Search to ncbiHGDS database
Query= 20030531C-003954 (20030531C-003954) 20030531C-003954
(954 letters)
Database: Homo Sapiens Gene(masked sequence)
1395 sequences; 2,826,392,627 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|22065129|ref|NT_024901.10|Hs17_25057 Homo sapiens chromosome... 902 0.0
Alignment gi|22052191|ref|NT_006713.10|Hs5_6870 Homo sapiens chromosome 5... 50 0.002
Alignment gi|22055120|ref|NT_010265.12|Hs15_10422 Homo sapiens chromosome... 48 0.009
Alignment gi|22059881|ref|NT_024980.8|Hs18_25136 Homo sapiens chromosome ... 46 0.035
Alignment gi|22045985|ref|NT_027081.8|Hs9_27241 Homo sapiens chromosome 9... 42 0.55
Alignment gi|22061075|ref|NT_007592.10|Hs6_7749 Homo sapiens chromosome 6... 42 0.55
Alignment gi|17458602|ref|NT_030871.1|Hs20_31127 Homo sapiens chromosome ... 42 0.55
Alignment gi|22063928|ref|NT_033903.2|Hs11_34058 Homo sapiens chromosome ... 42 0.55
Alignment gi|22047194|ref|NT_023811.11|Hs8_23967 Homo sapiens chromosome ... 40 2.2
Alignment gi|22056350|ref|NT_033944.2|Hs6_34099 Homo sapiens chromosome 6... 40 2.2
Alignment gi|22040940|ref|NT_015926.10|Hs2_16082 Homo sapiens chromosome ... 40 2.2
Alignment gi|22040872|ref|NT_015805.10|Hs2_15961 Homo sapiens chromosome ... 40 2.2
Alignment gi|22064755|ref|NT_010840.8|Hs17_10997 Homo sapiens chromosome ... 40 2.2
Alignment gi|22050229|ref|NT_026437.8|Hs14_26604 Homo sapiens chromosome ... 40 2.2
Alignment gi|22061766|ref|NT_009759.12|Hs12_9916 Homo sapiens chromosome ... 40 2.2
Alignment gi|22062703|ref|NT_033241.2|Hs11_33417 Homo sapiens chromosome ... 40 2.2
Alignment gi|22043372|ref|NT_034379.1|Hs1_34541 Homo sapiens chromosome 1... 40 2.2
Alignment gi|22042225|ref|NT_029862.7|Hs1_30117 Homo sapiens chromosome 1... 40 2.2
Alignment gi|22055203|ref|NT_011588.10|HsX_11745 Homo sapiens chromosome ... 38 8.6
Alignment gi|22050632|ref|NT_008251.10|Hs8_8408 Homo sapiens chromosome 8... 38 8.6
>gi|22065129|ref|NT_024901.10|Hs17_25057 Homo sapiens chromosome 17
reference genomic contig
Length = 1405484
Score = 902 bits (455), Expect = 0.0
Identities = 736/827 (88%), Gaps = 2/827 (0%)
Strand = Plus / Minus
Query: 117 aggtgtgcctgtgccaggatgaggtcacggacgactacatcggcgacaacaccacggtgg 176
|||| |||||||| || ||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct: 313558 aggtatgcctgtgtcaagatgaggtcacggacgattacatcggagacaacaccacagtgg 313499
Query: 177 actacacgctgtacgagtccgtgtgcttcaagaaggacgtgcggacctttaaggcctggt 236
||||||| ||| |||||| |||||| ||||||||||||||||| |||||| |||||||
Sbjct: 313498 actacactttgttcgagtctttgtgctccaagaaggacgtgcggaactttaaagcctggt 313439
Query: 237 tcctcccggtcatgtactccatcatctgcttcgtgggcctgctgggcaacgggctggtca 296
||||||| |||||||||||||||| || ||||||||||| |||||||| |||||||||
Sbjct: 313438 tcctccctatcatgtactccatcatttgtttcgtgggcctactgggcaatgggctggtcg 313379
Query: 297 tgctgacctacatctatttcaagaggctcaagaccatgaccgacacgtacctgctcaact 356
|| ||||||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 313378 tgttgacctatatctatttcaagaggctcaagaccatgaccgatacctacctgctcaacc 313319
Query: 357 tggccgtggccgacatcctcttcctcctgacccttcccttctgggcatacagcgcggcca 416
|||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 313318 tggcggtggcagacatcctcttcctcctgacccttcccttctgggcctacagcgcggcca 313259
Query: 417 agtcctgggtcttcggagtccacgtctgcaaactcatcttcggcatctacaagatcagct 476
|||||||||||||||| |||||| | ||||| |||||||| | |||||||||||| ||||
Sbjct: 313258 agtcctgggtcttcggtgtccacttttgcaagctcatctttgccatctacaagatgagct 313199
Query: 477 tcttcagcggcatgcttctgcttctctgcatcagcatcgaccgctacgtggccatcgtgc 536
||||||| |||||||| || ||||| ||||||||||| |||||||||||||||||||| |
Sbjct: 313198 tcttcagtggcatgctcctacttctttgcatcagcattgaccgctacgtggccatcgtcc 313139
Query: 537 aggccgtgtcggcgcaccgccaccgcgcccgcgtgcttctcatcagcaagctctcctgcg 596
|||| || || || ||||||||||| |||||||| ||||||||||||||||| ||||| |
Sbjct: 313138 aggctgtctcagctcaccgccaccgtgcccgcgtccttctcatcagcaagctgtcctgtg 313079
Query: 597 tgggcatctggatgctggccatggtgctgtccacgccggagctgctgtacagcggcaccc 656
||||||||||||| || |||| ||||| |||| || ||||| |||||||| | | ||
Sbjct: 313078 tgggcatctggatactagccacagtgctctccatcccagagctcctgtacagtgacctcc 313019
Query: 657 agaagagcagcagcgagcaggcgctccggtgctccctcatcaccgagcacgtggaggccc 716
||| ||||||||| ||||| ||| | || ||||| |||||||| ||||| |||||||||
Sbjct: 313018 agaggagcagcagtgagcaagcgatgcgatgctctctcatcacagagcatgtggaggcct 312959
Query: 717 tgatcaccatccaggtggcccagatggtggtgggctttctgatccccctggtggccatga 776
| ||||||||||||||||||||||||||| | ||||||||| |||||||| |||||||||
Sbjct: 312958 ttatcaccatccaggtggcccagatggtgatcggctttctggtccccctgctggccatga 312899
Query: 777 gcttctgctacctcgtcatcatccgcaccctgctccaggcgcgcaacttcgagcgcaaca 836
||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 312898 gcttctgttaccttgtcatcatccgcaccctgctccaggcacgcaactttgagcgcaaca 312839
Query: 837 aggcccatca-ggtgatcatcgccgtggtcgtggtcttcgtggccttccagctgccctac 895
||||| |||| |||||||||||| ||||||||||||||| | | ||||||||||||||||
Sbjct: 312838 aggcc-atcaaggtgatcatcgctgtggtcgtggtcttcatagtcttccagctgccctac 312780
Query: 896 aacggcgtggtcctggcccagacggtggccaatttcaacatcaccag 942
|| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 312779 aatggggtggtcctggcccagacggtggccaacttcaacatcaccag 312733
Score = 69.9 bits (35), Expect = 2e-09
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 87 tgctggtggtggctctccttgtcattttccaggtg 121
|||||||||||||||||||||||||||||||||||
Sbjct: 316662 tgctggtggtggctctccttgtcattttccaggtg 316628
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 9 gaggcccggcacaaccttcctgtgtggttt 38
|||||| |||||| ||||||||||||||||
Sbjct: 323195 gaggccgggcacagccttcctgtgtggttt 323166
>gi|22052191|ref|NT_006713.10|Hs5_6870 Homo sapiens chromosome 5 reference
genomic contig
Length = 13295383
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 502 ctgcatcagcatcgaccgctacgtggccatcgt 534
||||||||||||| |||||||| ||||||||||
Sbjct: 5271279 ctgcatcagcatcaaccgctacctggccatcgt 5271247
>gi|22055120|ref|NT_010265.12|Hs15_10422 Homo sapiens chromosome 15
reference genomic contig
Length = 5684371
Score = 48.1 bits (24), Expect = 0.009
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 379 cctcctgacccttcccttctgggc 402
||||||||||||||||||||||||
Sbjct: 3802334 cctcctgacccttcccttctgggc 3802357
>gi|22059881|ref|NT_024980.8|Hs18_25136 Homo sapiens chromosome 18
reference genomic contig
Length = 293040
Score = 46.1 bits (23), Expect = 0.035
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 515 gaccgctacgtggccatcgtgca 537
|||||||||||||||||||||||
Sbjct: 26418 gaccgctacgtggccatcgtgca 26396
>gi|22045985|ref|NT_027081.8|Hs9_27241 Homo sapiens chromosome 9 reference
genomic contig
Length = 7631606
Score = 42.1 bits (21), Expect = 0.55
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 378 tcctcctgacccttcccttct 398
|||||||||||||||||||||
Sbjct: 3524275 tcctcctgacccttcccttct 3524255
>gi|22061075|ref|NT_007592.10|Hs6_7749 Homo sapiens chromosome 6 reference
genomic contig
Length = 48753116
Score = 42.1 bits (21), Expect = 0.55
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 486 gcatgcttctgcttctctgca 506
|||||||||||||||||||||
Sbjct: 12086094 gcatgcttctgcttctctgca 12086114
>gi|17458602|ref|NT_030871.1|Hs20_31127 Homo sapiens chromosome 20
reference genomic contig
Length = 1147210
Score = 42.1 bits (21), Expect = 0.55
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 276 tgctgggcaacgggctggtcatgct 300
|||||||||||| ||||||||||||
Sbjct: 850654 tgctgggcaacgcgctggtcatgct 850630
>gi|22063928|ref|NT_033903.2|Hs11_34058 Homo sapiens chromosome 11 reference
genomic contig
Length = 6368572
Score = 42.1 bits (21), Expect = 0.55
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 507 tcagcatcgaccgctacgtggccatcgtg 535
||||| ||||||||||| |||||||||||
Sbjct: 2230385 tcagcttcgaccgctacctggccatcgtg 2230357
>gi|22047194|ref|NT_023811.11|Hs8_23967 Homo sapiens chromosome 8
reference genomic contig
Length = 8947889
Score = 40.1 bits (20), Expect = 2.2
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 36 tttcagcagccaagagtgac 55
||||||||||||||||||||
Sbjct: 945102 tttcagcagccaagagtgac 945083
>gi|22056350|ref|NT_033944.2|Hs6_34099 Homo sapiens chromosome 6 reference
genomic contig
Length = 19894959
Score = 40.1 bits (20), Expect = 2.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 924 ccaatttcaacatcaccagc 943
||||||||||||||||||||
Sbjct: 3554269 ccaatttcaacatcaccagc 3554288
>gi|22040940|ref|NT_015926.10|Hs2_16082 Homo sapiens chromosome 2 reference
genomic contig
Length = 2726269
Score = 40.1 bits (20), Expect = 2.2
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 76 gaagaagagcctgctggtgg 95
||||||||||||||||||||
Sbjct: 1178961 gaagaagagcctgctggtgg 1178942
>gi|22040872|ref|NT_015805.10|Hs2_15961 Homo sapiens chromosome 2
reference genomic contig
Length = 4025462
Score = 40.1 bits (20), Expect = 2.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 80 aagagcctgctggtggtggc 99
||||||||||||||||||||
Sbjct: 724517 aagagcctgctggtggtggc 724536
>gi|22064755|ref|NT_010840.8|Hs17_10997 Homo sapiens chromosome 17
reference genomic contig
Length = 1378293
Score = 40.1 bits (20), Expect = 2.2
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 514 cgaccgctacgtggccatcg 533
||||||||||||||||||||
Sbjct: 993775 cgaccgctacgtggccatcg 993756
>gi|22050229|ref|NT_026437.8|Hs14_26604 Homo sapiens chromosome 14 reference
genomic contig
Length = 39365623
Score = 40.1 bits (20), Expect = 2.2
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 380 ctcctgacccttcccttctg 399
||||||||||||||||||||
Sbjct: 24958470 ctcctgacccttcccttctg 24958451
Score = 38.2 bits (19), Expect = 8.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 649 cggcacccagaagagcagc 667
|||||||||||||||||||
Sbjct: 36539723 cggcacccagaagagcagc 36539741
>gi|22061766|ref|NT_009759.12|Hs12_9916 Homo sapiens chromosome 12 reference
genomic contig
Length = 2957924
Score = 40.1 bits (20), Expect = 2.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 289 gctggtcatgctgacctaca 308
||||||||||||||||||||
Sbjct: 1850644 gctggtcatgctgacctaca 1850663
>gi|22062703|ref|NT_033241.2|Hs11_33417 Homo sapiens chromosome 11 reference
genomic contig
Length = 7748307
Score = 40.1 bits (20), Expect = 2.2
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 272 ggcctgctgggcaacgggctggtc 295
|||||| |||||||||||||||||
Sbjct: 7439566 ggcctggtgggcaacgggctggtc 7439543
>gi|22043372|ref|NT_034379.1|Hs1_34541 Homo sapiens chromosome 1 reference
genomic contig
Length = 1945707
Score = 40.1 bits (20), Expect = 2.2
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 369 acatcctcttcctcctgacccttc 392
||||||| ||||||||||||||||
Sbjct: 1042302 acatccttttcctcctgacccttc 1042279
>gi|22042225|ref|NT_029862.7|Hs1_30117 Homo sapiens chromosome 1 reference
genomic contig
Length = 4719077
Score = 40.1 bits (20), Expect = 2.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 268 cgtgggcctgctgggcaacg 287
||||||||||||||||||||
Sbjct: 3967023 cgtgggcctgctgggcaacg 3967042
>gi|22055203|ref|NT_011588.10|HsX_11745 Homo sapiens chromosome X reference
genomic contig
Length = 6021937
Score = 38.2 bits (19), Expect = 8.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 487 catgcttctgcttctctgc 505
|||||||||||||||||||
Sbjct: 4756950 catgcttctgcttctctgc 4756932
>gi|22050632|ref|NT_008251.10|Hs8_8408 Homo sapiens chromosome 8 reference
genomic contig
Length = 3873302
Score = 38.2 bits (19), Expect = 8.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 228 aggcctggttcctcccggt 246
|||||||||||||||||||
Sbjct: 1607800 aggcctggttcctcccggt 1607782
Database: Homo Sapiens Gene(masked sequence)
Posted date: Nov 13, 2002 9:59 PM
Number of letters in database: 2,826,392,627
Number of sequences in database: 1395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 954
length of database: 2,826,392,627
effective HSP length: 21
effective length of query: 933
effective length of database: 2,826,363,332
effective search space: 2636996988756
effective search space used: 2636996988756
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)