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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-013019

Length: 1,558

Sequence [FASTA format sequence]
GTTCCCATGT TACTGGTTAC AGAGTGACCA CTACTCCTAA AAATGGCTCA GGACCATCAA
AAACGAAAAC TGTTGGTCCA GATCAAACAG AAATGACAAT AGAAGGCTTG CAGCCCACAG
TGGAGTATGT GGTTAGTGTC TACGCTCAGA ATCAAAACGG AGAGAGTCAG CCTCTGGTTC
AGACAGCGGT AACCACCATT CCTGCACCAA CCAACCTGAA GTTCACTCAG GTAACACCCA
CAAGCCTGAC TGCCCAGTGG ACAGCCCCCA ACGTTCAGCT CACTGGGTAT CGAGTGCGGG
TGACCCCCAA GGAGAAGACC GGGCCAATGA AGGAAATCAA CCTTGCTCCT GATAGCTCCT
CTGTGGTCGT ATCAGGACTC ATGGTGGCCA CCAAGTATGA AGTGAGCATC TATGCTCTTA
AGGACACTTT GACAAGCAGA CCAGCTCAGG GAGTTGTCAC GACCCTGGAG AATGTCAGTC
CTCCAAGAAG GGCCCGGGTG ACAGATGCTA CTGAGACCAC CATCACCATT AGCTGGAGGA
CCAAGACTGA GACGATCACC GGCTTCCAAG TTGATGCCGT CCCAGCCAAT GGCCAGACTC
CAATCCAGAG AACCATCAAG CCAGATGTCA GGAGCTACAC CATCACAGGT TTACAACCCG
GCACTGACTA CAAGATCTAC TTGTACACCC TGAATGACAA TGCCCGGAGC TCCCCTGTGG
TCATCGATGC CTCCACTGCC ATCGATGCAC CATCCAACTT GCGTTTCCTG GCCACCACAC
CCAATTCCTT GTTGGTATCA TGGCAGCCAC CCCGTGCCAA GATTACTGGT TACATCATCA
AGTATGAGAA GCCTGGGTCC CCTCCCAGAG AAGTGGTCCC TCGGCCCCGC CCTGGTGTCA
CAGAAGCTAC TATTACTGGT CTGGAACCAG CAACCGAGTA CACAATCCAG GTCATTGCCC
TCAAGAACAA TCAGAAGAGT GAGCCTCTGA TCGGGAGGAA AAGGACAGGA CAAGAAGCTC
TCTCTCAGAC AACCATCTCA TGGACCCCAT TCCAGGAAAG CTCTGAATAT ATCATTTCAT
GTCATCCCGT GGGCATTGAT GAAGAACCCT TGCAGTTCCG AGTTCCTGGA ACTTCTGCTA
GTGCCACCTT GACGGGTCTC ACCAGAGGTG CCACCTACAA CATCATAGTG GAGGCACTAA
AAGACCAGAA GAGGCACAAG ATTCGGGAGG AGGTGGTTAC TGTGGGCAAT TCTGTTGACC
AAGGCCTAAG CCAACCCACG GATGACTCGT GCTTCGACCC CTACACGGTT TCCCATTATG
CCATCGGAGA AGAGTGGGAG CGATTATCTG AATCTGGCTT TAAGCTCTCG TGCCAGTGCT
TAGGCTTTGG CAGTGGTCAT TTCAGATGTG ATTCATCTAA ATGGTGCCAT GACAATGGTG
TGAATTACAA GATTGGAGAG AAGTGGGATC TTCAGGGAGA GAATGGCCAG ATGATGATCT
ACGGATGTCT TGGAAATGGA CTACGCCAAT TCAAGTGTGA TGCCCATGAA GTGACGTG


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinFN1fibronectin isoform 6 preproprotein [Homo sapiens]. 9440.0
Contig/Assembly ProteinFN1fibronectin isoform 4 preproprotein [Homo sapiens]. 8030.0
Contig/Assembly ProteinFN1fibronectin isoform 5 preproprotein [Homo sapiens]. 600e-171
Contig/Assembly ProteinFN1fibronectin isoform 3 preproprotein [Homo sapiens]. 516e-146
Contig/Assembly ProteinFN1fibronectin isoform 1 preproprotein [Homo sapiens]. 516e-146
Contig/Assembly ProteinTNCtenascin precursor [Homo sapiens]. 1612e-39
Contig/Assembly ProteinTNNtenascin-N precursor [Homo sapiens]. 1566e-38
Contig/Assembly ProteinTNRtenascin-R precursor [Homo sapiens]. 1403e-33
Contig/Assembly ProteinCOL12A1collagen alpha-1(XII) chain long isoform precursor [Homo sapiens]. 1242e-28
Contig/Assembly ProteinTNXBtenascin-X isoform 1 precursor [Homo sapiens]. 1198e-27


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinFn1fibronectin precursor [Mus musculus]. 499e-141
Contig/Assembly ProteinTnntenascin-N precursor [Mus musculus]. 1734e-43
Contig/Assembly ProteinTnctenascin [Mus musculus]. 1551e-37
Contig/Assembly ProteinTnrtenascin-R precursor [Mus musculus]. 1496e-36
Contig/Assembly ProteinCol12a1collagen alpha-1(XII) chain [Mus musculus]. 1235e-28
Contig/Assembly ProteinCol14a1collagen alpha-1(XIV) chain [Mus musculus]. 1143e-25
Contig/Assembly ProteinTnxbtenascin-X [Mus musculus]. 1135e-25
Contig/Assembly ProteinCol7a1collagen alpha-1(VII) chain precursor [Mus musculus]. 1126e-25
Contig/Assembly ProteinPtprsreceptor-type tyrosine-protein phosphatase S precursor [Mus musculus]. 921e-18
Contig/Assembly ProteinDscaml1Down syndrome cell adhesion molecule-like protein 1 homolog [Mus musculus]. 87.82e-17


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinFN1PREDICTED: similar to fibronectin 1 isoform 1 preproprotein [Canis familiaris]. 517e-146
Contig/Assembly ProteinTNCtenascin [Canis lupus familiaris]. 1635e-40
Contig/Assembly ProteinLOC490335PREDICTED: similar to tenascin N [Canis familiaris]. 1535e-37
Contig/Assembly ProteinLOC490334PREDICTED: similar to tenascin R (restrictin, janusin) isoform 1 [Canis familiaris]. 1465e-35
Contig/Assembly ProteinLOC490334PREDICTED: similar to tenascin R (restrictin, janusin) isoform 2 [Canis familiaris]. 1403e-33
Contig/Assembly ProteinLOC481881PREDICTED: similar to alpha 1 type XII collagen long isoform precursor isoform 1 [Canis familiaris]. 1281e-29
Contig/Assembly ProteinLOC481881PREDICTED: similar to alpha 1 type XII collagen long isoform precursor isoform 3 [Canis familiaris]. 1281e-29
Contig/Assembly ProteinCOL7A1collagen alpha-1(VII) chain [Canis lupus familiaris]. 1096e-24
Contig/Assembly ProteinLOC475085PREDICTED: similar to collagen, type XIV, alpha 1 [Canis familiaris]. 1051e-22
Contig/Assembly ProteinLOC481881PREDICTED: similar to alpha 1 type XII collagen short isoform precursor isoform 2 [Canis familiaris]. 1004e-21


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinFN1fibronectin [Bos taurus]. 521e-148
Contig/Assembly ProteinTNNtenascin-N [Bos taurus]. 1603e-39
Contig/Assembly ProteinTNNPREDICTED: tenascin-R-like [Bos taurus]. 1595e-39
Contig/Assembly ProteinTNCtenascin C [Bos taurus]. 1472e-35
Contig/Assembly ProteinTNRPREDICTED: tenascin R (restrictin, janusin)-like [Bos taurus]. 1451e-34
Contig/Assembly ProteinTNRtenascin-R [Bos taurus]. 1451e-34
Contig/Assembly ProteinCOL12A1collagen alpha-1(XII) chain [Bos taurus]. 1251e-28
Contig/Assembly ProteinTNXBtenascin-X [Bos taurus]. 1165e-26
Contig/Assembly ProteinCOL7A1PREDICTED: collagen, type VII, alpha 1 [Bos taurus]. 1081e-23
Contig/Assembly ProteinCOL7A1PREDICTED: collagen, type VII, alpha 1 [Bos taurus]. 1081e-23


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinFN1PREDICTED: fibronectin isoform 3 [Sus scrofa]. 9880.0
Contig/Assembly ProteinFN1PREDICTED: fibronectin isoform 1 [Sus scrofa]. 624e-179
Contig/Assembly ProteinFN1PREDICTED: fibronectin isoform 2 [Sus scrofa]. 528e-150
Contig/Assembly ProteinLOC100520506PREDICTED: tenascin-N-like [Sus scrofa]. 1595e-39
Contig/Assembly ProteinTNCtenascin precursor [Sus scrofa]. 1572e-38
Contig/Assembly ProteinTNRPREDICTED: tenascin-R [Sus scrofa]. 1403e-33
Contig/Assembly ProteinCOL12A1PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(XII) chain [Sus scrofa]. 1163e-26
Contig/Assembly ProteinTN-Xtenascin-X [Sus scrofa]. 1157e-26
Contig/Assembly ProteinCOL14A1PREDICTED: collagen alpha-1(XIV) chain [Sus scrofa]. 1041e-22
Contig/Assembly ProteinCOL7A1PREDICTED: collagen alpha-1(VII) chain [Sus scrofa]. 1033e-22


Assembly Members: 7      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
LVR010074A08LVR01_0074_A08.bBP441546 
LVR010078D03LVR01_0078_D03.bBP443891 
LVRM10006G05LVRM1_0006_G05.bBP140429 
LVRM10022C09LVRM1_0022_C09.bBP138743 AK232765
LVRM10129C07LVRM1_0129_C07.bBP450152 
LVRM10168C09LVRM1_0168_C09.bBW963119 
LVRM10189F02LVRM1_0189_F02.bCJ006220 

  

SNP: 1      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
631A110.500ONAAG/K
G110.500AGG/R


Alignment:      TOP

20110601C-013019 : ...........................................................G
---------+---------+---------+---------+---------+---------+ 1
LVRM1_0022_C09.b : agttgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxG
LVR01_0078_D03.b :
LVR01_0074_A08.b :
LVRM1_0006_G05.b :
LVRM1_0189_F02.b :
LVRM1_0129_C07.b :
LVRM1_0168_C09.b :
20110601C-013019 : TTCCCATGTTACTGGTTACAGAGTGACCACTACTCCTAAAAATGGCTCAGGACCATCAAA
---------+---------+---------+---------+---------+---------+ 61
LVRM1_0022_C09.b : TTCCCATGTTACTGGTTACAGAGTGACCACTACTCCTAAAAATGGCTCAGGACCATCAAA
LVR01_0078_D03.b : gcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVR01_0074_A08.b :
LVRM1_0006_G05.b :
LVRM1_0189_F02.b :
LVRM1_0129_C07.b :
LVRM1_0168_C09.b :
20110601C-013019 : AACGAAAACTGTTGGTCCAGATCAAACAGAAATGACAATAGAAGGCTTGCAGCCCACAGT
---------+---------+---------+---------+---------+---------+ 121
LVRM1_0022_C09.b : AACGAAAACTGTTGGTCCAGATCAAACAGAAATGACAATAGAAGGCTTGCAGCCCACAGT
LVR01_0078_D03.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtttgttggcctactggactg
LVR01_0074_A08.b :
LVRM1_0006_G05.b :
LVRM1_0189_F02.b :
LVRM1_0129_C07.b :
LVRM1_0168_C09.b :
20110601C-013019 : GGAGTATGTGGTTAGTGTCTACGCTCAGAATCAAAACGGAGAGAGTCAGCCTCTGGTTCA
---------+---------+---------+---------+---------+---------+ 181
LVRM1_0022_C09.b : GGAGTATGTGGTTAGTGTCTACGCTCAGAATCAAAACGGAGAGAGTCAGCCTCTGGTTCA
LVR01_0078_D03.b : gactggcgagtcggcccttgttggcctactggAAAACGGAGAGAGTCAGCCTCTGGTTCA
LVR01_0074_A08.b :
LVRM1_0006_G05.b :
LVRM1_0189_F02.b :
LVRM1_0129_C07.b :
LVRM1_0168_C09.b :
20110601C-013019 : GACAGCGGTAACCACCATTCCTGCACCAACCAACCTGAAGTTCACTCAGGTAACACCCAC
---------+---------+---------+---------+---------+---------+ 241
LVRM1_0022_C09.b : GACAGCGGTAACCACCATTCCTGCACCAACCAACCTGAAGTTCACTCAGGTAACACCCAC
LVR01_0078_D03.b : GACAGCAGTAACCACCATTCCTGCGCCAACCAACCTGAAGTTCACTCAGGTAACACCCAC
LVR01_0074_A08.b :
LVRM1_0006_G05.b :
LVRM1_0189_F02.b :
LVRM1_0129_C07.b :
LVRM1_0168_C09.b :
20110601C-013019 : AAGCCTGACTGCCCAGTGGACAGCCCCCAACGTTCAGCTCACTGGGTATCGAGTGCGGGT
---------+---------+---------+---------+---------+---------+ 301
LVRM1_0022_C09.b : AAGCCTGACTGCCCAGTGGACAGCCCCCAACGTTCAGCCCACTGGGTATCGAGTGCGGGT
LVR01_0078_D03.b : AAGCCTGACTGCCCAGTGGACAGCCCCCAACGTTCAGCTCACTGGGTATCGAGTGCGGGT
LVR01_0074_A08.b :
LVRM1_0006_G05.b :
LVRM1_0189_F02.b :
LVRM1_0129_C07.b :
LVRM1_0168_C09.b :
20110601C-013019 : GACCCCCAAGGAGAAGACCGGGCCAATGAAGGAAATCAACCTTGCTCCTGATAGCTCCTC
---------+---------+---------+---------+---------+---------+ 361
LVRM1_0022_C09.b : GACCCCCAAGGAGAAGACCGGGCCAATGAAGGAAATCAACCTTGCTCCTGATAGCTCCTC
LVR01_0078_D03.b : GACCCCCAAGGAGAAGACCGGGCCAATGAAGGAAATCAACCTTGCTCCTGATAGCTCCTC
LVR01_0074_A08.b : ggcxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0006_G05.b :
LVRM1_0189_F02.b :
LVRM1_0129_C07.b :
LVRM1_0168_C09.b :
20110601C-013019 : TGTGGTCGTATCAGGACTCATGGTGGCCACCAAGTATGAAGTGAGCATCTATGCTCTTAA
---------+---------+---------+---------+---------+---------+ 421
LVRM1_0022_C09.b : TGTGGTCGTATCAGGACTCATGGTGGCCACCAAGTATGAAGTGAGCATCTATGCTCTTAA
LVR01_0078_D03.b : TGTGGTCGTATCAGGACTCATGGTGGCCACCAAGTATGAAGTGAGCATCTATGCTCTTAA
LVR01_0074_A08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTAA
LVRM1_0006_G05.b : atxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0189_F02.b :
LVRM1_0129_C07.b :
LVRM1_0168_C09.b :
20110601C-013019 : GGACACTTTGACAAGCAGACCAGCTCAGGGAGTTGTCACGACCCTGGAGAATGTCAGTCC
---------+---------+---------+---------+---------+---------+ 481
LVRM1_0022_C09.b : GGACACTTTGACAAGCAGACCAGCTCAGGGAGTTGTCACGACCCTGGAGAATGTCAGTCC
LVR01_0078_D03.b : GGACACTTTGACAAGCAGACCAGCTCAGGGAGTTGTCACGACCCTGGAGAATGTCAGTCC
LVR01_0074_A08.b : GGACACTTTGACAAGCAGACCAGCTCAGGGAGTTGTCACGACCCTGGAGAATGTCAGTCC
LVRM1_0006_G05.b : xxxxxCTTTGACAAGCAGACCAGCTCAGGGAGTTGTCACGACCCTGGAGAATGTCAGTCC
LVRM1_0189_F02.b :
LVRM1_0129_C07.b :
LVRM1_0168_C09.b :
20110601C-013019 : TCCAAGAAGGGCCCGGGTGACAGATGCTACTGAGACCACCATCACCATTAGCTGGAGGAC
---------+---------+---------+---------+---------+---------+ 541
LVRM1_0022_C09.b : TCCTAGAAGGGCCCGGGTGACAGATGCTACTGAGACCACCATCACCATTAGCTGGAGGAC
LVR01_0078_D03.b : TCCAAGAAGGGCCCGGGTGACAGATGCTACTGAGACCACCATCACCATTAGCTGGAGGAC
LVR01_0074_A08.b : TCCAAGAAGGGCCCGGGTGACAGATGCTACTGAGACCACCATCACCATTAGCTGGAGGAC
LVRM1_0006_G05.b : TCCAAGAAGGGCCCGGGTGACAGATGCTACTGAGACCACCATCACCATTAGCTGGAGGAC
LVRM1_0189_F02.b :
LVRM1_0129_C07.b :
LVRM1_0168_C09.b :
20110601C-013019 : CAAGACTGAGACGATCACCGGCTTCCAAGTTGATGCCGTCCCAGCCAATGGCCAGACTCC
---------+---------+---------+---------+---------+---------+ 601
LVRM1_0022_C09.b : CAAGACTGAGACGATCACCGGCTTCCAAGTTGATGCCGTCCCAGCCAATGGCCAGACTCC
LVR01_0078_D03.b : CAAGACTGAGACGATCACCGGCTTCCAAGTTGATGCCGTCCCAGCCAATGGCCAGACTCC
LVR01_0074_A08.b : CAAGACTGAGACGATCACCGGCTTCCAAGTTGATGCCGTCCCAGCCAATGGCCAGACTCC
LVRM1_0006_G05.b : CAAGACTGAGACGATCACCGGCTTCCAAGTTGATGCCGTCCCAGCCAATGGCCAGACTCC
LVRM1_0189_F02.b :
LVRM1_0129_C07.b :
LVRM1_0168_C09.b :
20110601C-013019 : AATCCAGAGAACCATCAAGCCAGATGTCAGGAGCTACACCATCACAGGTTTACAACCCGG
---------+---------+---------+---------+---------+---------+ 661
LVRM1_0022_C09.b : AATCCAGAGAACCATCATGCCAGATGTCGAGAGCTACACCATCACAGGTTTACAACCCGG
LVR01_0078_D03.b : AATCCAGAGAACCATCAAGCCAGATGTCAAGAGCTACACCATCACAGGTTTACAACCCGG
LVR01_0074_A08.b : AATCCAGAGAACCATCAAGCCAGATGTCAGGAGCTACACCATCACAGGTTTACAACCCGG
LVRM1_0006_G05.b : AATCCAGAGAACCATCAAGCCAGATGTCAGGAGCTACACCATCACAGGTTTACAACCCGG
LVRM1_0189_F02.b :
LVRM1_0129_C07.b :
LVRM1_0168_C09.b :
20110601C-013019 : CACTGACTACAAGATCTACTTGTACACCCTGAATGACAATGCCCGGAGCTCCCCTGTGGT
---------+---------+---------+---------+---------+---------+ 721
LVRM1_0022_C09.b : CACTGACTACNAGATCTACTTGTACACCCTGAATGACAATGCCCGGAGCTCCTCTGTGGT
LVR01_0078_D03.b : CACTGACTACAAGATCTACTTGTACACCCTGAATGACAATGCCCGGAGCTCCCCTGTGGT
LVR01_0074_A08.b : CACTGACTACAAGATCTACTTGTACACCCTGAATGACAATGCCCGGAGCTCCCCTGTGGT
LVRM1_0006_G05.b : CACTGACTACAAGATCTACTTGTACACCCTGAATGACAATGCCCGGAGCTCCCCTGTGGT
LVRM1_0189_F02.b :
LVRM1_0129_C07.b :
LVRM1_0168_C09.b :
20110601C-013019 : CATCGATGCCTCCACTGCCATCGATGCACCATCCAACTTGCGTTTCCTGGCCACCACACC
---------+---------+---------+---------+---------+---------+ 781
LVRM1_0022_C09.b : CATCGATGCCTCCACTGCCATCGATGCACCATCCAACTTGCGTTTCCTGGCaccacaccc
LVR01_0078_D03.b : CATCGATGCCTCCACTGCCATCGATGCACCATCCAACTTGCGTTTCCTGGCCACCACACC
LVR01_0074_A08.b : CATCGATGCCTCCACTGCCATCGATGCACCATCCAACTTGCGTTTCCTGGCCACCACACC
LVRM1_0006_G05.b : CATCGATGCCTCCACTGCCATCGATGCACCATCCAACTTGCGTTTCCTGGCCACCACACC
LVRM1_0189_F02.b :
LVRM1_0129_C07.b :
LVRM1_0168_C09.b :
20110601C-013019 : CAATTCCTTGTTGGTATCATGGCAGCCACCCCGTGCCAAGATTACTGGTTACATCATCAA
---------+---------+---------+---------+---------+---------+ 841
LVRM1_0022_C09.b : cag
LVR01_0078_D03.b : CAATTCCTTGTTGGTATCATGGCAGCCACCCCGTGCCAAGATTACTGGTTACATCATCAA
LVR01_0074_A08.b : CAATTCCTTGTTGGTATCATGGCAGCCACCCCGTGCCAAGATTACTGGTTACATCATCAA
LVRM1_0006_G05.b : CAATTCCTTGTTGGTATCATGGCAGCCACCCCGTGCCAAGATTACTGGTTACATCATCAA
LVRM1_0189_F02.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTACATCATCAA
LVRM1_0129_C07.b : tagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0168_C09.b :
20110601C-013019 : GTATGAGAAGCCTGGGTCCCCTCCCAGAGAAGTGGTCCCTCGGCCCCGCCCTGGTGTCAC
---------+---------+---------+---------+---------+---------+ 901
LVRM1_0022_C09.b :
LVR01_0078_D03.b : GTATGAGAAGCCTGGGTCTCCTCCCAGAGAAGTGGTCCCTCGGCCCCGCCCTGGTGTCAC
LVR01_0074_A08.b : GTATGAGAAGCCTGGGTCCCCTCCCAGGGAAGTGGTCCCTCGGCCCCGCCCTGGTGTCAC
LVRM1_0006_G05.b : GTATGAGAAGCCTGGGTCCCCTCCCAGAGAAGTGGTCCCTCGGCCCCGCCCTGGTGTCAC
LVRM1_0189_F02.b : GTATGAGAAGCCTGGGTCCCCTCCCAGAGAAGTGGTCCCTCGGCCCCGCCCTGGTGTCAC
LVRM1_0129_C07.b : xxxxGAGAAGCCTGGGTCCCCTCCCAGAGAAGTGGTCCCTCGGCCCCGCCCTGGTGTCAC
LVRM1_0168_C09.b :
20110601C-013019 : AGAAGCTACTATTACTGGTCTGGAACCAGCAACCGAGTACACAATCCAGGTCATTGCCCT
---------+---------+---------+---------+---------+---------+ 961
LVRM1_0022_C09.b :
LVR01_0078_D03.b : AGAAGCTACTATTACTGGTCTGGAACCAGCAACCGAGTACACAATCCAGGTCATTGCCCT
LVR01_0074_A08.b : AGAAGCTACTATTACTGGTCTGGAACCAGCAACCGAGTACACAATCCAGGTCATTGCCCT
LVRM1_0006_G05.b : AGAAGCTACTATTACTGGTCTGGAACCAGCAACCGAGTACACAATCCAGGTCATTGCCCT
LVRM1_0189_F02.b : AGAAGCTACTATTACTGGTCTGGAACCAGCAACCGAGTACACAATCCAGGTCATTGCCCT
LVRM1_0129_C07.b : AGAAGCTACTATTACTGGTCTGGAACCAGCAACCGAGTACACAATCCAGGTCATTGCCCT
LVRM1_0168_C09.b :
20110601C-013019 : CAAGAACAATCAGAAGAGTGAGCCTCTGATCGGGAGGAAAAGGACAGGACAAGAAGCTCT
---------+---------+---------+---------+---------+---------+ 1021
LVRM1_0022_C09.b :
LVR01_0078_D03.b : CAAGAACAATCAGAAGAGTGAGCCTCTGATCGGGAGGAAAAGGACAGGACAAGAGGCTCT
LVR01_0074_A08.b : CAAGAACAATCAGAAGAGTGAGCCTCTGATCGGGAGGAAAAGGACAGGACAAGAAGCTCT
LVRM1_0006_G05.b : CAAGAACAATCAGAAGAGTGAGCCTCTGATCGGGAGGAAAAGGACAGGACAAGAAGCTCT
LVRM1_0189_F02.b : CAAGAACAATCAGAAGAGTGAGCCTCTGATCGGGAGGAAAAGGACAGGACAAGAAGCTCT
LVRM1_0129_C07.b : CAAGAACAATCAGAAGAGTGAGCCTCTGATCGGGAGGAAAAGGACAGGACAAGAAGCTCT
LVRM1_0168_C09.b :
20110601C-013019 : CTCTCAGACAACCATCTCATGGACCCCATTCCAGGAAAGCTCTGAATATATCATTTCATG
---------+---------+---------+---------+---------+---------+ 1081
LVRM1_0022_C09.b :
LVR01_0078_D03.b : CTCTCAGACAAC*ATCTCATGGACCC*ATTTCAGGAAAGCTCTGAATATATCATTTCATG
LVR01_0074_A08.b : CTCTCAGACAACCATCTCATGGACCCCATTCCAGGAAAGCTCTGAATATATCATTTCATG
LVRM1_0006_G05.b : CTCTCAGACAACCATCTCATGGACCCCATTCCAGGAAAGCTCTGAATATATCATTTCATG
LVRM1_0189_F02.b : CTCTCAGACAACCATCTCATGGACCCCATTCCAGGAAAGCTCTGAATATATCATTTCATG
LVRM1_0129_C07.b : CTCTCAGACAACCATCTCATGGACCCCATTCCAGGAAAGCTCTGAATATATCATTTCATG
LVRM1_0168_C09.b :
20110601C-013019 : TCATCCCGTGGGCATTGATGAAGAACCCTTGCAGTTCCGAGTTCCTGGAACTTCTGCTAG
---------+---------+---------+---------+---------+---------+ 1141
LVRM1_0022_C09.b :
LVR01_0078_D03.b : TCATCCCGTGGGCAT
LVR01_0074_A08.b : TCATCCCGTGGGCATTGATGAAGAACCCTTGCAGTTCCGAGTTCCTGGAACTTCTGCTAG
LVRM1_0006_G05.b : TCATCCCGTGGGCATTGATGAAGAACCCTTGCAGTTCCGAGTTCCTGGGACTTCTGCTAG
LVRM1_0189_F02.b : TCATCCCGTGGGCATTGATGAAGAACCCTTGCAGTTCCGAGTTCCTGGAACTTCTGCTAG
LVRM1_0129_C07.b : TCATCCCGTGGGCATTGATGAAGAACCCTTGCAGTTCCGAGTTCCTGGAACTTCTGCTAG
LVRM1_0168_C09.b :
20110601C-013019 : TGCCACCTTGACGGGTCTCACCAGAGGTGCCACCTACAACATCATAGTGGAGGCACTAAA
---------+---------+---------+---------+---------+---------+ 1201
LVRM1_0022_C09.b :
LVR01_0078_D03.b :
LVR01_0074_A08.b : TGCCACCTTGACGGGTCTCACCAGAGGTGCCACCTACAACATCATAGTGGAGGCACTAAA
LVRM1_0006_G05.b : TGCCACCTTGACGGGTCCCACCAGAGGTGCCACCTACAACATCATAGTGGAGGCACTAAN
LVRM1_0189_F02.b : TGCCACCTTGACGGGTCTCACCAGAGGTGCCACCTACAACATCATAGTGGAGGCACTAAA
LVRM1_0129_C07.b : TGCCACCTTGACGGGGCTTAACAGAGGTGCCGCCTACAACATCATAGTGGAGGaaatnac
LVRM1_0168_C09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-013019 : AGACCAGAAGAGGCACAAGATTCGGGAGGAGGTGGTTACTGTGGGCAATTCTGTTGACCA
---------+---------+---------+---------+---------+---------+ 1261
LVRM1_0022_C09.b :
LVR01_0078_D03.b :
LVR01_0074_A08.b : AGACCAGAAGAGGCACAAGATTCGGGAGGAGGTGGTTACTGTGGGCAATTCTGTTTGACC
LVRM1_0006_G05.b : AGACCAGAAGAAGCACAAGATTCGGGAGGAG
LVRM1_0189_F02.b : AGACCAGAAGAGGCACAAGATTCGGGAGGAGGTGGTTACCGTGGGCAATTCTGTTGACCA
LVRM1_0129_C07.b : agaccataagaagcaccagaatcaggaagagggtgttgtagatgccgcaattttgtttga
LVRM1_0168_C09.b : xxxxxxxxxxxxxxxxggGATTCGGGAGGAGGTGGTTACTGTGGGCAATTCTGTTGACCA
20110601C-013019 : AGGCCTAAGCCAACCCACGGATGACTCGTGCTTCGACCCCTACACGGTTTCCCATTATGC
---------+---------+---------+---------+---------+---------+ 1321
LVRM1_0022_C09.b :
LVR01_0078_D03.b :
LVR01_0074_A08.b : AGGCCTAAGCCAACCCACGGATGACTCGTGCTTCGACCCCTACACGGTTTCCCATTATGC
LVRM1_0006_G05.b :
LVRM1_0189_F02.b : AGGCCTAAGCCAACCCACGGATGACTCGTGCTTCGACCCCTACACGGTTTCCCATTATGC
LVRM1_0129_C07.b : ccagggctcatttcaacctacgagaggattggcgcttctgccccatgacgcagaccccaa
LVRM1_0168_C09.b : AGGCCTAAGCCAACCCACGGATGACTCGTGCTTCGACCCCTACACGGTTTCCCATTATGC
20110601C-013019 : CATCGGAGAAGAGTGGGAGCGATTATCTGAATCTGGCTTTAAGCTCTCGTGCCAGTGCTT
---------+---------+---------+---------+---------+---------+ 1381
LVRM1_0022_C09.b :
LVR01_0078_D03.b :
LVR01_0074_A08.b : CATCGGAAAAGAGTGGGAACGATTATCTGAATCTGGgctttaagctctcatgcccgtggc
LVRM1_0006_G05.b :
LVRM1_0189_F02.b : CATCGGAGAAGAGTGGGAGCGATTATCTGAATCTGGCTTTAAGCTCTCGTGCCCTTGCTT
LVRM1_0129_C07.b : atcttgttatcgacataatacttacggacctcttatcctgtatctggcccccctgttctt
LVRM1_0168_C09.b : CATCGGAGAAGAGTGGGAGCGATTATCTGAATCTGGCTTTAAGCTCTCGTGCCAGTGCTT
20110601C-013019 : AGGCTTTGGCAGTGGTCATTTCAGATGTGATTCATCTAAATGGTGCCATGACAATGGTGT
---------+---------+---------+---------+---------+---------+ 1441
LVRM1_0022_C09.b :
LVR01_0078_D03.b :
LVR01_0074_A08.b : ttaggctttgggagtgggtcattttagaatgta
LVRM1_0006_G05.b :
LVRM1_0189_F02.b : AGGCTTTGGatagcgggcacttcacgatgtgatttctctaagcggtggcgtgaccaaggc
LVRM1_0129_C07.b : cgggaccccccgctatagcttattatatgcgagcatttttagaggattattctccctcga
LVRM1_0168_C09.b : AGGCTTTGGCAGTGGTCATTTCAGATGTGATTCATCTAAATGGTGCCATGACAATGGTGT
20110601C-013019 : GAATTACAAGATTGGAGAGAAGTGGGATCTTCAGGGAGAGAATGGCCAGATGATGATCTA
---------+---------+---------+---------+---------+---------+ 1501
LVRM1_0022_C09.b :
LVR01_0078_D03.b :
LVR01_0074_A08.b :
LVRM1_0006_G05.b :
LVRM1_0189_F02.b : gggtcttgggagactgctagaaatggcgctcgtcccggaacgacagcgcgacatagcctt
LVRM1_0129_C07.b : ccttcgctgtcacggtgtttatccttaanctatccgcagtcggattatcgtacgttccgg
LVRM1_0168_C09.b : GAATTACAAGATTGGAGAGAAGTGGGATCTTCAGGGAGAGAATGGCCAGATGATGATCTA
20110601C-013019 : CGGATGTCTTGGAAATGGACTACGCCAATTCAAGTGTGATGCCCATGAAGTGACGTG...
---------+---------+---------+---------+---------+---------+ 1558
LVRM1_0022_C09.b :
LVR01_0078_D03.b :
LVR01_0074_A08.b :
LVRM1_0006_G05.b :
LVRM1_0189_F02.b : gtccgctgctcagagcgaacgagactggcgagtggtcccgcctatgaggcgccgcatg
LVRM1_0129_C07.b : ctatcgcataaaaacatattgttgtttccctagcgatagctaaaaccgcacgaattaaat
LVRM1_0168_C09.b : CGGATGTCTTGGAAATGGACTACGCCAATTCAAGTGTGATGCCCATGAAGTGACGTGatt
20110601C-013019 : ............................................................
---------+---------+---------+---------+---------+---------+ 1558
LVRM1_0022_C09.b :
LVR01_0078_D03.b :
LVR01_0074_A08.b :
LVRM1_0006_G05.b :
LVRM1_0189_F02.b :
LVRM1_0129_C07.b : taaaaagcaagcacatatactagtaggggtgaaccacaagtaccccaccacatgtatgcg
LVRM1_0168_C09.b : gtgatgatggtgacgaatccgatagtaatagaaccgtgaaaagaaagaatatctgggaga
20110601C-013019 : ............................................................
---------+---------+---------+---------+---------+---------+ 1558
LVRM1_0022_C09.b :
LVR01_0078_D03.b :
LVR01_0074_A08.b :
LVRM1_0006_G05.b :
LVRM1_0189_F02.b :
LVRM1_0129_C07.b : taaatctatt
LVRM1_0168_C09.b : aatccagccacgtggcgtatgattgataaaaccgtaccagtcacaggcatatttcccgaa
20110601C-013019 : ............................................................
---------+---------+---------+---------+---------+---------+ 1558
LVRM1_0022_C09.b :
LVR01_0078_D03.b :
LVR01_0074_A08.b :
LVRM1_0006_G05.b :
LVRM1_0189_F02.b :
LVRM1_0129_C07.b :
LVRM1_0168_C09.b : cggtaccaaaaccgagcgcgatagcaagcgtgcaccgccacgctatgatatgatggcgtc
20110601C-013019 : ............................................................
---------+---------+---------+---------+---------+---------+ 1558
LVRM1_0022_C09.b :
LVR01_0078_D03.b :
LVR01_0074_A08.b :
LVRM1_0006_G05.b :
LVRM1_0189_F02.b :
LVRM1_0129_C07.b :
LVRM1_0168_C09.b : tcataatatactaaactgcgaaacgaacgtcggcgtaactattatgagaaccatgctgtt
20110601C-013019 : ............................................................
---------+---------+---------+---------+---------+---------+ 1558
LVRM1_0022_C09.b :
LVR01_0078_D03.b :
LVR01_0074_A08.b :
LVRM1_0006_G05.b :
LVRM1_0189_F02.b :
LVRM1_0129_C07.b :
LVRM1_0168_C09.b : tgcctgataggcccctataccgcggaacttaaggaagataagtgcggcataggataactt
20110601C-013019 : ............................................................
---------+---------+---------+---------+---------+---------+ 1558
LVRM1_0022_C09.b :
LVR01_0078_D03.b :
LVR01_0074_A08.b :
LVRM1_0006_G05.b :
LVRM1_0189_F02.b :
LVRM1_0129_C07.b :
LVRM1_0168_C09.b : aagcatagcgtgaagagcgcaagaatagtaacgtagcatgatgtagttacgggtgaatac
20110601C-013019 : ............................................................
---------+---------+---------+---------+---------+---------+ 1558
LVRM1_0022_C09.b :
LVR01_0078_D03.b :
LVR01_0074_A08.b :
LVRM1_0006_G05.b :
LVRM1_0189_F02.b :
LVRM1_0129_C07.b :
LVRM1_0168_C09.b : aatatagcgcgatattcacgtccctgaagatccctactcacaataacgctggcaatagct
20110601C-013019 : ............................................................
---------+---------+---------+---------+---------+---------+ 1558
LVRM1_0022_C09.b :
LVR01_0078_D03.b :
LVR01_0074_A08.b :
LVRM1_0006_G05.b :
LVRM1_0189_F02.b :
LVRM1_0129_C07.b :
LVRM1_0168_C09.b : atatagcatgtatccccactatggctatcgctaaggatcggatacaagagaggcaggcca
20110601C-013019 : ............................................................
---------+---------+---------+---------+---------+---------+ 1558
LVRM1_0022_C09.b :
LVR01_0078_D03.b :
LVR01_0074_A08.b :
LVRM1_0006_G05.b :
LVRM1_0189_F02.b :
LVRM1_0129_C07.b :
LVRM1_0168_C09.b : caaa