Assembly Overview: TOP
BLAST on RefSeq (Human): TOP
| | Locus | Definition | Score | E value | FL |
---|
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
---|
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
---|
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
---|
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| LOC100621964 | PREDICTED: t-complex protein 11-like protein 1-like [Sus scrofa]. | 50.1 | 2e-06 | O |
Alignment: TOP
20110601C-014755 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
OVRM1_0004_H03.b : nagtttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
BFLT1_0091_A11.b :
OVRT1_0074_A08.b :
OVRM1_0004_B06.b :
20110601C-014755 : .CTTGGGGACCTAGAGAAAGGAAAATTCTGTGACTTTTATGCCTTGAAAGTAAGGAAGAT
---------+---------+---------+---------+---------+---------+ 59
OVRM1_0004_H03.b : xCTTGGGGACCTAGAGAAAGGAAAATTCTGTGACTTTTATGCCTTGAAAGTAAGGAAGat
BFLT1_0091_A11.b : aattccgttcagcgtcggxxxxxxxxxxxxxxxxxxxx
OVRT1_0074_A08.b :
OVRM1_0004_B06.b :
20110601C-014755 : TATTTTTTTAAAATATATATTGGTGTAATATAAAAGAAGATGCCTGAAGTTGTCACTGAA
---------+---------+---------+---------+---------+---------+ 119
OVRM1_0004_H03.b : tatttttttaaaatatatattGGTGTAATATAAAAGAAGATGCCTGAAGTTGTCACTGAA
BFLT1_0091_A11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAAGATGCCTGAAGTTGTCACTGAA
OVRT1_0074_A08.b : nntttgtttnnnnaaacccgttagcgnacgxxxxxxxxxxxxxxxxxxx
OVRM1_0004_B06.b :
20110601C-014755 : AAACTCACTCTGTTAGAATACATAGGTATATTGATTAGATGTGAATTCCAGAATTGGATT
---------+---------+---------+---------+---------+---------+ 179
OVRM1_0004_H03.b : AAACTCACTCTGTTAGAATACATAGGTATATTGATTAGATGTGAATTCCAGAATTGGATT
BFLT1_0091_A11.b : AAACTCACTCTGTTAGAATACATAGGTATATTGATTAGATGTGAATTCCAGAATTGGATT
OVRT1_0074_A08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTAGATGTGAATTCCAGAATTGGATT
OVRM1_0004_B06.b : nagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-014755 : TAAGTTTTTTTCAGATAAAATAGCCTAAGCCTACATATTTGTTGGATAAGGAAGTCATAG
---------+---------+---------+---------+---------+---------+ 239
OVRM1_0004_H03.b : TAAGTTTTTTTCAGATAAAATAGCCTAAGCCTACATATTTGTTGGATAAGGAAGTCATAG
BFLT1_0091_A11.b : TAAGTTTTTTTCAGATAAAATAGCCTAAGCCTACATATTTGTTGGATAAGGAAGTCATAG
OVRT1_0074_A08.b : TAAGTTTTTTTCAGATAAAATAGCCTAAGCCTACATATTTGTTGGATAAGGAAGTCATAG
OVRM1_0004_B06.b : xxxxxxxxxxxxxxxxxxxxTAGCCTAAGCCTACATATTTGTTGGATAAGGAAGTCATAG
20110601C-014755 : AAAATCCCTGGGTTTTTGAACCGTATTTACTGAGGAACTTGGGTGACAATAATTCCTGGC
---------+---------+---------+---------+---------+---------+ 299
OVRM1_0004_H03.b : AAAATCCCTGGGTTTTTGAACCGTATTTACTGAGGAACTTGGGTGACAATAATTCCTGGC
BFLT1_0091_A11.b : AAAATCCCTGGGTTTTTGAACCGTATTTACTGAGGAACTTGGGTGACAATAATTCCTGGC
OVRT1_0074_A08.b : AAAATCCCTGGGTTTTTGAACCGTATTTACTGAGGAACTTGGGTGACAATAATTCCTGGC
OVRM1_0004_B06.b : AAAATCCCTGGGTTTTTGAACCGTATTTACTGAGGAACTTGGGTGACAATAATTCCTGGC
20110601C-014755 : AGATCCTGTGACTGAAAAGGTCGCTTAGGTCTCGCAAATGACCTGTTCTGCTAAAAAATA
---------+---------+---------+---------+---------+---------+ 359
OVRM1_0004_H03.b : AGATCCTGTGACTGAAAAGGTCGCTTAGGTCTCGCAAATGACCTGTTCTGCTAAAAAATA
BFLT1_0091_A11.b : AGATCCTGTGACTGAAAAGGTCGCTTAGGTCTCGCAAATGACCTGTTCTGCTAAAAAATA
OVRT1_0074_A08.b : AGATCCTGTGACTGAAAAGGTCGCTTAGGTCTCGCAAATGACCTGTTCTGCTAAAAAATA
OVRM1_0004_B06.b : AGATCCTGTGACTGAAAAGGTCGCTTAGGTCTCGCAAATGACCTGTTCTGCTAAAAAATA
20110601C-014755 : AAATGTGTGCACGTGCCTGTGTGCGTTTTAGACAGGGCCATCAGGATAGAAACAGAGCCA
---------+---------+---------+---------+---------+---------+ 419
OVRM1_0004_H03.b : AAATGTGTGCACGTGCCTGTGTGCGTTTTACACAGGGCCATCACGATAGAAACAGAGCCA
BFLT1_0091_A11.b : AAATGTGTGCACGTGCCTGTGTGCGTTTTAGACAGGGCCATCAGGATAGAAACAGAGCCA
OVRT1_0074_A08.b : AAATGTGTGCACGTGCCTGTGTGCGTTTTAGACAGGGCCATCAGGATAGAAACAGAGCCA
OVRM1_0004_B06.b : AAATGTGTGCACGTGCCTGTGTGCGTTTTAGACAGGGCCATCAGGATAGAAACAGAGCCA
20110601C-014755 : TGACCTAAGTTGTGGGGCCATCGCTCCAACTGCTAGGACAGCAAGGGGTGAAATCACACA
---------+---------+---------+---------+---------+---------+ 479
OVRM1_0004_H03.b : TGACCTAAGTTGTGGGGCCATCGCTCCAACTGCTAGGACAGCAAGGGGTGAAATCACACA
BFLT1_0091_A11.b : TGACCTAAGTTGTGGGGCCATCGCTCCAACTGCTAGGACAGCAAGGGGTGAAATCACACA
OVRT1_0074_A08.b : TGACCTAAGTTGTGGGGCCATCGCTCCAACTGCTAGGACAGCAAGGGGTGAAATCACACA
OVRM1_0004_B06.b : TGACCTAAGTTGTGGGGCCATCGCTCCAACTGCTAGGACAGCAAGGGGTGAAATCACACA
20110601C-014755 : AGGAATCCCTTCACTGAAGCTGATGAGGGCCGGGGCGGCTTGGAGGTTGAGAGACATCCT
---------+---------+---------+---------+---------+---------+ 539
OVRM1_0004_H03.b : AGGAATCCCTTCACTGAAGCTGATGAGGGCCGGGGCGGCTTGGAAGTTGAGAGACATCCT
BFLT1_0091_A11.b : AGGAATCCCTTCACTGAAGCTGATGAGGGCCGGGGCGGCTTGGAGGTTGAGAGACATCCT
OVRT1_0074_A08.b : AGGAATCCCTTCACTGAAGCTGATGAGGGCCGGGGCGGCTTGGAGGTTGAGAGACATCCT
OVRM1_0004_B06.b : AGGAATCCCTTCACTGAAGCTGATGAGGGCCGGGGCGGCTTGGAGGTTGAGAGACATCCT
20110601C-014755 : CCCCGTAGACCGACCGTCCAGTGAGAGCAGGCCCCAGAGCAGTGAGCGGGCATGTGGGGG
---------+---------+---------+---------+---------+---------+ 599
OVRM1_0004_H03.b : CCCCGTAGACCGACCGTCCAGTGAGAGCAGGCCCCAGAGCAGTGAGCGGGCATGTGGGGG
BFLT1_0091_A11.b : CCCCGTAGACCAACCGTCCAGTGAGAGCAGGCCCCAGAGCAGTGAGCGGGCATGTGGGGG
OVRT1_0074_A08.b : CCCCGTAGACCGACCGTCCAGTGAGAGCAGGCCCCAGAGCAGTGAGCGGGCATGTGGGGG
OVRM1_0004_B06.b : CCCCGTAGACCGACCGTCCAGTGAGAGCAGGCCCCAGAGCAGTGAGCGGGCATGTGGGGG
20110601C-014755 : GAATGTGATTTCTTCAGATATTTGCTCCAGATCGTGCTGTAGTGTTTTTACCTGCGGTCA
---------+---------+---------+---------+---------+---------+ 659
OVRM1_0004_H03.b : GAATGTGATTTCTCCACATATTTGCTCCAGATCGTGCTGTAGTGTTTTTACCTGCGGTCA
BFLT1_0091_A11.b : GAATGTGATTTCTTCAGATATTTGCTCCAGATCGTGCTGTAGTGTTTTTACCTGCGGTCA
OVRT1_0074_A08.b : GAATGTGATTTCTTCAGATATTTGCTCCAGATCGTGCTGTAGTGTTTTTACCTGCGGTCA
OVRM1_0004_B06.b : GAATGTGATTTCTCCAGATATTTGCTCCAGATCGTGCTGTAGTGTTTTTACCTGCGGTCA
20110601C-014755 : GAAATGTACATGACATGGTTGGAGGTCATATGATCCAAGTTTTAGGCTCAAGGACCACAA
---------+---------+---------+---------+---------+---------+ 719
OVRM1_0004_H03.b : GAA*CGTACATGACATGGTTGGAGGTCATATGATCCAAGTTTTAGGCTCAAGGACCACAA
BFLT1_0091_A11.b : GAAATGTACATGACATGGTTGGAGGTCATATGATCCAAGTTTTAGGCTCAAGGACCACAA
OVRT1_0074_A08.b : GAAATGTACATGACATGGTTGGAGGTCATATGATCCAAGTTTTAGGCTCAAGGACCACAA
OVRM1_0004_B06.b : GAAACGTACATGACATGGTTGGAGGTCATATGATCCAAGTTTTAGGCTCAAGGACCACAA
20110601C-014755 : ACCTTCCCTGATTTCTCTGGGAGGGGATGAAAGTTCAATAAGTAGAACTTTTAAAGAACA
---------+---------+---------+---------+---------+---------+ 779
OVRM1_0004_H03.b : ACCTTCCGTGATTTCTCGGGGgacgcgatgaaaattcaataac
BFLT1_0091_A11.b : ACCTTCCCTGATTTCTCTGGGAGGGGATGAAAGTTCAATAAGTAGAACTTTTAAAGAACA
OVRT1_0074_A08.b : ACCTTCCCTGATTTCTCTGGGAGGGGATGAAAGTTCAATAAGTAGAACTTTTAAAGAACA
OVRM1_0004_B06.b : ACCTTCCCTGATTTCTCTGGGAGGGGATGAAAGTTCAATAAGTAGAACTTTTAAAGAACA
20110601C-014755 : GCTTCACATCTAGTATTCAGTGAGGCCACCTCTGGAACAGTCTCTGGAGATAAGGAGCCC
---------+---------+---------+---------+---------+---------+ 839
OVRM1_0004_H03.b :
BFLT1_0091_A11.b : GCTTCACATCTAGTATTCAGTGAGGCCACCTCTGGAACAGTCTCTGGAGATAAGGAGCCC
OVRT1_0074_A08.b : GCTTCACATCTAGTATTCAGTGAGGCCACCTCTGGAACAGTCTCTGGAGATAAGGAGCCC
OVRM1_0004_B06.b : GCTTCACATCTCGTATTCAGTGAGGCCACCTCTGGAACAGTCTCTGGAGATAAGGAGCCC
20110601C-014755 : TGGCAGCTGTGCTCCGGGCTCGTAGAGAATGGGCTTCCGGGTGCAGCGCTCTTGTTTT*G
---------+---------+---------+---------+---------+---------+ 898
OVRM1_0004_H03.b :
BFLT1_0091_A11.b : TGGCAGCTGTGCTCCGGGCTCGTAGAGAATGGGCTTCCGGGTGCAGCGCTCTTGTTTT*G
OVRT1_0074_A08.b : TGGCAGCTGTGCTCCGGGCTCGTAGAGAATGGGCTTCCGGGTGCAGCGCTCTTGTTTTTG
OVRM1_0004_B06.b : TGGCAGCTGTGCTCCGGGCTCGTAGAGAATGGGCTTCCGGGTGCAGCGCTCTTGTTTTtg
20110601C-014755 : CCTCAGCATTGGGTGCGGGGGGGAGGGTGGTCCCCCACCCTACCAGCAACAGGGATGAAG
---------+---------+---------+---------+---------+---------+ 958
OVRM1_0004_H03.b :
BFLT1_0091_A11.b : CCTCAACATTGGGTGCGGGGGG*AGGGTGGTCCCCCACCCTACCANNCACAGGGATGAAG
OVRT1_0074_A08.b : CCTCAGCATTGGGTGCGGGGGGGAGGGTGGTCCCCCACCCTACCAGCAACAGGGATGAAG
OVRM1_0004_B06.b : cctcagcgttggtggccgggggggagggtgnncnncnnncnnccccccggncggcgccgc
20110601C-014755 : GGGAGAGGAGCTTTA*CCCCACTGATGCAAGGGGGGGTCACCCGCTCCTACAGCAAATAT
---------+---------+---------+---------+---------+---------+ 1017
OVRM1_0004_H03.b :
BFLT1_0091_A11.b : GGGAGAGGAGCTTTA*CCCCACTGATGCAGGGGGGGGTCACCCGCTCCTACGGCAAtaat
OVRT1_0074_A08.b : GGGAGAGGAGCTTTACCCCCACTGATGCAAGGGGGGGTCACCCGCTCCTACAGCAAATAT
OVRM1_0004_B06.b : cgcg
20110601C-014755 : CCTCAAAAGCTCTTTCTGATTTCTTGTGTAAAAGTTACTCTCAGTAGATTTTTT......
---------+---------+---------+---------+---------+---------+ 1071
OVRM1_0004_H03.b :
BFLT1_0091_A11.b : ctcaaaaactctttcggattcttgggtaaaaataaactcccataaaatttttttccccct
OVRT1_0074_A08.b : CCTCAAAAGCTCTTTCTGATTTCTTGTGTAAAAGTTACTCTCAGTAGATTTTTTtccccc
OVRM1_0004_B06.b :
20110601C-014755 : ............................................................
---------+---------+---------+---------+---------+---------+ 1071
OVRM1_0004_H03.b :
BFLT1_0091_A11.b : ccaggattcctactggcccaaagggaatttggacgccttaaatctaaaacctattgaacg
OVRT1_0074_A08.b : ctcatggaattcctactgcacaagtggagcttggacagctgaaatctagatgcataggta
OVRM1_0004_B06.b :
20110601C-014755 : ............................................................
---------+---------+---------+---------+---------+---------+ 1071
OVRM1_0004_H03.b :
BFLT1_0091_A11.b : gggagggcccaaacccccgggccccccaacctcaggccccgggggaattctcccaaacca
OVRT1_0074_A08.b : caaggagcggtccaaactccggggtcccaatactcagggccactggtggattctccaaga
OVRM1_0004_B06.b :
20110601C-014755 : ............................................................
---------+---------+---------+---------+---------+---------+ 1071
OVRM1_0004_H03.b :
BFLT1_0091_A11.b : aaagaagggcgaatttcaaaccccaattccaattgaggggtttgtgtggtcttttaaaaa
OVRT1_0074_A08.b : cccaatggagggcaaattcaaaacccgattctattgaaaggtttgttgtgcccttgaaaa
OVRM1_0004_B06.b :
20110601C-014755 : ............................................................
---------+---------+---------+---------+---------+---------+ 1071
OVRM1_0004_H03.b :
BFLT1_0091_A11.b : aaagaccaattggggtttggtttgttttgttttcccggggggcgtgggtatcccaggggg
OVRT1_0074_A08.b : aagaaacaatttgggttgtttttgttttgtttttcccgggggcttggatacccaaaggga
OVRM1_0004_B06.b :
20110601C-014755 : ............................................................
---------+---------+---------+---------+---------+---------+ 1071
OVRM1_0004_H03.b :
BFLT1_0091_A11.b : aagattttatttccccggaagggt
OVRT1_0074_A08.b : aaattcatatccccccgaaagtttgaaagtgtgacccccccaagtctccccaaaaaaaat
OVRM1_0004_B06.b :
20110601C-014755 : ............................................................
---------+---------+---------+---------+---------+---------+ 1071
OVRM1_0004_H03.b :
BFLT1_0091_A11.b :
OVRT1_0074_A08.b : tttggaaatctttgaaaaaatttttttggcgccagtgttaaaaaattccccaacggtgga
OVRM1_0004_B06.b :
20110601C-014755 : ............................................................
---------+---------+---------+---------+---------+---------+ 1071
OVRM1_0004_H03.b :
BFLT1_0091_A11.b :
OVRT1_0074_A08.b : aaaaatctttgagagaaatttggaatatacacaggacgcccttgtggggt
OVRM1_0004_B06.b :