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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-004361

Length: 1,170

Sequence [FASTA format sequence]
TTTCGTTCAT TTTCCGCAAG GGAAAAAAAA ATAGTGGCAT TTGGTCCTTT TGCTTCTGTA
TTATCACCAT CCTCGCTGTG CTTGGACTTC TGTTTGATGA CAGTGAGCAC AGTGCCTTGT
ACGCCGTTGC CTTTTTAATA CCGCAGGCCA CATTAATTGG CTACCTGTTC TTAGTTTTCC
ATTTTTCCAT GTTTTATTAC CTTGATGAAG AATCAAGAAC CATTGAGCCA TTTTTGGTAT
CCCTGATCCC TTTCCTTCAT TTTATCACCT TTCTTTTTAT TCTTCGATGT CTGGAATGGA
AGTTTGGGAA GACGTCAATG AGAAAGGATC CCTTCTTTAG AATTTCTCCA AGAAGGAGCG
ATGTGTGTCC AAATCCAGAA GAGCCAGAAG GGGAAGATGA AGATGTTCAG ATGGAAAGAA
GGAGAACAGC AGATGCCCTG AATTCCACGA ATTTCGATGA GAAACCTGTC ATTATCGCCA
GCTGTCTACG CAAGGAGTAC ACAGGGAAAA GGAAACGCTG CTTGTCCAAG AGGAAGAAGA
AAATAGCCGC AAGACATGTC TCTTTCTGTG TTAGGAAAGG TGAGGTTTTA GGATTATTAG
GACACAATGG AGCTGGTAAA AGTACATCCA TTAAAGTGAT AACTGGAGAC ACAAAACCAA
CTGCTGGGCA GGTGCTCCTG AAAGGGAGCA GCAGAGGGGA CCCGCTGGGC TTCCTGGGGT
ACTGTCCCCA GGAGAACGCG CTGTGGCCCA GCCTGACGGT GAAGGAGCAT CTGGAGGTGT
TCGCCGCCGT GAAGGGGCTG AGGAAAGCGG ACGCTGCCGC GGCCATCGCG CGGTTGGTGG
ATGCGCTCAA GCTGCAGGAC CAGCTGAAGC TCCCCACGAA GGCCTTGTCC GAGGGAATAA
AGAGGAAGCT GTGCTTCGCG CTGAGCATCC TGGGAAACCC GTCGGTGGTG CTTCTGGACG
AGCCGTCCAC GGGGATGGAC CCCGAGGGGC AGCAGCAGAT GTGGCAGGCG ATCCGGGCCA
CCCTTCAAAA ACACGAAAAG GGGGCCCCCT CCTGACCACA CACTACATGG GCCGAGGCCG
AGGCCCGGTG GGACCGCGTG GGCCTCATGG TGGTCCGGGA AGGTTGAAAA TGATTGGGGC
CATCCACCAC CTAAAGAACC AATTTGGCAA


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinABCA8ATP-binding cassette sub-family A member 8 [Homo sapiens]. 474e-134
Contig/Assembly ProteinABCA9ATP-binding cassette sub-family A member 9 [Homo sapiens]. 404e-113
Contig/Assembly ProteinABCA10ATP-binding cassette sub-family A member 10 [Homo sapiens]. 3493e-96
Contig/Assembly ProteinABCA6ATP-binding cassette sub-family A member 6 [Homo sapiens]. 3271e-89
Contig/Assembly ProteinABCA5ATP-binding cassette sub-family A member 5 [Homo sapiens]. 2288e-60
Contig/Assembly ProteinABCA5ATP-binding cassette sub-family A member 5 [Homo sapiens]. 2288e-60
Contig/Assembly ProteinABCA12ATP-binding cassette sub-family A member 12 isoform a [Homo sapiens]. 1142e-25
Contig/Assembly ProteinABCA12ATP-binding cassette sub-family A member 12 isoform b [Homo sapiens]. 1142e-25
Contig/Assembly ProteinABCA2ATP-binding cassette sub-family A member 2 isoform b [Homo sapiens]. 1071e-24
Contig/Assembly ProteinABCA2ATP-binding cassette sub-family A member 2 isoform a [Homo sapiens]. 1071e-24


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinAbca8bATP-binding cassette sub-family A member 8-B [Mus musculus]. 431e-121
Contig/Assembly ProteinAbca8aATP-binding cassette sub-family A member 8-A [Mus musculus]. 387e-108
Contig/Assembly ProteinAbca9ATP-binding cassette sub-family A member 9 [Mus musculus]. 381e-106
Contig/Assembly ProteinAbca6ATP-binding cassette sub-family A member 6 isoform 1 [Mus musculus]. 3108e-85
Contig/Assembly ProteinAbca5ATP-binding cassette sub-family A member 5 [Mus musculus]. 2194e-57
Contig/Assembly ProteinAbca12ATP-binding cassette, sub-family A (ABC1), member 12 [Mus musculus]. 1157e-26
Contig/Assembly ProteinAbca7ATP-binding cassette sub-family A member 7 [Mus musculus]. 1127e-25
Contig/Assembly ProteinAbca13ATP-binding cassette sub-family A member 13 [Mus musculus]. 1102e-24
Contig/Assembly ProteinAbca14ATP-binding cassette, sub-family A (ABC1), member 14 [Mus musculus]. 1071e-23
Contig/Assembly ProteinAbca2ATP-binding cassette sub-family A member 2 [Mus musculus]. 1077e-25


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC490898PREDICTED: similar to ATP-binding cassette, sub-family A member 8 [Canis familiaris]. 486e-137
Contig/Assembly ProteinLOC611016PREDICTED: similar to ATP-binding cassette, sub-family A, member 9 isoform a [Canis familiaris]. 404e-113
Contig/Assembly ProteinLOC480456PREDICTED: similar to ATP-binding cassette, sub-family A, member 6 isoform a isoform 2 [Canis familiaris]. 3226e-88
Contig/Assembly ProteinLOC480456PREDICTED: similar to ATP-binding cassette, sub-family A, member 6 isoform a isoform 1 [Canis familiaris]. 2441e-64O
Contig/Assembly ProteinLOC480455PREDICTED: similar to ATP-binding cassette, sub-family A , member 5 isoform 2 [Canis familiaris]. 2324e-61
Contig/Assembly ProteinLOC480455PREDICTED: similar to ATP-binding cassette, sub-family A , member 5 isoform 1 [Canis familiaris]. 2324e-61
Contig/Assembly ProteinLOC480455PREDICTED: similar to ATP-binding cassette, sub-family A , member 5 isoform 6 [Canis familiaris]. 2324e-61
Contig/Assembly ProteinLOC480455PREDICTED: similar to ATP-binding cassette, sub-family A , member 5 isoform 3 [Canis familiaris]. 2126e-55
Contig/Assembly ProteinLOC489979PREDICTED: similar to ATP-binding cassette transporter sub-family A member 15 [Canis familiaris]. 1172e-26
Contig/Assembly ProteinLOC478900PREDICTED: similar to ATP-binding cassette, sub-family A, member 12 (ATP-binding cassette transporter 12) (ATP-binding cassette 12) isoform 1 [Canis familiaris]. 1134e-25


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinABCA9ATP-binding cassette sub-family A member 9 [Bos taurus]. 371e-103
Contig/Assembly ProteinABCA6PREDICTED: hCG2039659-like [Bos taurus]. 3141e-85
Contig/Assembly ProteinABCA6PREDICTED: hCG2039659-like [Bos taurus]. 3141e-85
Contig/Assembly ProteinABCA10PREDICTED: ATP-binding cassette, sub-family A, member 9 [Bos taurus]. 3062e-83
Contig/Assembly ProteinABCA10PREDICTED: ATP-binding cassette, sub-family A (ABC1), member 9-like, partial [Bos taurus]. 3062e-83
Contig/Assembly ProteinABCA5PREDICTED: ATP-binding cassette, sub-family A (ABC1), member 5 [Bos taurus]. 2233e-58
Contig/Assembly ProteinABCA5PREDICTED: ATP-binding cassette, sub-family A (ABC1), member 5, partial [Bos taurus]. 2233e-58
Contig/Assembly ProteinABCA12PREDICTED: ATP-binding cassette, sub-family A (ABC1), member 12 [Bos taurus]. 1157e-26
Contig/Assembly ProteinABCA13PREDICTED: ATP binding cassette, sub-family A (ABC1), member 13 [Bos taurus]. 1133e-25
Contig/Assembly ProteinABCA7ATP-binding cassette sub-family A member 7 [Bos taurus]. 1111e-24


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinABCA8PREDICTED: LOW QUALITY PROTEIN: ATP-binding cassette sub-family A member 8 [Sus scrofa]. 578e-166
Contig/Assembly ProteinABCA9PREDICTED: ATP-binding cassette sub-family A member 9 isoform 1 [Sus scrofa]. 427e-120
Contig/Assembly ProteinLOC100521038PREDICTED: ATP-binding cassette sub-family A member 8-like, partial [Sus scrofa]. 370e-103O
Contig/Assembly ProteinABCA6PREDICTED: ATP-binding cassette sub-family A member 6 [Sus scrofa]. 3145e-86
Contig/Assembly ProteinLOC100620562PREDICTED: ATP-binding cassette sub-family A member 6-like, partial [Sus scrofa]. 2784e-75
Contig/Assembly ProteinABCA12PREDICTED: ATP-binding cassette sub-family A member 12 [Sus scrofa]. 1163e-26
Contig/Assembly ProteinABCA7PREDICTED: ATP-binding cassette sub-family A member 7 [Sus scrofa]. 1124e-25
Contig/Assembly ProteinLOC100622606PREDICTED: ATP-binding cassette sub-family A member 3-like [Sus scrofa]. 1031e-22
Contig/Assembly ProteinLOC100155583PREDICTED: retinal-specific ATP-binding cassette transporter [Sus scrofa]. 1023e-22
Contig/Assembly ProteinLOC100524794PREDICTED: ATP-binding cassette sub-family A member 3-like [Sus scrofa]. 1001e-21


Assembly Members: 5      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
LVR010035F01LVR01_0035_F01.bBP445450 
LVR010045A01LVR01_0045_A01.bBP440972 AK345887
LVRM10018F11LVRM1_0018_F11.bBP452858 
LVRM10127E03LVRM1_0127_E03.bBP451549 
SKNB10035H12SKNB1_0035_H12.bDB801939 

  

SNPs: 3      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
539A200.400WSAAA/K
G120.600AAG/K
693A110.500WNAGA/R
G200.500GGA/G
771C110.500WSCTG/L
T200.500TTG/L


Alignment:      TOP

20110601C-004361 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
LVR01_0045_A01.b : ggggggtatggctttgtgactagtagacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SKNB1_0035_H12.b :
LVRM1_0127_E03.b :
LVR01_0035_F01.b :
LVRM1_0018_F11.b :
20110601C-004361 : ...............................TTTCGTTCATTTTCCGCAAGGGAAAAAAA
---------+---------+---------+---------+---------+---------+ 29
LVR01_0045_A01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTCGTTCATTTTCCGCAAGGGAAAAAAA
SKNB1_0035_H12.b :
LVRM1_0127_E03.b : nagtt
LVR01_0035_F01.b :
LVRM1_0018_F11.b :
20110601C-004361 : AATAGTGGCATTTGGTCCTTTTGCTTCTGTATTATCACCATCCTCGCTGTGCTTGGACTT
---------+---------+---------+---------+---------+---------+ 89
LVR01_0045_A01.b : AATAGTGGCATTTGGTCCTTTTGCTTCTGTATTATCACCATCCTCGCTGTGCTTGGACTT
SKNB1_0035_H12.b : ntttatttcgcgttggctatggATCCTCGCTGTGCTTGGACTT
LVRM1_0127_E03.b : gtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTT
LVR01_0035_F01.b :
LVRM1_0018_F11.b :
20110601C-004361 : CTGTTTGATGACAGTGAGCACAGTGCCTTGTACGCCGTTGCCTTTTTAATACCGCAGGCC
---------+---------+---------+---------+---------+---------+ 149
LVR01_0045_A01.b : CTGTTTGATGACAGTGAGCACAGTGCCTTGTACGCCGTTGCCTTTTTAATACCGCAGGCC
SKNB1_0035_H12.b : CTGTTTGATGAC*GTGAGCACAGTGCCTTGTACGCCATTGCCTTTTTAATACCGCAGGCC
LVRM1_0127_E03.b : CTGTTTGATGACAGTGAGCACAGTGCCTTGTACGCCGTTGCCTTTTTAATACCGCAGGCC
LVR01_0035_F01.b :
LVRM1_0018_F11.b :
20110601C-004361 : ACATTAATTGGCTACCTGTTCTTAGTTTTCCATTTTTCCATGTTTTATTACCTTGATGAA
---------+---------+---------+---------+---------+---------+ 209
LVR01_0045_A01.b : ACATTAATTGGCTACCTGTTCTTAGTTTTCCATTTTTCCATGTTTTATTACCTTGATGAA
SKNB1_0035_H12.b : ACATTAATTGGCTACCTGTTCTTAGTTTTCCATTTTTCCATGTTTTATTACCTTGATGAA
LVRM1_0127_E03.b : ACATTAATTGGCTACCTGTTCTTAGTTTTCCATTTTTCCATGTTTTATTACCTTGATGAA
LVR01_0035_F01.b : atttggggggacttaag
LVRM1_0018_F11.b :
20110601C-004361 : GAATCAAGAACCATTGAGCCATTTTTGGTATCCCTGATCCCTTTCCTTCATTTTATCACC
---------+---------+---------+---------+---------+---------+ 269
LVR01_0045_A01.b : GAATCAAGAACCATTGAGCCATTTTTGGTATCCCTGATCCCTTTCCTTCATTTTATCACC
SKNB1_0035_H12.b : GAATCAAGAACCATTGAGCCATTTTTGGTATCCCTGATCCCTTTCCTTCATTTTATCACC
LVRM1_0127_E03.b : GAATCAAGAACCATTGAGCCATTTTTGGTATCCCTGATCCCTTTCCTTCATTTTATCACC
LVR01_0035_F01.b : txxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0018_F11.b :
20110601C-004361 : TTTCTTTTTATTCTTCGATGTCTGGAATGGAAGTTTGGGAAGACGTCAATGAGAAAGGAT
---------+---------+---------+---------+---------+---------+ 329
LVR01_0045_A01.b : TTTCTTTTTATTCTTCGATGTCTGGAATGGAAGTTTGGGAAGACGTCAATGAGAAAGGAT
SKNB1_0035_H12.b : TTTCTTTTTATTCTTCGATGTCTGGAATGGAAGTTTGGGAAGACGTCAATGAGAAAGGAT
LVRM1_0127_E03.b : TTTCTTTTTATTCTTCGATGTCTGGAATGGAAGTTTGGGAAGACGTCAATGAGAAAGGAT
LVR01_0035_F01.b : xxxxxxTTTATTCTTCGATGTCTGGAATGGAAGTTTGGGAAGACGTCAATGAGAAAGGAT
LVRM1_0018_F11.b : cgttgtcxxxxxxxxxxxxxxxxxxxxxxx
20110601C-004361 : CCCTTCTTTAGAATTTCTCCAAGAAGGAGCGATGTGTGTCCAAATCCAGAAGAGCCAGAA
---------+---------+---------+---------+---------+---------+ 389
LVR01_0045_A01.b : CCCTTCTTTAGAATTTCTCCAAGAAGGAGCGATGTGTGTCCAAATCCAGAAGAGCCAGAA
SKNB1_0035_H12.b : CCCTTCTTTAGAATTTCTCCAAGAAGGAGCGATGTGTGTCCAAATCCAGAAGAGCCAGAA
LVRM1_0127_E03.b : CCCTTCTTTAGAATTTCTCCAAGAAGGAGCGATGTGTGTCCAAATCCAGAAGAGCCAGAA
LVR01_0035_F01.b : CCCTTCTTTAGAATTTCTCCAAGAAGGAGCGATGCGTGTCCAAATCCAGAAGAGCCAGAA
LVRM1_0018_F11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxCGATGTGTGTCCAAATCCAGAAGAGCCAGAA
20110601C-004361 : GGGGAAGATGAAGATGTTCAGATGGAAAGAAGGAGAACAGCAGATGCCCTGAATTCCACG
---------+---------+---------+---------+---------+---------+ 449
LVR01_0045_A01.b : GGGGAAGATGAAGATGTTCAGATGGAAAGAAGGAGAACAGCAGATGCCCTGAATTCCACG
SKNB1_0035_H12.b : GGGGAAGATGAAGATGTTCAGATGGAAAGAAGGAGAACAGCAGATGCCCTGAATTCCACG
LVRM1_0127_E03.b : GGGGAAGATGAAGATGTTCAGATGGAAAGAAGGAGAACAGCAGATGCCCTGAATTCCACG
LVR01_0035_F01.b : GGGGAAGATGAAGATGTTCAGATGGAAAGAAGGAGAACAGCAGATGGCCTGAATTCCACG
LVRM1_0018_F11.b : GGGGAAGATGAAGATGTTCAGATGGAAAGAAGGAGAACAGCAGATGCCCTGAATTCCACG
20110601C-004361 : AATTTCGATGAGAAACCTGTCATTATCGCCAGCTGTCTACGCAAGGAGTACACAGGGAAA
---------+---------+---------+---------+---------+---------+ 509
LVR01_0045_A01.b : AATTTCGATGAGAAACCTGTCATTATCGCCAGCTGTCTACGCAAGGAGTACACAGGGAAA
SKNB1_0035_H12.b : AATTTCGATGAGAAACCTGTCATTATCGCCAGCTGTCTACGCAAGGAGTACACAGGGAAA
LVRM1_0127_E03.b : AATTTCGATGAGAAACCTGTCATTATCGCCAGCTGTCTACGCAAGGAGTACACAGGGAAA
LVR01_0035_F01.b : AATTTCGATGAGAAACCTGTCATTATCGCCAGCTGTCTACGCAAGGAGTACACAGGGAAA
LVRM1_0018_F11.b : AATTTCGATGAGAAACCTGTCATTATCGCCAGCTGTCTACGCAAGGAGTACACAGGGAAA
20110601C-004361 : AGGAAACGCTGCTTGTCCAAGAGGAAGAAGAAAATAGCCGCAAGACATGTCTCTTTCTGT
---------+---------+---------+---------+---------+---------+ 569
LVR01_0045_A01.b : AGGAAACGCTGCTTGTCCAAGAGGAAGAAGAAAATAGCCGCAAGACATGTCTCTTTCTGT
SKNB1_0035_H12.b : AGGAAACGCTGCTTGTCCAAGAGGAAGAAAAAAATAGCCGCAAGACATGTCTCTTTCTGT
LVRM1_0127_E03.b : AGGAAACGCTGCTTGTCCAAGAGGAAGAAGAGAATAGCCGCNAGACATGTCTCTTTCTGT
LVR01_0035_F01.b : AGGAAACGCTGCTTGTCCAAGAGGAAGAAAAAAATAGCCGCAAGACATGTCTCTTTCTGT
LVRM1_0018_F11.b : AGGAAACGCTGCTTGTCCAAGAGGAAGAAGAAAATAGCCGCAAGACATGTCTCTTTCTGT
20110601C-004361 : GTTAGGAAAGGTGAGGTTTTAGGATTATTAGGACACAATGGAGCTGGTAAAAGTACATCC
---------+---------+---------+---------+---------+---------+ 629
LVR01_0045_A01.b : GTTAGGAAAGGTGAGGTTTTAGGATTATTAGGACACAATGGAGCTGGTAAAAGTACATCC
SKNB1_0035_H12.b : GTTAGGAAAGGTGAGGTTTTAGGATTATTAGGACACAATGGAGCTGGTAAAAGTACATCC
LVRM1_0127_E03.b : GTTAGGAAAGGTGAGGTTTTAGGATTATTAGGACACAATGGAGCTGGTAAAAGTACATCC
LVR01_0035_F01.b : GTTAGGAAAGGTGAGGTTTTAGGATTATTAGGACACAATGGAGCTGGTAAAAGTACATCC
LVRM1_0018_F11.b : GTTAGGAAAGGTGAGGTTTTAGGATTATTAGGACACAATGGAGCTGGTAAAAGTACATCC
20110601C-004361 : ATTAAAGTGATAACTGGAGACACAAAACCAACTGCTGGGCAGGTGCTCCTGAAAGGGAGC
---------+---------+---------+---------+---------+---------+ 689
LVR01_0045_A01.b : ATTAAAGTGATAACTGGAGACACAAAACCAACTGCTGGGCAGGTGCTCCTGAAAGGGAGC
SKNB1_0035_H12.b : ATTAAAGTGATAACTGGAGACACAAAACCAACTGCTGGGCAGGTGCTCCTGAAAGGGAGC
LVRM1_0127_E03.b : ATTAAAGTGATAACTGGAGACAGCAAACCAACTGCTGGGCAGGTGCTCCTGAGAGGGA*C
LVR01_0035_F01.b : ATTAAAGTGATAACTGGAGACACAAAACCAACTGCTGGGCAGGTGCTCCTGAAAGGGAGC
LVRM1_0018_F11.b : ATTAAAGTGATAACTGGAGACACAAAACCAACTGCTGGGCAGGTGCTCCTGAAAGGGAGC
20110601C-004361 : AGCAGAGGGGACCCGCTGGGCTTCCTGGGGTACTGTCCCCAGGAGAACGCGCTGTGGCCC
---------+---------+---------+---------+---------+---------+ 749
LVR01_0045_A01.b : AGCAGAGGGGACCCGCTGGGCTTCCTGGGGTACTGTCCCCAGGAGAACGCGCTGTGGCCC
SKNB1_0035_H12.b : AGCGGAGGGGACCCGCTGGGCTTCCTGGGGTACTGTCCCCAGGAGAACGCGCTGTGGCCC
LVRM1_0127_E03.b : AGCAGAGGGGGACCGCTGGGCTTCCTGGGGTACTGTCCC*AGGAGAACGGGCTGTGGGCC
LVR01_0035_F01.b : AGCGGAGGGGACCCGCTGGGCTTCCTGGGGTACTGTCCCCAGGAGAACGCGCTGTGGCCC
LVRM1_0018_F11.b : AGCAGAGGGGACCCGCTGGGCTTCCTGGGGTACTGTCCCCAGGAGAACGCGCTGTGGCCC
20110601C-004361 : AGCCTGACGGTGAAGGAGCATCTGGAGGTGTTCGCCGCCGTGAA*GGGGCTGAGGAAAGC
---------+---------+---------+---------+---------+---------+ 808
LVR01_0045_A01.b : AGCCTGACGGTGAAGGAGCATCTGGAGGTGTTCGCCGCCGTGAA*GGGGCTGAGGAAAGC
SKNB1_0035_H12.b : AGCCTGACGGTGAAGGAGCATTTGGAGGTGTTCGCCGCCGTGAA*GGGGCTGAGGAAAGC
LVRM1_0127_E03.b : AGCCTGACGGGGAAGGAGCA*CTGGAGGTGTTCGCCGCCGTGAAagggtgaggaaaggga
LVR01_0035_F01.b : AGCCTGACGGTGAAGGAGCATTTGGAGGTGTTCGCCGCCGTGAA*GGGGCTGAGGAAAGC
LVRM1_0018_F11.b : AGCCTGACGGTGAAGGAGCATCTGGAGGTGTTCGCCGCCGTGAAGGGGGCTGAGGAAAGC
20110601C-004361 : GGACGCTGCCGCGGCCATCGC*GCGGTTGGTGGATGCGCTCAAGCTGCAGGACCAGCTGA
---------+---------+---------+---------+---------+---------+ 867
LVR01_0045_A01.b : GGACGCCACCGCGGCCATCGC*GCGGTTGGTGGATGCGCTCAAGCTGCANGACCAGCTGA
SKNB1_0035_H12.b : GGACGCTGCCGCGGCCATCGCNGAGGTTGGTGGATGCGCTCAAGCTGCAGGACCAGCTGA
LVRM1_0127_E03.b : agccacgcggccattgcgcgtgtgtggatgcgctcagctggatgacn
LVR01_0035_F01.b : GGACGCTGCCGCGGCCATCCC*GAGGTTGGTGGATGCGCTCAAGCTGCAGGACCAGCTGA
LVRM1_0018_F11.b : GGACGCCACCGCGGCTATCGC*GCGGTTGGgggctgcngtcaggcgacaggcgccgggaa
20110601C-004361 : AGCTCCCCACGAAGGCCTTGTCCGAGGGAATAAAGAGGAAGCTGTGCTTCGCGCTGAGCA
---------+---------+---------+---------+---------+---------+ 927
LVR01_0045_A01.b : AGCTCCCCACGAAGGCCTTGTCCGAGGGGATAAAGAGGAAGCTGTGCTTCGCGCTGAGCA
SKNB1_0035_H12.b : AGCTCCCCACGAAGGCCTTGTCCGAGGGAATAAAGAGGAAGCTGTGCTTCGCGCTGAGCA
LVRM1_0127_E03.b :
LVR01_0035_F01.b : AGCTCCCCACGAAGGCCTTGTCCGAGGGAATAAAGAGGAAGCTGTGCTTCGCGCTGAGCA
LVRM1_0018_F11.b : ggcgcgcacgggagtccgaccaacggagtgagaggaggcgccctttccgctttagagacc
20110601C-004361 : TCCTGG*GAAACCCGTCGGTGGTGCTTCTGGACGAGCCGTCCACGGGGATGGACCCCGAG
---------+---------+---------+---------+---------+---------+ 986
LVR01_0045_A01.b : TCCTGNNGAAACCCGTCAGTGGTGCTTCTGGgacgagccgtccacgggggatggaccccg
SKNB1_0035_H12.b : TCCTGG*GAAACCCGTCGGTGGTGCTTCTGGACGAGCCGTCCACGGGGATGGACCCCGAG
LVRM1_0127_E03.b :
LVR01_0035_F01.b : TCCTGG*GAAACCCGTCGGTGGTGCTTCTGGACGAGCCGTCCACGGGGATGGACCCCGAG
LVRM1_0018_F11.b : tagcagtgggcagcgcagccgcgtgacggcgttactgcctaggagccggccgcgcgccgc
20110601C-004361 : GGGCAGCAGCAGATGTGGCAGGCGATCCGGGCCACCCTTCAAAAACACGAAAAGGGGGCC
---------+---------+---------+---------+---------+---------+ 1046
LVR01_0045_A01.b : agggggcaccagccagatggtggcaggcgattcggggccaccttcaaaaaacacggaaaa
SKNB1_0035_H12.b : GGGCAGCAGCAGATGTGGCAGGCGATCCGGGCCACCttcaaaancacggagaggggcgcc
LVRM1_0127_E03.b :
LVR01_0035_F01.b : GGGCAGCAGCAGATGTGGGCGGCGATCCGGGCCACCCTTCAAAAACACGAAAAGGGGGCC
LVRM1_0018_F11.b : atatgagaccgcgggcgcgcgcgtggaaacatgcgagtaggtgcgaggcccgagagtgcg
20110601C-004361 : CCCTCCTGACCACACACTACATGGGCCGAGGCCGAGGCCCGGTGGGACCGCGTGGGCCTC
---------+---------+---------+---------+---------+---------+ 1106
LVR01_0045_A01.b : gggggcggccctccctgaccaacccacctaaaatgggcccaaaggcccaaaggcccgtgt
SKNB1_0035_H12.b : ttcctgacacacactacatggccgaggccgaaggcgtgtgtgaccgcntggccatcatgg
LVRM1_0127_E03.b :
LVR01_0035_F01.b : CCCTCCTGACCACACACTACATGGGCCGAGGCCGAGGCCCGGTGGGACCGCGTGGGCCTC
LVRM1_0018_F11.b : cttaaacgccgccgccccggggagggtggtgacgcgcgtgcggcgatgtccgggggcgag
20110601C-004361 : ATGGTGGTCCGGGAAGGTTGAAAATGATTGGGGCCATCCACCACCTAAAGAACCAATTTG
---------+---------+---------+---------+---------+---------+ 1166
LVR01_0045_A01.b : ttggtaaccccg
SKNB1_0035_H12.b : ttgtccgaaagctgaaatgtattggggccatccgcacctaaaaaaacctttttcaaggac
LVRM1_0127_E03.b :
LVR01_0035_F01.b : ATGGTGGTCCGGGAAGGTTGAAAATGATTGGGGCCATCCACCACCTAAAGAACCAATTTG
LVRM1_0018_F11.b : t
20110601C-004361 : GCAA........................................................
---------+---------+---------+---------+---------+---------+ 1170
LVR01_0045_A01.b :
SKNB1_0035_H12.b : tacctgctgggaaaggaagtggagacccccccacgggaggagacccccccaggcggattt
LVRM1_0127_E03.b :
LVR01_0035_F01.b : GCAAaaaataacctgctgggaaaaaaaaaggggaaaccccccaccaagggaaaaaaatct
LVRM1_0018_F11.b :
20110601C-004361 : ............................................................
---------+---------+---------+---------+---------+---------+ 1170
LVR01_0045_A01.b :
SKNB1_0035_H12.b : tccaggcttttcccccagcggcagg
LVRM1_0127_E03.b :
LVR01_0035_F01.b : ccccaccgaaatttctcagggtttttccccccggccccacgggcagggaaaggtcctcgc
LVRM1_0018_F11.b :
20110601C-004361 : ............................................................
---------+---------+---------+---------+---------+---------+ 1170
LVR01_0045_A01.b :
SKNB1_0035_H12.b :
LVRM1_0127_E03.b :
LVR01_0035_F01.b : cctcctaaaggtcctaccaaattgccctggggaaaaaatgtcccgacctttttaccccca
LVRM1_0018_F11.b :
20110601C-004361 : ............................................................
---------+---------+---------+---------+---------+---------+ 1170
LVR01_0045_A01.b :
SKNB1_0035_H12.b :
LVRM1_0127_E03.b :
LVR01_0035_F01.b : cggcttttcttctaaaattaaaaaataaaagtgttataaccaaccccccttttcacccct
LVRM1_0018_F11.b :
20110601C-004361 : ............................................................
---------+---------+---------+---------+---------+---------+ 1170
LVR01_0045_A01.b :
SKNB1_0035_H12.b :
LVRM1_0127_E03.b :
LVR01_0035_F01.b : cggagaaggggataaaaagccccccctcctcctacccatccccccccccctccctgggga
LVRM1_0018_F11.b :
20110601C-004361 : ............................................................
---------+---------+---------+---------+---------+---------+ 1170
LVR01_0045_A01.b :
SKNB1_0035_H12.b :
LVRM1_0127_E03.b :
LVR01_0035_F01.b : actaacccggggtttttttttctccccctgggtggaaaggactct
LVRM1_0018_F11.b :