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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-003991

Length: 1,101

Sequence [FASTA format sequence]
AAGAGTTTCC AGGAGGAAAG GAGGGAAGTT GTGTGGGACA AGGTGCTCCT GACAGAAGGT
GCCAGGCTTG GAGTCAAGGG GCTGGGGGTT GTGGCCTGAG GTGAGGAAGG ACGCAGTCCA
AGGCAGGGTG GTTCCAGGGA ATGAGCTGGC CTGGGAGGAT GCTGCAGCTG AGCGTGTCCT
GGCTGGGACT GGAGACAGTG GCAGCCTCAC CATGGCTGCT TCTATTGCTG GTTGGGGCTT
CCTGGCTTAT GTCCCGAGTC CTGGTCTGGA CCTATGCTGC CTACAACTAT TCTCGCCACC
TCCAAAGTTT CCCACAGCCT CCAAAACGGA ACTGGTTCTT GGGTCACCTG GGCCTGGTTC
CCCCGACGGA GCAGGGATTG AGAGACTTAA CTCAGCTGGT GACTAACTAC CCCAAGGGAT
ATATGACCTG GATGGGCCCC ATCACACCCC TCGTCATTTT GTGCCACCCT GACTTGATCC
GGACAATGGC CAATGTCTCA GCTGCCATTG CATCCAAGGA TGTGGTCTTC TATGAAGTTC
TGAAGCCATG GCTGGGGGAT GGGCTCCTGC TGAGTGCTGG TGACAAGTGG AGCAGCCACC
GTCGCATGCT GACACCTGCC TTCCACTTCA ACATCCTGAA GCCCTACATG AAGATTTTCA
GTGACAGCGT GAATGTCATG CATGCCAAGT GGCAGCGTCT GGTCACAGAG GGCCACAACC
GTTTGGACAT GTTTGAACAC ATCAGCCTCA TGACCCTGGA CAGTCTGCAG AAATGTGTCT
TCAGCTTTGA CAGCAATTGC CAAGAGAAGC CTAGTGAATA TATTGCTGCC ATCTTGGAGC
TCAGTGCCCT TGTGGCAAAA CGGCACCAGC AGATCTTCCT GCACAAGGAC TTCCTGTACT
ACCTCACCCC CGAAGGGAGG CGCTTCCGCA AAGCCTGCCA CCTGGTGCAC AATTTCACAG
ATGCTGTCAT CCAGGAGCGG CGCCGCTCCC TCCCCAAAGA GGGCATTTGA TGATTTCCTT
CAGGCCAAAG GCTAATGCAA AGACTTTGGA CTTCATTGAT GTGCTCCTGC TGACCAAGGA
TGAAGATGGG AAGGGATTGT C


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCYP4F11cytochrome P450 4F11 [Homo sapiens]. 449e-126O
Contig/Assembly ProteinCYP4F11cytochrome P450 4F11 [Homo sapiens]. 449e-126O
Contig/Assembly ProteinCYP4F2leukotriene-B(4) omega-hydroxylase 1 [Homo sapiens]. 448e-126O
Contig/Assembly ProteinCYP4F3leukotriene-B(4) omega-hydroxylase 2 isoform b [Homo sapiens]. 445e-125O
Contig/Assembly ProteinCYP4F3leukotriene-B(4) omega-hydroxylase 2 isoform b [Homo sapiens]. 445e-125O
Contig/Assembly ProteinCYP4F8cytochrome P450 4F8 [Homo sapiens]. 437e-122O
Contig/Assembly ProteinCYP4F12cytochrome P450 4F12 [Homo sapiens]. 408e-114O
Contig/Assembly ProteinCYP4F3leukotriene-B(4) omega-hydroxylase 2 isoform a [Homo sapiens]. 397e-111O
Contig/Assembly ProteinCYP4F22cytochrome P450 4F22 [Homo sapiens]. 3152e-90O
Contig/Assembly ProteinCYP4X1cytochrome P450 4X1 [Homo sapiens]. 1721e-43O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCyp4f14leukotriene-B4 omega-hydroxylase 3 [Mus musculus]. 432e-127O
Contig/Assembly ProteinCyp4f14leukotriene-B4 omega-hydroxylase 3 [Mus musculus]. 432e-127O
Contig/Assembly ProteinCyp4f14leukotriene-B4 omega-hydroxylase 3 [Mus musculus]. 432e-127O
Contig/Assembly ProteinCyp4f14leukotriene-B4 omega-hydroxylase 3 [Mus musculus]. 432e-127O
Contig/Assembly ProteinCyp4f14leukotriene-B4 omega-hydroxylase 3 [Mus musculus]. 432e-127O
Contig/Assembly ProteinCyp4f15cytochrome P450, family 4, subfamily f, polypeptide 15 [Mus musculus]. 425e-119O
Contig/Assembly ProteinCyp4f40cytochrome P450, family 4, subfamily f, polypeptide 40 [Mus musculus]. 407e-114O
Contig/Assembly ProteinCyp4f18leukotriene-B(4) omega-hydroxylase 2 [Mus musculus]. 372e-109O
Contig/Assembly ProteinCyp4f13cytochrome P450, family 4, subfamily f, polypeptide 13 [Mus musculus]. 369e-107O
Contig/Assembly ProteinCyp4f17cytochrome P450, family 4, subfamily f, polypeptide 17 [Mus musculus]. 360e-104O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC484866PREDICTED: similar to Cytochrome P450 4F3 (CYPIVF3) (Leukotriene-B(4) omega-hydroxylase) (Leukotriene-B(4) 20-monooxygenase) (Cytochrome P450-LTB-omega) [Canis familiaris]. 416e-116O
Contig/Assembly ProteinLOC484867PREDICTED: similar to Cytochrome P450 4F6 (CYPIVF6) [Canis familiaris]. 382e-106O
Contig/Assembly ProteinLOC484868PREDICTED: similar to cytochrome P450, family 2, subfamily E, polypeptide 2 homolog [Canis familiaris]. 3171e-90O
Contig/Assembly ProteinCYP4A38cytochrome P450 4A38 [Canis lupus familiaris]. 1821e-48O
Contig/Assembly ProteinCYP4A11cytochrome P450, family 4, subfamily A, polypeptide 11 [Canis lupus familiaris]. 1814e-48O
Contig/Assembly ProteinCYP4A37cytochrome P450 4A37 [Canis lupus familiaris]. 1758e-47O
Contig/Assembly ProteinLOC608452PREDICTED: similar to cytochrome P450, family 4, subfamily B, polypeptide 1 isoform 2 [Canis familiaris]. 1578e-40O
Contig/Assembly ProteinCYP4X1cytochrome P450 4X1 [Canis lupus familiaris]. 1572e-38O
Contig/Assembly ProteinLOC608452PREDICTED: similar to cytochrome P450, family 4, subfamily B, polypeptide 1 isoform 3 [Canis familiaris]. 1452e-36O
Contig/Assembly ProteinLOC607548PREDICTED: similar to cytochrome P450, family 4, subfamily v, polypeptide 2 [Canis familiaris]. 1195e-27O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC100295883PREDICTED: cytochrome P450, family 4, subfamily F, polypeptide 2-like [Bos taurus]. 479e-135O
Contig/Assembly ProteinLOC100295883PREDICTED: cytochrome P450, family 4, subfamily F, polypeptide 2-like [Bos taurus]. 479e-135O
Contig/Assembly ProteinCYP4F2cytochrome P450, family 4, subfamily F, polypeptide 2 [Bos taurus]. 476e-141O
Contig/Assembly ProteinLOC509506PREDICTED: cytochrome P450, family 4, subfamily F, polypeptide 2-like [Bos taurus]. 468e-132O
Contig/Assembly ProteinLOC509506PREDICTED: cytochrome P450, family 4, subfamily F, polypeptide 2-like [Bos taurus]. 468e-132O
Contig/Assembly ProteinCYP4F2cytochrome P450, family 4, subfamily F, polypeptide 2 [Bos taurus]. 441e-131O
Contig/Assembly ProteinCYP4F3leukotriene-B(4) omega-hydroxylase 2 [Bos taurus]. 389e-108O
Contig/Assembly ProteinLOC100301224PREDICTED: cytochrome P450, family 4, subfamily F, polypeptide 22-like [Bos taurus]. 3102e-89O
Contig/Assembly ProteinCYP4A22cytochrome P450, family 4, subfamily A, polypeptide 22 [Bos taurus]. 1855e-47O
Contig/Assembly ProteinCYP4A11cytochrome P450, family 4, subfamily A, polypeptide 11 [Bos taurus]. 1834e-47O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCYP4F2PREDICTED: leukotriene-B(4) omega-hydroxylase 2 isoform 1 [Sus scrofa]. 486e-138O
Contig/Assembly ProteinCYP4F2PREDICTED: leukotriene-B(4) omega-hydroxylase 2 isoform 2 [Sus scrofa]. 426e-119O
Contig/Assembly ProteinLOC100620265PREDICTED: cytochrome P450 4F22-like [Sus scrofa]. 3241e-92O
Contig/Assembly ProteinLOC100620357PREDICTED: cytochrome P450 4F6-like [Sus scrofa]. 2692e-72O
Contig/Assembly ProteinLOC100523742PREDICTED: cytochrome P450 4A24-like isoform 2 [Sus scrofa]. 1779e-45O
Contig/Assembly ProteinLOC100523742PREDICTED: cytochrome P450 4A24-like isoform 1 [Sus scrofa]. 1762e-44O
Contig/Assembly ProteinLOC100522145PREDICTED: cytochrome P450 4A11-like [Sus scrofa]. 1742e-44O
Contig/Assembly ProteinCYP4A21taurochenodeoxycholic 6 alpha-hydroxylase [Sus scrofa]. 1724e-44O
Contig/Assembly ProteinLOC100526057PREDICTED: cytochrome P450 4A24-like [Sus scrofa]. 1632e-41O
Contig/Assembly ProteinCYP4A24cytochrome P450 4A24 [Sus scrofa]. 1623e-41O


Assembly Members: 6      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
LVR010102H06LVR01_0102_H06.bBP447673 
LVRM10019F09LVRM1_0019_F09.bBP140129 AK346044
LVRM10037E05LVRM1_0037_E05.bCJ001591 
LVRM10136G05LVRM1_0136_G05.bBP453285 
PST010023B12PST01_0023_B12.bFS698781 
PST010062C06PST01_0062_C06.bFS701722 AK396606

  

SNP: 1      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
348C300.500BSCTG/L
T030.500TTG/L


Alignment:      TOP

20110601C-003991 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
PST01_0062_C06.b : nnttctgcgttggcttctggag
LVRM1_0037_E05.b : ncgttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0136_G05.b : cagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0019_F09.b : cgttgaccxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PST01_0023_B12.b : nnnnnnggctgctgtgg
LVR01_0102_H06.b :
20110601C-003991 : ...AAGAGTTTCCAGGAGGAAAGGAGGGAAGTTGTGTGGGACAAGGTGCTCCTGACAGAA
---------+---------+---------+---------+---------+---------+ 57
PST01_0062_C06.b : ggcAAGAGTTTCCAGGA*GAAAGGAGGGAAGTTGTGTGGGACAAGGTGCTCCTGACAGAA
LVRM1_0037_E05.b : xxxxxGAGTTTCCAGGAGGAAAGGAGGGAAGTTGTGTGGGACAAGGTGCTCCTGACAGAA
LVRM1_0136_G05.b : xxxxxGAGTTTCCAGGAGGAAAGGAGGGAAGTTGTGTGGGACAAGGTGCTCCTGACAGAA
LVRM1_0019_F09.b : xxxxxGAGTTTCCAGGAGGAAAGGAGGGAAGTTGTGTGGGACAAGGTGCTCCTGACAGAA
PST01_0023_B12.b : ctctggaagatttccaggagAAGGAGGGAAGTTGTGTGGGACAAGGTGCTCCTGACAGGA
LVR01_0102_H06.b :
20110601C-003991 : GGTGCCAGGCTTGGAGTCAAGGGGCTGGGGGTTGTGGCCTGAGGTGAGGAAGGACGCAGT
---------+---------+---------+---------+---------+---------+ 117
PST01_0062_C06.b : GGTGCCAGGCTTGGAGTCAAGGGGCTGGGGGTTGTGGCCTGAGGTGAGGAAGGACGCAGT
LVRM1_0037_E05.b : GGTGCCAGGCTTGGAGTCAAGGGGCTGGGGGTTGTGGCCTGAGGTGAGGAAGGACGCAGT
LVRM1_0136_G05.b : GGTGCCAGGCTTGGAGTCAAGGGGCTGGGGGTTGTGGCCTGAGGTGAGGAAGGACGCAGT
LVRM1_0019_F09.b : GGTGCCAGGCTTGGAGTCAAGGGGCTGGGGGTTGTGGCCTGAGGTGAGGAAGGACGCAGT
PST01_0023_B12.b : GGTGCCAGGCTTGGAGTCAAGGGGCTGGGGGTTGTGGCCTGAGGTGAGGAAGGACGCAGT
LVR01_0102_H06.b :
20110601C-003991 : CCAAGGCAGGGTGGTTCCAGGGAATGAGCTGGCCTGGGAGGATGCTGCAGCTGAGCGTGT
---------+---------+---------+---------+---------+---------+ 177
PST01_0062_C06.b : CCAAGGCAGGGTGGTTCCAGGGAATGAGCTGGCCTGGGAGGATGCTGCAGCTGAGCGTGT
LVRM1_0037_E05.b : CCAAGGCAGGGTGGTTCCAGGGAATGAGCTGGCCTGGGAGGATGCTGCAGCTGAGCGTGT
LVRM1_0136_G05.b : CCAAGGCAGGGTGGTTCCAGGGAATGAGCTGGCCTGGGAGGATGCTGCAGCTGAGCGTGT
LVRM1_0019_F09.b : CCAAGGCAGGGTGGTTCCAGGGAATGAGCTGGCCTGGCAGGATGCTGCAGCTGAGCGTGT
PST01_0023_B12.b : CCAAGGCAGGGTGGTTCCAGGGAATGAGCTGGCCTGGGAGGATGCTGCAGCTGAGCGTGT
LVR01_0102_H06.b : gcctttggtgxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-003991 : CCTGGCTGGGACTGGAGACAGTGGCAGCCTCACCATGGCTGCTTCTATTGCTGGTTGGGG
---------+---------+---------+---------+---------+---------+ 237
PST01_0062_C06.b : CCTGGCTGGGACTGGAGACAGTGGCAGCCTCACCATGGCTGCTTCTATTGCTGGTTGGGG
LVRM1_0037_E05.b : CCTGGCTGGGACTGGAGACAGTGGCAGCCTCACCATGGCTGCTTCTATTGCTGGTTGGGG
LVRM1_0136_G05.b : CCTGGCTGGGACTGGAGACAGTGGCAGCCTCACCATGGCTGCTTCTATTGCTGGTTGGGG
LVRM1_0019_F09.b : CCTGGCTGGGACTGGAGACAGTGGCAGCCTCACCATGGCTGCTTCTATTGCTGGTTGGGG
PST01_0023_B12.b : CCTGGCTGGGACTGGAGACAGTGGCAGCCTCACCATGGCTGCTTCTATTGCTGGTTGGGG
LVR01_0102_H06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTGCTGGTTGGGG
20110601C-003991 : CTTCCTGGCTTATGTCCCGAGTCCTGGTCTGGACCTATGCTGCCTACAACTATTCTCGCC
---------+---------+---------+---------+---------+---------+ 297
PST01_0062_C06.b : CTTCCTGGCTTATGTCCCGAGTCCTGGTCTGGACCTATGCTGCCTACAACTATTCTCGCC
LVRM1_0037_E05.b : CTTCCTGGCTTATGTCCCGAGTCCTGGTCTGGACCTATGCTGCCTACAACTATTCTCGCC
LVRM1_0136_G05.b : CTTCCTGGCTTATGTCCCGAGTCCTGGTCTGGACCTATGCTGCCTACAACTATTCTCGCC
LVRM1_0019_F09.b : CTTCCTGGCTTATGTCCCGAGTCCTGGTCTGGACCTATGCTGCCTACAACTATTCTCGCC
PST01_0023_B12.b : CTTCCTGGCTTATGTCCCGAGTCCTGGTCTGGACCTATGCTGCCTACAACTATTCTCGCC
LVR01_0102_H06.b : CTTCCTGGCTTATGTCCCGAGTCCTGGTCTGGACCTATGCTGCCTACAACTATTCTCGCC
20110601C-003991 : ACCTCCAAAGTTTCCCACAGCCTCCAAAACGGAACTGGTTCTTGGGTCACCTGGGCCTGG
---------+---------+---------+---------+---------+---------+ 357
PST01_0062_C06.b : ACCTCCAAAGTTTCCCACAGCCTCCAAAACGGAACTGGTTCTTGGGTCACCTGGGCCTGG
LVRM1_0037_E05.b : ACCTCCAAAGTTTCCCACAGCCTCCAAAACGGAACTGGTTCTTGGGTCACTTGGGCCTGG
LVRM1_0136_G05.b : ACCTCCAAAGTTTCCCACAGCCTCCAAAACGGAACTGGTTCTTGGGTCACTTGGGCCTGG
LVRM1_0019_F09.b : ACCTCCNAAGTTTCCCACAGCCTCCAAAACGGAACTGGTTCTTGGGTCACTTGGGCCTGG
PST01_0023_B12.b : ACCTCCAAAGTTTCCCACAGCCTCCAAAACGGAACTGGTTCTTGGGTCACCTGGGCCTGG
LVR01_0102_H06.b : ACCTCCAAAGTTTCCCACAGCCTCCAAAACGGAACTGGTTCTTGGGTCACCTGGGCCTGG
20110601C-003991 : TTCCCCCGACGGAGCAGGGATTGAGAGACTTAACTCAGCTGGTGACTAACTACCCCAAGG
---------+---------+---------+---------+---------+---------+ 417
PST01_0062_C06.b : TTCCCCCGACGGAGCAGGGATTGAGAGACTTAACTCAGCTGGTGACTAACTACCCCAAGG
LVRM1_0037_E05.b : TTCCCCCGACGGAGCAGGGATTGAGAGACTTAACTCAGCTGGTGACTAACTACCCCAAGG
LVRM1_0136_G05.b : TTCCCCCGACGGAGCAGGGATTGAGAGACTTAACTCAGCTGGTGACTAACTACCCCAAGG
LVRM1_0019_F09.b : TTCCCCCGACGGAGCAGGGATTGAGAGACTTAACTCAGCTGGTGACTAACTACCCCAAGG
PST01_0023_B12.b : TTCCCCCGACGGAGCAGGGATTGAGAGACTTAACTCAGCTGGTGACTAACTACCCCAAGG
LVR01_0102_H06.b : TTCCCCCGACGGAGCAGGGATTGAGAGACTTAACTCAGCTGGTGACTAACTACCCCAAGG
20110601C-003991 : GATATATGACCTGGATGGGCCCCATCACACCCCTCGTCATTTTGTGCCACCCTGACTTGA
---------+---------+---------+---------+---------+---------+ 477
PST01_0062_C06.b : GATATATGACCTGGATGGGCCCCATCACACCCCTCGTCATTTTGTGCCACCCTGACTTGA
LVRM1_0037_E05.b : GATATATGACCTGGATGGGCCCCATCACACCCCTCGTCATTTTGTGCCACCCTGACTTGA
LVRM1_0136_G05.b : GATATATGACCTGGATGGGCCCCATCACACCCCTCGTCATTTTGTGCCACCCTGACTTGA
LVRM1_0019_F09.b : GATATATGACCTGGATGGGCCCCATCACACCCCTCGTCATTTTGTGCCACCCTGACTTGA
PST01_0023_B12.b : GATATATGACCTGGATGGGCCCCATCACACCCCTCGTCATTTTGTGCCACCCTGACTTGA
LVR01_0102_H06.b : GATATATGACCTGGATGGGCCCCATCACACCCCTCGTCATTTTGTGCCACCCTGACTTGA
20110601C-003991 : TCCGGACAATGGCCAATGTCTCAGCTGCCATTGCATCCAAGGATGTGGTCTTCTATGAAG
---------+---------+---------+---------+---------+---------+ 537
PST01_0062_C06.b : TCCGGACAATGGCCAATGTCTCAGCTGCCATTGCATCCAAGGATGTGGTCTTCTATGAAG
LVRM1_0037_E05.b : TCCGGACAATGGCCAATGTCTCAGCTGCCATTGCATCCAAGGATGTGGTCTTCTATGAAG
LVRM1_0136_G05.b : TCCGGACAATGGCCAATGTCTCAGCTGCCATTGCATCCAAGGATGTGGTCTTCTATGAAG
LVRM1_0019_F09.b : TCCGGACAATGGCCAATGTCTCAGCTGCCATTGCATCCNAGGATGTGGTCTTCTATGAAG
PST01_0023_B12.b : TCCGGACAATGGCCAATGTCTCAGCTGCCATTGCATCCAAGGATGTGGTCTTCTATGAAG
LVR01_0102_H06.b : TCCGGACAATGGCCAATGTCTCAGCTGCCATTGCATCCAAGGATGTGGTCTTCTATGAAG
20110601C-003991 : TTCTGAAGCCATGGCTGGGGGATGGGCTCCTGCTGAGTGCTGGTGACAAGTGGAGCAGCC
---------+---------+---------+---------+---------+---------+ 597
PST01_0062_C06.b : TTCTGAAGCCATGGCTGGGGGATGGGCTCCTGCTGAGTGCTGGTGACAAGTGGAGCAGCC
LVRM1_0037_E05.b : TTCTGAAGCCATGGCTGGGGGATGGGCTCCTGCTGAGTGCTGGTGACAAGTGGAGCAGCC
LVRM1_0136_G05.b : TTCTGAAGCCATGGCTGGGGGATGGGCTCCTGCTGAGTGCTGGTGACAAGTGGAGCAACC
LVRM1_0019_F09.b : TTCTGAAGCCATGGCTGGGGGATGGGCTCCTGCTGAGTGCTGGTGACAAGTGGAGCAGCC
PST01_0023_B12.b : TTCTGAAGCCATGGCTGGGGGATGGGCTCCTGCTGAGTGCTGGTGACAAGTGGAGCAGCC
LVR01_0102_H06.b : TTCTGAAGCCATGGCTGGGGGATGGGCTCCTGCTGAGTGCTGGTGACAAGTGGAGCAGCC
20110601C-003991 : ACCGTCGCATGCTGACACCTGCCTTCCACTTCAACATCCTGAAGCCCTACATGAAGATTT
---------+---------+---------+---------+---------+---------+ 657
PST01_0062_C06.b : ACCGTCGCATGCTGACACCTGCCTTCCACTTCAACATCCTGAAGCCCTACATGAAGATTT
LVRM1_0037_E05.b : ACCGTCGCATGCTGACACCTGCCTTCCACTTCAACATCCTGAAGCCCTACATGAAGATTT
LVRM1_0136_G05.b : ACCGTCGCATGCTGACACCTGCCTTCTACTTCAACATCCTGAAGCCCTACATGAAGAATT
LVRM1_0019_F09.b : ACCGTCGCATGCTGACACCTGCCTTCCACTTCAACATCCTGAAGCCCTACATGAAGATTT
PST01_0023_B12.b : ACCGTCGCATGCTGACACCTGCCTTCCACTTCAACATCCTGAAGCCCTACATGAAGATTT
LVR01_0102_H06.b : ACCGTCGCATGCTGACACCTGCCTTCCACTTCAACATCCTGAAGCCCTACATGAAGATTT
20110601C-003991 : TCAGTGACAGCGTGAATGTCATGCATGCCAAGTGGCAGCGTCTGGTCACAGAGGGCCACA
---------+---------+---------+---------+---------+---------+ 717
PST01_0062_C06.b : TCAGTGACAGCGTGAATGTCATGCATGCCAAGTGGCAGCGTCTGGTCACAGAGGGCCACA
LVRM1_0037_E05.b : TCAGTGACAGCGTGAATGTCATGCATGCCAAGTGGCAGCGTCTGGTCACAGAGGGCCACA
LVRM1_0136_G05.b : TCAGTGACAGCGTGAATGTTCTGCATGCCAAGTGGGCACGTCTGGTCACCAAAGGCCAAC
LVRM1_0019_F09.b : TCAGTGACAGCGTGAATGTCATGCATGCCAAGTGGCAGCGTCTGGTCACAGAGGGCCACA
PST01_0023_B12.b : TCAGTGACAGCGTGAATGTCATGCATGCCAAGTGGCAGCGCCTGGTCACAGAGGGCCACA
LVR01_0102_H06.b : TCAGTGACAGCGTGAATGTCATGCATGCCAAGTGGCAGCGTCTGGTCACAGAGGGCCACA
20110601C-003991 : ACCGTTTGGACATGTTTGAACACATCAGCCTCATGACCCTGGACAGTCTGCAGAAATGTG
---------+---------+---------+---------+---------+---------+ 777
PST01_0062_C06.b : ACCGTTTGGACATGTTTGAACACATCAGCCTCATGACCCTGGACAGTCTGCAGAAATGTG
LVRM1_0037_E05.b : ACCGTTTGGACATG
LVRM1_0136_G05.b : ACCGTTTGGA*ATGTTTGAACACATTCACCTCATGACCn
LVRM1_0019_F09.b : ACCGTTTGGACATGTTTGAACACATCANCCTCATGACCCTGGACAGTCTGCAGAAATGTG
PST01_0023_B12.b : ACCGTTTGGACATGTTTGAACACATCAGCCTCATGACCCTGGACAGTCTGCAGAAATGTG
LVR01_0102_H06.b : ACCGTTTGGACATGTTTGAACACATCAGCCTCATGACCCTGGACAGTCTGCAGAAATGTG
20110601C-003991 : TCTTCAGCTTTGACAGCAATTGCCAAGAGAAGCCTAGTGAATATATTGCTGCCATCTTGG
---------+---------+---------+---------+---------+---------+ 837
PST01_0062_C06.b : TCTTCAGCTTTGACAGCAATTGCCAAGAGAAGCCTAGTGAATATATTGCTGCCATCTTGG
LVRM1_0037_E05.b :
LVRM1_0136_G05.b :
LVRM1_0019_F09.b : TCTTCAG
PST01_0023_B12.b : TCTTCAGCTTTGACAGCAATTGCCAAGAGAAGCCTAGTGAATATATTGCTGCCATCTTGG
LVR01_0102_H06.b : TCTTCAGCTTTGACAGCAATTGCCAAGAGAAGCCTAGTGAATATATTGCTGCCATCTTGG
20110601C-003991 : AGCTCAGTGCCCTTGTGGCAAAACGGCACCAGCAGATCTTCCTGCACAAGGACTTCC*TG
---------+---------+---------+---------+---------+---------+ 896
PST01_0062_C06.b : AGCTCAGTGCCCTTGTGGCAAAACGGCACCAGCAGATCTTCCTGCACAAGGACTTCC*TG
LVRM1_0037_E05.b :
LVRM1_0136_G05.b :
LVRM1_0019_F09.b :
PST01_0023_B12.b : AGCTCAGTGCCCTTGTGGNCAAACGGCACCAGCAGATCTTCCTGCANCAGGACTTCCCTG
LVR01_0102_H06.b : AGCTCAGTGCCCTTGTGGCAAAACGGCACCAGCAGATCTTCCTGCACAAGGACTTCC*TG
20110601C-003991 : TACTACCTCACCCCCGAAGGGAGGCGCTTCCGCAAAGCCTGCCACCTGGTGCACAATTTC
---------+---------+---------+---------+---------+---------+ 956
PST01_0062_C06.b : TACTACCTCACCCCCGAAAGGAGGCGCTTCCCGCAAGCCTGCCACCTGGTGCACAATTTC
LVRM1_0037_E05.b :
LVRM1_0136_G05.b :
LVRM1_0019_F09.b :
PST01_0023_B12.b : TACTAC*TCACCCCCGAAGGNAGGCGCTTCC*GCAAGCCCTGCACCTGNTGCACA*TTTC
LVR01_0102_H06.b : TACTACCTCACCCCCGAAGGGAGGCGCTTCCGCAAAGCCTGCCACCTGGTGCACAATTTC
20110601C-003991 : ACAGATGCTGTCATCCAGGAGCGGCGCCGCTCCCTCCCCAAAGAGGGCATTTGATGATTT
---------+---------+---------+---------+---------+---------+ 1016
PST01_0062_C06.b : ACAGATGCTGTCATCCAGGAGCGGCGCCGCTCCCTCCCCAAAGAAGGCAT*TGATGATTT
LVRM1_0037_E05.b :
LVRM1_0136_G05.b :
LVRM1_0019_F09.b :
PST01_0023_B12.b : ACAGATGCTGTCATCCAGAAGCGGCGCCGCTCCCTCCCCAAgagggcattgatgattccn
LVR01_0102_H06.b : ACAGATGCTGTCATCCAGGAGCGGCGCCGCTCCCTCCCCAAAGAGGGCATTTGATGATTT
20110601C-003991 : CCTTCAGGCCAAAGGCTAATGCAAAGACTTTGGACTTCATTGATGTGCTCCTGCTGACCA
---------+---------+---------+---------+---------+---------+ 1076
PST01_0062_C06.b : CCTCAAGGCCAAggcctatgccaagaccttggacttcatgatgtgctcctgctgacacag
LVRM1_0037_E05.b :
LVRM1_0136_G05.b :
LVRM1_0019_F09.b :
PST01_0023_B12.b : ntcagggcaagggctatgcaaagactttggaactccatgatgtgctcctgctgaccaagg
LVR01_0102_H06.b : CCCTCAGGCCAAAGGCTAATGCAAAGACTTTGGACTTCATTGATGTGCTCCTGCTGACCA
20110601C-003991 : AGGATGAAGATGGGAAGGGATTGTC...................................
---------+---------+---------+---------+---------+---------+ 1101
PST01_0062_C06.b : atgaaaatgggaaaggatggtcaataaaaattccgagcgaacctgacacttcatgtttga
LVRM1_0037_E05.b :
LVRM1_0136_G05.b :
LVRM1_0019_F09.b :
PST01_0023_B12.b : atgaaaatggnaagggnatgtcaaatgaaaaatttccgacctgaagctgacacctttctg
LVR01_0102_H06.b : AGGATGAAGATGGGAAGGGATTGTCaaatgaagatatccgagctgaagctgacaccttca
20110601C-003991 : ............................................................
---------+---------+---------+---------+---------+---------+ 1101
PST01_0062_C06.b : gggcctgacacccaccagtggcttccctgggtctgtacaactggnaagccccaaaatcan
LVRM1_0037_E05.b :
LVRM1_0136_G05.b :
LVRM1_0019_F09.b :
PST01_0023_B12.b : tttaagggcttgaaccccagcccatgtgctttctggggtcctgtaacctggaaaaggccc
LVR01_0102_H06.b : tgtttgaaggccatgacaccacagcccgtggccctctgctgggttcctgtacaacctggc
20110601C-003991 : ............................................................
---------+---------+---------+---------+---------+---------+ 1101
PST01_0062_C06.b : accccgccggcggagggcttaactcttgagacgtgactaaaaattaaggacaattggcaa
LVRM1_0037_E05.b :
LVRM1_0136_G05.b :
LVRM1_0019_F09.b :
PST01_0023_B12.b : aaaatccaggaacccttcccccgaaggtcttgaacccctaggaccgggacccataaaaat
LVR01_0102_H06.b : aaaaccacccaaaatacccagaagcgctgcccggcaggaaggtgcaatgaactccctaaa
20110601C-003991 : ............................................................
---------+---------+---------+---------+---------+---------+ 1101
PST01_0062_C06.b : ttcccttctacatgtatcaggaaaacgggtgaccccccctggttctcccccttaccaaat
LVRM1_0037_E05.b :
LVRM1_0136_G05.b :
LVRM1_0019_F09.b :
PST01_0023_B12.b : gaagggaaaattggccaattcctttt
LVR01_0102_H06.b : ggaaccggtgagccctaaaaaaaaattaaattgggaaacaaatcttggcacaaattttgc
20110601C-003991 : ............................................................
---------+---------+---------+---------+---------+---------+ 1101
PST01_0062_C06.b : gggccaaggggggatcccaggttttctcccaatttgtgacccaccccggggaatggagtt
LVRM1_0037_E05.b :
LVRM1_0136_G05.b :
LVRM1_0019_F09.b :
PST01_0023_B12.b :
LVR01_0102_H06.b : ccccttccccttaacaccttgtggtcatatcaaagggaaaaaaatttttgggcggggttg
20110601C-003991 : ............................................................
---------+---------+---------+---------+---------+---------+ 1101
PST01_0062_C06.b : ttctcttcccaa
LVRM1_0037_E05.b :
LVRM1_0136_G05.b :
LVRM1_0019_F09.b :
PST01_0023_B12.b :
LVR01_0102_H06.b : ttccctttcccttctcccctcttccacccctgttttttctattttcttctccccccccct