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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-013829

Length: 945

Sequence [FASTA format sequence]
GAGATGAAGT TGGTCTTTTT CAAAGCCAAC CGCAAGGCTC TCTTGTCCCC CGAACGTGGG
ACAGCAGAGG GACCCTGGGC TGGAGAGCTG GGCAGAGCCT CCGAGGACAA TGAAGGGGCT
CACGTGCTTT CTCCTCTGCT TTCTTCTTTC GGAAGCGCAG GGCTTCGAAA TCCCCACCAA
TGGACTTTCA GAATTTGCAG AATATGGAGA TCTTGCGGAA CTGGCCCTGG GCAAATTTCA
CGTTGTGCCA GGAAACCGGA GGTCTCAGAG AAGTGCTTCT GGAGAATCTG GAGAAATGAT
GGAAGGTGTG GATCAAGTCA CTCTTTACAG CTATAAAGTT CAGTCTACTA TTACGTCTCG
AATGGCCAAC ACCGTCATCC AGACCAAAGT GGTGAACCAC TCCCCGGAGC CTCAGGATGT
TGTGTTTGAT ATTCACATCC CCAAAGGAGC CTTCATCTCC AACTTCTCCA TGACTGTGGA
CGGCACCAAG TTTACCAGTT CCATTAAGGA GAAAACTGTG GGCCGCGCCC TCTACTGGCA
GGCGAGAGCA AAAGGCAAAA CAGCTGGACT GGTGAGGAGC CGAGCTCTCG ATATGGAGAA
CTTCAAAACC GAAGTGAACA TCGCCCCTGG AGCCAAGGTG CAGTTTGAAC TTCATTACCA
GGAAGTGAAG TGGAGGAACC TGGGGTCCTA TGAGCACAGG ATCCACCTGC AGCCGGGACG
ACTGGCCAAG CACCTGGAGG TAGATGTGCA GATTATTGAA CCTCAGGGAT TAAGATTTCT
CCATGTTCTG GACACATTCG ACGGGCATTT CGATGGAGTT CCAGTCGTCG TTAAAGGACA
GCAGAAGGCA CACGTGGCCT TCAAGCCCAC AGTGGCACAG CAGAGAAAAT GCCCCAGCTG
CTCTGAGACG GCCGTGGACG GAAAGCTGGT GGTGATGTAT GATGT


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinITIH2inter-alpha-trypsin inhibitor heavy chain H2 [Homo sapiens]. 457e-129O
Contig/Assembly ProteinITIH4inter-alpha-trypsin inhibitor heavy chain H4 isoform 2 precursor [Homo sapiens]. 1823e-46O
Contig/Assembly ProteinITIH4inter-alpha-trypsin inhibitor heavy chain H4 isoform 1 precursor [Homo sapiens]. 1823e-46O
Contig/Assembly ProteinITIH3inter-alpha-trypsin inhibitor heavy chain H3 preproprotein [Homo sapiens]. 1755e-44O
Contig/Assembly ProteinITIH1inter-alpha-trypsin inhibitor heavy chain H1 isoform a [Homo sapiens]. 1623e-40O
Contig/Assembly ProteinITIH5Linter-alpha-trypsin inhibitor heavy chain H5-like protein precursor [Homo sapiens]. 1202e-27O
Contig/Assembly ProteinITIH5inter-alpha-trypsin inhibitor heavy chain H5 isoform 1 precursor [Homo sapiens]. 98.21e-20O
Contig/Assembly ProteinITIH5inter-alpha-trypsin inhibitor heavy chain H5 isoform 3 precursor [Homo sapiens]. 98.21e-20O
Contig/Assembly ProteinITIH1inter-alpha-trypsin inhibitor heavy chain H1 isoform b [Homo sapiens]. 872e-17O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinItih2inter-alpha-trypsin inhibitor heavy chain H2 [Mus musculus]. 417e-117O
Contig/Assembly ProteinItih3inter-alpha-trypsin inhibitor heavy chain H3 precursor [Mus musculus]. 1794e-45O
Contig/Assembly ProteinItih4inter alpha-trypsin inhibitor, heavy chain 4 isoform 2 [Mus musculus]. 1693e-42O
Contig/Assembly ProteinItih4inter alpha-trypsin inhibitor, heavy chain 4 isoform 1 [Mus musculus]. 1693e-42O
Contig/Assembly ProteinItih1inter-alpha-trypsin inhibitor heavy chain H1 precursor [Mus musculus]. 1585e-39O
Contig/Assembly ProteinItih5l-psPREDICTED: LOW QUALITY PROTEIN: inter-alpha (globulin) inhibitor H5-like, pseudogene [Mus musculus]. 1286e-30O
Contig/Assembly ProteinItih5l-psPREDICTED: LOW QUALITY PROTEIN: inter-alpha (globulin) inhibitor H5-like, pseudogene [Mus musculus]. 1286e-30O
Contig/Assembly ProteinItih5inter-alpha-trypsin inhibitor heavy chain H5 precursor [Mus musculus]. 96.33e-20O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC478011PREDICTED: similar to inter-alpha globulin inhibitor H2 polypeptide [Canis familiaris]. 469e-132O
Contig/Assembly ProteinLOC607088PREDICTED: similar to inter-alpha (globulin) inhibitor H4 (plasma Kallikrein-sensitive glycoprotein) [Canis familiaris]. 1641e-40O
Contig/Assembly ProteinLOC476590PREDICTED: similar to Inter-alpha-trypsin inhibitor heavy chain H1 precursor (ITI heavy chain H1) (Inter-alpha-inhibitor heavy chain 1) (Inter-alpha-trypsin inhibitor complex component III) (Serum-derived hyaluronan-associated protein) (SHAP) [Canis familiaris]. 1571e-38O
Contig/Assembly ProteinLOC491368PREDICTED: similar to inter-alpha (globulin) inhibitor H3 [Canis familiaris]. 1462e-35O
Contig/Assembly ProteinLOC484730PREDICTED: similar to inter-alpha (globulin) inhibitor H3 [Canis familiaris]. 1356e-32O
Contig/Assembly ProteinLOC487136PREDICTED: similar to inter-alpha trypsin inhibitor heavy chain precursor 5 isoform 1 [Canis familiaris]. 96.34e-20O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinITIH2inter-alpha-trypsin inhibitor heavy chain H2 [Bos taurus]. 483e-136O
Contig/Assembly ProteinITIH3inter-alpha-trypsin inhibitor heavy chain H3 precursor [Bos taurus]. 1818e-46O
Contig/Assembly ProteinITIH4inter-alpha-trypsin inhibitor heavy chain H4 precursor [Bos taurus]. 1785e-45O
Contig/Assembly ProteinITIH1inter-alpha-trypsin inhibitor heavy chain H1 precursor [Bos taurus]. 1593e-39O
Contig/Assembly ProteinITIH5inter-alpha-trypsin inhibitor heavy chain H5 precursor [Bos taurus]. 89.44e-18O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinITIH2inter-alpha-trypsin inhibitor heavy chain H2 precursor [Sus scrofa]. 526e-150O
Contig/Assembly ProteinITIH4inter-alpha-trypsin inhibitor heavy chain H4 [Sus scrofa]. 1783e-45O
Contig/Assembly ProteinITIH3inter-alpha-trypsin inhibitor heavy chain H3 [Sus scrofa]. 1762e-44O
Contig/Assembly ProteinITIH1inter-alpha-trypsin inhibitor heavy chain H1 precursor [Sus scrofa]. 1592e-39O
Contig/Assembly ProteinLOC100515404PREDICTED: inter-alpha-trypsin inhibitor heavy chain H5-like [Sus scrofa]. 97.11e-20O


Assembly Members: 11      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
LVR010009E03LVR01_0009_E03.bBP444725 
LVR010063H11LVR01_0063_H11.bBP448042 
LVR010093C10LVR01_0093_C10.bBW962761 
LVRM10009E11LVRM1_0009_E11.bBP139741 
LVRM10013C10LVRM1_0013_C10.bBP450330 
LVRM10015B11LVRM1_0015_B11.bBP449605 
LVRM10026B11LVRM1_0026_B11.bBP138370 
LVRM10035H03LVRM1_0035_H03.bCJ001456 
LVRM10079C12LVRM1_0079_C12.bBP138897 
LVRM10125H12LVRM1_0125_H12.bBP454613 
LVRM10186G06LVRM1_0186_G06.bCJ005984 

  

SNPs: 3      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
406A200.222BSCCA/P
G070.778CCG/P
436C080.800BNCAC/H
G200.200CAG/Q
569C170.800WSCTG/L
T200.200TTG/L


Alignment:      TOP

20110601C-013829 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
LVRM1_0009_E11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVR01_0009_E03.b : cattatxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0015_B11.b : ttgtcxxxxxxxx
LVRM1_0026_B11.b : agttgacxxxxxxxxxxxxxxx
LVRM1_0125_H12.b : nagtttgtcxxxxxxxxxxxxxxxxxx
LVRM1_0186_G06.b : xx
LVRM1_0013_C10.b : ttgtcxxxxxxxxxxx
LVR01_0093_C10.b : cxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0079_C12.b :
LVRM1_0035_H03.b :
LVR01_0063_H11.b :
20110601C-013829 : ......................GAGATGAAGTTGGTCTTTTTCAAAGCCAACCGCAAGGC
---------+---------+---------+---------+---------+---------+ 38
LVRM1_0009_E11.b : xxxxxxxxxxxxxxxxxxxxxxGAGATGAAGTTGGTCTTTTTCAAAGCCAACCGCAAGGC
LVR01_0009_E03.b : xxxxxxxxxxxxxxxxxxxxxxxxGATGAAGTTGGTCTTTTTCAAAGCCAACCACAAGGC
LVRM1_0015_B11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtggaaAAGCCAACCGCAAGGC
LVRM1_0026_B11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxttttttcAAGCCAACCACAAGGC
LVRM1_0125_H12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCCAACCGCAAGGC
LVRM1_0186_G06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCCAACCGCAAGGC
LVRM1_0013_C10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCCAACCACAAGGC
LVR01_0093_C10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCCAACCACAAGGC
LVRM1_0079_C12.b : agttgacxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0035_H03.b : gagttgtcxxxxxxxxxxxxxxxxxxxxxxxxx
LVR01_0063_H11.b : gcxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-013829 : TCTCTTGTCCCCCGAACGTGGGACAGCAGAGGGACCCTGGGCTGGAGAGCTGGGCAGAGC
---------+---------+---------+---------+---------+---------+ 98
LVRM1_0009_E11.b : TCTCTTGTCCCCCGAACGTGGGACAGCAGAGGGACCCTGGGCTGGAGAGCTGGGCAGAGC
LVR01_0009_E03.b : TCTCTTGTCCCCCGAACGTGGGACAGCAGAGGAACCCTGGGCTGGAGAGCTGGGCAGAGC
LVRM1_0015_B11.b : TCTCTTGTCCCCCGAACGTGGGACAGCAGAGGGACCCTGGGCTGGAGAGCTGGGCAGAGC
LVRM1_0026_B11.b : TCTCTTGTCCCCCGAACGTGGGACAGCAGAGGGACCCTGGGCTGGAGAGCTGGGCAGAGC
LVRM1_0125_H12.b : TCTCTTGTCCCCCGAACGTGGGACAGCAGAGGGACCCTGGGCTGGAGAGCTGGGCAGAGC
LVRM1_0186_G06.b : TCTCTTGTCCCCCGAACGTGGGACAGCAGAGGGACCCTGGGCTGGAGAGCTGGGCAGAGC
LVRM1_0013_C10.b : TCTCTTGTCCCCCGAACGTGGGACAGCAGAGGGACCCTGGGCTGGAGAGCTGGGCAGAGC
LVR01_0093_C10.b : TCTCTTGTCCCCCGAACGTGGGACAGCAGAGGGACCCTGGGCTGGAGAGCTGGGCAGAGC
LVRM1_0079_C12.b : xxxxxxxxxxxxxxxxxxxxxxACAGCAGAGGGACCCTGGGCTGGAGAGCTGGGCAGAGC
LVRM1_0035_H03.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxGAGGGACCCTGGGCTGGAGAGCTGGGCAGAGC
LVR01_0063_H11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAGAGC
20110601C-013829 : CTCCGAGGACAATGAAGGGGCTCACGTGCTTTCTCCTCTGCTTTCTTCTTTCGGAAGCGC
---------+---------+---------+---------+---------+---------+ 158
LVRM1_0009_E11.b : CTCCGAGGACAATGAAGGGGCTCACGTGCTTTCTCCTCTGCTTTCTTCTTTCGGAAGCGC
LVR01_0009_E03.b : CTCCGAGGACAATGAAGGGGCTCACGTGCTTTCTCCTCTGCTTTCTTCTTTCGGAAGCGC
LVRM1_0015_B11.b : CTCCGAGGACAATGAAGGGGCTCACGTGCTTTCTCCTCTGCTTTCTTCTTTCGGAAGCGC
LVRM1_0026_B11.b : CTCCGAGGACAATGAAGGGGCTCACGTGCTTTCTCCTCTGCTTTCTTCTTTCGGAAGCGC
LVRM1_0125_H12.b : CTCCGAGGACAATGAAGGGGCTCACGTGCTTTCTCCTCTGCTTTCTTCTTTCGGAAGCGC
LVRM1_0186_G06.b : CTCCGAGGACAATGAAGGGGCTCACGTGCTTTCTCCTCTGCTTTCTTCTTTCGGAAGCGC
LVRM1_0013_C10.b : CTCCGAGGACAATGAAGGGGCTCACGTGCTTTCTCCTCTGCTTTCTTCTTTCGGAAGCGC
LVR01_0093_C10.b : CTCCGAGGACAATGAAGGGGCTCACGTGCTTTCTCCTCTGCTTTCTTCTTTCGGAAGCGC
LVRM1_0079_C12.b : CTCCGAGGACAATGAAGGGGCTCACGTGCTTTCTCCTCTGCTTTCTTCTTTCGGAAGCGC
LVRM1_0035_H03.b : CTCCGAGGACAATGAAGGGGCTCACGTGCTTTCTCCTCTGCTTTCTTCTTTCGGAAGCGC
LVR01_0063_H11.b : CTCCGAGGACAATGAAGGGGCTCACGTGCTTTCTCCTCTGCTTTCTTCTTTCGGAAGCGC
20110601C-013829 : AGGGCTTCGAAATCCCCACCAATGGACTTTCAGAATTTGCAGAATATGGAGATCTTGCGG
---------+---------+---------+---------+---------+---------+ 218
LVRM1_0009_E11.b : AGGGCTTCGAAATCCCCACCAATGGACTTTCAGAATTTGCAGAATATGGAGATCTTGCGG
LVR01_0009_E03.b : AGGGCTTCGAAATCCCCACCAATGGACTTTCAGAATTTGCAGAATATGGAGATCTTGCGG
LVRM1_0015_B11.b : AGGGCTTCGAAATCCCCACCAATGGACTTTCAGAATTTGCAGAATATGGAGATCTTGCGG
LVRM1_0026_B11.b : AGGGCTTCGAAATCCCCACCAATGGACTTTCAGAATTTGCAGAATATGGAGATCTTGCGG
LVRM1_0125_H12.b : AGGGCTTCGAAATCCCCACCAATGGACTTTCAGAATTTGCAGAATATGGAGATCTTGCGG
LVRM1_0186_G06.b : AGGGCTTCGAAATCCCCACCAATGGACTTTCAGAATTTGCAGAATATGGAGATCTTGCGG
LVRM1_0013_C10.b : AGGGCTTCGAAATCCCCACCAATGGACTTTCAGAATTTGCAGAATATGGAGATCTTGCGG
LVR01_0093_C10.b : AGGGCTTCGAAATCCCCACCAATGGACTCTCAGAATTTGCAGAATATGGAGATCTTGCGG
LVRM1_0079_C12.b : AGGGCTTCGAAATCCCCACCAATGGACTTTCAGAATTTGCAGAATATGGAGATCTTGCGG
LVRM1_0035_H03.b : AGGGCTTCGAAATCCCCACCAATGGACTTTCAGAATTTGCAGAATATGGAGATCTTGCGG
LVR01_0063_H11.b : AGGGCTTCGAAATCCCCACCAATGGACTTTCAGAATTTGCAGAATATGGAGATCTTGCGG
20110601C-013829 : AACTGGCCCTGGGCAAATTTCACGTTGTGCCAGGAAACCGGAGGTCTCAGAGAAGTGCTT
---------+---------+---------+---------+---------+---------+ 278
LVRM1_0009_E11.b : AACTGGCCCTGGGCAAATTTCACGTTGTGCCAGGAAACCGGAGGTCTCAGAGAAGTGCTT
LVR01_0009_E03.b : AACTGGCCCTGGGCAAATTTCACGTTGTGCCAGGAAACCGGAGGTCTCAGAGAAGTGCTT
LVRM1_0015_B11.b : AACTGGCCCTGGGCAAATTCCACGTTGTGCCAGGAAACCGGAGGTCTCAGAGAAGTGCTT
LVRM1_0026_B11.b : AACTGGCCCCGGGCAAATTTCACGTTGTGCCAGGAAACCGGAGGTCTCAGAGAAGTGCTT
LVRM1_0125_H12.b : AACTGGCCCTGGGCAAATTTCACGTTGTGCCAGGAAACCGGAGGTCTCAGAGAAGTGCTT
LVRM1_0186_G06.b : AACTGGCCCTGGGCAAATTTCACGTTGTGCCAGGAAACCGGAGGTCTCAGAGAAGTGCTT
LVRM1_0013_C10.b : AACTGGCCCTGGGCAAATTTCACGTTGTGCCAGGAAACCGGAGGTCTCAGAGAAGTGCTT
LVR01_0093_C10.b : AACTGGCCCTGGGCAAATTTCACGTTGTGCCAGGAAACCGGAGGTCTCAGAGAAGTGCTT
LVRM1_0079_C12.b : AACTGGCCCTGGGCAAATTTCACGTTGTGCCAGGAAACCGGAGGTCTCAGAGAAGTGCTT
LVRM1_0035_H03.b : AACTGGCCCTGGGCAAATTTCACGTTGTGCCAGGAAACCGGAGGTCTCAGAGAAGTGCTT
LVR01_0063_H11.b : AACTGGCCCTGGGCAAATTTCACGTTGTGCCAGGAAACCGGAGGTCTCAGAGAAGTGCTT
20110601C-013829 : CTGGAGAATCTGGAGAAATGATGGAAGGTGTGGATCAAGTCACTCTTTACAGCTATAAAG
---------+---------+---------+---------+---------+---------+ 338
LVRM1_0009_E11.b : CTGGAGAATCTGGAGAAATGATGGAAGGTGTGGATCAAGTCACTCTTTACAGCTATAAAG
LVR01_0009_E03.b : CTGGAGAATCTGGAGAAATGATGGAAGGTGTGGATCAAGTCACTCTTTACAGCTATAAAG
LVRM1_0015_B11.b : CTGGAGAATCTGGAGAAATGATGGAAGGTGTGGATCAAGTCACTCTTTACAGCTATAAAG
LVRM1_0026_B11.b : CTGGAGAATCTGGAGAAATGATGGAAGGTGTGGATCAAGTCACTCTTTACAGCTATAAAG
LVRM1_0125_H12.b : CTGGAGAATCTGGAGAAATGATGGAAGGTGTGGATCAAGTCACTCTTTACAGCTATAAAG
LVRM1_0186_G06.b : CTGGAGAATCTGGAGAAATGATGGAAGGTGTGGATCAAGTCACTCTTTACAGCTATAAAG
LVRM1_0013_C10.b : CTGGAGAATCTGGAGAAATGATGGAAGGTGTGGATCAAGTCACTCTTTACAGCTATAAAG
LVR01_0093_C10.b : CTGGAGAATCTGGAGAAATGATGGAAGGTGTGGATCAAGTCACTCTTTACAGCTATAAAG
LVRM1_0079_C12.b : CTGGAGAATCTGGAGAAATGATGGAAGGTGTGGATCAAGTCACTCTTTACAGCTATAAAG
LVRM1_0035_H03.b : CTGGAGAATCTGGAGAAATGATGGAAGGTGTGGATCAAGTCACTCTTTACAGCTATAAAG
LVR01_0063_H11.b : CTGGAGAATCTGGAGAAATGATGGAAGGTGTGGATCAAGTCACTCTTTACAGCTATAAAG
20110601C-013829 : TTCAGTCTACTATTACGTCTCGAATGGCCAACACCGTCATCCAGACCAAAGTGGTGAACC
---------+---------+---------+---------+---------+---------+ 398
LVRM1_0009_E11.b : TTCAGTCTACTATTACGTCTCGAATGGCCAACACCGTCATCCAGACCAAAGTGGTGAACC
LVR01_0009_E03.b : TTCAGTCTACTATTACGTCTCGAATGGCCAACACCGTCATCCAGACCAAAGTGGTGAACC
LVRM1_0015_B11.b : TTCAGTCTACTATTACGTCTCGAATGGCCAACACCGTCATCCAGACCAAAGTGGTGAACC
LVRM1_0026_B11.b : TTCAGTCTACTATTACGTCTCGAATGGCCAACACCGTCATCCAGACCAAAGTGGTGAACC
LVRM1_0125_H12.b : TTCAGTCTACTATTACGTCTCGAATGGCCAACACCGTCATCCAGACCAAAGTGGTGAACC
LVRM1_0186_G06.b : TTCAGTCTACTATTACGTCTCGAATGGCCAACACCGTCATCCAGACCAAAGTGGTGAACC
LVRM1_0013_C10.b : TTCAGTCTACTATTACGTCTCGAATGGCCAACACCGTCATCCAGACCAAAGTGGTGAACC
LVR01_0093_C10.b : TTCAGTCTACTATTACGTCTCGAATGGCCAACACCGTCATCCAGACCAAAGTGGTGAACC
LVRM1_0079_C12.b : TTCAGTCTACTATTACGTCTCGAATGGCCAACACCGTCATCCAGACCAAAGTGGTGAACC
LVRM1_0035_H03.b : TTCAGTCTACTATTACGTCTCGAATGGCCAACACCGTCATCCAGACCAAAGTGGTGAACC
LVR01_0063_H11.b : TTCAGTCTACTATTACGTCTCGAATGGCCAACACCGTCATCCAGACCAAAGTGGTGAACC
20110601C-013829 : ACTCCCCGGAGCCTCAGGATGTTGTGTTTGATATTCACATCCCCAAAGGAGCCTTCATCT
---------+---------+---------+---------+---------+---------+ 458
LVRM1_0009_E11.b : ACTCCCCGGAGCCTCAGGATGTTGTGTTTGATATTCACATCCCCAAAGGAGCCTTCATCT
LVR01_0009_E03.b : ACTCCCCAGAGCCTCAGGATGTTGTGTTTGATATTCAGATCCCCAAAGGAGCCTTCATCT
LVRM1_0015_B11.b : ACTCCCCGGAGCCTCAGGATGTTGTGTTTGATATTCACATCCCCAAAGGAGCCTTCATCT
LVRM1_0026_B11.b : ACTCCCCGGAGCCTCAGGATGTTGTGTTTGATATTCACATCCCCAAAGGAGCCTTCATCT
LVRM1_0125_H12.b : ACTCCCCGGAGCCTCAGGATGTTGTGTTTGATATTCACATCCCCAAAGGAGCCTTCATCT
LVRM1_0186_G06.b : ACTCCCCGGAGCCTCAGGATGTTGTGTTTGATATTCACATCCCCAAAGGAGCCTTCATCT
LVRM1_0013_C10.b : ACTCCCCGGAGCCTCAGGATGTTGTGTTTGATATTCACATCCCCAAAGGAGCCTTCATCT
LVR01_0093_C10.b : ACTCCCCAGAGCCTCAGGATGTTGTGTTTGATATTCAGATCCCCAAAGGAGCCTTCATCT
LVRM1_0079_C12.b : ACTCCCCGGAGCCTCAGGATGTTGTGTTTGATATTCACATCCCCAAAGGAGCCTTCATCT
LVRM1_0035_H03.b : ACTCCCCGGAGCCTCAGGATGTTGTGTTTGATATTCACATCCCCAAAGGAGCCTTCATCT
LVR01_0063_H11.b : ACTCCCCAGAGCCTCAGGATGTTGTGCTTGATATTCAGATCCCCAAAGGAGCCTTCATCT
20110601C-013829 : CCAACTTCTCCATGACTGTGGACGGCACCAAGTTTACCAGTTCCATTAAGGAGAAAACTG
---------+---------+---------+---------+---------+---------+ 518
LVRM1_0009_E11.b : CCAACTTCTCCATGACTGTGGACGGCACCAAGTTTACCAGTTCCATTAAGGAGAAAACTG
LVR01_0009_E03.b : CCAACTTCTCCATGACTGTGGACGGCACCAAGTTTACCAGTTCCATTAAGGAGAAAACTG
LVRM1_0015_B11.b : CCAACTTCTCCATGACTGTGGACGGCACCAAGTTTACCAGTTCCATTAAGGAGAAAACTG
LVRM1_0026_B11.b : CCAACTTCTCCATGACTGTGGACGGCACCAAGTTTACCAGTTCCATTAAGGAGAAAACTG
LVRM1_0125_H12.b : CCAACTTCTCCATGACTGTGGACGGCACCAAGTTTACCAGTTCCATTAAGGAGAAAACTG
LVRM1_0186_G06.b : CCAACTTCTCCATGACTGTGGACGGCACCAAGTTTACCAGTTCCATTAAGGAGAAAACTG
LVRM1_0013_C10.b : CCAACTTCTCCATGACTGTGGACGGCACCAAGTTTACCAGTTCCATTAAGGAGAAAACTG
LVR01_0093_C10.b : CCAACTTCTCCATGACTGTGGACGGCACCAAGTTTACCAGTTCCATTAAGGAGAAAACTG
LVRM1_0079_C12.b : CCNACTTCTCCATGACTGTGGACGGCACCAAGTTTACCAGTTCCATTAAGGAGAAAACTG
LVRM1_0035_H03.b : CCAACTTCTCCATGACTGTGGACGGCACCAAGTTTACCAGTTCCATTAAGGAGAAAACTG
LVR01_0063_H11.b : CCAACTTCTCCATGACTGTGGACGGCACCAAGTTTACCAGTTCCATTAAGGAGAAAACTG
20110601C-013829 : TGGGCCGCGCCCTCTACTGGCAGGCGAGAGCAAAAGGCAAAACAGCTGGACTGGTGAGGA
---------+---------+---------+---------+---------+---------+ 578
LVRM1_0009_E11.b : TGGGCCGCGCCCTCTACTGGCAGGCGAGAGCAAAAGGCAAAACAGCTGGACTGGTGAGGA
LVR01_0009_E03.b : TGGGCCGCGCCCTCTACTGGCAGGCGAGAGCAAAAGGCAAAACAGCTGGATTGGTGAGGA
LVRM1_0015_B11.b : TGGGCCGCGCCCTCTACTGGCAGGCGAGAGCAAAAGGCAAAACAGCTGGACTGGTGAGGA
LVRM1_0026_B11.b : TGGGCCGCGCCCTCTACTGGCAGGCGAGAGCAAAAGGCAAAACAGCTGGACTGGTGAGGA
LVRM1_0125_H12.b : TGGGCCGCGCCCTCTACTGGCAGGCGAGAGCAAAAGGCAAAACAGCTGGACTGGTGAGGA
LVRM1_0186_G06.b : TGGGCCGCGCCCTCTACTGGCAGGCGAGAGCAAAAGGCAAAACAGCTGGACTGGTGAGGA
LVRM1_0013_C10.b : TGGGCCGCGCCCTCTACTGAGAGGCGAGAGCAAAAGGCAAAACAGCTGGACTGGTGAGGA
LVR01_0093_C10.b : TGGGCCGCGCCCTCTACTGGCAGGCGAGAGCAAAAGGCAAAACAGCTGGACTGGTGAGGA
LVRM1_0079_C12.b : TGGGCCGCGCCCTCTACTGGCAGGCGAGAGCAAAAGGCAAAACAGCTGGACTGGTGAGGA
LVRM1_0035_H03.b : TGGGCCGCGCCCTCTACTGGCAGGCGAGAGCAAAAGGCAAAACAGCTGGACTGGTGAGGA
LVR01_0063_H11.b : TGGGCCGCGCCCTCTACTGGCAGGCGAGAGCAAAAGGCAAAACAGCTGGATTGGTGAGGA
20110601C-013829 : GCCGAGCTCTCGATATGGAGAACTTCAAAACCGAAGTGAACATCGCCCCTGGAGCCAAGG
---------+---------+---------+---------+---------+---------+ 638
LVRM1_0009_E11.b : GCCGAGCTCTCGATATGGAGAACTTCATAACCGAAGTGAACATCGCCCCTGGAGCCAAGG
LVR01_0009_E03.b : GCCGAGCTCTCGATATGGAGAACTTCAAAACCGAAGTGAACATCGCCCCTGGAGCCAAGG
LVRM1_0015_B11.b : GCCGAGCTCTCGATATGGAGAACTTCAAAACCGAAGTGAACATCGCCCCTGGAGCCAAGG
LVRM1_0026_B11.b : GCCGAGCTCTCGATATGGAGAACTTCGGAACCGAAGTGAACATCGCCNCTGGAGCCGAGG
LVRM1_0125_H12.b : GCCGAGCTCTCGATATGGAGAACTTCTAAACCGAAGTGAACATCGCCCCTGGAGCCAAGG
LVRM1_0186_G06.b : GCCGAGCTCTCGATATGGAGAACTTCAAAACCGAAGTGAACATCGCCCCTGGAGCCAAGG
LVRM1_0013_C10.b : GCCGAGCTCTCGATATGGAGAACTTCNAAACCGAAGTGAACATCGCCCCTGGAGCCAAGG
LVR01_0093_C10.b : GCCGAGCTCTCGATATGGAGAACTTCAAAACCGAAGTGAACATCGCCCCTGGAGCCAAGG
LVRM1_0079_C12.b : GCCGAGCTCTCGATATGGAGAACTTCAAAACCGAAGTGAACATCGCCCCTGGAGCCNAGG
LVRM1_0035_H03.b : GCCGAGCTCTCGATATGGAGAACTTCAAAACCGAAGTGAACATCGCCCCTGGAGCCAAGG
LVR01_0063_H11.b : GCCGAGCTCTCGATATGGAGAACTTCAAAACCGAAGTGAACATCGCCCCTGGAGCCAAGG
20110601C-013829 : TGCAGTTTGAACTTCATTACCAGGAAGTGAAGTGG*AGGAACCTGGGGTCCTATGAGCAC
---------+---------+---------+---------+---------+---------+ 697
LVRM1_0009_E11.b : TGCAGTTTGAACTTCATTACCAGGAAGTGAAGTGG*AGGA*CCTGGGGTCCTATGAGCAC
LVR01_0009_E03.b : TGCAGTTTGAACTTCATTACCAGGAAGTGAAGTGG*AGGAGCCTGGGGTCCTATGAGCAC
LVRM1_0015_B11.b : TGCAGTTTGAACTTCATTACCAGGAAGTGAAGTGG*AGGAACCTGGGGTCCTATGAGCAC
LVRM1_0026_B11.b : TGCAGTTTGAACTTCATTACCAGNAAGTGAAGTGG*AGGAACCTGGGGTCCTATNAGCAC
LVRM1_0125_H12.b : TGCAGTTTGAACTTCATTACCAGGAAGTGAAGTGG*AGGAACCTGGGGTCCTATGAGCAC
LVRM1_0186_G06.b : TGCAGTTTGAACTTCATTACCAGGAAGTGAAGTGG*AGGAACCTGGGGTCCTATGAGCAC
LVRM1_0013_C10.b : TGCAGTTTGAACTTCATTACCAAGGAGTGGAGTGGGAGGAACCTGGGGTCCTATGAGCAC
LVR01_0093_C10.b : TGCAGTTTGAACTTCATTACCAGGAAGTGAAGTGG*AGGAACCTGGGGTCCTATGAGCAC
LVRM1_0079_C12.b : TGCAGTTTGAACTTCATTACCAGGAAGTGAAGTGG*AGGAACCTGNGGTCCTATGAGCAC
LVRM1_0035_H03.b : TGCAGTTTGAACTTCATTACCAGGAAGTGAAGTGG*AGGAACCTGNGGTCCTATGAGCAC
LVR01_0063_H11.b : TGCAGTTTGAACTTCATTACCAGGAAGTGAAGTGG*AGGAACCTGGGGTCCTATGAGCAC
20110601C-013829 : AGGATCCACCTGCAGCCGGGACGACTGGCCAAGCACCTGGAGGTAGATGTGCAGATTATT
---------+---------+---------+---------+---------+---------+ 757
LVRM1_0009_E11.b : AGGAATCACCTGCAGCCGGGACGAGCTGCCAAGCACCTG*AGGGAGATGTGCATATTATT
LVR01_0009_E03.b : AGGATCCACCTGCAGCCGGGACGACTGGCCAAGCACCTGGAGGTAGATGTGCAGATTATT
LVRM1_0015_B11.b : AGGATCCACCTGCAGCCGGGACGACTGGCCAAGCACCTGGCAGTAAATGTGCAAATTATT
LVRM1_0026_B11.b : AAGATCCACCTGCAGCCNGGACGACTGGCCNAGCACCTGAAGGTATATGTGCAGATTATT
LVRM1_0125_H12.b : AGGATCCACCTGCAGCCGGGACGACTGGCCNAGCcactggaag
LVRM1_0186_G06.b : AGGATCCACCTGCAGCCCGGACGACTGGCCAAGCACCTGGAGGTAGATGTGCAGATTATT
LVRM1_0013_C10.b : AGGATCCACCTGCAGCCGGGACGACTGGCC*AGCACCTGGAGGTAGATGTGCCAATTATT
LVR01_0093_C10.b : AGGATCCACCTGCAGCCGGGACGACTGGCCAAGCACCTGGAGGGTGATGTGCAGATTATT
LVRM1_0079_C12.b : AGGATCCACCTGCAGCCGGGACGACTGGCCCAGCACCTGGAGGTAGATGTGCAGATTATT
LVRM1_0035_H03.b : AGGATCCACCTGCAGCCGGGACGACTGGCCAAGCACCTGGAGGTAGATGTGCAGATTATT
LVR01_0063_H11.b : AGGATCCACCTGCAGCCGGGACGACTGGCCAAGCACCTGGAGGTAGATGTGCAGATTATT
20110601C-013829 : GA*ACCTCAGGGATTAAGA**TTTCTCCATGTTCTGGACACATTCGACGGG*CATTTCGA
---------+---------+---------+---------+---------+---------+ 813
LVRM1_0009_E11.b : GA*ACCTCAGGG
LVR01_0009_E03.b : GA*ACCTCAGGGATTAAGA**TTTCTCCATGTTCTGGACACATTCGACGGGGCATTTCGA
LVRM1_0015_B11.b : GAcctcagggattaagattccccatgttctggacacgtt
LVRM1_0026_B11.b : GC*ACCTCAG
LVRM1_0125_H12.b :
LVRM1_0186_G06.b : GAn
LVRM1_0013_C10.b : GA**CCTCAGGGATTAAGA**TTTCTCCATGGTCTGGAAACATTCGACGa
LVR01_0093_C10.b : GAAACCTCAGGGATTAAGAATTTTCTCCATGTTCTGGACCCATTCCACGGGcatttcaat
LVRM1_0079_C12.b : GA*ACCTCACGGATTAAGA**TTTCTCCATGTTCTGGACACATTCGACGGG*CATTTCGA
LVRM1_0035_H03.b : GA*ACCTCAGGGATTAAGA**TTTCTCCATGTTCTGGACACATTCGACGGGCATn
LVR01_0063_H11.b : GA*ACCTCAGGGATTAAGA**TTTCTCCATGTTCTGGACACATTCGACGGG*CATTTCGA
20110601C-013829 : TGGAGTTCCAGTCGTCGTTAAAGGACAGCAGAAGGCACACGTGG*CCTTCAAG*CCCACA
---------+---------+---------+---------+---------+---------+ 871
LVRM1_0009_E11.b :
LVR01_0009_E03.b : TGGAGTTCCAGTCGTCGTTAAAGGACAGCAGAAGGCACACGTGGGCCTTCAAGCCCCACA
LVRM1_0015_B11.b :
LVRM1_0026_B11.b :
LVRM1_0125_H12.b :
LVRM1_0186_G06.b :
LVRM1_0013_C10.b :
LVR01_0093_C10.b : gggagttcccgttcgtcctttaagggacgccaaaaaggacccctgggccttcaagcccca
LVRM1_0079_C12.b : TGGAGTTCCAGTCGTCGTTAAAGGACAc
LVRM1_0035_H03.b :
LVR01_0063_H11.b : TGGAGTTCCAGTCGTCGTTAAAGGACAGCAGAAGGCACACGTGG*CCTTCAAG*CCCACA
20110601C-013829 : GTGGCACAGCAGAGAAAATGCCCCAGCTGCTCTGAGACGGCCGTGGACGGAAAGCTGGTG
---------+---------+---------+---------+---------+---------+ 931
LVRM1_0009_E11.b :
LVR01_0009_E03.b : GTGGCCCAGCAGAGAAAATGCCCCAGCTGCTCTTAAACGGCCGTGGACGGAAAGCTGGGG
LVRM1_0015_B11.b :
LVRM1_0026_B11.b :
LVRM1_0125_H12.b :
LVRM1_0186_G06.b :
LVRM1_0013_C10.b :
LVR01_0093_C10.b : cattggcccagccaaaaaaaatgccccccagctggctcgaaacaggccccgggaccgtaa
LVRM1_0079_C12.b :
LVRM1_0035_H03.b :
LVR01_0063_H11.b : GTGGCACAGCAGAGAAAATGCCCCAGCTGCTCTGAGACGGCCGTGGACGGAGAGCTGGTG
20110601C-013829 : GTGATGTATGATGT..............................................
---------+---------+---------+---------+---------+---------+ 945
LVRM1_0009_E11.b :
LVR01_0009_E03.b : GTGATGTttgaagtgaacagaaagccaaaagccggcaaactgcagctcttcaagggattt
LVRM1_0015_B11.b :
LVRM1_0026_B11.b :
LVRM1_0125_H12.b :
LVRM1_0186_G06.b :
LVRM1_0013_C10.b :
LVR01_0093_C10.b : agccggggggtgattttattgaatgccaacccgaaaagcagaaaccccgggtgaacttcc
LVRM1_0079_C12.b :
LVRM1_0035_H03.b :
LVR01_0063_H11.b : GTGATGTATGATGTgaacagagagcagaaacccggcgaactgcagctcttcaatggatat
20110601C-013829 : ............................................................
---------+---------+---------+---------+---------+---------+ 945
LVRM1_0009_E11.b :
LVR01_0009_E03.b : ttttgtcccttcctttgctcctgaaagcctgggaccccatttcccaaaaaacttcccccc
LVRM1_0015_B11.b :
LVRM1_0026_B11.b :
LVRM1_0125_H12.b :
LVRM1_0186_G06.b :
LVRM1_0013_C10.b :
LVR01_0093_C10.b : atcctcttcaagggaatttttttgtcccatttttctttgttcccttaaaagctagggacc
LVRM1_0079_C12.b :
LVRM1_0035_H03.b :
LVR01_0063_H11.b : tttgtccacttctttgctcctgaaagcatggaacccaattcccaaaaacttcctctttgt
20110601C-013829 : ............................................................
---------+---------+---------+---------+---------+---------+ 945
LVRM1_0009_E11.b :
LVR01_0009_E03.b : tttgtcttttaaccttttaccggcccccgattgggggggggaaaaaaaaaagtaaaaacc
LVRM1_0015_B11.b :
LVRM1_0026_B11.b :
LVRM1_0125_H12.b :
LVRM1_0186_G06.b :
LVRM1_0013_C10.b :
LVR01_0093_C10.b : cccaatttcccccaaaaaactatccctcctttttgtaattttagaccttttaggcccgtt
LVRM1_0079_C12.b :
LVRM1_0035_H03.b :
LVR01_0063_H11.b : cctttgacgttagccggctccattgggggggaataaaaatgaaaacaaaacagtggaaac
20110601C-013829 : ............................................................
---------+---------+---------+---------+---------+---------+ 945
LVRM1_0009_E11.b :
LVR01_0009_E03.b : aaaaaaaggggggaaaaaaccccccgtgaaaaaaaacccacttttttgggggggggaaaa
LVRM1_0015_B11.b :
LVRM1_0026_B11.b :
LVRM1_0125_H12.b :
LVRM1_0186_G06.b :
LVRM1_0013_C10.b :
LVR01_0093_C10.b : cacttgggcggggggcgaaaaaaaaaaaagaaaaaaaacaacaagactgtgggaaaagac
LVRM1_0079_C12.b :
LVRM1_0035_H03.b :
LVR01_0063_H11.b : ccctgan
20110601C-013829 : ............................................................
---------+---------+---------+---------+---------+---------+ 945
LVRM1_0009_E11.b :
LVR01_0009_E03.b : aaaaccccctccccccgg
LVRM1_0015_B11.b :
LVRM1_0026_B11.b :
LVRM1_0125_H12.b :
LVRM1_0186_G06.b :
LVRM1_0013_C10.b :
LVR01_0093_C10.b : gccaattttaaaaaaacacccctatttcctgtggtgggaggaaatcccttctctccgcgg
LVRM1_0079_C12.b :
LVRM1_0035_H03.b :
LVR01_0063_H11.b :
20110601C-013829 : ............................................................
---------+---------+---------+---------+---------+---------+ 945
LVRM1_0009_E11.b :
LVR01_0009_E03.b :
LVRM1_0015_B11.b :
LVRM1_0026_B11.b :
LVRM1_0125_H12.b :
LVRM1_0186_G06.b :
LVRM1_0013_C10.b :
LVR01_0093_C10.b : gggtggcgcttgtagaagagggaaaacacacgacctatgtt
LVRM1_0079_C12.b :
LVRM1_0035_H03.b :
LVR01_0063_H11.b :