Search to ncbiHGDS database
Query= 20030531C-000394 (20030531C-000394) 20030531C-000394
(1233 letters)
Database: Homo Sapiens Gene(masked sequence)
1395 sequences; 2,826,392,627 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|22061075|ref|NT_007592.10|Hs6_7749 Homo sapiens chromosome 6... 831 0.0
Alignment gi|22044506|ref|NT_006344.12|Hs4_6501 Homo sapiens chromosome 4... 220 1e-54
Alignment gi|22045785|ref|NT_023974.12|Hs9_24130 Homo sapiens chromosome ... 42 0.72
Alignment gi|22045221|ref|NT_017568.10|Hs9_17724 Homo sapiens chromosome ... 42 0.72
Alignment gi|22047071|ref|NT_023083.6|Hs5_23239 Homo sapiens chromosome 5... 42 0.72
Alignment gi|22046819|ref|NT_004982.12|Hs1_5139 Homo sapiens chromosome 1... 42 0.72
Alignment gi|22043234|ref|NT_032977.2|Hs1_33153 Homo sapiens chromosome 1... 42 0.72
Alignment gi|22047115|ref|NT_008470.12|Hs9_8627 Homo sapiens chromosome 9... 40 2.8
Alignment gi|22045318|ref|NT_023929.12|Hs9_24085 Homo sapiens chromosome ... 40 2.8
Alignment gi|22047859|ref|NT_007914.10|Hs7_8071 Homo sapiens chromosome 7... 40 2.8
Alignment gi|22058028|ref|NT_007299.10|Hs6_7456 Homo sapiens chromosome 6... 40 2.8
Alignment gi|22056350|ref|NT_033944.2|Hs6_34099 Homo sapiens chromosome 6... 40 2.8
Alignment gi|22043520|ref|NT_005078.10|Hs2_5235 Homo sapiens chromosome 2... 40 2.8
Alignment gi|22059679|ref|NT_011044.10|Hs18_11201 Homo sapiens chromosome... 40 2.8
Alignment gi|22069743|ref|NT_033288.2|Hs16_33464 Homo sapiens chromosome ... 40 2.8
Alignment gi|22067833|ref|NT_010498.10|Hs16_10655 Homo sapiens chromosome... 40 2.8
Alignment gi|22041904|ref|NT_029218.8|Hs1_29377 Homo sapiens chromosome 1... 40 2.8
Alignment gi|22041139|ref|NT_021905.12|Hs1_22061 Homo sapiens chromosome ... 40 2.8
>gi|22061075|ref|NT_007592.10|Hs6_7749 Homo sapiens chromosome 6 reference
genomic contig
Length = 48753116
Score = 831 bits (419), Expect = 0.0
Identities = 973/1155 (84%), Gaps = 12/1155 (1%)
Strand = Plus / Plus
Query: 79 cgctgcaaacatgacgaagggccttgttttaggaatctacagcaaagaaaaagaagatga 138
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 27444407 cgctgcagacatgacgaagggccttgttttaggaatctattccaaagaaaaagaagatga 27444466
Query: 139 tgcaccccagtttacaagtgcgggagaaaattttgataaattggtgtctggaaagctgag 198
|| || ||||| |||||||| ||||| ||| ||||||||||| | |||||||||||||
Sbjct: 27444467 tgtgccacagttcacaagtgcaggagagaatcttgataaattgatagctggaaagctgag 27444526
Query: 199 agaaattttgaacatatccggaccacccctgaaggcaggcaaaacccgaaccttttacgg 258
||| | |||||||||||| |||||||| |||||||||||||| || |||| |||||| ||
Sbjct: 27444527 agagactttgaacatatctggaccacctctgaaggcaggcaagactcgaaacttttatgg 27444586
Query: 259 tctgcatgaggacttctccagcgtggtggtggttggcctcggcaaaaagggagccggagt 318
||||||| |||||||| ||||||||||| | ||||||||||||||||||| |||| || |
Sbjct: 27444587 tctgcatcaggacttccccagcgtggtgctagttggcctcggcaaaaaggcagccagaat 27444646
Query: 319 tgatgaccaggagaactggcacgaaggcaaagaaaacatcagagccgctgtcgcagccgg 378
|| || ||||| |||||||| ||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 27444647 cgacgaacaggaaaactggcaggaaggcaaagaaaacatcagagctgctgttgcagcagg 27444706
Query: 379 gtgcagacagattcaggacctggagatcccgtcggtggaggtggacccctgcggagacgc 438
||||| |||||||| ||||||||| || | || ||||||||||| ||||| |||| ||
Sbjct: 27444707 atgcaggcagattcaagacctggagctctcttccgtggaggtggatccctgtagagatgc 27444766
Query: 439 ccaggcggccgcggaaggagcggtgctcgggctctacgagtacgacgagctgaagcagaa 498
||||| || | ||| || |||||||| || ||||| || ||||| || || ||||| ||
Sbjct: 27444767 tcaggctgctgaggagggcgcggtgcttggtctctatgaatacgatgacctaaagcaaaa 27444826
Query: 499 aaagaaggtggtcgtgtcggccaagctccatggaagtggggatcaggaggcctggcagag 558
||||||| ||| |||||| |||||| |||||| |||||||||||||||||||||||
Sbjct: 27444827 aaagaagatggctatgtcggtgaagctctatggaactggggatcaggaggcctggcagaa 27444886
Query: 559 gggcgtcctctttgcttctgggcagaacctggcacgccacctgatggagacgcctgccaa 618
|| ||||| |||||||||||||||||| ||||| ||||||||||||| ||||
Sbjct: 27444887 aggagtcctgtttgcttctgggcagaacttggca-------tgatggagacgccagccag 27444939
Query: 619 tgagatgacgccaaccagatttgctgaagttattgagaagaatctcaaaagtgccagcag 678
||||||| ||||||||||||||| ||| |||||||||||||||||||||| || || ||
Sbjct: 27444940 cgagatgatgccaaccagatttgccgaaattattgagaagaatctcaaaagcgctagtag 27444999
Query: 679 taaaacagacgtccacatcagacccaagtcttggattgaggaacaggaaatgggatcatt 738
| |||| || | || |||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 27445000 t-aaaccgagtttcatatcagacccaggtcttggattgaggaacaggcaatgggatcatt 27445058
Query: 739 cctgagtgtggccaaagggtccgaagagcctccagtcttcctggaaattcactacaaagg 798
||| |||||||||||||| || || ||||| |||||||| ||||||||||||||| |||
Sbjct: 27445059 cctcagtgtggccaaaggatctgacgagccctcagtcttcttggaaattcactacatagg 27445118
Query: 799 cagcccagacgcaagtgacccacccctggtgtttgtcgggaagggaattacctttgacag 858
|||||| | ||| | |||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 27445119 cagccccaatgcagacaaaccacccct--tgtttgttgggaaaggaattacctttgacag 27445176
Query: 859 tggcggcatctctatcaaggcgtctgcgaacatggacctcatgagggcggacatgggcgg 918
||| || ||||| |||||||| ||||| || ||||||||||||||||| |||||||| ||
Sbjct: 27445177 tggtggtatctccatcaaggcttctgcaaatatggacctcatgagggccgacatgggagg 27445236
Query: 919 agctgccaccatctgttccaccatcgtgtctgctgccaagctcgacctgcccatcaacct 978
|||| | || || || || |||| ||||||||||| || ||| ||||||| || |
Sbjct: 27445237 agctacaactatatgctcagccattgtgtctgctgcaaatctcagtttgcccattaatat 27445296
Query: 979 cgtcggtttggcccctctttgtgaaaacatgcccagcgggaaggccaacaagcctgggga 1038
| ||| ||||||||| |||||||||||||||||||| ||||||||||||| |||||
Sbjct: 27445297 tataggtctggcccctc--tgtgaaaacatgcccagcggcaaggccaacaagctggggga 27445354
Query: 1039 tgtcgttagagccaagaacgggaagaccatccaggtggacaacaccgacgccgagggcag 1098
||| |||||||||| |||| |||||||||||||||| | ||||| || || ||||| ||
Sbjct: 27445355 tgttgttagagccaggaacaggaagaccatccaggttggtaacactgatgctgaggggag 27445414
Query: 1099 actcatcctggccgacgcgctctgctacgcgcacacttttaacccaaaggtcatcatcaa 1158
||||| ||||| || |||||||| |||| |||||| |||||||| ||||||||| ||||
Sbjct: 27445415 gctcatactggctgatgcgctctgttacgtgcacacatttaacccgaaggtcatcctcaa 27445474
Query: 1159 tgccgccaccctgacaggtgccatggatatagctttgggatccggtgccactggggtctt 1218
|||| ||||| | ||||||| ||| ||| |||||||||| || |||||||||||||||||
Sbjct: 27445475 tgccaccaccttaacaggtgtcatagatgtagctttggggtcaggtgccactggggtctt 27445534
Query: 1219 tacccattcttcctg 1233
|||| |||| |||||
Sbjct: 27445535 taccaattcatcctg 27445549
>gi|22044506|ref|NT_006344.12|Hs4_6501 Homo sapiens chromosome 4 reference
genomic contig
Length = 7839908
Score = 220 bits (111), Expect = 1e-54
Identities = 153/167 (91%)
Strand = Plus / Plus
Query: 533 agtggggatcaggaggcctggcagaggggcgtcctctttgcttctgggcagaacctggca 592
||||||||||||||||||||||||| || ||||| |||||||||||||||||| |||||
Sbjct: 4059440 agtggggatcaggaggcctggcagaaaggagtcctgtttgcttctgggcagaacttggca 4059499
Query: 593 cgccacctgatggagacgcctgccaatgagatgacgccaaccagatttgctgaagttatt 652
||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 4059500 cgccaattgatggagacgccagccaatgagatgacgccaaccagatttgctgaaattatt 4059559
Query: 653 gagaagaatctcaaaagtgccagcagtaaaacagacgtccacatcag 699
|||||||||||||||||||| || |||||||| || ||||| |||||
Sbjct: 4059560 gagaagaatctcaaaagtgctagtagtaaaaccgaggtccatatcag 4059606
Score = 200 bits (101), Expect = 1e-48
Identities = 146/161 (90%)
Strand = Plus / Plus
Query: 698 agacccaagtcttggattgaggaacaggaaatgggatcattcctgagtgtggccaaaggg 757
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 4063287 agacccaagtcttggattgaggaacaggcaatgggatcattcctcagtgtggccaaagga 4063346
Query: 758 tccgaagagcctccagtcttcctggaaattcactacaaaggcagcccagacgcaagtgac 817
|| || ||||| ||||||||| ||||||||||||||||||||||||| | |||| ||
Sbjct: 4063347 tctgacgagcccccagtcttcttggaaattcactacaaaggcagccccaatgcaaacgaa 4063406
Query: 818 ccacccctggtgtttgtcgggaagggaattacctttgacag 858
||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 4063407 ccacccctggtgtttgttgggaaaggaattacctttgacag 4063447
Score = 135 bits (68), Expect = 6e-29
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 987 tggcccctctttgtgaaaacatgcccagcgggaaggccaacaagcctggggatgtcgtta 1046
||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||
Sbjct: 4071519 tggcccctctttgtgaaaatatgcccagcggcaaggccaacaagccgggggatgttgtta 4071578
Query: 1047 gagccaagaacgggaagaccatccaggt 1074
||||||| ||||||||||||||||||||
Sbjct: 4071579 gagccaaaaacgggaagaccatccaggt 4071606
Score = 123 bits (62), Expect = 2e-25
Identities = 104/118 (88%)
Strand = Plus / Plus
Query: 96 agggccttgttttaggaatctacagcaaagaaaaagaagatgatgcaccccagtttacaa 155
|||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||
Sbjct: 4054292 agggccttgttttaggaatctattccaaagaaaaagaagatgatgtgccacagttcacaa 4054351
Query: 156 gtgcgggagaaaattttgataaattggtgtctggaaagctgagagaaattttgaacat 213
|||| ||||| ||||||||||||||| | |||||||||||||||| | |||||||||
Sbjct: 4054352 gtgcaggagagaattttgataaattgttagctggaaagctgagagagactttgaacat 4054409
Score = 123 bits (62), Expect = 2e-25
Identities = 134/158 (84%)
Strand = Plus / Plus
Query: 377 gggtgcagacagattcaggacctggagatcccgtcggtggaggtggacccctgcggagac 436
|||||||| |||||||| ||||||||| || |||| ||||||||||| ||||| ||||||
Sbjct: 4057955 gggtgcaggcagattcaagacctggagctctcgtctgtggaggtggatccctgtggagac 4058014
Query: 437 gcccaggcggccgcggaaggagcggtgctcgggctctacgagtacgacgagctgaagcag 496
|| ||||| || ||||| ||||||||||| || ||||| || ||||| || || |||||
Sbjct: 4058015 gctcaggctgctgcggagggagcggtgcttggtctctatgaatacgatgacctaaagcaa 4058074
Query: 497 aaaaagaaggtggtcgtgtcggccaagctccatggaag 534
||||||||| ||| |||||||| |||||| |||||||
Sbjct: 4058075 aaaaagaagatggctgtgtcggcaaagctctatggaag 4058112
Score = 111 bits (56), Expect = 9e-22
Identities = 95/108 (87%)
Strand = Plus / Plus
Query: 267 aggacttctccagcgtggtggtggttggcctcggcaaaaagggagccggagttgatgacc 326
|||||||| ||||||||||| | ||||||||||||||||||| ||| ||| | || || |
Sbjct: 4056756 aggacttccccagcgtggtgctagttggcctcggcaaaaaggcagctggaatcgacgaac 4056815
Query: 327 aggagaactggcacgaaggcaaagaaaacatcagagccgctgtcgcag 374
|||| |||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct: 4056816 aggaaaactggcatgaaggcaaagaaaacatcagagctgctgttgcag 4056863
Score = 91.7 bits (46), Expect = 9e-16
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 1172 acaggtgccatggatatagctttgggatccggtgccactggggtctttacccattcttcc 1231
||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct: 4079054 acaggtgccatggatgtagctttgggatcaggtgccactggggtctttaccaattcatcc 4079113
Query: 1232 tg 1233
||
Sbjct: 4079114 tg 4079115
Score = 87.7 bits (44), Expect = 1e-14
Identities = 89/104 (85%)
Strand = Plus / Plus
Query: 857 agtggcggcatctctatcaaggcgtctgcgaacatggacctcatgagggcggacatgggc 916
||||| || ||||| |||||||| ||||| || ||||||||||||||||| ||||||||
Sbjct: 4069878 agtggtggtatctccatcaaggcttctgcaaatatggacctcatgagggctgacatggga 4069937
Query: 917 ggagctgccaccatctgttccaccatcgtgtctgctgccaagct 960
|||||||| || || || || |||||||||||||||| |||||
Sbjct: 4069938 ggagctgcaactatatgctcagccatcgtgtctgctgcaaagct 4069981
Score = 79.8 bits (40), Expect = 3e-12
Identities = 91/108 (84%)
Strand = Plus / Plus
Query: 1070 caggtggacaacaccgacgccgagggcagactcatcctggccgacgcgctctgctacgcg 1129
||||| || ||||| || || ||||| || ||||| ||||| || |||||||| |||||
Sbjct: 4072923 caggttgataacactgatgctgaggggaggctcatactggctgatgcgctctgttacgca 4072982
Query: 1130 cacacttttaacccaaaggtcatcatcaatgccgccaccctgacaggt 1177
||||| |||||||| ||||||||| |||||||||||||| | ||||||
Sbjct: 4072983 cacacgtttaacccgaaggtcatcctcaatgccgccaccttaacaggt 4073030
Score = 56.0 bits (28), Expect = 5e-05
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 218 ggaccacccctgaaggcaggcaaaacccgaaccttttacggtctgcat 265
|||||||| ||||||||||| || || ||||||||||| |||||||||
Sbjct: 4056234 ggaccacctctgaaggcagggaagactcgaaccttttatggtctgcat 4056281
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1 cttgctgcctcttccggctgctgcgcgagtcgccgtccgac 41
||||||||||||||||||||| | |||||| | ||||||||
Sbjct: 4051941 cttgctgcctcttccggctgcggggcgagtagtcgtccgac 4051981
>gi|22045785|ref|NT_023974.12|Hs9_24130 Homo sapiens chromosome 9
reference genomic contig
Length = 20138537
Score = 42.1 bits (21), Expect = 0.72
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 538 ggatcaggaggcctggcagaggggc 562
|||| ||||||||||||||||||||
Sbjct: 422623 ggataaggaggcctggcagaggggc 422647
>gi|22045221|ref|NT_017568.10|Hs9_17724 Homo sapiens chromosome 9 reference
genomic contig
Length = 16078776
Score = 42.1 bits (21), Expect = 0.72
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 534 gtggggatcaggaggcctggc 554
|||||||||||||||||||||
Sbjct: 6016284 gtggggatcaggaggcctggc 6016264
>gi|22047071|ref|NT_023083.6|Hs5_23239 Homo sapiens chromosome 5 reference
genomic contig
Length = 365356
Score = 42.1 bits (21), Expect = 0.72
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 105 ttttaggaatctacagcaaagaaaa 129
|||||||||||||||||| ||||||
Sbjct: 233101 ttttaggaatctacagcacagaaaa 233125
>gi|22046819|ref|NT_004982.12|Hs1_5139 Homo sapiens chromosome 1 reference
genomic contig
Length = 2733743
Score = 42.1 bits (21), Expect = 0.72
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 533 agtggggatcaggaggcctgg 553
|||||||||||||||||||||
Sbjct: 2018778 agtggggatcaggaggcctgg 2018758
>gi|22043234|ref|NT_032977.2|Hs1_33153 Homo sapiens chromosome 1 reference
genomic contig
Length = 4568944
Score = 42.1 bits (21), Expect = 0.72
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 162 gagaaaattttgataaattgg 182
|||||||||||||||||||||
Sbjct: 1001397 gagaaaattttgataaattgg 1001377
>gi|22047115|ref|NT_008470.12|Hs9_8627 Homo sapiens chromosome 9 reference
genomic contig
Length = 9268166
Score = 40.1 bits (20), Expect = 2.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 164 gaaaattttgataaattggtgtct 187
|||||||||||||| |||||||||
Sbjct: 4664721 gaaaattttgataatttggtgtct 4664698
>gi|22045318|ref|NT_023929.12|Hs9_24085 Homo sapiens chromosome 9
reference genomic contig
Length = 563316
Score = 40.1 bits (20), Expect = 2.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 689 gtccacatcagacccaagtc 708
||||||||||||||||||||
Sbjct: 491638 gtccacatcagacccaagtc 491657
>gi|22047859|ref|NT_007914.10|Hs7_8071 Homo sapiens chromosome 7 reference
genomic contig
Length = 14804752
Score = 40.1 bits (20), Expect = 2.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 185 tctggaaagctgagagaaat 204
||||||||||||||||||||
Sbjct: 2853734 tctggaaagctgagagaaat 2853715
>gi|22058028|ref|NT_007299.10|Hs6_7456 Homo sapiens chromosome 6 reference
genomic contig
Length = 12331746
Score = 40.1 bits (20), Expect = 2.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1138 taacccaaaggtcatcatcaatgc 1161
||||||||||||||||| ||||||
Sbjct: 1609727 taacccaaaggtcatcaccaatgc 1609704
>gi|22056350|ref|NT_033944.2|Hs6_34099 Homo sapiens chromosome 6 reference
genomic contig
Length = 19894959
Score = 40.1 bits (20), Expect = 2.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 agaaaattttgataaattgg 182
||||||||||||||||||||
Sbjct: 10273102 agaaaattttgataaattgg 10273121
>gi|22043520|ref|NT_005078.10|Hs2_5235 Homo sapiens chromosome 2
reference genomic contig
Length = 2555680
Score = 40.1 bits (20), Expect = 2.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 714 ttgaggaacaggaaatggga 733
||||||||||||||||||||
Sbjct: 4382 ttgaggaacaggaaatggga 4363
>gi|22059679|ref|NT_011044.10|Hs18_11201 Homo sapiens chromosome 18
reference genomic contig
Length = 6356383
Score = 40.1 bits (20), Expect = 2.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 485 gagctgaagcagaaaaagaa 504
||||||||||||||||||||
Sbjct: 5255190 gagctgaagcagaaaaagaa 5255209
>gi|22069743|ref|NT_033288.2|Hs16_33464 Homo sapiens chromosome 16
reference genomic contig
Length = 1587798
Score = 40.1 bits (20), Expect = 2.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 826 ggtgtttgtcgggaagggaa 845
||||||||||||||||||||
Sbjct: 662251 ggtgtttgtcgggaagggaa 662232
>gi|22067833|ref|NT_010498.10|Hs16_10655 Homo sapiens chromosome 16
reference genomic contig
Length = 5484103
Score = 40.1 bits (20), Expect = 2.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 110 ggaatctacagcaaagaaaa 129
||||||||||||||||||||
Sbjct: 4002429 ggaatctacagcaaagaaaa 4002448
>gi|22041904|ref|NT_029218.8|Hs1_29377 Homo sapiens chromosome 1 reference
genomic contig
Length = 851266
Score = 40.1 bits (20), Expect = 2.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 518 gccaagctccatggaagtgg 537
||||||||||||||||||||
Sbjct: 379175 gccaagctccatggaagtgg 379156
>gi|22041139|ref|NT_021905.12|Hs1_22061 Homo sapiens chromosome 1
reference genomic contig
Length = 2439946
Score = 40.1 bits (20), Expect = 2.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 163 agaaaattttgataaattgg 182
||||||||||||||||||||
Sbjct: 262022 agaaaattttgataaattgg 262003
Database: Homo Sapiens Gene(masked sequence)
Posted date: Nov 13, 2002 9:59 PM
Number of letters in database: 2,826,392,627
Number of sequences in database: 1395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 1233
length of database: 2,826,392,627
effective HSP length: 21
effective length of query: 1212
effective length of database: 2,826,363,332
effective search space: 3425552358384
effective search space used: 3425552358384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)