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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-008988

Length: 992

Sequence [FASTA format sequence]
TTTCCCCTCT GGCCTGGGCC GTCGCCATTG CCGAAGGCTC CCTGCCCTCC CCTCCCGGCG
CCCGCGGGGC TCGGCGGCCG CCCGGCCTAG CAGTAGAAGC CGCGGCGCTC CAGCGCGGCT
CCACTTCCCG CCCCGCTTCC CCTTCCCTCC CCTCCCCGCC CCGCGTCGCT CTCTTGCTCG
GGGCGGCTCC TGATCCCGCC AGGAGCTCGG CCGGAGGCTC CTCGCTGGGG CGGGGACCTT
TCCTCGCCTG GGGCCGTATC ATAATTCTGA ATCATGTCTG ATAACGGAGA ACTGGAAGAC
AAGCCTCCAG CACCCCCTGT GCGAATGAGC AGTACCATTT TTAGTACTGG AGGCAAAGAC
CCTTTGTCAG CCAATCACAG TTTGAAACCT TTGCCCTCTG TTCCAGAGGA AAAAAAGCCC
AGGAATAAAA TCATCTCTAT ATTCTCAAGC ACAGAGAAAG GAAGTAAGAA GAAAGAGAAG
GAAAGGCCAG AAATTTCTCC TCCGTCTGAT TTTGAGCACA CCATCCATGT TGGTTTTGAT
GCTGTCACTG GAGAATTCAC TGGCATGCCA GAACAGTGGG CTCGATTATT ACAGACCTCC
AATATCACCA AACTAGAGCA AAAGAAGAAT CCTCAGGCTG TGCTGGATGT CTTAAAGTTC
TACGACTCCA ACACAGTGAA GCAGAAATAC CTGAGCTTTA CTCCTCCTGG TAAGACATCA
GACCTGGTAA AAGGCTGGCT TAAATGGGAT CACAGAGTTG GGGAGCACTT GTAGATAAAA
AGATTGCTTC TGGAAAAATC AAAAGCTAAG CTGCGGTGGT TGCCTCAGCT TTTTCCCCTG
CGTAGATCTG TCTTTTGTAA ACTGATGTGG GCAGCTCTTA GGCATAATTT GGAATCTGGG
GGATTATATC AATTTCCTGG TTTTGCCAAA AGTGGGTGTT TTGGGCTTTT GGTGCCTCTT
CACTGCTTTT TCATGAGTCC CAGCATAAAT GG


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPAK2serine/threonine-protein kinase PAK 2 [Homo sapiens]. 2662e-71O
Contig/Assembly ProteinPAK1serine/threonine-protein kinase PAK 1 isoform 2 [Homo sapiens]. 1793e-45O
Contig/Assembly ProteinPAK1serine/threonine-protein kinase PAK 1 isoform 1 [Homo sapiens]. 1793e-45O
Contig/Assembly ProteinPAK3serine/threonine-protein kinase PAK 3 isoform a [Homo sapiens]. 1764e-44O
Contig/Assembly ProteinPAK3serine/threonine-protein kinase PAK 3 isoform a [Homo sapiens]. 1764e-44O
Contig/Assembly ProteinPAK3serine/threonine-protein kinase PAK 3 isoform a [Homo sapiens]. 1764e-44O
Contig/Assembly ProteinPAK3serine/threonine-protein kinase PAK 3 isoform d [Homo sapiens]. 1664e-41O
Contig/Assembly ProteinPAK3serine/threonine-protein kinase PAK 3 isoform c [Homo sapiens]. 1632e-40O
Contig/Assembly ProteinPAK3serine/threonine-protein kinase PAK 3 isoform b [Homo sapiens]. 1571e-38O
Contig/Assembly ProteinPAK6serine/threonine-protein kinase PAK 6 [Homo sapiens]. 50.42e-06O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPak2serine/threonine-protein kinase PAK 2 [Mus musculus]. 2685e-72O
Contig/Assembly ProteinPak1serine/threonine-protein kinase PAK 1 [Mus musculus]. 1793e-45O
Contig/Assembly ProteinPak3serine/threonine-protein kinase PAK 3 isoform D [Mus musculus]. 1763e-44O
Contig/Assembly ProteinPak3serine/threonine-protein kinase PAK 3 isoform D [Mus musculus]. 1763e-44O
Contig/Assembly ProteinPak3serine/threonine-protein kinase PAK 3 isoform C [Mus musculus]. 1663e-41O
Contig/Assembly ProteinPak3serine/threonine-protein kinase PAK 3 isoform B [Mus musculus]. 1641e-40O
Contig/Assembly ProteinPak3serine/threonine-protein kinase PAK 3 isoform A [Mus musculus]. 1587e-39O
Contig/Assembly ProteinPak4serine/threonine-protein kinase PAK 4 [Mus musculus]. 50.82e-06O
Contig/Assembly ProteinPak6serine/threonine-protein kinase PAK 6 [Mus musculus]. 50.42e-06O
Contig/Assembly ProteinPak6serine/threonine-protein kinase PAK 6 [Mus musculus]. 50.42e-06O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC612814PREDICTED: similar to Serine/threonine-protein kinase PAK 2 (p21-activated kinase 2) (PAK-2) isoform 6 [Canis familiaris]. 2732e-73O
Contig/Assembly ProteinLOC612814PREDICTED: similar to Serine/threonine-protein kinase PAK 2 (p21-activated kinase 2) (PAK-2) isoform 9 [Canis familiaris]. 2715e-73O
Contig/Assembly ProteinLOC612814PREDICTED: similar to Serine/threonine-protein kinase PAK 2 (p21-activated kinase 2) (PAK-2) isoform 8 [Canis familiaris]. 2715e-73O
Contig/Assembly ProteinLOC612814PREDICTED: similar to Serine/threonine-protein kinase PAK 2 (p21-activated kinase 2) (PAK-2) isoform 7 [Canis familiaris]. 2715e-73O
Contig/Assembly ProteinLOC612814PREDICTED: similar to Serine/threonine-protein kinase PAK 2 (p21-activated kinase 2) (PAK-2) isoform 3 [Canis familiaris]. 2715e-73O
Contig/Assembly ProteinLOC612814PREDICTED: similar to Serine/threonine-protein kinase PAK 2 (p21-activated kinase 2) (PAK-2) isoform 4 [Canis familiaris]. 2671e-71O
Contig/Assembly ProteinLOC612814PREDICTED: similar to Serine/threonine-protein kinase PAK 2 (p21-activated kinase 2) (PAK-2) isoform 5 [Canis familiaris]. 2662e-71O
Contig/Assembly ProteinLOC612814PREDICTED: similar to Serine/threonine-protein kinase PAK 2 (p21-activated kinase 2) (PAK-2) (Gamma-PAK) (p62-PAK) isoform 1 [Canis familiaris]. 2655e-71O
Contig/Assembly ProteinLOC612814PREDICTED: similar to Serine/threonine-protein kinase PAK 2 (p21-activated kinase 2) (PAK-2) isoform 2 [Canis familiaris]. 2592e-69O
Contig/Assembly ProteinLOC492067PREDICTED: similar to Serine/threonine-protein kinase PAK 3 (p21-activated kinase 3) (PAK-3) (Beta-PAK) (p65-PAK) isoform 12 [Canis familiaris]. 1857e-47O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPAK2similar to serine/threonine kinase [Bos taurus]. 2685e-72O
Contig/Assembly ProteinPAK1serine/threonine-protein kinase PAK 1 [Bos taurus]. 1793e-45O
Contig/Assembly ProteinPAK3PREDICTED: p21-activated kinase 3 [Bos taurus]. 1764e-44O
Contig/Assembly ProteinPAK3PREDICTED: p21-activated kinase 3 isoform 1 [Bos taurus]. 1664e-41O
Contig/Assembly ProteinPAK3PREDICTED: p21-activated kinase 3 [Bos taurus]. 1632e-40O
Contig/Assembly ProteinPAK3serine/threonine-protein kinase PAK 3 [Bos taurus]. 1571e-38O
Contig/Assembly ProteinPAK3PREDICTED: p21 protein (Cdc42/Rac)-activated kinase 3 [Bos taurus]. 1163e-26O
Contig/Assembly ProteinLOC100337181PREDICTED: p21-activated kinase 3-like [Bos taurus]. 55.86e-08O
Contig/Assembly ProteinLOC100336246PREDICTED: p21-activated kinase 4 [Bos taurus]. 50.82e-06O
Contig/Assembly ProteinPAK4serine/threonine-protein kinase PAK 4 [Bos taurus]. 50.82e-06O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC100511837PREDICTED: serine/threonine-protein kinase PAK 2-like [Sus scrofa]. 2683e-72O
Contig/Assembly ProteinLOC100525766PREDICTED: serine/threonine-protein kinase PAK 1-like, partial [Sus scrofa]. 1792e-45O
Contig/Assembly ProteinLOC100622334PREDICTED: serine/threonine-protein kinase PAK 3-like, partial [Sus scrofa]. 1577e-39O
Contig/Assembly ProteinPAK4PREDICTED: serine/threonine-protein kinase PAK 4 isoform 2 [Sus scrofa]. 50.41e-06O
Contig/Assembly ProteinPAK4PREDICTED: serine/threonine-protein kinase PAK 4 isoform 1 [Sus scrofa]. 50.41e-06O
Contig/Assembly ProteinLOC100627576PREDICTED: serine/threonine-protein kinase PAK 6-like [Sus scrofa]. 50.41e-06O


Assembly Members: 8      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
ADR010003H08ADR01_0003_H08.bDB781827 
MLN010059A02MLN01_0059_A02.bCJ012245 
OVRM10077H06OVRM1_0077_H06.bBP154266 AK348141
OVRM10195B10OVRM1_0195_B10.bBP456342 
OVRM10212C04OVRM1_0212_C04.bBP456829 AK236653
SMG010047C08SMG01_0047_C08.bFS717363 
THY010037H08THY01_0037_H08.bBP168876 
THY010040F12THY01_0040_F12.bBP166751 AK351583

  

SNPs: 3      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
256A030.429B-
G400.571
345C030.375BSAGC/S
T500.625AGT/S
374A510.750MNAAT/N
G020.250AGT/S


Alignment:      TOP

20110601C-008988 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
OVRM1_0077_H06.b : agttgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0212_C04.b : gagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
THY01_0040_F12.b : ttttgggggacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0195_B10.b : nagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxx
ADR01_0003_H08.b : nnnttgtgxxxxxxxxxxxxxxxxxxxxxxx
MLN01_0059_A02.b : nnnnggctaggactatnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
THY01_0037_H08.b : ggggtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SMG01_0047_C08.b :
20110601C-008988 : TTTCCCCTCTGGCCTGGGCCGTCGCCATTGCCGAAGGCTCCCTGCCCTCCCCTCCCGGCG
---------+---------+---------+---------+---------+---------+ 60
OVRM1_0077_H06.b : TTTCCCCTCTGGCCTGGGCCGTCGCCATTGCCGAAGGCTCCCTGCCCTCCCCTcccggcg
OVRM1_0212_C04.b : ttccccCTCTGGCCTGGGCCGTCGCCATTGCCGAAGGCTCCCTGCCCTCCCCTcccggcg
THY01_0040_F12.b : xxxxxxxxxxxxxxxxxxxxxxxxCCATTGCCGAAGGCTCCCTGCCCTCCCCTcccggcg
OVRM1_0195_B10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxTTGCCGAAGGCTCCCTGCCCTCCCCTcccggcg
ADR01_0003_H08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxTTGCCGAAGGCTCCCTGCCCTCCCCTcccggcg
MLN01_0059_A02.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxTTGCCGAAGGCTCCCTGCCCTCCCCTcccggcg
THY01_0037_H08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxTTGCCGAAGGCTCCCTGCCCTCCCCTcccggcg
SMG01_0047_C08.b : nggttcttnnnnggctaaagcagcggtxxxx
20110601C-008988 : CCCGCGGGGCTCGGCGGCCGCCCGGCCTAGCAGTAGAAGCCGCGGCGCTCCAGCGCGGCT
---------+---------+---------+---------+---------+---------+ 120
OVRM1_0077_H06.b : cccgcggggctcggcggccgcccggccTAGCAGTAGAAGCCGCGGCGCTCCAGCGCGGct
OVRM1_0212_C04.b : cccgcggggctcggcggccgcccggccTAGCAGTAGAAGCCGCGGCGCTCCAGCGCGGct
THY01_0040_F12.b : cccgcggggctcggcggccgcccggccTAGCAGTAGAAGCCGCGGCGCTCCAGCGCGGct
OVRM1_0195_B10.b : cccgcggggctcggcggccgcccggccTAGCAGTAGAAGCCGCGGCGCTCCAGCGCGGct
ADR01_0003_H08.b : cccgcggggctcggcggccgcccggccTAGCAGTAGAAGCCGCGGCGCTCCAGCGCGGct
MLN01_0059_A02.b : cccgcggggctcggcggccgcccggccTAGCAGTAGAAGCCGCGGCGCTCCAGCGCGGct
THY01_0037_H08.b : cccgcggggctcggcggccgcccggccTAGCAGTAGAAGCCGCGGCGCTCCAGCGCGGct
SMG01_0047_C08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTAGAAGCCGCGGCGCTCCAGCGCGGct
20110601C-008988 : CCACTTCCCGCCCCGCTTCCCCTTCCCTCCCCTCCCCGCCCCGCGTCGCTCTCTTGCTCG
---------+---------+---------+---------+---------+---------+ 180
OVRM1_0077_H06.b : ccacttcccgccccgcttccccttccctcccctccccgccccGCGTCGCTCTCTTGCTCG
OVRM1_0212_C04.b : ccacttcccgccccgcttccccttccctcccctccccgccccGCGTCGCTCTCTTGCTCG
THY01_0040_F12.b : ccacttcccgccccgcttccccttccctcccctccccgccccGCGTCGCTCTCTTGCTCG
OVRM1_0195_B10.b : ccacttcccgccccgcttccccttccctcccctccccgccccGCGTCGCTCTCTTGCTCG
ADR01_0003_H08.b : ccacttcccgccccgcttccccttccctcccctccccgccccGCGTCGCTCTCTTGCTCG
MLN01_0059_A02.b : ccacttcccgccccgcttccccttccctcccctccccgccccGCGTCGCTCTCTTGCTCG
THY01_0037_H08.b : ccacttcccgccccgcttccccttccctcccctccccgccccGCGTCGCTCTCTTGCTCG
SMG01_0047_C08.b : ccacttcccgccccgcttccccttccctcccctccccgccccGCGTCGCTCTCTTGCTCG
20110601C-008988 : GGGCGGCTCCTGATCCCGCCAGGAGCTCGGCCGGAGGCTCCTCGCTGGGGCGGGGACCTT
---------+---------+---------+---------+---------+---------+ 240
OVRM1_0077_H06.b : GGGCGGCTCCTGATCCCGCCAGGAGCTCGGCCGGAGGCTCCTCGCTGGGGCGGGGACCTT
OVRM1_0212_C04.b : GGGCGGCTCCTGATCCCGCCAGGAGCTCGGCCGGAGGCTCCTCGCTGGGGCGGGGACCTT
THY01_0040_F12.b : GGGCGGCTCCTGATCCCGCCAGGAGCTCGGCCGGAGGCTCCTCGCTGGGGCGGGGACCTT
OVRM1_0195_B10.b : GGGCGGCTCCTGATCCCGCCAGGAGCTCGGCCGGAGGCTCCTCGCTGGGGCGGGGACCTT
ADR01_0003_H08.b : GGGCGGCTCCTGATCCCGCCAGGAGCTCGGCCGGAGGCTCCTCGCTGGGGCGGGGACCTT
MLN01_0059_A02.b : GGGCGGCTCCTGATCCCGCCAGGAGCTCGGCCGGAGGCTCCTCGCTGGGGCGGGGACCTT
THY01_0037_H08.b : GGGCGGCTCCTGATCCCGCCAGGAGCTCGGCCGGAGGCTCCTCGCTGGGGCGGGGACCTT
SMG01_0047_C08.b : GGGCGGCTCCTGATCCCGCCAGGAGCTCGGCCGGAGGCTCCTCGCTGGGGCGGGGACCTT
20110601C-008988 : TCCTCGCCTGGGGCCGTATCATAATTCTGAATCATGTCTGATAACGGAGAACTGGAAGAC
---------+---------+---------+---------+---------+---------+ 300
OVRM1_0077_H06.b : TCCTCGCCTGGGGCCATATCATAATTCTGAATCATGTCTGATAACGGAGAACTGGAAGGC
OVRM1_0212_C04.b : TCCTCGCCTGGGGCCATATCATAATTCTGAATCATGTCTGATAACGGAGAACTGGAAGAC
THY01_0040_F12.b : TCCTCGCCTGGGGCCGTATCATAATTCTGAATCATGTCTGATAACGGAGAACTGGAAGAC
OVRM1_0195_B10.b : TCCTCGCCTGGGGCCATATCATAATTCTGAATCATGTCTGATAACGGAGAACTGGAAGAC
ADR01_0003_H08.b : TCCTCGCCTGGGGCCGTATCATAATTCTGAATCATGTCTGATAACGGAGAACTGGAAGAC
MLN01_0059_A02.b : TCCTCGCCTGGGGCCGTATCATAATTCTGAATCATGTCTGATAACGGAGAACTGGAAGAC
THY01_0037_H08.b : TCCTCGCCTGGGGCCGTATCATAATTCTGAATCATGTCTGATAACGGAGAACTGGAAGAC
SMG01_0047_C08.b : TCCTCGCCTGGGGCCGTATCATAATTCTGAATCATGTCTGATAACGGAGAACTGGAAGAC
20110601C-008988 : AAGCCTCCAGCACCCCCTGTGCGAATGAGCAGTACCATTTTTAGTACTGGAGGCAAAGAC
---------+---------+---------+---------+---------+---------+ 360
OVRM1_0077_H06.b : AAGCCTCCAGCACCCCCTGTGCGAATGAGCAGTACCATTTTTAGCACTGGAGGCAAAGAC
OVRM1_0212_C04.b : AAGCCTCCAGCACCCCCTGTGCGAATGAGCAGTACCATTTTTAGCACTGGAGGCAAAGAC
THY01_0040_F12.b : AAGCCTCCAGCACCCCCTGTGCGAATGAGCAGTACCATTTTTAGTACTGGAGGCAAAGAC
OVRM1_0195_B10.b : AAGCCTCCAGCACCCCCTGTGCGAATGAGCAGTACCATTTTTAGCACTGGAGGCAAAGAC
ADR01_0003_H08.b : AAGCCTCCAGCACCCCCTGTGCGAATGAGCAGTACCATTTTTAGTACTGGAGGCAAAGAC
MLN01_0059_A02.b : AAGCCTCCAGCACCCCCTGTGCGAATGAGCAGTACCATTTTTAGTACTGGAGGCAAAGAC
THY01_0037_H08.b : AAGCCTCCAGCACCCCCTGTGCGAATGAGCAGTACCATTTTTAGTACTGGAGGCAAAGAC
SMG01_0047_C08.b : AAGCCTCCAGCACCCCCTGTGCGAATGAGCAGTACCATTTTTAGTACTGGAGGCAAAGAC
20110601C-008988 : CCTTTGTCAGCCAATCACAGTTTGAAACCTTTGCCCTCTGTTCCAGAGGAAAAAAAGCCC
---------+---------+---------+---------+---------+---------+ 420
OVRM1_0077_H06.b : CCTTTGTCAGCCAGTCACAGTTTGAAACCTTTGCCCTCTGTTCCAGAGGAAAAAAAGCCC
OVRM1_0212_C04.b : CCTTTGTCAGCCAGTCACAGTTTGAAACCTTTGCCCTCTGTTCCAGAGGAAAAAAAGCCC
THY01_0040_F12.b : CCTTTGTCAGCCAATCACAGTTTGAAACCTTTGCCCTCTGTTCCAGAGGAAAAAAAGCCC
OVRM1_0195_B10.b : CCTTTGTCAGCCAATCACAGTTTGAAACCTTTGCCCTCTGTTCCAGAGG*AAAAAAGCCC
ADR01_0003_H08.b : CCTTTGTCAGCCAATCACAGTTTGAAACCTTTGCCCTCTGTTCCAGAGGAAAAAAAGCCC
MLN01_0059_A02.b : CCTTTGTCAGCCAATCACAGTTTGAAACCTTTGCCCTCTGTTCCAGAGGAAAAAAAGCCC
THY01_0037_H08.b : CCTTTGTCAGCCAATCACAGTTTGAAACCTTTGCCCTCTGTTCCAGAGGAAAAAAAGCCC
SMG01_0047_C08.b : CCTTTGTCAGCCAATCACAGTTTGAAACCTTTGCCCTCTGTTCCAGAGGAAAAAAAGCCC
20110601C-008988 : AGGAATAAAATCATCTCTATATTCTCAAGCACAGAGAAAGGAAGTAAGAAGAAAGAGAAG
---------+---------+---------+---------+---------+---------+ 480
OVRM1_0077_H06.b : AGGAATAAAATCATCTCTATATTCTCAAGCACAGAGAAAGGAAGTAAGAAGAAAGAGAAG
OVRM1_0212_C04.b : AGGAATAAAATCATCTCTATATTCTCAAGCACAGAGAAAGGAAGTAAGAAGAAAGAGAAG
THY01_0040_F12.b : AGGAATAAAATCATCTCTATATTCTCAAGCACAGAGAAAGGAAGTAAGAAGAAAGAGAAG
OVRM1_0195_B10.b : AGGAATAAAATCATCTCTATATTCTCAAGCACAGAGAAAGGAAGTAAGAAGAAAGAGAAG
ADR01_0003_H08.b : AGGAATAAAATCATCTCTATATTCTCAAGCACAGAGAAAGGAAGTAAGAAGAAAGAGAAG
MLN01_0059_A02.b : AGGAATAAAATCATCTCTATATTCTCAAGCACAGAGAAAGGAAGTAAGAAGAAAGAGAAG
THY01_0037_H08.b : AGGAATAAAATCATCTCTATATTCTCAAGCACAGAGAAAGGAAGTAAGAAGAAAGAGAAG
SMG01_0047_C08.b : AGGAATAAAATCATCTCTATATTCTCAAGCACAGAGAAAGGAAGTAAGAAGAAAGAGAAG
20110601C-008988 : GAAAGGCCAGAAATTTCTCCTCCGTCTGATTTTGAGCACACCATCCATGTTGGTTTTGAT
---------+---------+---------+---------+---------+---------+ 540
OVRM1_0077_H06.b : GAAAGGCCAGAAATTTCTCCTCCGTCTGATTTTGAGCACACCATCCATGTTGGTTTTGAT
OVRM1_0212_C04.b : GAAAGGCCAGAAATTTCTCCTCCGTCTGATTTTGAGCACACCATCCATGTTGGTTTTGAT
THY01_0040_F12.b : GAAAGGCCAGAAATTTCTCCTCCGTCTGATTTTGAGCACACCATCCATGTTGGTTTTGAT
OVRM1_0195_B10.b : GAAGGGCCAGAAATTTCTCCTCCGTCTGATTTTGAGCACACCATCCATGTTGGTTTTGAT
ADR01_0003_H08.b : GAAAGGCCAGAAATTTCTCCTCCGTCTGATTTTGAGCACACCATCCATGTTGGTTTTGAT
MLN01_0059_A02.b : GAAAGGCCAGAAATTTCTCCTCCGTCTGATTTTGAGCACACCATCCATGTTGGTTTTGAT
THY01_0037_H08.b : GAAAGGCCAGAAATTTCTCCTCCGTCTGATTTTGAGCACACCATCCATGTTGGTTTTGAT
SMG01_0047_C08.b : GAAAGGCCAGAAATTTCTCCTCCGTCTGATTTTGAGCGCACCATCCATGTTGGTTTTGAT
20110601C-008988 : GCTGTCACTGGAGAATTCACTGGCATGCCAGAACAGTGGGCTCGATTATTACAGACCTCC
---------+---------+---------+---------+---------+---------+ 600
OVRM1_0077_H06.b : GCTGTCACTGGAGAATTCACTGGCATGCCAGAACAGTGGGCTCGATTATTACAGACCTCC
OVRM1_0212_C04.b : GCTGTCACTGGAGAATTCACTGGCATGCCAGAACAGTGGGCTCGATTATTACAGACCTCC
THY01_0040_F12.b : GCTGTCACTGGAGAATTCACTGGCATGCCAGAACAGTGGGCTCCATTATTACAGACCTCC
OVRM1_0195_B10.b : GCTGTCACTGGAGAATTCACTGGCATGCCAGAACAGTGGGCTCGATTATTACAGACCTCC
ADR01_0003_H08.b : GCTGTCACTGGAGAATTCACTGGCATGCCAGAACAGTGGGCTCGATTATTACAGACCTCC
MLN01_0059_A02.b : GCTGTCACTGGAGAATTCACTGGCATGCCAGAACAGTGGGCTCGATTATTACAGACCTCC
THY01_0037_H08.b : GCTGTCACTGGAGAATTCACTGGCATGCCAGAACAGTGGGCTCGATTATTACAGACCTCC
SMG01_0047_C08.b : GCTGTCACTGGAGAATTCACTGGCATGCCAGAACAGTGGGCTCGATTATTACAGACCTCC
20110601C-008988 : AATATCACCAAACTAGAGCAAAAGAAGAATCCTCAGGCTGTGCTGGATGTCTTAAAGTTC
---------+---------+---------+---------+---------+---------+ 660
OVRM1_0077_H06.b : NATATCACCAAACTAGAGCAAAAGAAGAATCCTCAGGCTGTGCTGGATGTCTTANAGTTC
OVRM1_0212_C04.b : AATATCACCAAACTAGAGCAAAAGAAGAATCCTCAGGCTGTGCTGGATGTCTTAAAGTTC
THY01_0040_F12.b : AATATCACCAAACTAGAGCAAAcagaagaatccctcaggcttgtgctggatggtcttaaa
OVRM1_0195_B10.b : AATATCACCAAACTAGAGCAAAAGAAGAATCCTCAGGCTGTGCTGGATGTCTTAAAGTTC
ADR01_0003_H08.b : AATATCACCAAACTAGAGCAAAAGAAGAATCCTCAGGCTGTGCTGGATGTCTTAAAGTTC
MLN01_0059_A02.b : AATATCACCAAACTAGAGCAAAAGAAGAATCCTCAGGCTGTGCTGGATGTCTTAAAGTTC
THY01_0037_H08.b : AATATCACCAAACTAGAGCAAAAGAAGAATCCTCAGGCTGTGCTGGATGTCTTAAAGTTC
SMG01_0047_C08.b : AATATCACCAAACTAGAGCAAAAGAAGAATCCTCAGGCTGTGCTGGATGTCTTAAAGTTC
20110601C-008988 : TACGACTCCAACACAGTGAAGCAGAAATACCTGAGCTTTACTCCTCCTGGTAAGACATCA
---------+---------+---------+---------+---------+---------+ 720
OVRM1_0077_H06.b : TACGACTCCCACACAGTGAAGCAGAAATACCTGAGCTTTACTCCTCCTGGTAAGACATCA
OVRM1_0212_C04.b : TACGACTCCAACACAGTGAAGCAGAAATACCTGAGCTTTACTCCTCCTGGGTAGACATCA
THY01_0040_F12.b : gattctacgacttccaaacccaatggaaccacaaaatacctggagcctttactccccccc
OVRM1_0195_B10.b : TACGACTCCCACACAGTGAAGCAGAAATACCTGAGCTTTACTCCTCCTGGGTAGACATCA
ADR01_0003_H08.b : TACGACTCCNACACAGTGAAGCAGAAATACCTGAGCTTTACTCCCTCT*GTAAGACATCA
MLN01_0059_A02.b : TACGACTCCAACACAGTGAAGCAGAAATACCTGAGCTTTACTCCTCCTGGTAAGACATCA
THY01_0037_H08.b : TACGACTCCAACACAGTGAAGCAGAAATACCTGAGCTTTACTCCTCCTGGTAAGACATCA
SMG01_0047_C08.b : TACGACTCCAACACAGTGAAGCAGAAATACCTGAGCTTTACTCCTCCTGGTAAGACATCA
20110601C-008988 : GACCTGGTAAAAGGCTGG*CTTAAATGGGATCACAGAGTTGGGGAGCACTTGTAGATAAA
---------+---------+---------+---------+---------+---------+ 779
OVRM1_0077_H06.b : GACCTGGTNAAAGGCTGG*CTTNAATGGGATCACAGAGNTGGGGAGCACTTGTAGATAAA
OVRM1_0212_C04.b : GACCTGGTAAAAGGCTGG*CTTAAATGGGn
THY01_0040_F12.b : tgctaaaaaattcaaacctggtaaaagggctggcttaaaatgggaatccacgagttgcgg
OVRM1_0195_B10.b : GAACTGGTAAAAGGCTGG*CTCTAATGGGATCACAGAGTTGGGGAGCACTTGTAGA
ADR01_0003_H08.b : GACCTGGTAAAAGGCTGGGCTTAAATGGGATCACAGAGTTTGGGAGCACTTGAGAATAAA
MLN01_0059_A02.b : GACCTGGTAAAAGGCTGG*CTTAAATGGGATCACAGAGTTGGGGAGCACTTGTAGATAAA
THY01_0037_H08.b : GACCTGGTAAAAGGCTGG*CTTAAATGGGATCACAGAGTTGGGGAGCACTTGTAGATAAA
SMG01_0047_C08.b : GACCTGGTAAAAGGCTGG*CTTAAATGGGATCACAGAGTTGGGGAGCACTTGTAGATAAA
20110601C-008988 : AAGATTGCTTCTGGAAAAATCAAAAGCTAAGCTGCGGTGGTTGCCTCAGCTTTTTCCCCT
---------+---------+---------+---------+---------+---------+ 839
OVRM1_0077_H06.b : A
OVRM1_0212_C04.b :
THY01_0040_F12.b : gagcacccttgtagaataaaaaaattggtttccggaaaaaaatcaaaaccccagccgccg
OVRM1_0195_B10.b :
ADR01_0003_H08.b : AAGA*TGCTTCTGGAAAAATCAAAAGCTAAACTGCGGTGGTTGCCTCACCTTTTcccccg
MLN01_0059_A02.b : AAGATTGCTTCTGGGAAAATCAAAAGCTAAGCTGCGGTGGTTGCCTCAGCTTTTTCCCCT
THY01_0037_H08.b : AAGATTGCTTCTGGAAAAATCAAAAGCTAAGCTGCGGTGGTTGCCTCAGCTTTTTCCCCT
SMG01_0047_C08.b : AAGATTGCTTCTGGGAAAATCAAAAGCTAAGCTGCGGTGGTTGCCTCAGCTTTTTCCCCT
20110601C-008988 : GCGTAGATCTGTCTTTTGTAAACTGATGTGGGCAGCTCTTAGGCATAATTTGGAATCTGG
---------+---------+---------+---------+---------+---------+ 899
OVRM1_0077_H06.b :
OVRM1_0212_C04.b :
THY01_0040_F12.b : cggggttgcccccacgttttttcccccggcccaaaaactcgcttttttgaaaacggatgg
OVRM1_0195_B10.b :
ADR01_0003_H08.b : ccgaaatctgtcttttgaaaactgaagtgggcaactcttaaggcaaatttggaatcctgg
MLN01_0059_A02.b : GCGTAGATCTGTCTTTTGTAAACTGATGTGGGCAGCTCTTAGGCATAATTTGGAATCTGG
THY01_0037_H08.b : GCGTAGATCTGTCTTTTGTAAACTGATGTGGGCAGCTCCTAGGCATAATTTTGGAATCTG
SMG01_0047_C08.b : GCGTAGATCTGTCTTTTGTAAACTGATGTGGGCAGCTCTTAGGCATAATTTGAAATCTGG
20110601C-008988 : GGGATTATATCAATTTCCTGGTTTTGCCAAAAGTGGGTGTTTTGGGCTTTTGGTGCCTCT
---------+---------+---------+---------+---------+---------+ 959
OVRM1_0077_H06.b :
OVRM1_0212_C04.b :
THY01_0040_F12.b : gggggcagccccttaaacctctaatttgcccatcttgggggaattaaatccaattttccc
OVRM1_0195_B10.b :
ADR01_0003_H08.b : gaataaaacaatttcctgggtttggccaaaatggggggttggggcctttgtggcccctcc
MLN01_0059_A02.b : GGGATTATATCAATTTCCTGGTTTTGCCAAAAGTGggtggtttggtcctttggtggcccc
THY01_0037_H08.b : GGGATTATATCAATTTCCTGGTTTTGCCAAAAGTGggggttttggtcttttgttggctct
SMG01_0047_C08.b : GGGA*TATATCAATTTCCTGGTTTTGCCAAAAGTGGGTGTTTTGGGCTTTTGGTGCCTCT
20110601C-008988 : TCACTGCTTTTTCATGAGTCCCAGCATAAATGG...........................
---------+---------+---------+---------+---------+---------+ 992
OVRM1_0077_H06.b :
OVRM1_0212_C04.b :
THY01_0040_F12.b : tgggtttttcgccaccagcgggggcggcttttgggcctttctctctctgccctctctccc
OVRM1_0195_B10.b :
ADR01_0003_H08.b : acgcctttcaaagggttccagccataaaatggaaagagggtgattttaaggctggttcta
MLN01_0059_A02.b : tcactggcttttcaatgaattccgcaataaaatgaaaagaagctggattataggcatgtt
THY01_0037_H08.b : tccctggtttttcaatgaatttccacaaaaaaaatgggaaagaggcttgatttttaaggg
SMG01_0047_C08.b : TCACTGCTTTTTCATGAGTCCCAGCATAAATGGaaagaggctgatttataggcatggtca
20110601C-008988 : ............................................................
---------+---------+---------+---------+---------+---------+ 992
OVRM1_0077_H06.b :
OVRM1_0212_C04.b :
THY01_0040_F12.b : tcgctttttcccctgaactctcccacccctataataacgggaaacaaaaggggctagtat
OVRM1_0195_B10.b :
ADR01_0003_H08.b : actaggaaacctttttgttatggggccaggaaagggttccttactttattaagccttaaa
MLN01_0059_A02.b : catactaggaatatctttattgttagtggggcaggaaaagggtgctatactaattataag
THY01_0037_H08.b : atggtccctacttaggaaaattctttattggtaagggggggcgaggaaaaggggttggtt
SMG01_0047_C08.b : tacttagatatctttatggtaatggggcaggaaaagggtgctatacatatttaagcatat
20110601C-008988 : ............................................................
---------+---------+---------+---------+---------+---------+ 992
OVRM1_0077_H06.b :
OVRM1_0212_C04.b :
THY01_0040_F12.b : tttaaccggcccatgtgttcactccctcaagcaaaaaactccttttttattgtggctcca
OVRM1_0195_B10.b :
ADR01_0003_H08.b : actttgaaaaaaaaggtttggtccaccaaaagtaaaattgattccctttgggcagggggt
MLN01_0059_A02.b : catataacctttgaataaaaaaggtttgctctcccaaaatttgaacctggatttcccctt
THY01_0037_H08.b : attacttttataaaaaaaaataaaaaaaatttttaaaaaaaaaaaaaagggttttggttc
SMG01_0047_C08.b : aactttaaataaaaaagtttggcacctcaaagtgaacctgaattcctttggggctagggg
20110601C-008988 : ............................................................
---------+---------+---------+---------+---------+---------+ 992
OVRM1_0077_H06.b :
OVRM1_0212_C04.b :
THY01_0040_F12.b : tgggggggggacccggcgaaagaagggggggcgtcctctccaaactcaatatataatcat
OVRM1_0195_B10.b :
ADR01_0003_H08.b : aaaaaccccacaggattatggggtttaaatcaatcccggccccttatgggttaaaattgg
MLN01_0059_A02.b : gggggcaggggttaacaacccccaacaggattatgggggttcaaaataaacccttgcccc
THY01_0037_H08.b : ctacctcccaaaaaaatttgaaaaaaatttttgaaattttccccccctttttgg
SMG01_0047_C08.b : tacgaccccaaaagatcttggggttctaaatcatactggccccttaaggggtgaagattg
20110601C-008988 : ............................................................
---------+---------+---------+---------+---------+---------+ 992
OVRM1_0077_H06.b :
OVRM1_0212_C04.b :
THY01_0040_F12.b : acaaaaccccacatctaacaaacccctactttgacaaccaaaatcaaaaaaaaaaaaaca
OVRM1_0195_B10.b :
ADR01_0003_H08.b : gtttcacgggcgggtgaaggtaacacacccaaaaaaaatttttgggtgttcggggggggg
MLN01_0059_A02.b : ccttaaggggtagggactt
THY01_0037_H08.b :
SMG01_0047_C08.b : gtttcccggccttggtggattgaaaccccctaaacccttttttgggtttcagggccgggg
20110601C-008988 : ............................................................
---------+---------+---------+---------+---------+---------+ 992
OVRM1_0077_H06.b :
OVRM1_0212_C04.b :
THY01_0040_F12.b : cactttcttttttttctgctcctctctctcatttccaatcacaacaaactacactacgct
OVRM1_0195_B10.b :
ADR01_0003_H08.b : aagtcccttttacccgccaaaaattttgtgttgcacccaaaaaaaaaaaaaaaaaaaaga
MLN01_0059_A02.b :
THY01_0037_H08.b :
SMG01_0047_C08.b : tagccccttgccccggccaaatttcaggtgtggggccccaaaaaaaaaaaaaaagccttt
20110601C-008988 : ............................................................
---------+---------+---------+---------+---------+---------+ 992
OVRM1_0077_H06.b :
OVRM1_0212_C04.b :
THY01_0040_F12.b : tgagaacaacaacatcac
OVRM1_0195_B10.b :
ADR01_0003_H08.b : gaagtttctctagggggccctatattctggggcaatac
MLN01_0059_A02.b :
THY01_0037_H08.b :
SMG01_0047_C08.b : ttcctatggggccgccctaatattcgggggcatatccccccttttgaaggcctcaaggaa
20110601C-008988 : ............................................................
---------+---------+---------+---------+---------+---------+ 992
OVRM1_0077_H06.b :
OVRM1_0212_C04.b :
THY01_0040_F12.b :
OVRM1_0195_B10.b :
ADR01_0003_H08.b :
MLN01_0059_A02.b :
THY01_0037_H08.b :
SMG01_0047_C08.b : aaaaaagggcgccttttcgggagagatggtgttttaaactctgtgggtggccccccaccg
20110601C-008988 : ............................................................
---------+---------+---------+---------+---------+---------+ 992
OVRM1_0077_H06.b :
OVRM1_0212_C04.b :
THY01_0040_F12.b :
OVRM1_0195_B10.b :
ADR01_0003_H08.b :
MLN01_0059_A02.b :
THY01_0037_H08.b :
SMG01_0047_C08.b : aaaatttttgtattttttt