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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-014755

Length: 1,071

Sequence [FASTA format sequence]
CTTGGGGACC TAGAGAAAGG AAAATTCTGT GACTTTTATG CCTTGAAAGT AAGGAAGATT
ATTTTTTTAA AATATATATT GGTGTAATAT AAAAGAAGAT GCCTGAAGTT GTCACTGAAA
AACTCACTCT GTTAGAATAC ATAGGTATAT TGATTAGATG TGAATTCCAG AATTGGATTT
AAGTTTTTTT CAGATAAAAT AGCCTAAGCC TACATATTTG TTGGATAAGG AAGTCATAGA
AAATCCCTGG GTTTTTGAAC CGTATTTACT GAGGAACTTG GGTGACAATA ATTCCTGGCA
GATCCTGTGA CTGAAAAGGT CGCTTAGGTC TCGCAAATGA CCTGTTCTGC TAAAAAATAA
AATGTGTGCA CGTGCCTGTG TGCGTTTTAG ACAGGGCCAT CAGGATAGAA ACAGAGCCAT
GACCTAAGTT GTGGGGCCAT CGCTCCAACT GCTAGGACAG CAAGGGGTGA AATCACACAA
GGAATCCCTT CACTGAAGCT GATGAGGGCC GGGGCGGCTT GGAGGTTGAG AGACATCCTC
CCCGTAGACC GACCGTCCAG TGAGAGCAGG CCCCAGAGCA GTGAGCGGGC ATGTGGGGGG
AATGTGATTT CTTCAGATAT TTGCTCCAGA TCGTGCTGTA GTGTTTTTAC CTGCGGTCAG
AAATGTACAT GACATGGTTG GAGGTCATAT GATCCAAGTT TTAGGCTCAA GGACCACAAA
CCTTCCCTGA TTTCTCTGGG AGGGGATGAA AGTTCAATAA GTAGAACTTT TAAAGAACAG
CTTCACATCT AGTATTCAGT GAGGCCACCT CTGGAACAGT CTCTGGAGAT AAGGAGCCCT
GGCAGCTGTG CTCCGGGCTC GTAGAGAATG GGCTTCCGGG TGCAGCGCTC TTGTTTTGCC
TCAGCATTGG GTGCGGGGGG GAGGGTGGTC CCCCACCCTA CCAGCAACAG GGATGAAGGG
GAGAGGAGCT TTACCCCACT GATGCAAGGG GGGGTCACCC GCTCCTACAG CAAATATCCT
CAAAAGCTCT TTCTGATTTC TTGTGTAAAA GTTACTCTCA GTAGATTTTT T


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC100621964PREDICTED: t-complex protein 11-like protein 1-like [Sus scrofa]. 50.12e-06O


Assembly Members: 4      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
BFLT10091A11BFLT1_0091_A11.bFS647195 
OVRM10004B06OVRM1_0004_B06.bBP455964 
OVRM10004H03OVRM1_0004_H03.bBP461525 AK347857
OVRT10074A08OVRT1_0074_A08.bFS692401 

  

SNP: 1      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
613C020.500BNCCA/P
T200.500TCA/S


Alignment:      TOP

20110601C-014755 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
OVRM1_0004_H03.b : nagtttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
BFLT1_0091_A11.b :
OVRT1_0074_A08.b :
OVRM1_0004_B06.b :
20110601C-014755 : .CTTGGGGACCTAGAGAAAGGAAAATTCTGTGACTTTTATGCCTTGAAAGTAAGGAAGAT
---------+---------+---------+---------+---------+---------+ 59
OVRM1_0004_H03.b : xCTTGGGGACCTAGAGAAAGGAAAATTCTGTGACTTTTATGCCTTGAAAGTAAGGAAGat
BFLT1_0091_A11.b : aattccgttcagcgtcggxxxxxxxxxxxxxxxxxxxx
OVRT1_0074_A08.b :
OVRM1_0004_B06.b :
20110601C-014755 : TATTTTTTTAAAATATATATTGGTGTAATATAAAAGAAGATGCCTGAAGTTGTCACTGAA
---------+---------+---------+---------+---------+---------+ 119
OVRM1_0004_H03.b : tatttttttaaaatatatattGGTGTAATATAAAAGAAGATGCCTGAAGTTGTCACTGAA
BFLT1_0091_A11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAAGATGCCTGAAGTTGTCACTGAA
OVRT1_0074_A08.b : nntttgtttnnnnaaacccgttagcgnacgxxxxxxxxxxxxxxxxxxx
OVRM1_0004_B06.b :
20110601C-014755 : AAACTCACTCTGTTAGAATACATAGGTATATTGATTAGATGTGAATTCCAGAATTGGATT
---------+---------+---------+---------+---------+---------+ 179
OVRM1_0004_H03.b : AAACTCACTCTGTTAGAATACATAGGTATATTGATTAGATGTGAATTCCAGAATTGGATT
BFLT1_0091_A11.b : AAACTCACTCTGTTAGAATACATAGGTATATTGATTAGATGTGAATTCCAGAATTGGATT
OVRT1_0074_A08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTAGATGTGAATTCCAGAATTGGATT
OVRM1_0004_B06.b : nagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-014755 : TAAGTTTTTTTCAGATAAAATAGCCTAAGCCTACATATTTGTTGGATAAGGAAGTCATAG
---------+---------+---------+---------+---------+---------+ 239
OVRM1_0004_H03.b : TAAGTTTTTTTCAGATAAAATAGCCTAAGCCTACATATTTGTTGGATAAGGAAGTCATAG
BFLT1_0091_A11.b : TAAGTTTTTTTCAGATAAAATAGCCTAAGCCTACATATTTGTTGGATAAGGAAGTCATAG
OVRT1_0074_A08.b : TAAGTTTTTTTCAGATAAAATAGCCTAAGCCTACATATTTGTTGGATAAGGAAGTCATAG
OVRM1_0004_B06.b : xxxxxxxxxxxxxxxxxxxxTAGCCTAAGCCTACATATTTGTTGGATAAGGAAGTCATAG
20110601C-014755 : AAAATCCCTGGGTTTTTGAACCGTATTTACTGAGGAACTTGGGTGACAATAATTCCTGGC
---------+---------+---------+---------+---------+---------+ 299
OVRM1_0004_H03.b : AAAATCCCTGGGTTTTTGAACCGTATTTACTGAGGAACTTGGGTGACAATAATTCCTGGC
BFLT1_0091_A11.b : AAAATCCCTGGGTTTTTGAACCGTATTTACTGAGGAACTTGGGTGACAATAATTCCTGGC
OVRT1_0074_A08.b : AAAATCCCTGGGTTTTTGAACCGTATTTACTGAGGAACTTGGGTGACAATAATTCCTGGC
OVRM1_0004_B06.b : AAAATCCCTGGGTTTTTGAACCGTATTTACTGAGGAACTTGGGTGACAATAATTCCTGGC
20110601C-014755 : AGATCCTGTGACTGAAAAGGTCGCTTAGGTCTCGCAAATGACCTGTTCTGCTAAAAAATA
---------+---------+---------+---------+---------+---------+ 359
OVRM1_0004_H03.b : AGATCCTGTGACTGAAAAGGTCGCTTAGGTCTCGCAAATGACCTGTTCTGCTAAAAAATA
BFLT1_0091_A11.b : AGATCCTGTGACTGAAAAGGTCGCTTAGGTCTCGCAAATGACCTGTTCTGCTAAAAAATA
OVRT1_0074_A08.b : AGATCCTGTGACTGAAAAGGTCGCTTAGGTCTCGCAAATGACCTGTTCTGCTAAAAAATA
OVRM1_0004_B06.b : AGATCCTGTGACTGAAAAGGTCGCTTAGGTCTCGCAAATGACCTGTTCTGCTAAAAAATA
20110601C-014755 : AAATGTGTGCACGTGCCTGTGTGCGTTTTAGACAGGGCCATCAGGATAGAAACAGAGCCA
---------+---------+---------+---------+---------+---------+ 419
OVRM1_0004_H03.b : AAATGTGTGCACGTGCCTGTGTGCGTTTTACACAGGGCCATCACGATAGAAACAGAGCCA
BFLT1_0091_A11.b : AAATGTGTGCACGTGCCTGTGTGCGTTTTAGACAGGGCCATCAGGATAGAAACAGAGCCA
OVRT1_0074_A08.b : AAATGTGTGCACGTGCCTGTGTGCGTTTTAGACAGGGCCATCAGGATAGAAACAGAGCCA
OVRM1_0004_B06.b : AAATGTGTGCACGTGCCTGTGTGCGTTTTAGACAGGGCCATCAGGATAGAAACAGAGCCA
20110601C-014755 : TGACCTAAGTTGTGGGGCCATCGCTCCAACTGCTAGGACAGCAAGGGGTGAAATCACACA
---------+---------+---------+---------+---------+---------+ 479
OVRM1_0004_H03.b : TGACCTAAGTTGTGGGGCCATCGCTCCAACTGCTAGGACAGCAAGGGGTGAAATCACACA
BFLT1_0091_A11.b : TGACCTAAGTTGTGGGGCCATCGCTCCAACTGCTAGGACAGCAAGGGGTGAAATCACACA
OVRT1_0074_A08.b : TGACCTAAGTTGTGGGGCCATCGCTCCAACTGCTAGGACAGCAAGGGGTGAAATCACACA
OVRM1_0004_B06.b : TGACCTAAGTTGTGGGGCCATCGCTCCAACTGCTAGGACAGCAAGGGGTGAAATCACACA
20110601C-014755 : AGGAATCCCTTCACTGAAGCTGATGAGGGCCGGGGCGGCTTGGAGGTTGAGAGACATCCT
---------+---------+---------+---------+---------+---------+ 539
OVRM1_0004_H03.b : AGGAATCCCTTCACTGAAGCTGATGAGGGCCGGGGCGGCTTGGAAGTTGAGAGACATCCT
BFLT1_0091_A11.b : AGGAATCCCTTCACTGAAGCTGATGAGGGCCGGGGCGGCTTGGAGGTTGAGAGACATCCT
OVRT1_0074_A08.b : AGGAATCCCTTCACTGAAGCTGATGAGGGCCGGGGCGGCTTGGAGGTTGAGAGACATCCT
OVRM1_0004_B06.b : AGGAATCCCTTCACTGAAGCTGATGAGGGCCGGGGCGGCTTGGAGGTTGAGAGACATCCT
20110601C-014755 : CCCCGTAGACCGACCGTCCAGTGAGAGCAGGCCCCAGAGCAGTGAGCGGGCATGTGGGGG
---------+---------+---------+---------+---------+---------+ 599
OVRM1_0004_H03.b : CCCCGTAGACCGACCGTCCAGTGAGAGCAGGCCCCAGAGCAGTGAGCGGGCATGTGGGGG
BFLT1_0091_A11.b : CCCCGTAGACCAACCGTCCAGTGAGAGCAGGCCCCAGAGCAGTGAGCGGGCATGTGGGGG
OVRT1_0074_A08.b : CCCCGTAGACCGACCGTCCAGTGAGAGCAGGCCCCAGAGCAGTGAGCGGGCATGTGGGGG
OVRM1_0004_B06.b : CCCCGTAGACCGACCGTCCAGTGAGAGCAGGCCCCAGAGCAGTGAGCGGGCATGTGGGGG
20110601C-014755 : GAATGTGATTTCTTCAGATATTTGCTCCAGATCGTGCTGTAGTGTTTTTACCTGCGGTCA
---------+---------+---------+---------+---------+---------+ 659
OVRM1_0004_H03.b : GAATGTGATTTCTCCACATATTTGCTCCAGATCGTGCTGTAGTGTTTTTACCTGCGGTCA
BFLT1_0091_A11.b : GAATGTGATTTCTTCAGATATTTGCTCCAGATCGTGCTGTAGTGTTTTTACCTGCGGTCA
OVRT1_0074_A08.b : GAATGTGATTTCTTCAGATATTTGCTCCAGATCGTGCTGTAGTGTTTTTACCTGCGGTCA
OVRM1_0004_B06.b : GAATGTGATTTCTCCAGATATTTGCTCCAGATCGTGCTGTAGTGTTTTTACCTGCGGTCA
20110601C-014755 : GAAATGTACATGACATGGTTGGAGGTCATATGATCCAAGTTTTAGGCTCAAGGACCACAA
---------+---------+---------+---------+---------+---------+ 719
OVRM1_0004_H03.b : GAA*CGTACATGACATGGTTGGAGGTCATATGATCCAAGTTTTAGGCTCAAGGACCACAA
BFLT1_0091_A11.b : GAAATGTACATGACATGGTTGGAGGTCATATGATCCAAGTTTTAGGCTCAAGGACCACAA
OVRT1_0074_A08.b : GAAATGTACATGACATGGTTGGAGGTCATATGATCCAAGTTTTAGGCTCAAGGACCACAA
OVRM1_0004_B06.b : GAAACGTACATGACATGGTTGGAGGTCATATGATCCAAGTTTTAGGCTCAAGGACCACAA
20110601C-014755 : ACCTTCCCTGATTTCTCTGGGAGGGGATGAAAGTTCAATAAGTAGAACTTTTAAAGAACA
---------+---------+---------+---------+---------+---------+ 779
OVRM1_0004_H03.b : ACCTTCCGTGATTTCTCGGGGgacgcgatgaaaattcaataac
BFLT1_0091_A11.b : ACCTTCCCTGATTTCTCTGGGAGGGGATGAAAGTTCAATAAGTAGAACTTTTAAAGAACA
OVRT1_0074_A08.b : ACCTTCCCTGATTTCTCTGGGAGGGGATGAAAGTTCAATAAGTAGAACTTTTAAAGAACA
OVRM1_0004_B06.b : ACCTTCCCTGATTTCTCTGGGAGGGGATGAAAGTTCAATAAGTAGAACTTTTAAAGAACA
20110601C-014755 : GCTTCACATCTAGTATTCAGTGAGGCCACCTCTGGAACAGTCTCTGGAGATAAGGAGCCC
---------+---------+---------+---------+---------+---------+ 839
OVRM1_0004_H03.b :
BFLT1_0091_A11.b : GCTTCACATCTAGTATTCAGTGAGGCCACCTCTGGAACAGTCTCTGGAGATAAGGAGCCC
OVRT1_0074_A08.b : GCTTCACATCTAGTATTCAGTGAGGCCACCTCTGGAACAGTCTCTGGAGATAAGGAGCCC
OVRM1_0004_B06.b : GCTTCACATCTCGTATTCAGTGAGGCCACCTCTGGAACAGTCTCTGGAGATAAGGAGCCC
20110601C-014755 : TGGCAGCTGTGCTCCGGGCTCGTAGAGAATGGGCTTCCGGGTGCAGCGCTCTTGTTTT*G
---------+---------+---------+---------+---------+---------+ 898
OVRM1_0004_H03.b :
BFLT1_0091_A11.b : TGGCAGCTGTGCTCCGGGCTCGTAGAGAATGGGCTTCCGGGTGCAGCGCTCTTGTTTT*G
OVRT1_0074_A08.b : TGGCAGCTGTGCTCCGGGCTCGTAGAGAATGGGCTTCCGGGTGCAGCGCTCTTGTTTTTG
OVRM1_0004_B06.b : TGGCAGCTGTGCTCCGGGCTCGTAGAGAATGGGCTTCCGGGTGCAGCGCTCTTGTTTTtg
20110601C-014755 : CCTCAGCATTGGGTGCGGGGGGGAGGGTGGTCCCCCACCCTACCAGCAACAGGGATGAAG
---------+---------+---------+---------+---------+---------+ 958
OVRM1_0004_H03.b :
BFLT1_0091_A11.b : CCTCAACATTGGGTGCGGGGGG*AGGGTGGTCCCCCACCCTACCANNCACAGGGATGAAG
OVRT1_0074_A08.b : CCTCAGCATTGGGTGCGGGGGGGAGGGTGGTCCCCCACCCTACCAGCAACAGGGATGAAG
OVRM1_0004_B06.b : cctcagcgttggtggccgggggggagggtgnncnncnnncnnccccccggncggcgccgc
20110601C-014755 : GGGAGAGGAGCTTTA*CCCCACTGATGCAAGGGGGGGTCACCCGCTCCTACAGCAAATAT
---------+---------+---------+---------+---------+---------+ 1017
OVRM1_0004_H03.b :
BFLT1_0091_A11.b : GGGAGAGGAGCTTTA*CCCCACTGATGCAGGGGGGGGTCACCCGCTCCTACGGCAAtaat
OVRT1_0074_A08.b : GGGAGAGGAGCTTTACCCCCACTGATGCAAGGGGGGGTCACCCGCTCCTACAGCAAATAT
OVRM1_0004_B06.b : cgcg
20110601C-014755 : CCTCAAAAGCTCTTTCTGATTTCTTGTGTAAAAGTTACTCTCAGTAGATTTTTT......
---------+---------+---------+---------+---------+---------+ 1071
OVRM1_0004_H03.b :
BFLT1_0091_A11.b : ctcaaaaactctttcggattcttgggtaaaaataaactcccataaaatttttttccccct
OVRT1_0074_A08.b : CCTCAAAAGCTCTTTCTGATTTCTTGTGTAAAAGTTACTCTCAGTAGATTTTTTtccccc
OVRM1_0004_B06.b :
20110601C-014755 : ............................................................
---------+---------+---------+---------+---------+---------+ 1071
OVRM1_0004_H03.b :
BFLT1_0091_A11.b : ccaggattcctactggcccaaagggaatttggacgccttaaatctaaaacctattgaacg
OVRT1_0074_A08.b : ctcatggaattcctactgcacaagtggagcttggacagctgaaatctagatgcataggta
OVRM1_0004_B06.b :
20110601C-014755 : ............................................................
---------+---------+---------+---------+---------+---------+ 1071
OVRM1_0004_H03.b :
BFLT1_0091_A11.b : gggagggcccaaacccccgggccccccaacctcaggccccgggggaattctcccaaacca
OVRT1_0074_A08.b : caaggagcggtccaaactccggggtcccaatactcagggccactggtggattctccaaga
OVRM1_0004_B06.b :
20110601C-014755 : ............................................................
---------+---------+---------+---------+---------+---------+ 1071
OVRM1_0004_H03.b :
BFLT1_0091_A11.b : aaagaagggcgaatttcaaaccccaattccaattgaggggtttgtgtggtcttttaaaaa
OVRT1_0074_A08.b : cccaatggagggcaaattcaaaacccgattctattgaaaggtttgttgtgcccttgaaaa
OVRM1_0004_B06.b :
20110601C-014755 : ............................................................
---------+---------+---------+---------+---------+---------+ 1071
OVRM1_0004_H03.b :
BFLT1_0091_A11.b : aaagaccaattggggtttggtttgttttgttttcccggggggcgtgggtatcccaggggg
OVRT1_0074_A08.b : aagaaacaatttgggttgtttttgttttgtttttcccgggggcttggatacccaaaggga
OVRM1_0004_B06.b :
20110601C-014755 : ............................................................
---------+---------+---------+---------+---------+---------+ 1071
OVRM1_0004_H03.b :
BFLT1_0091_A11.b : aagattttatttccccggaagggt
OVRT1_0074_A08.b : aaattcatatccccccgaaagtttgaaagtgtgacccccccaagtctccccaaaaaaaat
OVRM1_0004_B06.b :
20110601C-014755 : ............................................................
---------+---------+---------+---------+---------+---------+ 1071
OVRM1_0004_H03.b :
BFLT1_0091_A11.b :
OVRT1_0074_A08.b : tttggaaatctttgaaaaaatttttttggcgccagtgttaaaaaattccccaacggtgga
OVRM1_0004_B06.b :
20110601C-014755 : ............................................................
---------+---------+---------+---------+---------+---------+ 1071
OVRM1_0004_H03.b :
BFLT1_0091_A11.b :
OVRT1_0074_A08.b : aaaaatctttgagagaaatttggaatatacacaggacgcccttgtggggt
OVRM1_0004_B06.b :