Search to ncbiHGDS database
Query= 20030531C-001026 (20030531C-001026) 20030531C-001026
(1391 letters)
Database: Homo Sapiens Gene(masked sequence)
1395 sequences; 2,826,392,627 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|22043501|ref|NT_006204.12|Hs4_6361 Homo sapiens chromosome 4... 301 5e-79
Alignment gi|22053706|ref|NT_008583.12|Hs10_8740 Homo sapiens chromosome ... 44 0.20
Alignment gi|22049462|ref|NT_008117.10|Hs8_8274 Homo sapiens chromosome 8... 42 0.81
Alignment gi|22043454|ref|NT_005058.10|Hs2_5215 Homo sapiens chromosome 2... 42 0.81
Alignment gi|22060431|ref|NT_035625.1|HsX_35787 Homo sapiens chromosome X... 40 3.2
Alignment gi|22047328|ref|NT_008580.10|Hs9_8737 Homo sapiens chromosome 9... 40 3.2
Alignment gi|22050628|ref|NT_007933.10|Hs7_8090 Homo sapiens chromosome 7... 40 3.2
Alignment gi|22053587|ref|NT_023451.10|Hs6_23607 Homo sapiens chromosome ... 40 3.2
Alignment gi|22063103|ref|NT_010704.10|Hs17_10861 Homo sapiens chromosome... 40 3.2
Alignment gi|22055475|ref|NT_010332.12|Hs15_10489 Homo sapiens chromosome... 40 3.2
Alignment gi|22062213|ref|NT_009781.12|Hs12_9938 Homo sapiens chromosome ... 40 3.2
Alignment gi|22043484|ref|NT_034383.1|Hs1_34545 Homo sapiens chromosome 1... 40 3.2
Alignment gi|22041985|ref|NT_029223.8|Hs1_29382 Homo sapiens chromosome 1... 40 3.2
>gi|22043501|ref|NT_006204.12|Hs4_6361 Homo sapiens chromosome 4 reference
genomic contig
Length = 8152527
Score = 301 bits (152), Expect = 5e-79
Identities = 264/300 (88%), Gaps = 6/300 (2%)
Strand = Plus / Plus
Query: 978 tgttcctcacgggcagcgaccggattcccatctacggcatggccagcctgcagattgtca 1037
||||||| || |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 2543514 tgttcctgacaggcagcgatcggattcccatctacggcatggccagtctgcagattgtca 2543573
Query: 1038 tccagtccacagccagcggggaggactacttgcctgtggcccacacgtgctacaaccttc 1097
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct: 2543574 tccagtccacagccagcggggaggagtacttgccggtggcccacacttgctacaaccttc 2543633
Query: 1098 tcgacctgcccaagtacagcagcaaagaggtcctgcgcgcccggctgacccaggcccttg 1157
| ||||| ||||||||||||||||||||| | ||| | ||||||||||||||||||||||
Sbjct: 2543634 ttgacctccccaagtacagcagcaaagagattctgagtgcccggctgacccaggcccttg 2543693
Query: 1158 acaactacgaggggttcagtctggcctgaggctccgcagcctgccccccgatttcccttc 1217
||||||| || ||||| ||| |||||||||||| | |||| || || ||||||||||
Sbjct: 2543694 acaactatgaagggtttagtttggcctgaggcttctcagcttg-tccagtatttcccttc 2543752
Query: 1218 cttcctcaccgtccacatcgaggcccataccatacagaaaatcatggggagtgagttcta 1277
||||||| |||||||| ||||| | ||||||||||||||||||||||| |||||
Sbjct: 2543753 gttcctcagtgtccacattgaggc-----ctatacagaaaatcatggggagtgatttcta 2543807
Score = 240 bits (121), Expect = 2e-60
Identities = 160/173 (92%)
Strand = Plus / Plus
Query: 56 caggtggcggtcaacggggccaacctgcagaatgtcttcatgcttctcaccctggagcct 115
|||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2514723 caggtggcagtcaatggagccaacctgcagaatgtcttcatgcttctcaccctggagcct 2514782
Query: 116 ctgctggccagaagccccttcctggtccttcacgtgcgcaggaacaaccttgttggggac 175
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 2514783 ctgctggccagaagccccttcctggtccttcacgttcgcaggaacaaccttgttggagat 2514842
Query: 176 gccctgcgagagctgagcatccattctgacatcgatctgaaaaaacctctcaa 228
||||| ||||||||||||| |||||||| || ||| ||||||| ||||||||
Sbjct: 2514843 gccctaagagagctgagcattcattctgatattgatttgaaaaagcctctcaa 2514895
Score = 236 bits (119), Expect = 3e-59
Identities = 170/187 (90%)
Strand = Plus / Plus
Query: 688 caggcaggagtttgtggatgcttatgtgaattacgtcttccaaatctccgttggcgagtg 747
||||||||| ||||||||||||||||||||||| |||||||||||||| ||| || ||
Sbjct: 2540857 caggcaggaatttgtggatgcttatgtgaattatgtcttccaaatctcagttcatgaatg 2540916
Query: 748 gtacacagctttctccagcggcttcctcaaggtgtgtggcggcaaagtgctggagctctt 807
||||||||| ||||| || |||||||| ||||||||||| |||||||| || ||||||||
Sbjct: 2540917 gtacacagccttctctagtggcttcctaaaggtgtgtggtggcaaagtacttgagctctt 2540976
Query: 808 ccagccttccgaactgagggccatgatggtggggaacagcaactacaactgggaggaact 867
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 2540977 ccagccttcagaactgagggctatgatggtggggaacagcaactacaactgggaagaact 2541036
Query: 868 ggaagag 874
|||||||
Sbjct: 2541037 ggaagag 2541043
Score = 157 bits (79), Expect = 2e-35
Identities = 127/143 (88%)
Strand = Plus / Plus
Query: 227 aaggtcatttttgatggcgaagaagcagtggatgccggtggtgtcacaaaggagttcttc 286
||||| || |||||||| |||||||||||||||||||||||||| |||||||| || ||
Sbjct: 2516852 aaggtaatctttgatggtgaagaagcagtggatgccggtggtgttacaaaggaatttttt 2516911
Query: 287 cttttactattaaaagagctgttgaatcccatctatggaatgtttacctactaccaggac 346
||||| || |||||||| || |||||||||||||||||||||||||||||||| || ||
Sbjct: 2516912 cttttgctgttaaaagaacttttgaatcccatctatggaatgtttacctactatcaagat 2516971
Query: 347 tccaatctcctgtggttttcaga 369
|| |||||| |||||||||||||
Sbjct: 2516972 tcaaatctcttgtggttttcaga 2516994
Score = 129 bits (65), Expect = 4e-27
Identities = 143/169 (84%)
Strand = Plus / Plus
Query: 373 gtgttttgtagagcacaactggtttcacttgattggcataacctgcggtctggccatcta 432
|||||||||||||||||||||||||||||||||||| |||||||| || || || |||||
Sbjct: 2517920 gtgttttgtagagcacaactggtttcacttgattggtataacctgtggactagctatcta 2517979
Query: 433 caactccacggtggtcgacctgcacttcccgctggcgctctataagaagctcctgaacgt 492
||||||||| |||||||| || |||||||| |||| ||||| |||||| | || || ||
Sbjct: 2517980 caactccactgtggtcgatctccacttcccattggctctctacaagaagttactcaatgt 2518039
Query: 493 gcagcccggcctggaagacctgaaggagctgtcccccgcggaaggaagg 541
|||| ||| |||||||| | |||||| |||| ||| | |||||||||
Sbjct: 2518040 aaagcctggcttggaagacttaaaggagttgtcacccactgaaggaagg 2518088
Score = 111 bits (56), Expect = 1e-21
Identities = 92/104 (88%)
Strand = Plus / Plus
Query: 873 agaccgccgtctacaagggtgactactcagccgcacatcccacggtgaaactgttttggg 932
|||| ||| |||||||||| || ||||| ||| |||||||||| || ||||| |||||||
Sbjct: 2541268 agactgccatctacaagggagattactcggccacacatcccactgtaaaactattttggg 2541327
Query: 933 aaacatttcacgagttccctttggaaaagaagaagaagtttctc 976
|||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 2541328 aaacatttcatgagtttccattggaaaagaagaagaagtttctc 2541371
Score = 103 bits (52), Expect = 3e-19
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 1 ctttgatgcccaagccaagaccaaaatgttacagactgatgctgaactgcagatgcaggt 60
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 2513128 ctttgatgcccaagccaagaccaaaatgttacagacagatgctgaactacagatgcaggt 2513187
Score = 89.7 bits (45), Expect = 4e-15
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 539 aggagtcttcaggagcttttagattaccccggggaagatatcgaggagaccttctgcctc 598
|||||||| || ||||||||||||||||||||||| ||| | |||||||| |||||||||
Sbjct: 2523496 aggagtctccaagagcttttagattaccccggggaggatgtggaggagactttctgcctc 2523555
Query: 599 aacttcacg 607
|||||||||
Sbjct: 2523556 aacttcacg 2523564
Score = 61.9 bits (31), Expect = 9e-07
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 617 gaaagctatggcgtcgttgagcagaagaagctgatacccgggggagacagagtcaccgtg 676
||||||||||| || |||| ||||||||||||||||| |||||||| | || || |||
Sbjct: 2523988 gaaagctatggagtgattgaacagaagaagctgatacctgggggagataatgtaactgtg 2524047
Query: 677 tgcaaggagaacagg 691
|||||||| ||||||
Sbjct: 2524048 tgcaaggataacagg 2524062
Score = 40.1 bits (20), Expect = 3.2
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 953 ttggaaaagaagaagaagtt 972
||||||||||||||||||||
Sbjct: 1441219 ttggaaaagaagaagaagtt 1441200
>gi|22053706|ref|NT_008583.12|Hs10_8740 Homo sapiens chromosome 10 reference
genomic contig
Length = 8042166
Score = 44.1 bits (22), Expect = 0.20
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 926 ttttgggaaacatttcacgagttccctttggaaaagaagaagaagtttct 975
||||||||| ||||||||| || || |||||||||||||| |||||||
Sbjct: 5784515 ttttgggaagtatttcacgaattaccattggaaaagaagaaacagtttct 5784466
Score = 42.1 bits (21), Expect = 0.81
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 689 aggcaggagtttgtggatgcttatgtgaattac 721
||||| |||||||| |||||||||||| |||||
Sbjct: 5792161 aggcaagagtttgtcgatgcttatgtggattac 5792129
>gi|22049462|ref|NT_008117.10|Hs8_8274 Homo sapiens chromosome 8 reference
genomic contig
Length = 559907
Score = 42.1 bits (21), Expect = 0.81
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 919 gaaactgttttgggaaacatt 939
|||||||||||||||||||||
Sbjct: 314460 gaaactgttttgggaaacatt 314440
>gi|22043454|ref|NT_005058.10|Hs2_5215 Homo sapiens chromosome 2 reference
genomic contig
Length = 10430487
Score = 42.1 bits (21), Expect = 0.81
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1182 cctgaggctccgcagcctgcccccc 1206
|||||||||||| ||||||||||||
Sbjct: 10015216 cctgaggctccggagcctgcccccc 10015192
>gi|22060431|ref|NT_035625.1|HsX_35787 Homo sapiens chromosome X reference
genomic contig
Length = 2543404
Score = 40.1 bits (20), Expect = 3.2
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 aagccaagaccaaaatgttacaga 35
||||||||| ||||||||||||||
Sbjct: 2131925 aagccaagaacaaaatgttacaga 2131948
>gi|22047328|ref|NT_008580.10|Hs9_8737 Homo sapiens chromosome 9 reference
genomic contig
Length = 9993790
Score = 40.1 bits (20), Expect = 3.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 533 gaaggaaggagtcttcagga 552
||||||||||||||||||||
Sbjct: 1493565 gaaggaaggagtcttcagga 1493584
>gi|22050628|ref|NT_007933.10|Hs7_8090 Homo sapiens chromosome 7 reference
genomic contig
Length = 64386157
Score = 40.1 bits (20), Expect = 3.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 aagccaagaccaaaatgtta 31
||||||||||||||||||||
Sbjct: 61631964 aagccaagaccaaaatgtta 61631983
>gi|22053587|ref|NT_023451.10|Hs6_23607 Homo sapiens chromosome 6 reference
genomic contig
Length = 7592559
Score = 40.1 bits (20), Expect = 3.2
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 105 ccctggagcctctgctggcc 124
||||||||||||||||||||
Sbjct: 5306449 ccctggagcctctgctggcc 5306430
>gi|22063103|ref|NT_010704.10|Hs17_10861 Homo sapiens chromosome 17
reference genomic contig
Length = 3152890
Score = 40.1 bits (20), Expect = 3.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1342 ttggcaagcagtaacctttt 1361
||||||||||||||||||||
Sbjct: 774360 ttggcaagcagtaacctttt 774379
>gi|22055475|ref|NT_010332.12|Hs15_10489 Homo sapiens chromosome 15
reference genomic contig
Length = 3019182
Score = 40.1 bits (20), Expect = 3.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 957 aaaagaagaagaagtttctc 976
||||||||||||||||||||
Sbjct: 2885432 aaaagaagaagaagtttctc 2885451
>gi|22062213|ref|NT_009781.12|Hs12_9938 Homo sapiens chromosome 12 reference
genomic contig
Length = 5576829
Score = 40.1 bits (20), Expect = 3.2
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 532 ggaaggaaggagtcttcagg 551
||||||||||||||||||||
Sbjct: 4843510 ggaaggaaggagtcttcagg 4843491
>gi|22043484|ref|NT_034383.1|Hs1_34545 Homo sapiens chromosome 1 reference
genomic contig
Length = 1385315
Score = 40.1 bits (20), Expect = 3.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 219 aacctctcaaggtcattttt 238
||||||||||||||||||||
Sbjct: 210322 aacctctcaaggtcattttt 210341
>gi|22041985|ref|NT_029223.8|Hs1_29382 Homo sapiens chromosome 1 reference
genomic contig
Length = 3283895
Score = 40.1 bits (20), Expect = 3.2
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 286 ccttttactattaaaagagc 305
||||||||||||||||||||
Sbjct: 1406615 ccttttactattaaaagagc 1406596
Database: Homo Sapiens Gene(masked sequence)
Posted date: Nov 13, 2002 9:59 PM
Number of letters in database: 2,826,392,627
Number of sequences in database: 1395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 1391
length of database: 2,826,392,627
effective HSP length: 21
effective length of query: 1370
effective length of database: 2,826,363,332
effective search space: 3872117764840
effective search space used: 3872117764840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)