Search to ncbiHGDS database
Query= 20030531C-003184 (20030531C-003184) 20030531C-003184
(2483 letters)
Database: Homo Sapiens Gene(masked sequence)
1395 sequences; 2,826,392,627 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|22067223|ref|NT_011512.6|Hs21_11669 Homo sapiens chromosome ... 127 3e-26
Alignment gi|22067527|ref|NT_010478.10|Hs16_10635 Homo sapiens chromosome... 48 0.024
Alignment gi|22042297|ref|NT_029256.8|Hs3_29415 Homo sapiens chromosome 3... 44 0.37
Alignment gi|22062703|ref|NT_033241.2|Hs11_33417 Homo sapiens chromosome ... 44 0.37
Alignment gi|22057594|ref|NT_011772.8|HsX_11929 Homo sapiens chromosome X... 42 1.5
Alignment gi|22047344|ref|NT_030735.6|Hs8_30991 Homo sapiens chromosome 8... 42 1.5
Alignment gi|22050628|ref|NT_007933.10|Hs7_8090 Homo sapiens chromosome 7... 42 1.5
Alignment gi|22052439|ref|NT_006788.10|Hs5_6945 Homo sapiens chromosome 5... 42 1.5
Alignment gi|22044506|ref|NT_006344.12|Hs4_6501 Homo sapiens chromosome 4... 42 1.5
Alignment gi|22044651|ref|NT_005332.10|Hs2_5489 Homo sapiens chromosome 2... 42 1.5
Alignment gi|22064605|ref|NT_010823.10|Hs17_10980 Homo sapiens chromosome... 42 1.5
Alignment gi|22042287|ref|NT_029865.7|Hs1_30120 Homo sapiens chromosome 1... 42 1.5
Alignment gi|22045785|ref|NT_023974.12|Hs9_24130 Homo sapiens chromosome ... 40 5.7
Alignment gi|22046387|ref|NT_023663.12|Hs8_23819 Homo sapiens chromosome ... 40 5.7
Alignment gi|22063448|ref|NT_007819.10|Hs7_7976 Homo sapiens chromosome 7... 40 5.7
Alignment gi|22056424|ref|NT_033950.2|Hs6_34105 Homo sapiens chromosome 6... 40 5.7
Alignment gi|22051492|ref|NT_006654.10|Hs5_6811 Homo sapiens chromosome 5... 40 5.7
Alignment gi|22050629|ref|NT_006431.10|Hs5_6588 Homo sapiens chromosome 5... 40 5.7
Alignment gi|22047485|ref|NT_023132.9|Hs5_23288 Homo sapiens chromosome 5... 40 5.7
Alignment gi|22047167|ref|NT_023089.10|Hs5_23245 Homo sapiens chromosome ... 40 5.7
>gi|22067223|ref|NT_011512.6|Hs21_11669 Homo sapiens chromosome 21 reference
genomic contig
Length = 28515771
Score = 127 bits (64), Expect = 3e-26
Identities = 118/136 (86%)
Strand = Plus / Plus
Query: 964 tggaaacaaataccaaactgtgaaaatgtcaaaacgacccattgtgtctttcctcaaaat 1023
|||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 20298832 tggaaacaaatacctgactgtgaaaatgtcaaaactacccagtgtgtctttcctcaaaac 20298891
Query: 1024 gttttcacgaaaggaattttcttcatccgtgtccaagcatctaatggaaatagcacatct 1083
|||||| |||||||||| | | |||| || ||||||||| ||||||||| |||||||
Sbjct: 20298892 gttttccaaaaaggaatttaccttctccgcgtacaagcatctgatggaaataacacatct 20298951
Query: 1084 ctttggtccgaagaga 1099
||||||| |||||||
Sbjct: 20298952 ttttggtctgaagaga 20298967
Score = 103 bits (52), Expect = 5e-19
Identities = 143/172 (83%), Gaps = 6/172 (3%)
Strand = Plus / Plus
Query: 331 gggatggataattggataaagttgcctggatgtcaatatgttactagcactgaatgcaac 390
|||||||||||||||||||| ||| |||| ||||| || ||||||| || ||||||||
Sbjct: 20290704 gggatggataattggataaaattgtctgggtgtcagaatattactagtaccaaatgcaac 20290763
Query: 391 ttttcttccatcaagcttaaaagcgtgtatgaaaaaattaaattgcgtataagagcagaa 450
|||||||| ||||||| || || |||||| ||||||||||||||||||||||||||
Sbjct: 20290764 ttttcttcactcaagctgaat---gtttatgaagaaattaaattgcgtataagagcagaa 20290820
Query: 451 acaggaaacagcacttctccgtggtatgaggttgagccgtttataccatttc 502
| || ||| ||||||| | |||||||||||||| | |||| ||||||||
Sbjct: 20290821 aaagaaaa---cacttcttcatggtatgaggttgactcatttacaccatttc 20290869
Score = 95.6 bits (48), Expect = 1e-16
Identities = 128/154 (83%), Gaps = 3/154 (1%)
Strand = Plus / Plus
Query: 514 attggccctccagatgtacatttagaagccgaagataaagcaataataataaacctctct 573
||||| |||||||| |||||||||||||| |||||||| |||||| | ||| || |||
Sbjct: 20292974 attggtcctccagaagtacatttagaagctgaagataaggcaatagtgatacacatct-- 20293031
Query: 574 cctcctggcacaaaaaacagtgtcatgtgggctatggatagttcaagtttcgtgtatagc 633
||||||| |||||| | ||||| ||||||||| ||||| ||| ||| || ||||||
Sbjct: 20293032 -ctcctggaacaaaagatagtgttatgtgggctttggatggtttaagctttacatatagc 20293090
Query: 634 ttagtaatctggaaaaactcttcaagtctagaag 667
||||| |||||||||||||||||| || ||||||
Sbjct: 20293091 ttagttatctggaaaaactcttcaggtgtagaag 20293124
Score = 93.7 bits (47), Expect = 4e-16
Identities = 98/115 (85%)
Strand = Plus / Plus
Query: 1319 ctaacttgaaaccactgactgtgtattgtgtcaaagccagagcactcatcgagaatgaca 1378
|||| ||||||||||||||||| |||||||| ||||||||||||| || | | |||| |
Sbjct: 20302496 ctaatttgaaaccactgactgtatattgtgtgaaagccagagcacacaccatggatgaaa 20302555
Query: 1379 ggtggaatagaagcagtgtttttagtgacactgtgtgcgagaaaaccaaaccagg 1433
| ||||| ||||||||||||||||||| |||| || |||||||| ||||||||
Sbjct: 20302556 agctgaataaaagcagtgtttttagtgacgctgtatgtgagaaaacaaaaccagg 20302610
Score = 85.7 bits (43), Expect = 1e-13
Identities = 106/127 (83%)
Strand = Plus / Plus
Query: 1577 agtatttcgctgaacagccactcaagaatctgcttctctccacctctgaagaacaaaccg 1636
|||||||| ||||||||||| | |||||||| || || || || ||||| ||||||| ||
Sbjct: 20305015 agtatttctctgaacagccattgaagaatcttctgctttcaacttctgaggaacaaatcg 20305074
Query: 1637 aaatatgtttcatcgttgaaaatacaaacactattactacaatagaagagactgatcaaa 1696
||| ||||||||| ||||||||| || ||| ||| ||||| ||||||| ||| ||||||
Sbjct: 20305075 aaaaatgtttcataattgaaaatataagcacaattgctacagtagaagaaactaatcaaa 20305134
Query: 1697 ttgatga 1703
||||||
Sbjct: 20305135 ctgatga 20305141
Score = 75.8 bits (38), Expect = 1e-10
Identities = 104/126 (82%)
Strand = Plus / Plus
Query: 683 tttatgccagagataaaattcaccaactctcaccagagacaacttactgtttaaaagtta 742
||||| ||||| |||||||| | |||||||||||||||| ||||| ||| |||||||||
Sbjct: 20293252 tttattccagacataaaatttataaactctcaccagagactacttattgtctaaaagtta 20293311
Query: 743 aagccggactccgttcgccaagaaaagtcggtgtctacagtccagtgtattgtataaata 802
|||| | ||| | | || || | ||| | |||||||| |||||||| |||||||||| |
Sbjct: 20293312 aagcagcactacttacgtcatggaaaattggtgtctatagtccagtacattgtataaaga 20293371
Query: 803 ccacag 808
||||||
Sbjct: 20293372 ccacag 20293377
Score = 63.9 bits (32), Expect = 4e-07
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 1499 tttatggtgtgaaagtcgtctcgcgatgtatcaattatgtgttcttcccatcaagtaaac 1558
|||||| || ||||||| ||| | |||| ||||||||||| ||||| |||||| |||||
Sbjct: 20303405 tttatgctgcgaaagtcttcttgagatgcatcaattatgtcttctttccatcacttaaac 20303464
Query: 1559 ctccttccactatagatgag 1578
|| |||||| ||||||||||
Sbjct: 20303465 cttcttccagtatagatgag 20303484
Score = 61.9 bits (31), Expect = 2e-06
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 1926 aaaaagcaccttcagatcatcggtcctcaaaatacaggcaagcacttaactctttaaaa 1984
||||| || ||||||||||| |||||| ||||||| ||||||| ||||||| |||||||
Sbjct: 20305366 aaaaaacatcttcagatcataggtcctaaaaatacgggcaagctcttaactatttaaaa 20305424
Score = 56.0 bits (28), Expect = 1e-04
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 864 ctatgttcttaaatggaattacacctatgaaaatgtgacttttcaagctcagtggctcca 923
|||||||||||||||| |||| || |||| ||| |||| ||||||| ||||||||||||
Sbjct: 20295002 ctatgttcttaaatgggattatacatatgcaaacatgacctttcaagttcagtggctcca 20295061
Score = 50.1 bits (25), Expect = 0.006
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 1217 ctgtgaaccagctttacccactaatttatgaagttatttttagagaaaacacttcagata 1276
|||||| |||| ||| ||||| ||||||||| |||||||| | |||||||||||| ||
Sbjct: 20299180 ctgtgatccaggattatccactgatttatgaaattattttttgggaaaacacttcaaatg 20299239
Query: 1277 ctgag 1281
|||||
Sbjct: 20299240 ctgag 20299244
Score = 44.1 bits (22), Expect = 0.37
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 244 atcattgatgacaacttcatcctgaaatggaagagcagcagtgaatccgtcagcaatgtg 303
||||| ||||||||||| ||||||| ||||| || ||| ||| || ||| | ||||||
Sbjct: 20285266 atcatagatgacaactttatcctgaggtggaacaggagcgatgagtctgtcgggaatgtg 20285325
Query: 304 actttttcagcagattatcaaa 325
||||||||| ||||||||||
Sbjct: 20285326 actttttcattcgattatcaaa 20285347
>gi|22067527|ref|NT_010478.10|Hs16_10635 Homo sapiens chromosome 16
reference genomic contig
Length = 4329165
Score = 48.1 bits (24), Expect = 0.024
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 967 aaacaaataccaaactgtgaaaatgtca 994
|||||||||||||||||||| |||||||
Sbjct: 1396030 aaacaaataccaaactgtgacaatgtca 1396057
>gi|22042297|ref|NT_029256.8|Hs3_29415 Homo sapiens chromosome 3 reference
genomic contig
Length = 1530126
Score = 44.1 bits (22), Expect = 0.37
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 798 aaataccacagtgaaacatcac 819
||||||||||||||||||||||
Sbjct: 142335 aaataccacagtgaaacatcac 142314
>gi|22062703|ref|NT_033241.2|Hs11_33417 Homo sapiens chromosome 11 reference
genomic contig
Length = 7748307
Score = 44.1 bits (22), Expect = 0.37
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2088 cctccatcttcctgatgtcacc 2109
||||||||||||||||||||||
Sbjct: 1055983 cctccatcttcctgatgtcacc 1056004
>gi|22057594|ref|NT_011772.8|HsX_11929 Homo sapiens chromosome X reference
genomic contig
Length = 1390134
Score = 42.1 bits (21), Expect = 1.5
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1309 tttactttctctaacttgaaaccactgac 1337
|||||||||||||| || |||||||||||
Sbjct: 808913 tttactttctctaatttaaaaccactgac 808885
>gi|22047344|ref|NT_030735.6|Hs8_30991 Homo sapiens chromosome 8 reference
genomic contig
Length = 2412733
Score = 42.1 bits (21), Expect = 1.5
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 249 tgatgacaacttcatcctgaa 269
|||||||||||||||||||||
Sbjct: 2185621 tgatgacaacttcatcctgaa 2185601
>gi|22050628|ref|NT_007933.10|Hs7_8090 Homo sapiens chromosome 7 reference
genomic contig
Length = 64386157
Score = 42.1 bits (21), Expect = 1.5
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 976 ccaaactgtgaaaatgtcaaa 996
|||||||||||||||||||||
Sbjct: 34532556 ccaaactgtgaaaatgtcaaa 34532576
>gi|22052439|ref|NT_006788.10|Hs5_6945 Homo sapiens chromosome 5 reference
genomic contig
Length = 3960908
Score = 42.1 bits (21), Expect = 1.5
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 918 gctccatgcctttttaaaaaa 938
|||||||||||||||||||||
Sbjct: 3547654 gctccatgcctttttaaaaaa 3547674
>gi|22044506|ref|NT_006344.12|Hs4_6501 Homo sapiens chromosome 4 reference
genomic contig
Length = 7839908
Score = 42.1 bits (21), Expect = 1.5
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 863 tctatgttcttaaatggaatt 883
|||||||||||||||||||||
Sbjct: 4943687 tctatgttcttaaatggaatt 4943667
>gi|22044651|ref|NT_005332.10|Hs2_5489 Homo sapiens chromosome 2 reference
genomic contig
Length = 9107791
Score = 42.1 bits (21), Expect = 1.5
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 249 tgatgacaacttcatcctgaa 269
|||||||||||||||||||||
Sbjct: 6402230 tgatgacaacttcatcctgaa 6402210
Score = 40.1 bits (20), Expect = 5.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 209 cagatctcagatctcctgaa 228
||||||||||||||||||||
Sbjct: 307816 cagatctcagatctcctgaa 307835
>gi|22064605|ref|NT_010823.10|Hs17_10980 Homo sapiens chromosome 17
reference genomic contig
Length = 2063298
Score = 42.1 bits (21), Expect = 1.5
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 498 atttcaagaagcacaaattgg 518
|||||||||||||||||||||
Sbjct: 469009 atttcaagaagcacaaattgg 469029
>gi|22042287|ref|NT_029865.7|Hs1_30120 Homo sapiens chromosome 1 reference
genomic contig
Length = 4395636
Score = 42.1 bits (21), Expect = 1.5
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 546 agataaagcaataataataaa 566
|||||||||||||||||||||
Sbjct: 601186 agataaagcaataataataaa 601166
>gi|22045785|ref|NT_023974.12|Hs9_24130 Homo sapiens chromosome 9 reference
genomic contig
Length = 20138537
Score = 40.1 bits (20), Expect = 5.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 489 gtttataccatttcaagaag 508
||||||||||||||||||||
Sbjct: 3746192 gtttataccatttcaagaag 3746173
>gi|22046387|ref|NT_023663.12|Hs8_23819 Homo sapiens chromosome 8
reference genomic contig
Length = 2255428
Score = 40.1 bits (20), Expect = 5.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 722 caacttactgtttaaaagtt 741
||||||||||||||||||||
Sbjct: 318049 caacttactgtttaaaagtt 318068
>gi|22063448|ref|NT_007819.10|Hs7_7976 Homo sapiens chromosome 7 reference
genomic contig
Length = 47428039
Score = 40.1 bits (20), Expect = 5.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 27 gcacgggtcccaggtcccgg 46
||||||||||||||||||||
Sbjct: 34361623 gcacgggtcccaggtcccgg 34361642
>gi|22056424|ref|NT_033950.2|Hs6_34105 Homo sapiens chromosome 6 genomic
contig, alternate haplotype DR51
Length = 582053
Score = 40.1 bits (20), Expect = 5.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2464 catttatcccaattacatca 2483
||||||||||||||||||||
Sbjct: 74738 catttatcccaattacatca 74719
>gi|22051492|ref|NT_006654.10|Hs5_6811 Homo sapiens chromosome 5 reference
genomic contig
Length = 6396214
Score = 40.1 bits (20), Expect = 5.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1947 ggtcctcaaaatacaggcaa 1966
||||||||||||||||||||
Sbjct: 3804180 ggtcctcaaaatacaggcaa 3804199
>gi|22050629|ref|NT_006431.10|Hs5_6588 Homo sapiens chromosome 5 reference
genomic contig
Length = 19491418
Score = 40.1 bits (20), Expect = 5.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2293 tggaaatgtctttagaaagg 2312
||||||||||||||||||||
Sbjct: 15045120 tggaaatgtctttagaaagg 15045101
>gi|22047485|ref|NT_023132.9|Hs5_23288 Homo sapiens chromosome 5 reference
genomic contig
Length = 10043041
Score = 40.1 bits (20), Expect = 5.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1436 gcacttcccaagcctggctt 1455
||||||||||||||||||||
Sbjct: 5122500 gcacttcccaagcctggctt 5122519
>gi|22047167|ref|NT_023089.10|Hs5_23245 Homo sapiens chromosome 5 reference
genomic contig
Length = 2019772
Score = 40.1 bits (20), Expect = 5.7
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1600 aagaatctgcttctctccacctctgaag 1627
||||||||| |||| |||||||||||||
Sbjct: 1030540 aagaatctgtttctttccacctctgaag 1030513
Database: Homo Sapiens Gene(masked sequence)
Posted date: Nov 13, 2002 9:59 PM
Number of letters in database: 2,826,392,627
Number of sequences in database: 1395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 2483
length of database: 2,826,392,627
effective HSP length: 22
effective length of query: 2461
effective length of database: 2,826,361,937
effective search space: 6955676726957
effective search space used: 6955676726957
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)