTGCACTCC CTGCCCGGTT GGCCCCCATC CCAGGGGCCA
TAAAAGCTCG AAACAAAAAA AAAAAAAAAA AAAAAA


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinMIOXinositol oxygenase [Homo sapiens]. 548e-156O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinMioxinositol oxygenase [Mus musculus]. 535e-152O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC481189PREDICTED: similar to Inositol oxygenase (Myo-inositol oxygenase) (Aldehyde reductase-like 6) (Renal-specific oxidoreductase) (Kidney-specific protein 32) [Canis familiaris]. 544e-155O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinMIOXinositol oxygenase [Bos taurus]. 555e-158O
Contig/Assembly ProteinLOC100337462PREDICTED: inositol oxygenase-like [Bos taurus]. 1511e-36O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinMIOXinositol oxygenase [Sus scrofa]. 609e-175O


Assembly Members: 4      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
KDN010055E12KDN01_0055_E12.bFS674829 
KDN010058A04KDN01_0058_A04.bFS675016 
KDN010059H08KDN01_0059_H08.bFS675166 AK400525
KDN010084G05KDN01_0084_G05.bFS677129 

  

SNPs: 2      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
222A200.500WNAAG/K
G200.500GAG/E
713A200.500WSCGA/R
G200.500CGG/R


Alignment:      TOP

20110601C-003255 : ...........................CCTCGCCGGCACTGCCCCCTCTCAGGATGAAGG
---------+---------+---------+---------+---------+---------+ 33
KDN01_0059_H08.b : nttcctgctgtggctctggagcttgccCCTCGCCGGCACTGCCCCCTCTCAGGATGAAGG
KDN01_0055_E12.b : naatcgctgtggctctggttgcccCTCGCCGGCACTGCCCCCTCTCAGGATGAAGG
KDN01_0058_A04.b : tttttcctgaggtggctatggttgcccCTCGCCGGCACTGCCCCCTCTCAGGGTGAAGG
KDN01_0084_G05.b : nnnnnggctgcgtttgctctggttgcccCTCGCCGGCACTGCCCCCTCTCAGGGTGAAGG
20110601C-003255 : ACCCAGACCCTTCCCAGGTCTATCGGCCTGATATGGACCCAGAGGCGGCCAAAGACAAGG
---------+---------+---------+---------+---------+---------+ 93
KDN01_0059_H08.b : ACCCAGACCCTTCCCAGGTCTATCGGCCTGATATGGACCCAGAGGCGGCCAAAGACAAGG
KDN01_0055_E12.b : ACCCAGACCCTTCCCAGGTCTATCGGCCTGATATGGACCCAGAGGCGGCCAAAGACAAGG
KDN01_0058_A04.b : ACCCAGACCCTTCCCAGGTCTATCGGCCTGATATGGACCCAGAGGCGGCCAAAGACAAGG
KDN01_0084_G05.b : ACCCAGACCCTTCCCAGGTCTATCGGCCTGATATGGACCCAGAGGCGGCCAAAGACAAGG
20110601C-003255 : GCAGCTTCCGAAACTACACGTCTGGCCCGCTGCTGGACCGGGTCTTCCGCACCTACAAGC
---------+---------+---------+---------+---------+---------+ 153
KDN01_0059_H08.b : GCAGCTTCCGAAACTACACGTCTGGCCCGCTGCTGGACCGGGTCTTCCGCACCTACAAGC
KDN01_0055_E12.b : GCAGCTTCCGAAACTACACGTCTGGCCCGCTGCTGGACCGGGTCTTCCGCACCTACAAGC
KDN01_0058_A04.b : GCAGCTTCCGAAACTACACGTCTGGCCCGCTGCTGGACCGGGTCTTCCGCACCTACAAGC
KDN01_0084_G05.b : GCAGCTTCCGAAACTACACGTCTGGCCCGCTGCTGGACCGGGTCTTCCGCACCTACAAGC
20110601C-003255 : TGATGCACACGTGGCAGACCGTGGACTTCGTCAGGAAGAAGCACGCCCAGTTCGGGGGCT
---------+---------+---------+---------+---------+---------+ 213
KDN01_0059_H08.b : TGATGCACACGTGGCAGACCGTGGACTTCGTCAGGAAGAAGCACGCCCAGTTCGGGGGCT
KDN01_0055_E12.b : TGATGCACACGTGGCAGACCGTGGACTTCGTCAGGAAGAAGCACGCCCAGTTCGGGGGCT
KDN01_0058_A04.b : TGATGCACACGTGGCAGACCGTGGACTTCGTCAGGAAGAAGCACGCCCAGTTCGGGGGCT
KDN01_0084_G05.b : TGATGCACACGTGGCAGACCGTGGACTTCGTCAGGAAGAAGCACGCCCAGTTCGGGGGCT
20110601C-003255 : TCTCCTACAAGAGAATGACTGTCTTGGAGGCCGTGGACATGCTAGACGGGCTGGTGGACG
---------+---------+---------+---------+---------+---------+ 273
KDN01_0059_H08.b : TCTCCTACAAGAGAATGACTGTCTTGGAGGCCGTGGACATGCTAGACGGGCTGGTGGACG
KDN01_0055_E12.b : TCTCCTACAAGAGAATGACTGTCTTGGAGGCCGTGGACATGCTAGACGGGCTGGTGGACG
KDN01_0058_A04.b : TCTCCTACGAGAGAATGACTGTCTTGGAGGCCGTGGACATGCTAGACGGGCTGGTGGACG
KDN01_0084_G05.b : TCTCCTACGAGAGAATGACTGTCTTGGAGGCCGTGGACATGCTAGACGGGCTGGTGGACG
20110601C-003255 : AGTCCGACCCCGACGTGGACTTCCCCAACTCCTTCCACGCCTTCCAGACGGCCGAGGGCA
---------+---------+---------+---------+---------+---------+ 333
KDN01_0059_H08.b : AGTCCGACCCCGACGTGGACTTCCCCAACTCCTTCCACGCCTTCCAGACGGCCGAGGGCA
KDN01_0055_E12.b : AGTCCGACCCCGACGTGGACTTCCCCAACTCCTTCCACGCCTTCCAGACGGCCGAGGGCA
KDN01_0058_A04.b : AGTCCGACCCCGACGTGGACTTCCCCAACTCCTTCCACGCCTTCCAGACGGCCGAGGGCA
KDN01_0084_G05.b : AGTCCGACCCCGACGTGGACTTCCCCAACTCCTTCCACGCCTTCCAGACGGCCGAGGGCA
20110601C-003255 : TCCGGAAGGCCCACCCTGACAAAGACTGGTTCCACCTCGTCGGGCTCCTGCATGACCTGG
---------+---------+---------+---------+---------+---------+ 393
KDN01_0059_H08.b : TCCGGAAGGCCCACCCTGACAAAGACTGGTTCCACCTCGTCGGGCTCCTGCATGACCTGG
KDN01_0055_E12.b : TCCGGAAGGCCCACCCTGACAAAGACTGGTTCCACCTCGTCGGGCTCCTGCATGACCTGG
KDN01_0058_A04.b : TCCGGAAGGCCCACCCTGACAAAGACTGGTTCCACCTCGTCGGGCTCCTGCATGACCTGG
KDN01_0084_G05.b : TCCGGAAGGCCCACCCTGACAAAGACTGGTTCCACCTCGTCGGGCTCCTGCATGACCTGG
20110601C-003255 : GGAAGGTCCTGGTTCTGGCAGGGGAACCCCAGTGGGCCGTCGTTGGAGACACCTTCCCTG
---------+---------+---------+---------+---------+---------+ 453
KDN01_0059_H08.b : GGAAGGTCCTGGTTCTGGCAGGGGAACCCCAGTGGGCCGTCGTTGGAGACACCTTCCCTG
KDN01_0055_E12.b : GGAAGGTCCTGGTTCTGGCAGGGGAACCCCAGTGGGCCGTCGTTGGAGACACCTTCCCTG
KDN01_0058_A04.b : GGAAGGTCCTGGTTCTGGCAGGGGAACCCCAGTGGGCCGTCGTTGGAGACACCTTCCCTG
KDN01_0084_G05.b : GGAAGGTCCTGGTTCTGGCAGGGGAACCCCAGTGGGCCGTCGTTGGAGACACCTTCCCTG
20110601C-003255 : TGGGCTGCCGTCCGCAGGCCTCTGTGGTTTTCTGCGACTCTACCTTCCAGGATAACCCTG
---------+---------+---------+---------+---------+---------+ 513
KDN01_0059_H08.b : TGGGCTGCCGTCCGCAGGCCTCTGTGGTTTTCTGCGACTCTACCTTCCAGGATAACCCTG
KDN01_0055_E12.b : TGGGCTGCCGTCCGCAGGCCTCTGTGGTTTTCTGCGACTCTACCTTCCAGGATAACCCTG
KDN01_0058_A04.b : TGGGCTGCCGTCCGCAGGCCTCTGTGGTTTTCTGCGACTCTACCTTCCAGGATAACCCTG
KDN01_0084_G05.b : TGGGCTGCCGTCCGCAGGCCTCTGTGGTTTTCTGCGACTCTACCTTCCAGGATAACCCTG
20110601C-003255 : ACCTTCAGGACCCTGTCTACAGCACAGAGCTTGGCATGTACCAGCCCCACTGTGGGCTCG
---------+---------+---------+---------+---------+---------+ 573
KDN01_0059_H08.b : ACCTTCAGGACCCTGTCTACAGCACAGAGCTTGGCATGTACCAGCCCCACTGTGGGCTCG
KDN01_0055_E12.b : ACCTTCAGGACCCTGTCTACAGCACAGAGCTTGGCATGTACCAGCCCCACTGTGGGCTCG
KDN01_0058_A04.b : ACCTTCAGGACCCTGTCTACAGCACAGAGCTTGGCATGTACCAGCCCCACTGTGGGCTCG
KDN01_0084_G05.b : ACCTTCAGGACCCTGTCTACAGCACAGAGCTTGGCATGTACCAGCCCCACTGTGGGCTCG
20110601C-003255 : AGAATGTCCTGATGTCCTGGGGCCACGATGAGTACATGTACCAGATGATGAAGTTCAACA
---------+---------+---------+---------+---------+---------+ 633
KDN01_0059_H08.b : AGAATGTCCTGATGTCCTGGGGCCACGATGAGTACATGTACCAGATGATGAAGTTCAACA
KDN01_0055_E12.b : AGAATGTCCTGATGTCCTGGGGCCACGATGAGTACATGTACCAGATGATGAAGTTCAACA
KDN01_0058_A04.b : AGAATGTCCTGATGTCCTGGGGCCACGATGAGTACATGTACCAGATGATGAAGTTCAACA
KDN01_0084_G05.b : AGAATGTCCTGATGTCCTGGGGCCACGATGAGTACATGTACCAGATGATGAAGTTCAACA
20110601C-003255 : AATTCTCCCTCCCAGGAGAGGCCTTCTACATCATCCGCTTCCACTCCTTCTACCCGTGGC
---------+---------+---------+---------+---------+---------+ 693
KDN01_0059_H08.b : AATTCTCCCTCCCAGGAGAGGCCTTCTACATCATCCGCTTCCACTCCTTCTACCCGTGGC
KDN01_0055_E12.b : AATTCTCCCTCCCAGGAGAGGCCTTCTACATCATCCGCTTCCACTCCTTCTACCCGTGGC
KDN01_0058_A04.b : AATTCTCCCTCCCAGGAGAGGCCTTCTACATCATCCGCTTCCACTCCTTCTACCCGTGGC
KDN01_0084_G05.b : AATTCTCCCTCCCAGGAGAGGCCTTCTACATCATCCGCTTCCACTCCTTCTACCCGTGGC
20110601C-003255 : ACACGGGCGGCGACTACCGGCAACTGTGCAACGAGCAGGACCTGGCCATGCTGCCCTGGG
---------+---------+---------+---------+---------+---------+ 753
KDN01_0059_H08.b : ACACGGGCGGCGACTACCGGCAACTGTGCAACGAGCAGGACCTGGCCATGCTGCCCTGNG
KDN01_0055_E12.b : ACACGGGCGGCGACTACCGGTAACTGTGCAACGAGCAGGACCTGGCCATGCTGCCCTGGG
KDN01_0058_A04.b : ACACGGGCGGCGACTACCGACAACTGTGCAACGAGCAGGACCTGGCCATGCTGCCCTGGG
KDN01_0084_G05.b : ACACGGGCGGCGACTACCGACAACTGTGCAACGAGCAGGACCTGGCCATGCTGCCCTGGG
20110601C-003255 : TGCAGGAGTTCAACAAGTTCGATCTCTACACCAAGGGCTCCGACCTGCCGGACGTGGACG
---------+---------+---------+---------+---------+---------+ 813
KDN01_0059_H08.b : TGCAGGAGTTCAACAAGTTCGATCTCTACACCAAGGGCTCCGACCTGCCGGACGTGGACG
KDN01_0055_E12.b : TGCAGGAGTTCAACAAGTTCGATCTCTACACCAAGGGCTCCGACCTGCCGGACGTGGACG
KDN01_0058_A04.b : TGCAGGAGTTCAACAAGTTCGATCTCTACACCAAGGGCTCCGACCTGCCGGACGTGGACG
KDN01_0084_G05.b : TGCAGGAGTTCAACAAGTTCGATCTCTACACCAAGGGCTCCGACCTGCCGGACGTGGACG
20110601C-003255 : AGCTGCGGCCCTACTACCAGGGGCTCATTGACAAGTACTGCCCCGGTGTCCTGTGCTGGT
---------+---------+---------+---------+---------+---------+ 873
KDN01_0059_H08.b : AGCTGCGGCCCTACTACCAGGGGCTCATTGACCAGTACTGCCCCGGTGTCCTGTGCTGGT
KDN01_0055_E12.b : AGCTGCGGCCCTACTACCAGGGGCTCATTGACAAGTACTGCCCCGGTGTCCTGTGCTGGT
KDN01_0058_A04.b : AGCTGCGGCCCTACTACCAGGGGCTCATTGACAAGTACTGCCCCGGTGTCCTGTGCTGGT
KDN01_0084_G05.b : AGCTGCGGCCCTACTACCAGGGGCTCATTGACAAGTACTGCCCCGGTGTCCTGTGCTGGT
20110601C-003255 : GACCGACCTGTCCACCTGCCCAAGCCTGGCTGGGTACCCCGGGTGACAGTCGCTGTCAGG
---------+---------+---------+---------+---------+---------+ 933
KDN01_0059_H08.b : GACCGACCTGTCCACCTGCCCAAGCCTGGCTGGTTA*CCCGGGTGACAGTCGCTGTCAGG
KDN01_0055_E12.b : GACCGACCTGTCCACCTGCCCAAGCCCGGCTGGGTACCCCGGGTGACAGTCGCTGTCAGG
KDN01_0058_A04.b : GACCGACCTGTCCACCTGCCCCAGCCTGGCTGGGTACCCCCGGTGACAGTCGCTGTCAGG
KDN01_0084_G05.b : GACCGACCTGTCCNACTGCCCAAAGCTGGCTGGGTACCCCGGGTGACAGTCGCTGTCAGG
20110601C-003255 : CACAGGGATGACCCAACGCGGCCTTTCCAGGGGTCCCCACAGGCCCACCTGCACTCCCTG
---------+---------+---------+---------+---------+---------+ 993
KDN01_0059_H08.b : GACAGGGATGAC*CCACGGCGCCTTTTCAGGGGTCCCCACAGGCCCACCTGCACTCCCTG
KDN01_0055_E12.b : CACAGGGATGACCCCACGCGGCCTTTCCAGGGGTCCCCACAGGCCCNACTGCACTCCCTG
KDN01_0058_A04.b : CACAGGGATGACCCANCGCGGCCTTTCCGGGGGTCCCC*CAGGCCCACCTGCACTTCCTG
KDN01_0084_G05.b : CACAGGGATGACCCACCGCGGGCTTTTCAGGGGTCCCCACAGGCCCCACTGCACTCCCTG
20110601C-003255 : CCCGGTTGGCCCCCATCCCA*GGGGCCA*TAAAAGCTCGAAAC****************A
---------+---------+---------+---------+---------+---------+ 1035
KDN01_0059_H08.b : CCGGGTGGCCCCCATCCCCA*GGGGCAA*TAAAAGCTCGAAAC****************A
KDN01_0055_E12.b : GCCCGGTGGCCCCCATCCCA*GGGGGCA*TAAAGCCTCGNAACNAANNNNNNNNNNNNAA
KDN01_0058_A04.b : CCGGGTTGGCCCCCTTCCCAAGGGGGCA*TAAAAGCCCGaaac****************a
KDN01_0084_G05.b : CCCGGTTGGCCCCCATCCCCCGGGGCCAATAAAACCTCGAAAC****************C
20110601C-003255 : AAAAAAAAAAAAAAAAAAAAA.......................................
---------+---------+---------+---------+---------+---------+ 1056
KDN01_0059_H08.b : GCTaaaaaaaaaaaaaaaaaaaaaaaggccctgggctcgaactgcagtcccggccccaaa
KDN01_0055_E12.b : ANAAAAAAAAAAAAAAAgccacatgtgtcaaactgcagtcccggccgctaacctgtctaa
KDN01_0058_A04.b : aaaaaaaaaaaaaaaaaaaaagggcccatggtctcaactgccagtcccggcccctaaata
KDN01_0084_G05.b : Gaaaaaaaaaaaaaaaaaaaaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-003255 : ............................................................
---------+---------+---------+---------+---------+---------+ 1056
KDN01_0059_H08.b : ctaactaaaaaaaaccttcccccccccccctgaccgaaaaaaaatgaatgcactgtgttg
KDN01_0055_E12.b : agaaaacctcccccccttcccctgaactgaaaaaaaatgcacgcctttctgtgtttaatg
KDN01_0058_A04.b : atccaaaaaaaaacccccccacctcccccgacctgaaacaaaaagaaagcattggtgttg
KDN01_0084_G05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-003255 : ............................................................
---------+---------+---------+---------+---------+---------+ 1056
KDN01_0059_H08.b : ttacctggttatggccttttaatggttcaaaataacaatcgctcccatttccaaaaaaac
KDN01_0055_E12.b : tttttgaaccttaggggttcaaaaaggcatagcccccaaattcccaaaaaagaatttttc
KDN01_0058_A04.b : ttacttgttattgcactttaaagggtcccaataagccaagcctcccaatttccaaaaagg
KDN01_0084_G05.b : xxxxxxxxxxxxxxgcccctaaaagggttcaataaggcatagcctccaatttccaaaaag
20110601C-003255 : ............................................................
---------+---------+---------+---------+---------+---------+ 1056
KDN01_0059_H08.b : atttttccggactccaatggggttgccaaccaaaggaatttatgttggagcccgggacaa
KDN01_0055_E12.b : ccgcctttccagggggggcctattcccgggtatcttaggggggggaacccgccccactta
KDN01_0058_A04.b : cttttttccgccatctattggggtgtccaaacccaaaaggtcttaaaggtgggatccccg
KDN01_0084_G05.b : cattttttccgcttccagtggggttggccacccccagtttttaaatgttggacccgggac
20110601C-003255 : ............................................................
---------+---------+---------+---------+---------+---------+ 1056
KDN01_0059_H08.b : accaaaaattccttccttcccccaaaacccccccgggtttgggggggaggttctccctca
KDN01_0055_E12.b : at
KDN01_0058_A04.b : gacaaaccagaatatccctccccttctccccaaaaccgggcccgggtttgtgtgggaggg
KDN01_0084_G05.b : cagcccaatattctcttcccttcccacaaaaccccgcccggtttgggtgggagggttcct
20110601C-003255 : ............................................................
---------+---------+---------+---------+---------+---------+ 1056
KDN01_0059_H08.b : gggaaggttcccaacgggaaaagaaaatgtaa
KDN01_0055_E12.b :
KDN01_0058_A04.b : tttcttctcagggggatagtttt
KDN01_0084_G05.b : tctaggggtaaagtttccccacgggtaaccgaaaatgtgaaggccaaggccaaaaagcct
20110601C-003255 : ............................................................
---------+---------+---------+---------+---------+---------+ 1056
KDN01_0059_H08.b :
KDN01_0055_E12.b :
KDN01_0058_A04.b :
KDN01_0084_G05.b : gtgtttttt