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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-004916

Length: 933

Sequence:  [FASTA format sequence]
GACACAGGAA GCGGACCCCG TGCGAGGCCA GCGGGGCCGG TGGAGACGTG TAAGTTAGAG
AGGTGAAGGG AGCCCTTTTC CGGGGTTGTG GGCTAGCAAG GCCGCCGCAA GGTACCTCCG
CACATACCTC TTGCCCGCCC AGCAGCCAAC AGTGTGGGGC GGCGGCGACG GCGACGGCCG
GGGCTGGGAG GGCTGGCGGC CGGGGTCCCA GCCATGGCCG AGTCTGTGGA GCGGCTGCAG
CAGCGGATCC AGGAACTGGA ACGGGAACTG GCCCAGGAGA GAAGTCGCCA GGTCGTGGGG
GACCGCGACG GAAAAGGCGG TCGGACCCGC ATCGAGAAGA TGAGCCCGGA GGTGGTGGAC
TCCAACCCCT ACAGCCGGCT GATGGCATTG AAACGAATGG GAATTGTAAG CGACTATGAG
AAAATCCGTA CCTTTGCTGT AGCAATAGTA GGTGTTGGTG GAGTTGGCAG TGTGACTGCT
GAAATGCTGA CCAGATGTGG CATTGGTAAG TTGCTACTCT TTGACTATGA CAAGGTGGAA
CTGGCCAATA TGAACAGACT TTTCTTCCAA CCTCATCAAG CAGGATTAAG TAAAGTTCAA
GCAGCAGAAC ATACTTTGAG GAACATTAAT CCTGATGTTC TTTTTGAAGT GCACAACTAC
AACATAACCA CAGTAGAAAA CTTTGAACAC TTCATGGATA GAATAAGTAA TGGTGGATTA
GAAGAAGGAA AACCTGTTGA CCTCGTTCTT AGTTGTGTGG ACAATTTTGA AGCTCGAATG
ACAATAAATA CAGCTTGTAA TGAGCTTGGA CAAACATGGA TGGAGTCTGG GGTCAGTGAA
AATGCAGTAT CAGGGCATAT ACAGCTCATA ATTCCTGGGA GATCTGCTTG TTTTGCGTGT
GCTCCACCAC TTGTAGTTGC TGNCAATATT GAT

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		UBA5	ubiquitin-like modifier-activating enzyme 5 isoform 1 [Homo sapiens].	431	e-121	O
		UBA5	ubiquitin-like modifier-activating enzyme 5 isoform 2 [Homo sapiens].	346	2e-95	O
		MOCS3	adenylyltransferase and sulfurtransferase MOCS3 [Homo sapiens].	55.5	7e-08	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Uba5	ubiquitin-like modifier-activating enzyme 5 [Mus musculus].	401	e-112	O
		Uba2	SUMO-activating enzyme subunit 2 [Mus musculus].	56.2	3e-08	O
		Mocs3	adenylyltransferase and sulfurtransferase MOCS3 [Mus musculus].	55.8	5e-08	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC485664	PREDICTED: similar to ubiquitin-activating enzyme E1-domain containing 1 isoform 1 [Canis familiaris].	428	e-120	O
		LOC485928	PREDICTED: similar to Molybdenum cofactor synthesis protein 3 (Molybdopterin synthase sulfurylase) (MPT synthase sulfurylase) [Canis familiaris].	55.1	9e-08	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		UBA5	ubiquitin-like modifier-activating enzyme 5 [Bos taurus].	431	e-121	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100521223	PREDICTED: ubiquitin-like modifier-activating enzyme 5-like [Sus scrofa].	261	5e-70	O
		LOC100156531	PREDICTED: hypothetical protein LOC100156531 [Sus scrofa].	171	7e-43	O
		MOCS3	adenylyltransferase and sulfurtransferase MOCS3 [Sus scrofa].	58.5	5e-09	O

Alignment:      TOP

20110601C-004916 : ...........................................................G
                   ---------+---------+---------+---------+---------+---------+ 1
HTMT1_0092_B03.b : ttttagaaggtacgaggxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxG
HTMT1_0064_F11.b : tttttggacagtagaggcagtagtattaaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxG
BFLT1_0118_A08.b :                   nncccgtcagcgnacgxxxxxxxxxxxxxxxxxxxxxxxxxx
HTMT1_0131_F12.b :                                           tttccctagtxxxxxxxx


20110601C-004916 : ACACAGGAAGCGGACCCCGTGCGAGGCCAGCGGGGCCGGTGGAGACGTGTAAGTTAGAGA
                   ---------+---------+---------+---------+---------+---------+ 61
HTMT1_0092_B03.b : ACACAGGAAGCGGACCCCGTGCGAGGCCAGCGGGGCCGGTGGAGACGTGTAAGTTAGAGA
HTMT1_0064_F11.b : ACACAGGAAGCGGACCCCGTGCGAGGCCAGCGGGGCCGGTGGAGACGTGTAAGTTAGAGA
BFLT1_0118_A08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxcgatCGGGGCCGGTGGAGACGTGTAAGTTAGAGA
HTMT1_0131_F12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxggacgtgccccataaAGA


20110601C-004916 : GGTGAAGGGAGCCCTTTTCCGGGGTTGTGGGCTAGCAAGGCCGCCGCAAGGTACCTCCGC
                   ---------+---------+---------+---------+---------+---------+ 121
HTMT1_0092_B03.b : GGTGAAGGGAGCCCTTTTCCGGGGTTGTGGGCTAGCAAGGCCGCCGCAAGGTACCTCCGC
HTMT1_0064_F11.b : GGTGAAGGGAGCCCTTTTCCGGGGTTGTGGGCTAGCAAGGCCGCCGCAAGGTACCTCCGC
BFLT1_0118_A08.b : GGTGAAGGGAGCCCTTTTCCGGGGTTGTGGGCTAGCAAGGCCGCCGCAAGGTACCTCCGC
HTMT1_0131_F12.b : GGTGAAGGGAGCCCTTTTCCGGGGTTGTGGGCTATCAAGGCCGCCGCAAGGTACCTCCGC


20110601C-004916 : ACATACCTCTTGCCCGCCCAGCAGCCAACAGTGTGGGGCGGCGGCGACGGCGACGGCCGG
                   ---------+---------+---------+---------+---------+---------+ 181
HTMT1_0092_B03.b : ACATACCTCTTGCCCGCCCAGCAGCCAACAGTGTGGGGCGGCGGCGACGGCGACGGCCGG
HTMT1_0064_F11.b : ACATACCTCTTGCCCGCCCAGCAGCCAACAGTGTGGGGCGGCGGCGACGGCGACGGCCGG
BFLT1_0118_A08.b : ACATACCTCTTGCCCGCCCAGCAGCCAACAGTGTGGGGCGGCGGCGACGGCGACGGCCGG
HTMT1_0131_F12.b : ACATACCTCTTGCCCGCCCAGCAGCCAACAGTGTGGGGCGGCGGCGACGGCGACGGCCGG


20110601C-004916 : GGCTGGGAGGGCTGGCGGCCGGGGTCCCAGCCATGGCCGAGTCTGTGGAGCGGCTGCAGC
                   ---------+---------+---------+---------+---------+---------+ 241
HTMT1_0092_B03.b : GGCTGGGAGGGCTGGCGGCCGGGGTCCCAGCCATGGCCGAGTCTGTGGAGCGGCTGCAGC
HTMT1_0064_F11.b : GGCTGGGAGGGCTGGCGGCCGGGGTCCCAGCCATGGCCGAGTCTGTGGAGCGGCTGCAGC
BFLT1_0118_A08.b : GGCTGGGAGGGCTGGCGGCCGGGGTCCCAGCCATGGCCGAGTCTGTGGAGCGGCTGCAGC
HTMT1_0131_F12.b : GGCTGGGAGGGCTGGCGGCCGGGGTCCCAGCCATGGCCGAGTCTGTGGAGCGGCTGCAGC


20110601C-004916 : AGCGGATCCAGGAACTGGAACGGGAACTGGCCCAGGAGAGAAGTCGCCAGGTCGTGGGGG
                   ---------+---------+---------+---------+---------+---------+ 301
HTMT1_0092_B03.b : AGCGGATCCAGGAACTGGAACGGGAACTGGCCCAGGAGAGAAGTCGCCAGGTCGTGGGGG
HTMT1_0064_F11.b : AGCGGATCCAGGAACTGGAACGGGAACTGGCCCAGGAGAGAAGTCGCCAGGTCGTGGGGG
BFLT1_0118_A08.b : AGCGGATCCAGGAACTGGAACGGGAACTGGCCCAGGAGAGAAGTCGCCAGGTCCTGGGGG
HTMT1_0131_F12.b : AGCGGATCCAGGAACTGGAACGGGAACTGGCCCAGGAGAGAAGTCGCCAGGTCCTGGGGG


20110601C-004916 : ACCGCGACGGAAAAGGCGGTCGGACCCGCATCGAGAAGATGAGCCCGGAGGTGGTGGACT
                   ---------+---------+---------+---------+---------+---------+ 361
HTMT1_0092_B03.b : ACCGCGACGGAAAAGGCGGTCGGACCCGCATCGAGAAGATGAGCCCGGAGGTGGTGGACT
HTMT1_0064_F11.b : ACCGCGACGGAAAAGGCGGTCGGACCCGCATCGAGAAGATGAGCCCGGAGGTGGTGGACT
BFLT1_0118_A08.b : ACCGCGACGGGAAAGGCGGTCGGACCCGCATCGAGAAGATGAGCCCGGAGGTGGTGGACT
HTMT1_0131_F12.b : ACCGCGACGGAAAAGGCGGTCGGACCCGCATCGAGAAGATGAGCCCGGAGGTGGTGGACT


20110601C-004916 : CCAACCCCTACAGCCGGCTGATGGCATTGAAACGAATGGGAATTGTAAGCGACTATGAGA
                   ---------+---------+---------+---------+---------+---------+ 421
HTMT1_0092_B03.b : CCAACCCCTACAGCCGGCTGATGGCATTGAAACGAATGGGAATTGTAAGCGACTATGAGA
HTMT1_0064_F11.b : CCAACCCCTACAGCCGGCTGATGGCATTGAAACGAATGGGAATTGTAAGCGACTATGAGA
BFLT1_0118_A08.b : CCAACCCCTACAGCCGGCTGATGGCATTGAAACGAATGGGAATTGTAAGCGACTATGAGA
HTMT1_0131_F12.b : CCAACCCCTACAGCCGGCTGATGGCATTGAAACGAATGGGAATTGTAAGCGACTATGAGA


20110601C-004916 : AAATCCGTACCTTTGCTGTAGCAATAGTAGGTGTTGGTGGAGTTGGCAGTGTGACTGCTG
                   ---------+---------+---------+---------+---------+---------+ 481
HTMT1_0092_B03.b : AAATCCGTACCTTTGCTGTAGCAATAGTAGGTGTTGGTGGAGTTGGCAGTGTGACTGCTG
HTMT1_0064_F11.b : AAATCCGTACCTTTGCTGTAGCAATAGTAGGTGTTGGTGGAGTTGGCAGTGTGACTGCTG
BFLT1_0118_A08.b : AAATCCGTACCTTTGCTGTAGCAATAGTAGGTGTTGGTGGAGTTGGCAGTGTGACTGCTG
HTMT1_0131_F12.b : AAATCCGTACCTTTGCTGTAGCAATAGTAGGTGTTGGTGGAGTTGGCAGTGTGACTGCTG


20110601C-004916 : AAATGCTGACCAGATGTGGCATTGGTAAGTTGCTACTCTTTGACTATGACAAGGTGGAAC
                   ---------+---------+---------+---------+---------+---------+ 541
HTMT1_0092_B03.b : AAATGCTGACCAGATGTGGCATTGGTAAGTTGCTACTCTTTGACTATGACAAGGTGGAAC
HTMT1_0064_F11.b : AAATGCTGACCAGATGTGGCATTGGTAAGTTGCTACTCTTTGACTATGACAAGGTGGAAC
BFLT1_0118_A08.b : AAATGCTGACCAGATGTGGCATTGGTAAGTTGCTACTCTTTGACTATGACAAGGTGGAAC
HTMT1_0131_F12.b : AAATGCTGACCAGATGTGGCATTGGTAAGTTGCTACTCTTTGACTATGACAAGGTGGAAC


20110601C-004916 : TGGCCAATATGAACAGACTTTTCTTCCAACCTCATCAAGCAGGATTAAGTAAAGTTCAAG
                   ---------+---------+---------+---------+---------+---------+ 601
HTMT1_0092_B03.b : TGGCCAATATGAACAGACTTTTCTTCCAACCTCATCAAGCAGGATTAAGTAAAGTTCAAG
HTMT1_0064_F11.b : TGGCCAATATGAACAGACTTTTCTTCCAACCTCATCAAGCAGGATTAAGTAAAGTTCAAG
BFLT1_0118_A08.b : TGGCCAATATGAACAGACTTTTCTTCCAACCTCATCAAGCAGGATTAAGTAAAGTTCAAG
HTMT1_0131_F12.b : TGGCCAATATGAACAGACTTTTCTTCCAACCTCATCAAGCAGGATTAAGTAAAGTTCAAG


20110601C-004916 : CAGCAGAACATACTTTGAGGAACATTAATCCTGATGTTCTTTTTGAAGTGCACAACTACA
                   ---------+---------+---------+---------+---------+---------+ 661
HTMT1_0092_B03.b : CAGCAGAACATACTTTGAGGAACATTAATCCTGATGTTCTTTTTGAAGTGCACAACTACA
HTMT1_0064_F11.b : CAGCAGAACATACTTTGAGGAACATTAATCCTGATGTTCTTTTTGAAGTGCACAACTACA
BFLT1_0118_A08.b : CAGCAGAACATACTTTGAGGAACATTAATCCTGATGTTCTTTTTGAAGTGCACAACTACA
HTMT1_0131_F12.b : CAGCAGAACATACTTTGAGGAACATTAATCCTGATGTTCTTTTTGAAGTGCACAACTACA


20110601C-004916 : ACATAACCACAGTAGAAAACTTTGAACACTTCATGGATAGAATAAGTAATGGTGGATTAG
                   ---------+---------+---------+---------+---------+---------+ 721
HTMT1_0092_B03.b : ACATAACCACAGTAGAAAACTTTGAACACTTCATGGATAGAATAAGTAATGGTGGATTAG
HTMT1_0064_F11.b : ACATAACCACAGTAGAAAACTTTGAACACTTCATGGATAGAATAAGTAATGGTGGATTAG
BFLT1_0118_A08.b : ACATAACCACAGTAGAAAACTTTGAACACTTCATGGATAGAATAAGTAATGGTGGATTAG
HTMT1_0131_F12.b : ACATAACCACAGTAGAAAACTTTGAACACTTCATGGATAGAATAAGTAATGGTGGATTAG


20110601C-004916 : AAGAAGGAAAACCTGTTGACCTCGTTCTTAGTTG*TGTGGACAATTTTGAAGCTCGAATG
                   ---------+---------+---------+---------+---------+---------+ 780
HTMT1_0092_B03.b : AAGAAGGAAAACCTGTTGACCTCGTTCTTAGTTG*TGTGGACAATTTTGAAGCTCGAATG
HTMT1_0064_F11.b : AAGAAGGAAAACCTGTTGACCTCGTTCTTAGTTG*TGTGGACAATTTTGAAGCTCGAATG
BFLT1_0118_A08.b : AAGAAGGAAAACCTGTTGACCTCGTCCTTAGTTG*TGTGGACAATTTTGAAGCTCGAAAT
HTMT1_0131_F12.b : AAGAAGGAAAACCTGTTGACCTCGTTCTTAGTTGGTGTGGACAATTTTGAAACTCGAATG


20110601C-004916 : ACAATAAATACAGCTTGTAATGAGCTTGGACAAACATGGATGGAGTCTGGGGTCAGTGAA
                   ---------+---------+---------+---------+---------+---------+ 840
HTMT1_0092_B03.b : ACAATAAATACAGCTTGTAATGAGCTTGGACAAACATGGATGGAGTCTGGGGTCAGTGAA
HTMT1_0064_F11.b : ACAATAAATACAGCTTGTAATGAGCTTGGACAAACATGGATGGAGTCTGGGGTCAGTGAA
BFLT1_0118_A08.b : GACATAAATACAGCTTGTAATGAGCTTGGACAAACATGGATGGAGTCTGGGGTCAGTgaa
HTMT1_0131_F12.b : ACAATAAATACAGCTTGTAATGACCTTGGACAAACATGGATGGAGTCTGGGGTCAGTtga


20110601C-004916 : AATGCAGTATCAGGGCATATACAGCTCATAATTCCTGGGAGATCTGCTTGTTTTGCGTGT
                   ---------+---------+---------+---------+---------+---------+ 900
HTMT1_0092_B03.b : AATGCAGTATCAGGGCATATACAGCTCATAattcctggagaatctgcttgntttgcgtgt
HTMT1_0064_F11.b : AATGCAGTATCAGGGCATATACAGCTCATAATTCCTGGGAGATCTGCTTGTTTTGCGTGT
BFLT1_0118_A08.b : aatgcagtatcagggcatatacagctcatattccctgagaatctgcttgttttgcgtgtg
HTMT1_0131_F12.b : aaatgcatatcaggggctatccagctcataattcctggaaaaactgcttggtttggctgt


20110601C-004916 : GCTCCACCACTTGTAGTTGCTGNCAATATTGAT...........................
                   ---------+---------+---------+---------+---------+---------+ 933
HTMT1_0092_B03.b : gctccaacacttgtagttgctgcaaatatggatgagaagactctgaaacgagaaggtgtt
HTMT1_0064_F11.b : GCTCCACCACTTGTAGTTGCTGNCAATATTGATgaagagactctgaaacgagaaggtgtt
BFLT1_0118_A08.b : ctcaccacttgtagttgctgcaaattatgatgagaagactccgaacaagaagtgtttgtg
HTMT1_0131_F12.b : ggctccacactttgatttgctgcaaatattgatgaaaagactcctgaaccaaaaggtgtt


20110601C-004916 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 933
HTMT1_0092_B03.b : tgtgcacccagtcttcttaccactatgggaatggttgctgggatcttggaacaaaatgaa
HTMT1_0064_F11.b : tgtgcangcagtcttcctaccactatgggaatggttgctgggatcttggtacaaatggat
BFLT1_0118_A08.b : cagccagtcttcctacacttatgaaatgtttgcggaattctgaaaaaaaggataaaagtt
HTMT1_0131_F12.b : tgtgcagccatacttcccaccattaggggagtggttgctgggatcttgctaaaaaaggta


20110601C-004916 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 933
HTMT1_0092_B03.b : ttaaagttctgttaaatttggaaccgttaattttaccctggaacaacgcaaggcaggatt
HTMT1_0064_F11.b : taaagtttccgttaaatttggggaccggtaattttaccttggaaacacgcaatgcgggat
BFLT1_0118_A08.b : ccgttaaatttgggaacggtaattttacctgggaacaaaccaaggaggatttttttcaac
HTMT1_0131_F12.b : taaaagtctccgttaaattttgacaccgtaatttttaccctggaaacaaccaaaggcggg


20110601C-004916 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 933
HTMT1_0092_B03.b : tttcccacaaggtctaaaagccaaatccccgggggatacagaatttgtcggacccccgga
HTMT1_0064_F11.b : tttttccaaatggtccttgaaccaatccccctgggttaacaaattggcggaaccccggaa
BFLT1_0118_A08.b : tagtctaaaaaaccaatcctctgtgaaaaaaaatttgcgggaacccccggaaatataaaa
HTMT1_0131_F12.b : attttttcccaatatttctataaagcctaaccctcgggggaaaaacaaatttcgtgaacg


20110601C-004916 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 933
HTMT1_0092_B03.b : aaataaaaaaagggtgcccctttcccaccggagggtttcaaaaaaaaagaaatcctgaac
HTMT1_0064_F11.b : aaaataaaaagggggccctttccccaacgggaggtgtttaaaagaaaaaaaaccttaaaa
BFLT1_0118_A08.b : aagggtaccccttttccaaccgggggtttcaaagagaaaaaatatcttaacaaaaggggg
HTMT1_0131_F12.b : ccccggaaaaaataaaatagggtgtacccttttcacaacaggagggtttcttgaaaaaga


20110601C-004916 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 933
HTMT1_0092_B03.b : aaggaggggattgattgttccagagtctaaagaaacaaaaatttcgggcattccgattcc
HTMT1_0064_F11.b : cccgggggggtttatttttttaagttctaaaaaaaaaaaaacttcggcctcttcct   
BFLT1_0118_A08.b : gttatattggaacgaggttcaaaaaaaacaaaatctccgggctctctctatccgagaaat
HTMT1_0131_F12.b : aatataatgcgaagacaagggcggggttcttatgttccccaagttccaaaagaaacaaat


20110601C-004916 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 933
HTMT1_0092_B03.b : ggaagaaagggaaacatccccaaaaaaaatttccctaaacagggaattgggaagtaaacc
HTMT1_0064_F11.b :                                                             
BFLT1_0118_A08.b : atagggaaatctccccaaaaaaaaattcctcaaaaggggaaattgggacaggaaaacccg
HTMT1_0131_F12.b : attctgggccatttcacatctgaagaaattaggcgctcttctcccacaaaaaaatattct


20110601C-004916 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 933
HTMT1_0092_B03.b : ccccaaaaaaatatagccccc                                      
HTMT1_0064_F11.b :                                                             
BFLT1_0118_A08.b : ccaaaaaaatattaagacccctttttttttgtttttctcttaaaaaaaaaaaagaggtgt
HTMT1_0131_F12.b : cttataataggtaattgtgggattagacatctctggcaaaaaaatataatagacccctta


20110601C-004916 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 933
HTMT1_0092_B03.b :                                                             
HTMT1_0064_F11.b :                                                             
BFLT1_0118_A08.b : cccg                                                       
HTMT1_0131_F12.b : tttctttgtttctctctcgtctaacaaaaaatattctctgtaaataaataaaaataatac


20110601C-004916 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 933
HTMT1_0092_B03.b :                                                             
HTMT1_0064_F11.b :                                                             
BFLT1_0118_A08.b :                                                             
HTMT1_0131_F12.b : tacccgcctctggtggtttcgcatccctactn