Supplementary Table 1


This page indicates the current status of sequencing and assembling of the PEDE ESTs. Numbers in this table will be automatically updated when a new assembly is released.

Sequencing

LibraryTissueOriginClonesEST readsHigh quality reads
ADR01 Adrenal gland LWD 901 9,792 9,070
AMP01 Alveolar macrophages LWD 1,416 9,791 7,725
BFLT1 Brain (frontal lobe) Duroc 991 14,592 11,900
BKFL1 Backfat Landrace 453 10,560 8,538
BMWN1 Bone marrow Landrace 148 9,600 6,101
CLNT1 Colon Duroc 537 14,592 11,325
DCI01 Dendritic cells (immature) Landrace 887 11,327 9,468
HTMT1 Hypothalamus Duroc 1,663 14,591 10,480
ITT01 Intestine LWD 1,265 9,792 9,190
KDN01 Kidney LWD 748 9,600 7,182
LNG01 Lung LWD 1,331 9,599 7,908
LVR01 Liver LWD 779 9,120 8,284
LVRM1 Liver Meishan 1,844 19,572 17,544
MLN01 Mesenteric lymph nodes LWD 1,176 9,792 8,972
MLTL1 Longissimus muscle Landrace 413 8,637 7,933
OVR01 Ovary LWD 1,416 9,598 8,234
OVRM1 Ovary Meishan 3,309 20,735 17,924
OVRT1 Ovary Duroc 819 14,592 12,439
PBL01 PBMC LWD 957 10,272 8,979
PCT01 Placenta LWD 161 3,456 2,485
PST01 Prostate LWD 691 9,600 7,748
PTG01 Pituitary gland LWD 864 10,272 8,678
SKNB1 Skin Berkshire 687 9,504 6,101
SMG01 Submaxillary gland LWD 458 9,888 8,706
SPL01 Spleen LWD 1,457 9,764 8,974
TCH01 Trachea LWD 1,412 9,888 7,903
TES01 Testis LWD 697 10,752 7,556
THY01 Thymus LWD 2,158 11,522 10,190
UTR01 Uterus LWD 1,441 9,550 8,984
Total 31,079 320,350 266,521

PBMC: Peripheral blood mononuclear cells
LWD: (Landrace x Large White) x Duroc

Assemblies

Release: 20110601

Contigs 17,183
Singlets 120,928

Number of membersContigs
26,740
32,552
41,422
5998
6759
7514
8428
9361
10257
11 - 201,494
21 - 30574
31 - 40284
41 - 50177
51 - 100345
101 - 200163
201 - 30043
301 - 40019
401 - 50019
501 - 100024
1001 + 10