Search to ncbiHGDS database
Query= 20030531C-000104 (20030531C-000104) 20030531C-000104
(1059 letters)
Database: Homo Sapiens Gene(masked sequence)
1395 sequences; 2,826,392,627 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|22059322|ref|NT_009458.11|Hs12_9615 Homo sapiens chromosome ... 274 9e-71
Alignment gi|22044651|ref|NT_005332.10|Hs2_5489 Homo sapiens chromosome 2... 44 0.16
Alignment gi|22058028|ref|NT_007299.10|Hs6_7456 Homo sapiens chromosome 6... 40 2.4
Alignment gi|22051319|ref|NT_011145.12|Hs19_11302 Homo sapiens chromosome... 40 2.4
Alignment gi|22057507|ref|NT_030828.6|Hs15_31084 Homo sapiens chromosome ... 40 2.4
Alignment gi|22050229|ref|NT_026437.8|Hs14_26604 Homo sapiens chromosome ... 40 2.4
Alignment gi|22048717|ref|NT_025892.9|Hs14_26048 Homo sapiens chromosome ... 40 2.4
Alignment gi|22061219|ref|NT_017854.12|Hs11_18010 Homo sapiens chromosome... 40 2.4
Alignment gi|22060245|ref|NT_035616.1|HsX_35778 Homo sapiens chromosome X... 38 9.6
Alignment gi|22059057|ref|NT_025323.5|HsX_25479 Homo sapiens chromosome X... 38 9.6
Alignment gi|22059011|ref|NT_025319.10|HsX_25475 Homo sapiens chromosome ... 38 9.6
Alignment gi|22056420|ref|NT_011669.10|HsX_11826 Homo sapiens chromosome ... 38 9.6
Alignment gi|22045479|ref|NT_023935.12|Hs9_24091 Homo sapiens chromosome ... 38 9.6
Alignment gi|22045221|ref|NT_017568.10|Hs9_17724 Homo sapiens chromosome ... 38 9.6
Alignment gi|22050628|ref|NT_007933.10|Hs7_8090 Homo sapiens chromosome 7... 38 9.6
Alignment gi|22061075|ref|NT_007592.10|Hs6_7749 Homo sapiens chromosome 6... 38 9.6
Alignment gi|22053317|ref|NT_019424.10|Hs6_19580 Homo sapiens chromosome ... 38 9.6
Alignment gi|22052191|ref|NT_006713.10|Hs5_6870 Homo sapiens chromosome 5... 38 9.6
Alignment gi|22051331|ref|NT_006576.10|Hs5_6733 Homo sapiens chromosome 5... 38 9.6
Alignment gi|22049321|ref|NT_034773.1|Hs5_34935 Homo sapiens chromosome 5... 38 9.6
>gi|22059322|ref|NT_009458.11|Hs12_9615 Homo sapiens chromosome 12 reference
genomic contig
Length = 1652229
Score = 274 bits (138), Expect = 9e-71
Identities = 270/314 (85%)
Strand = Plus / Plus
Query: 168 atgtggctgtacctggctgtcctcgtgggcctgtactacctccttcgctggtaccgggaa 227
|||||||| |||||||| | | ||||||||||||||||||| || | ||||||||||||
Sbjct: 1277754 atgtggctctacctggcggccttcgtgggcctgtactaccttctgcactggtaccgggag 1277813
Query: 228 aggcagatggttagccaccttggggataagtatgtcttcatcacgggctgtgactcgggc 287
|||||| |||| |||||||| || ||||||||||| |||||||||||||||||||||
Sbjct: 1277814 aggcaggtggtgagccacctccaagacaagtatgtctttatcacgggctgtgactcgggc 1277873
Query: 288 tttgggaacctgctggcgaggcagctggatgtgaggggcttgagggtcctggctgcatgt 347
||||||||||||||||| || |||||||||| | |||||||| || |||||||| |||
Sbjct: 1277874 tttgggaacctgctggccagacagctggatgcacgaggcttgagagtgctggctgcgtgt 1277933
Query: 348 ctgacggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacggtg 407
||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct: 1277934 ctgacggagaagggggccgagcagctgaggggccagacgtctgacaggctggagacggtg 1277993
Query: 408 ctcttggacgtgaccaagacagagagcattgctgcggccacccagtgggtgaaggagcgt 467
| |||| || ||||||| |||||||| ||||| || || |||||||||||||||| |
Sbjct: 1277994 accctggatgttaccaagatggagagcatcgctgcagctactcagtgggtgaaggagcat 1278053
Query: 468 gtcggggacagagg 481
|| |||||||||||
Sbjct: 1278054 gtgggggacagagg 1278067
Score = 260 bits (131), Expect = 1e-66
Identities = 257/299 (85%)
Strand = Plus / Minus
Query: 166 ccatgtggctgtacctggctgtcctcgtgggcctgtactacctccttcgctggtaccggg 225
|||||||||| |||||||| || ||||||||||||||||||| || | |||||||||||
Sbjct: 1463339 ccatgtggctctacctggcggttttcgtgggcctgtactaccttctgcactggtaccggg 1463280
Query: 226 aaaggcagatggttagccaccttggggataagtatgtcttcatcacgggctgtgactcgg 285
| |||||| || | |||||||| | ||||||||||| |||||||||||||||||||| |
Sbjct: 1463279 agaggcaggtgctgagccacctgagagataagtatgtgttcatcacgggctgtgactctg 1463220
Query: 286 gctttgggaacctgctggcgaggcagctggatgtgaggggcttgagggtcctggctgcat 345
|||| ||||| |||||||| || |||||||||| | |||||| |||| ||||||||||
Sbjct: 1463219 gcttcgggaaactgctggccagacagctggatgcacgaggcttgcgggtgctggctgcat 1463160
Query: 346 gtctgacggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacgg 405
||||||||||| | || ||| ||||||||||| ||||| |||||||||||||||||||
Sbjct: 1463159 gtctgacggagaaaggagccgagcagctgaggggccagacttcagacaggctggagacgg 1463100
Query: 406 tgctcttggacgtgaccaagacagagagcattgctgcggccacccagtgggtgaaggag 464
|| | |||| || ||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct: 1463099 tgaccctggatgttaccaagacagagagcgttgctgcagccgcccagtgggtgaaggag 1463041
Score = 208 bits (105), Expect = 5e-51
Identities = 150/165 (90%)
Strand = Plus / Plus
Query: 567 ctcaaagtgaacctcattggtgtgacagaggtgaccttgagcatgcttcccttggtgaag 626
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
Sbjct: 1285964 ctcaaagtgaacctcattggtgtgatccaggtgaccttgagcatgcttcctttggtgagg 1286023
Query: 627 aaagcacaggggagaattgtcaatgtctccagcattctgggaagagttgctttctttgga 686
| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1286024 agagcacggggaagaattgtcaatgtctccagcattctgggaagagttgctttctttgta 1286083
Query: 687 gcagtctactctagctccaagcatggagtggaagccttttcagat 731
| || ||||| | ||||||| |||||||||||||||||||||||
Sbjct: 1286084 ggaggctactgtgtctccaagtatggagtggaagccttttcagat 1286128
Score = 178 bits (90), Expect = 4e-42
Identities = 126/138 (91%)
Strand = Plus / Plus
Query: 922 aagggctgtctagttgtagcacaaacctgaacctggtcacggactgcatggaacacgctc 981
||||||||| | ||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 1291047 aagggctgttgaattgtagcacaaacctgaacctggtcactgactgcatggaacatgctc 1291106
Query: 982 tgacatctgtgcatccccgcactcggtactcagctggctgggatgctcaatttttcttca 1041
||||||| |||||||| || ||||| || |||||||||||||||||| ||||||||||||
Sbjct: 1291107 tgacatcggtgcatccgcgaactcgatattcagctggctgggatgctaaatttttcttca 1291166
Query: 1042 tccctctgtcttatttac 1059
||||||| ||||||||||
Sbjct: 1291167 tccctctatcttatttac 1291184
Score = 131 bits (66), Expect = 9e-28
Identities = 224/276 (81%), Gaps = 3/276 (1%)
Strand = Plus / Minus
Query: 188 cctcgtgggcctgtactacctccttcgctggtaccgggaaaggcagatggttagccacct 247
||||||||||||||||||||| || |||||||| |||| || ||| |||| |||| ||
Sbjct: 1342718 cctcgtgggcctgtactaccttctgcgctggtagtgggagagacaggtggtgagcctccc 1342659
Query: 248 tggggataagtatgtcttcatcacgggctgtgactcgggctttgggaacctgctggcgag 307
| | ||||| | |||||||| |||||||||||||||||| ||||| |||||||| ||
Sbjct: 1342658 ttgagataactg---cttcatcatgggctgtgactcgggcttcgggaatctgctggcaag 1342602
Query: 308 gcagctggatgtgaggggcttgagggtcctggctgcatgtctgacggagcagggggccca 367
||||||||| | |||||||||| |||||| ||||||| |||| ||| ||| |
Sbjct: 1342601 acagctggatacgcaaagcttgagggtgctggctatgtgtctgatggagaaggaggcaga 1342542
Query: 368 gcagctgaggaagcagacgtcagacaggctggagacggtgctcttggacgtgaccaagac 427
|||||||||| ||||| ||||||||||||||||||||| | ||||| | ||||||||
Sbjct: 1342541 gcagctgaggggccagacttcagacaggctggagacggtgaccctggacatcaccaagac 1342482
Query: 428 agagagcattgctgcggccacccagtgggtgaagga 463
||||| || ||||| ||||||||| | ||||||||
Sbjct: 1342481 agagaatatcgctgcagccacccagggagtgaagga 1342446
Score = 125 bits (63), Expect = 5e-26
Identities = 123/143 (86%)
Strand = Plus / Minus
Query: 339 gctgcatgtctgacggagcagggggcccagcagctgaggaagcagacgtcagacaggctg 398
||||||||| ||| ||| ||||| || ||||||||||| ||||| ||||||||||||
Sbjct: 1447192 gctgcatgtaggacagagaaggggaccaagcagctgaggggccagacttcagacaggctg 1447133
Query: 399 gagacggtgctcttggacgtgaccaagacagagagcattgctgcggccacccagtgggtg 458
||||||||| | ||||| | ||||||||||||||||||||||| || |||||||||||
Sbjct: 1447132 gagacggtgaccatggacatcaccaagacagagagcattgctgcagctgcccagtgggtg 1447073
Query: 459 aaggagcgtgtcggggacagagg 481
|||||| |||| |||||||||||
Sbjct: 1447072 aaggagtgtgtgggggacagagg 1447050
Score = 125 bits (63), Expect = 5e-26
Identities = 123/143 (86%)
Strand = Plus / Minus
Query: 339 gctgcatgtctgacggagcagggggcccagcagctgaggaagcagacgtcagacaggctg 398
||||||||| ||| ||| ||||| || ||||||||||| ||||| ||||||||||||
Sbjct: 1491669 gctgcatgtaggacagagaaggggaccaagcagctgaggggccagacttcagacaggctg 1491610
Query: 399 gagacggtgctcttggacgtgaccaagacagagagcattgctgcggccacccagtgggtg 458
||||||||| | ||||| | ||||||||||||||||||||||| || |||||||||||
Sbjct: 1491609 gagacggtgaccatggacatcaccaagacagagagcattgctgcagctgcccagtgggtg 1491550
Query: 459 aaggagcgtgtcggggacagagg 481
|||||| |||| |||||||||||
Sbjct: 1491549 aaggagtgtgtgggggacagagg 1491527
Score = 113 bits (57), Expect = 2e-22
Identities = 135/161 (83%)
Strand = Plus / Plus
Query: 742 gtgagcttcagcattttggggtgaaagtcagcatagttgaacctggttacttcagaacag 801
||||| |||| ||||||||||||||| ||||||||||||||||||| ||||||||||| |
Sbjct: 1288759 gtgagattcaacattttggggtgaaaatcagcatagttgaacctggctacttcagaacgg 1288818
Query: 802 gaatgacagatgtgcagaagtcctcagaggcaatgaagcaagtctggaaagaagtccctg 861
|||||||| | || |||||| |||| |||||||||| |||||||||| |||
Sbjct: 1288819 gaatgacaaacatgacacagtccttagagcgaatgaagcaaagttggaaagaagccccca 1288878
Query: 862 ctcatattaaggacacctatggacagaagttttttgatgcc 902
||||||||||| |||||||||||| ||| ||||||||||
Sbjct: 1288879 agcatattaaggagacctatggacagcagtattttgatgcc 1288919
Score = 67.9 bits (34), Expect = 1e-08
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 255 aagtatgtcttcatcacgggctgtgactcgggctttgggaacctgctggc 304
||||| ||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 1440061 aagtacgtcttcatcacaggctgtgactctggcttcgggaacctgctggc 1440012
Score = 52.0 bits (26), Expect = 6e-04
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 260 tgtcttcatcacgggctgtgactcgggctttggg 293
|||||||||||| ||||||||||| |||||||||
Sbjct: 176627 tgtcttcatcaccggctgtgactcaggctttggg 176660
Score = 48.1 bits (24), Expect = 0.010
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 996 ccccgcactcggtactcagctggctgggatgc 1027
||||| ||||| ||||||||||||||||||||
Sbjct: 1458029 ccccgtactcgctactcagctggctgggatgc 1457998
Score = 46.1 bits (23), Expect = 0.039
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 166 ccatgtggctgtacctggctgtcctcgtgggcctgtactacct 208
|||||||||| ||||||| |||||| |||||||||||||||
Sbjct: 1447359 ccatgtggctctacctggtggtcctccagggcctgtactacct 1447317
Score = 40.1 bits (20), Expect = 2.4
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 479 aggactctggggtctggtcaacaatgcaggca 510
|||||||||| | ||||| |||||||||||||
Sbjct: 1285876 aggactctggcgactggtgaacaatgcaggca 1285907
>gi|22044651|ref|NT_005332.10|Hs2_5489 Homo sapiens chromosome 2 reference
genomic contig
Length = 9107791
Score = 44.1 bits (22), Expect = 0.16
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 609 atgcttcccttggtgaagaaagcacaggggagaattgtcaatgtctccag 658
|||||||| ||||| |||||||| || |||||| || | |||||||||||
Sbjct: 1990884 atgcttcctttggtcaagaaagctcaagggagagttattaatgtctccag 1990933
>gi|22058028|ref|NT_007299.10|Hs6_7456 Homo sapiens chromosome 6 reference
genomic contig
Length = 12331746
Score = 40.1 bits (20), Expect = 2.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 723 ttttcagatgtcctgagatg 742
||||||||||||||||||||
Sbjct: 5874436 ttttcagatgtcctgagatg 5874417
>gi|22051319|ref|NT_011145.12|Hs19_11302 Homo sapiens chromosome 19
reference genomic contig
Length = 1975237
Score = 40.1 bits (20), Expect = 2.4
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 472 gggacagaggactctggggtctgg 495
|||||||||| |||||||||||||
Sbjct: 503303 gggacagaggcctctggggtctgg 503280
>gi|22057507|ref|NT_030828.6|Hs15_31084 Homo sapiens chromosome 15 reference
genomic contig
Length = 6318192
Score = 40.1 bits (20), Expect = 2.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 155 aggcccccataccatgtggc 174
||||||||||||||||||||
Sbjct: 3341627 aggcccccataccatgtggc 3341646
Score = 38.2 bits (19), Expect = 9.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 273 ggctgtgactcgggctttg 291
|||||||||||||||||||
Sbjct: 3392709 ggctgtgactcgggctttg 3392727
>gi|22050229|ref|NT_026437.8|Hs14_26604 Homo sapiens chromosome 14 reference
genomic contig
Length = 39365623
Score = 40.1 bits (20), Expect = 2.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 845 ctggaaagaagtccctgctc 864
||||||||||||||||||||
Sbjct: 34599108 ctggaaagaagtccctgctc 34599089
>gi|22048717|ref|NT_025892.9|Hs14_26048 Homo sapiens chromosome 14 reference
genomic contig
Length = 46538979
Score = 40.1 bits (20), Expect = 2.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 100 ttaaatcagaagtgtttgaa 119
||||||||||||||||||||
Sbjct: 3274555 ttaaatcagaagtgtttgaa 3274536
Score = 38.2 bits (19), Expect = 9.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 57 tttctaatcctttggagaa 75
|||||||||||||||||||
Sbjct: 45971071 tttctaatcctttggagaa 45971089
Score = 38.2 bits (19), Expect = 9.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 930 tctagttgtagcacaaacctgaa 952
||||||||||| |||||||||||
Sbjct: 34624096 tctagttgtaggacaaacctgaa 34624118
Score = 38.2 bits (19), Expect = 9.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 592 cagaggtgaccttgagcat 610
|||||||||||||||||||
Sbjct: 36666896 cagaggtgaccttgagcat 36666914
>gi|22061219|ref|NT_017854.12|Hs11_18010 Homo sapiens chromosome 11
reference genomic contig
Length = 2171613
Score = 40.1 bits (20), Expect = 2.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 594 gaggtgaccttgagcatgct 613
||||||||||||||||||||
Sbjct: 243502 gaggtgaccttgagcatgct 243521
>gi|22060245|ref|NT_035616.1|HsX_35778 Homo sapiens chromosome X reference
genomic contig
Length = 1038066
Score = 38.2 bits (19), Expect = 9.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 532 ctgagtggctgaagactga 550
|||||||||||||||||||
Sbjct: 810559 ctgagtggctgaagactga 810541
>gi|22059057|ref|NT_025323.5|HsX_25479 Homo sapiens chromosome X reference
genomic contig
Length = 953005
Score = 38.2 bits (19), Expect = 9.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 824 ctcagaggcaatgaagcaa 842
|||||||||||||||||||
Sbjct: 165737 ctcagaggcaatgaagcaa 165719
>gi|22059011|ref|NT_025319.10|HsX_25475 Homo sapiens chromosome X reference
genomic contig
Length = 3020093
Score = 38.2 bits (19), Expect = 9.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 471 ggggacagaggactctggg 489
|||||||||||||||||||
Sbjct: 1067959 ggggacagaggactctggg 1067941
>gi|22056420|ref|NT_011669.10|HsX_11826 Homo sapiens chromosome X
reference genomic contig
Length = 4827044
Score = 38.2 bits (19), Expect = 9.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 108 gaagtgtttgaaatctgacatct 130
||||||||||||||||| |||||
Sbjct: 839310 gaagtgtttgaaatctgtcatct 839332
>gi|22045479|ref|NT_023935.12|Hs9_24091 Homo sapiens chromosome 9 reference
genomic contig
Length = 9717621
Score = 38.2 bits (19), Expect = 9.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1034 tttcttcatccctctgtcttatt 1056
||||||||| |||||||||||||
Sbjct: 1128174 tttcttcatacctctgtcttatt 1128196
>gi|22045221|ref|NT_017568.10|Hs9_17724 Homo sapiens chromosome 9 reference
genomic contig
Length = 16078776
Score = 38.2 bits (19), Expect = 9.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 717 gaagccttttcagatgtcctgag 739
|||||||||||||| ||||||||
Sbjct: 6620361 gaagccttttcagaggtcctgag 6620383
>gi|22050628|ref|NT_007933.10|Hs7_8090 Homo sapiens chromosome 7 reference
genomic contig
Length = 64386157
Score = 38.2 bits (19), Expect = 9.6
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 851 agaagtccctgctcatattaaggacac 877
||||||| ||| |||||||||||||||
Sbjct: 7327556 agaagtcactgatcatattaaggacac 7327582
>gi|22061075|ref|NT_007592.10|Hs6_7749 Homo sapiens chromosome 6 reference
genomic contig
Length = 48753116
Score = 38.2 bits (19), Expect = 9.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 167 catgtggctgtacctggct 185
|||||||||||||||||||
Sbjct: 11041858 catgtggctgtacctggct 11041840
>gi|22053317|ref|NT_019424.10|Hs6_19580 Homo sapiens chromosome 6 reference
genomic contig
Length = 7107542
Score = 38.2 bits (19), Expect = 9.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 224 ggaaaggcagatggttagc 242
|||||||||||||||||||
Sbjct: 3915788 ggaaaggcagatggttagc 3915770
>gi|22052191|ref|NT_006713.10|Hs5_6870 Homo sapiens chromosome 5 reference
genomic contig
Length = 13295383
Score = 38.2 bits (19), Expect = 9.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 365 ccagcagctgaggaagcag 383
|||||||||||||||||||
Sbjct: 9191106 ccagcagctgaggaagcag 9191088
>gi|22051331|ref|NT_006576.10|Hs5_6733 Homo sapiens chromosome 5 reference
genomic contig
Length = 7438872
Score = 38.2 bits (19), Expect = 9.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 700 gctccaagcatggagtggaagcc 722
||||||||| |||||||||||||
Sbjct: 2375734 gctccaagcctggagtggaagcc 2375756
>gi|22049321|ref|NT_034773.1|Hs5_34935 Homo sapiens chromosome 5 reference
genomic contig
Length = 2750455
Score = 38.2 bits (19), Expect = 9.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 374 gaggaagcagacgtcagacaggc 396
||||||| |||||||||||||||
Sbjct: 1184122 gaggaagaagacgtcagacaggc 1184144
Database: Homo Sapiens Gene(masked sequence)
Posted date: Nov 13, 2002 9:59 PM
Number of letters in database: 2,826,392,627
Number of sequences in database: 1395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 1059
length of database: 2,826,392,627
effective HSP length: 21
effective length of query: 1038
effective length of database: 2,826,363,332
effective search space: 2933765138616
effective search space used: 2933765138616
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)