Search to ncbiHGDS database
Query= 20060611C-006585 (20060611C-006585) 20060611C-006585
(865 letters)
Database: Homo Sapiens Gene(masked sequence)
545 sequences; 2,866,452,029 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|29791375|ref|NT_032977.5|Hs1_33153 Homo sapiens chromosome 1 ... 214 6e-53
Alignment gi|29804810|ref|NT_009714.15|Hs12_9871 Homo sapiens chromosome 1... 204 6e-50
Alignment gi|29793179|ref|NT_023935.15|Hs9_24091 Homo sapiens chromosome 9... 42 0.51
Alignment gi|29796774|ref|NT_008046.13|Hs8_8203 Homo sapiens chromosome 8 ... 40 2.0
Alignment gi|29801752|ref|NT_025741.12|Hs6_25897 Homo sapiens chromosome 6... 40 2.0
Alignment gi|29804415|ref|NT_007592.13|Hs6_7749 Homo sapiens chromosome 6 ... 40 2.0
Alignment gi|29791837|ref|NT_005058.13|Hs2_5215 Homo sapiens chromosome 2 ... 40 2.0
Alignment gi|29792127|ref|NT_004511.15|Hs1_4668 Homo sapiens chromosome 1 ... 40 2.0
Alignment gi|29802670|ref|NT_011669.13|HsX_11826 Homo sapiens chromosome X... 38 7.9
Alignment gi|29802395|ref|NT_011651.13|HsX_11808 Homo sapiens chromosome X... 38 7.9
Alignment gi|29796698|ref|NT_023133.11|Hs5_23289 Homo sapiens chromosome 5... 38 7.9
Alignment gi|29793768|ref|NT_005999.15|Hs3_6156 Homo sapiens chromosome 3 ... 38 7.9
Alignment gi|29807292|ref|NT_011520.9|Hs22_11677 Homo sapiens chromosome 2... 38 7.9
Alignment gi|29806588|ref|NT_011519.10|Hs22_11676 Homo sapiens chromosome ... 38 7.9
Alignment gi|29806340|ref|NT_011515.10|Hs21_11672 Homo sapiens chromosome ... 38 7.9
Alignment gi|29791397|ref|NT_022327.12|Hs2_22483 Homo sapiens chromosome 2... 38 7.9
Alignment gi|29823165|ref|NT_010879.13|Hs18_11036 Homo sapiens chromosome ... 38 7.9
Alignment gi|29810036|ref|NT_037887.3|Hs16_37891 Homo sapiens chromosome 1... 38 7.9
Alignment gi|29802090|ref|NT_010274.15|Hs15_10431 Homo sapiens chromosome ... 38 7.9
Alignment gi|29736559|ref|NT_026437.10|Hs14_26604 Homo sapiens chromosome ... 38 7.9
>gi|29791375|ref|NT_032977.5|Hs1_33153 Homo sapiens chromosome 1 genomic
contig
Length = 21980636
Score = 214 bits (108), Expect = 6e-53
Identities = 165/184 (89%)
Strand = Plus / Minus
Query: 637 actcagaggctgcctcgatgcctgggcgtggccctggcgaaggagctcatcttcacaggc 696
|||||||||||||| || || ||||| ||||||||||||||||||||||||||||| |||
Sbjct: 5820237 actcagaggctgccccgttgtctgggggtggccctggcgaaggagctcatcttcacgggc 5820178
Query: 697 cgacgactgagtgggatgcaggcccaggctctggggctggtgaaccatgctgtggcccag 756
|||||||||||||| | ||||||| | |||||||||||||| || ||||||||||||
Sbjct: 5820177 cgacgactgagtggaactgaggcccacgtactggggctggtgaatcacgctgtggcccag 5820118
Query: 757 aacgaggagggcaacgccgcctaccaccgggctctagcactggcccaggagatcctgccc 816
||||||||||| ||||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct: 5820117 aacgaggagggggacgccgcctaccagcgggcacgagcactggcccaggagatcctgccc 5820058
Query: 817 cagg 820
||||
Sbjct: 5820057 cagg 5820054
Score = 147 bits (74), Expect = 1e-32
Identities = 89/94 (94%)
Strand = Plus / Minus
Query: 481 gcagccttccctgcgcccaccatcgcagctatggatgggtttgccttgggcggaggcctg 540
|||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 5822021 gcagccttccctgcacccaccattgcggctatggatgggtttgccttgggcggaggccta 5821962
Query: 541 gaacttgccctggcctgtgacctccgagtggcag 574
|| |||||||||||||||||||||||||||||||
Sbjct: 5821961 gagcttgccctggcctgtgacctccgagtggcag 5821928
Score = 123 bits (62), Expect = 2e-25
Identities = 80/86 (93%)
Strand = Plus / Minus
Query: 391 gcaggtgcagacctgaaggagcgggagcagatgagtgaggcggaggtgggggtctttgtc 450
|||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||||
Sbjct: 5823367 gcaggtgcagacctgaaggagcgggaacagatgagtgaagcagaggtgggggtgtttgtc 5823308
Query: 451 cagcggctccgaggcctgatgaatga 476
||||| ||||| ||||||||||||||
Sbjct: 5823307 cagcgactccggggcctgatgaatga 5823282
Score = 111 bits (56), Expect = 7e-22
Identities = 83/92 (90%)
Strand = Plus / Minus
Query: 305 agctgctggaagccctggcccagctgcgggaggaccggcacgtgcgcgtcctcatcttca 364
||||||||||| | |||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 5827064 agctgctggaaactctggcccagctgcgggaggaccggcaagtgcgtgtcctgctcttca 5827005
Query: 365 gaagtggagtgaagggtgtattctgcgcaggt 396
|||||||||||||||| || ||||| ||||||
Sbjct: 5827004 gaagtggagtgaagggcgtgttctgtgcaggt 5826973
Score = 83.8 bits (42), Expect = 1e-13
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 571 gcagcttcctcggctgtcatggggctgatcgagaccacccgagggctcctcccgggagca 630
|||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||| |||
Sbjct: 5820503 gcagcttcctcggcagtcatgggactgattgagaccacgcgagggctcctcccgggggca 5820444
Query: 631 gg 632
||
Sbjct: 5820443 gg 5820442
Score = 60.0 bits (30), Expect = 2e-06
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 241 atcactgagattctgatgaacagaccgagcgcccgaaatgccctggggaacgtctttgtc 300
|||||||||||||||||||||||||| ||||| |||||| ||||||| ||||| |||
Sbjct: 5827197 atcactgagattctgatgaacagaccttctgcccgcaatgccttggggaatgtcttcgtc 5827138
Query: 301 ag 302
||
Sbjct: 5827137 ag 5827136
Score = 48.1 bits (24), Expect = 0.008
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 818 aggctcccattgctgtgcgggctgggcaaactagctattgaccgagga 865
|||| |||||||| |||||| ||||||||| |||| ||||||||||||
Sbjct: 5814635 aggcccccattgccgtgcgg-ctgggcaaagtagccattgaccgagga 5814589
Score = 44.1 bits (22), Expect = 0.13
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 202 gagatccaagtgcgcgctctggagggtctcgaccaagg 239
||||||||||||||||| |||| ||||| ||||||||
Sbjct: 5836998 gagatccaagtgcgcgccctggcgggtccggaccaagg 5836961
>gi|29804810|ref|NT_009714.15|Hs12_9871 Homo sapiens chromosome 12 genomic
contig
Length = 27332148
Score = 204 bits (103), Expect = 6e-50
Identities = 181/206 (87%), Gaps = 2/206 (0%)
Strand = Plus / Plus
Query: 508 gctatggatgggtttgccttgggcggaggcctggaacttgccctggcctgtgacctccga 567
|||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||| |
Sbjct: 19712756 gctatggatgggttcgccttgggtggaggcctggagcttgccctggcctgcgacctccaa 19712815
Query: 568 gtggcagcttcctcggctgtcatggggctgatcgaga--ccacccgagggctcctcccgg 625
||||||||||||||| ||||||| ||||| |||| |||| |||||||||||||| |
Sbjct: 19712816 gtggcagcttcctcgaaagtcatggaactgattgagagaccactcgagggctcctcccag 19712875
Query: 626 gagcagggggcactcagaggctgcctcgatgcctgggcgtggccctggcgaaggagctca 685
| |||| || |||||||||||||| | |||||||| |||||||||| |||||||||||
Sbjct: 19712876 ggacaggaggtactcagaggctgccacactgcctgggggtggccctggtgaaggagctca 19712935
Query: 686 tcttcacaggccgacgactgagtggg 711
||||||||||| ||||||||||||||
Sbjct: 19712936 tcttcacaggctgacgactgagtggg 19712961
Score = 87.7 bits (44), Expect = 1e-14
Identities = 89/104 (85%)
Strand = Plus / Plus
Query: 727 ctggggctggtgaaccatgctgtggcccagaacgaggagggcaacgccgcctaccaccgg 786
|||||| ||||||| |||||||||||| | ||||||||||| | | | |||||||| ||
Sbjct: 19712964 ctggggttggtgaatcatgctgtggcctaaaacgaggagggtgatgtcacctaccactgg 19713023
Query: 787 gctctagcactggcccaggagatcctgccccaggctcccattgc 830
|| | |||||||||||||||| |||||||||||| ||||||||
Sbjct: 19713024 gcacaagcactggcccaggaggtcctgccccaggtccccattgc 19713067
>gi|29793179|ref|NT_023935.15|Hs9_24091 Homo sapiens chromosome 9 genomic
contig
Length = 20423745
Score = 42.1 bits (21), Expect = 0.51
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 237 aggaatcactgagattctgat 257
|||||||||||||||||||||
Sbjct: 4816184 aggaatcactgagattctgat 4816204
>gi|29796774|ref|NT_008046.13|Hs8_8203 Homo sapiens chromosome 8 genomic
contig
Length = 48691460
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 366 aagtggagtgaagggtgtat 385
||||||||||||||||||||
Sbjct: 2243451 aagtggagtgaagggtgtat 2243432
>gi|29801752|ref|NT_025741.12|Hs6_25897 Homo sapiens chromosome 6 genomic
contig
Length = 54050973
Score = 40.1 bits (20), Expect = 2.0
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 517 gggtttgccttgggcggaggcctg 540
||||||||||||||| ||||||||
Sbjct: 17069104 gggtttgccttgggcagaggcctg 17069081
>gi|29804415|ref|NT_007592.13|Hs6_7749 Homo sapiens chromosome 6 genomic
contig
Length = 48884767
Score = 40.1 bits (20), Expect = 2.0
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 295 tttgtcagccagctgctggaagccctgg 322
||||||| |||||||||||||| |||||
Sbjct: 24430740 tttgtcatccagctgctggaagacctgg 24430767
Score = 38.2 bits (19), Expect = 7.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 411 gcgggagcagatgagtgag 429
|||||||||||||||||||
Sbjct: 30068790 gcgggagcagatgagtgag 30068808
>gi|29791837|ref|NT_005058.13|Hs2_5215 Homo sapiens chromosome 2 genomic
contig
Length = 18291257
Score = 40.1 bits (20), Expect = 2.0
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 537 cctggaacttgccctggcctgtga 560
|||||||||||| |||||||||||
Sbjct: 3496469 cctggaacttgcgctggcctgtga 3496446
>gi|29792127|ref|NT_004511.15|Hs1_4668 Homo sapiens chromosome 1 genomic
contig
Length = 8161459
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 13 agtttgcaaaggcctggggc 32
||||||||||||||||||||
Sbjct: 1990713 agtttgcaaaggcctggggc 1990694
>gi|29802670|ref|NT_011669.13|HsX_11826 Homo sapiens chromosome X genomic
contig
Length = 9963289
Score = 38.2 bits (19), Expect = 7.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 797 tggcccaggagatcctgcc 815
|||||||||||||||||||
Sbjct: 4299068 tggcccaggagatcctgcc 4299050
>gi|29802395|ref|NT_011651.13|HsX_11808 Homo sapiens chromosome X genomic
contig
Length = 31236858
Score = 38.2 bits (19), Expect = 7.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 537 cctggaacttgccctggcc 555
|||||||||||||||||||
Sbjct: 7470527 cctggaacttgccctggcc 7470509
>gi|29796698|ref|NT_023133.11|Hs5_23289 Homo sapiens chromosome 5 genomic
contig
Length = 21842058
Score = 38.2 bits (19), Expect = 7.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 721 caggctctggggctggtga 739
|||||||||||||||||||
Sbjct: 17467689 caggctctggggctggtga 17467707
>gi|29793768|ref|NT_005999.15|Hs3_6156 Homo sapiens chromosome 3 genomic
contig
Length = 14946736
Score = 38.2 bits (19), Expect = 7.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 474 tgagattgcagccttccct 492
|||||||||||||||||||
Sbjct: 12779314 tgagattgcagccttccct 12779296
>gi|29807292|ref|NT_011520.9|Hs22_11677 Homo sapiens chromosome 22 genomic
contig
Length = 23178213
Score = 38.2 bits (19), Expect = 7.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 25 cctggggctgatcctccag 43
|||||||||||||||||||
Sbjct: 2689966 cctggggctgatcctccag 2689984
>gi|29806588|ref|NT_011519.10|Hs22_11676 Homo sapiens chromosome 22 genomic
contig
Length = 3661581
Score = 38.2 bits (19), Expect = 7.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 740 accatgctgtggcccagaa 758
|||||||||||||||||||
Sbjct: 3227472 accatgctgtggcccagaa 3227454
>gi|29806340|ref|NT_011515.10|Hs21_11672 Homo sapiens chromosome 21 genomic
contig
Length = 3432633
Score = 38.2 bits (19), Expect = 7.9
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 798 ggcccaggagatcctgccccaggctcc 824
||||||||| | |||||||||||||||
Sbjct: 2675874 ggcccaggacagcctgccccaggctcc 2675900
>gi|29791397|ref|NT_022327.12|Hs2_22483 Homo sapiens chromosome 2 genomic
contig
Length = 1217721
Score = 38.2 bits (19), Expect = 7.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 707 gtgggatgcaggcccaggc 725
|||||||||||||||||||
Sbjct: 469699 gtgggatgcaggcccaggc 469681
>gi|29823165|ref|NT_010879.13|Hs18_11036 Homo sapiens chromosome 18 genomic
contig
Length = 2246708
Score = 38.2 bits (19), Expect = 7.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 713 tgcaggcccaggctctggg 731
|||||||||||||||||||
Sbjct: 1478544 tgcaggcccaggctctggg 1478562
>gi|29810036|ref|NT_037887.3|Hs16_37891 Homo sapiens chromosome 16 genomic
contig
Length = 2643859
Score = 38.2 bits (19), Expect = 7.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 126 cctgcgcccgccgcgccgc 144
|||||||||||||||||||
Sbjct: 415797 cctgcgcccgccgcgccgc 415815
>gi|29802090|ref|NT_010274.15|Hs15_10431 Homo sapiens chromosome 15 genomic
contig
Length = 13507286
Score = 38.2 bits (19), Expect = 7.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 11 gcagtttgcaaaggcctgg 29
|||||||||||||||||||
Sbjct: 6057132 gcagtttgcaaaggcctgg 6057150
>gi|29736559|ref|NT_026437.10|Hs14_26604 Homo sapiens chromosome 14 genomic
contig
Length = 87191216
Score = 38.2 bits (19), Expect = 7.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 117 ggcgagcgccctgcgcccg 135
|||||||||||||||||||
Sbjct: 37184967 ggcgagcgccctgcgcccg 37184949
Database: Homo Sapiens Gene(masked sequence)
Posted date: Oct 8, 2003 7:48 PM
Number of letters in database: 2,866,452,029
Number of sequences in database: 545
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 865
length of database: 2,866,452,029
effective HSP length: 21
effective length of query: 844
effective length of database: 2,866,440,584
effective search space: 2419275852896
effective search space used: 2419275852896
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)