Animal-Genome cDNA Clone 20030531/20030531C-0/20030531C-000079


Query

>20030531C-000079 (20030531C-000079) 20030531C-000079
CTGCTCCCCT AAAGGCAGCT TTGACTGCGT GGGGGTATTT CCAGCTTTGT
GGCTTTCACT TCCACTTCTC CCAGGTGGGC GGAGTGGCCT CCTGTGGACG
AATCAGATTG CTCCTCCGCC CCAACTTCAG GAGGCGAGCC CGGGGCTTGG
GGTCCCAGAC GTGCCGCCGC CGCCGCCACA GCAGCATCCG CAGCAGCAGC
AGCAGCAGGA CGACTAGGAA AGACCCCAGG CCAGAACCAT GGAGGACCAG
CGCGACCTCA TCTCCAACCA TGAGCAGCTG CCCATGCTGG GCCAGCGCCC
CGGGGCCCCC GAGAGCAAGT GCAGCCGTGG AGCTCTGTAC ACAGGCTTTT
CTGTCCTGGT GGCTCTGCTC CTGGCTGGCC AGGCCACCAC CGCCTACTTC
CTGTACCAGC AGCAGGGCCG GCTGGACAAG CTGACGGTCA CCTCTCAGAA
CTTGCAGCTG GAGAGCCTGC GGATGAAGCT TCCCAAGCCC TCCAAGCCTT
TGAGCAAGAT GCGGGTTTCC GCCCCCATGC TGATGCAGGC CCTGCCCATG
GAAGGCCCGG AGCCTATGCG CAACGCCACC AAGTACGGCA ACATGACCCA
GGACCACGTG ATGCACCTGC TCCTGAAGTC TGACCCCCTG GGAGTGTACC
CGAAGCTGAA GGGGAGCCTC CCAGAAAACC TGAAGCACCT CAAGAACACC
ATGGACGGTG TGAACTGGAA GCTCTTTGAG AACTGGCTGC GTCAGTGGCT
CTTGTTTGAA ATGAGCAAGA ACTCGCTGGA GGAGACACCC TTTGAGGTTC
CGCCAAAAGA CCCACTGGAG ACGGAGGACC TGTCGTCCGG GCTGGGCGTG
ACCAAGCAGG ATCTCGGCCA AGTCATCCTG TAAGAGCAGC AGACGCCAGC
CCCCAGCCCT GCGTGGCCAC AGCTTGCCTG CCCCCCACCC TCCCTGCCGC
CCCCACCTGC ACCTCATCCC ATGGGCCTCT GGCACCTGGC TCGCCGTCCT
CCCTGGACAC CTCACGTCTC TTCAGAAGGC CAAGGATGAA CGACACAGGG
AGGCCCTGCT GCCCACAGCT CCATCCGCTA GCAGGGACAC AGGGCCCCCG
GGGACAGCCC GTGAGCGGGG CTGGTGCCAC TCCTGACACC TTGAGCTCCA
CATGGCG

Search to RefSeq (Human) database

Query= 20030531C-000079 (20030531C-000079) 20030531C-000079
         (1157 letters)

Database: RefSeq (Homo Sapiens/Amino Acid)
           19,244 sequences; 10,046,356 total letters

Searching..................................................done

                                                                               Score     E
            Sequences producing significant alignments:                        (bits)  Value

Alignment   gi|10835071|ref|NP_004346.1| (NM_004355) invariant gamma chain;...   306  1e-83
Alignment   gi|4504865|ref|NP_003676.1| (NM_003685) KH-type splicing regula...    39  0.007
Alignment   gi|11386161|ref|NP_001843.1| (NM_001852) alpha 2 type IX collag...    39  0.009
Alignment   gi|13994236|ref|NP_114096.1| (NM_031890) cat eye syndrome chrom...    37  0.026
Alignment   gi|4502955|ref|NP_000486.1| (NM_000495) alpha 5 type IV collage...    36  0.045
Alignment   gi|15451769|ref|NP_150245.1| (NM_033242) promyelocytic leukemia...    35  0.10
Alignment   gi|18375628|ref|NP_004629.2| (NM_004638) HLA-B associated trans...    35  0.13
Alignment   gi|15890088|ref|NP_203700.1| (NM_033381) alpha 5 type IV collag...    35  0.13
Alignment   gi|15890086|ref|NP_203699.1| (NM_033380) alpha 5 type IV collag...    35  0.13
Alignment   gi|14149827|ref|NP_115528.1| (NM_032152) PRAM-1 protein; PML-RA...    34  0.17


>gi|10835071|ref|NP_004346.1| (NM_004355) invariant gamma chain;
           HLA-DR-gamma; Ia-associated invariant chain; gamma chain
           of class II antigens [Homo sapiens]
          Length = 232

 Score =  306 bits (785), Expect = 1e-83
 Identities = 153/214 (71%), Positives = 176/214 (81%), Gaps = 2/214 (0%)
 Frame = +2

Query: 239 MEDQRDLISNHEQLPMLGQRPGAPESKCSRGALYTGFSVLVALLLAGQATTAYFLYQQQG 418
           M+DQRDLISN+EQLPMLG+RPGAPESKCSRGALYTGFS+LV LLLAGQATTAYFLYQQQG
Sbjct: 17  MDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLLLAGQATTAYFLYQQQG 76

Query: 419 RLDKLTVTSQNLQLEXXXXXXXXXXXXXXXXXVSAPMLMQALPMEG-PE-PMRNATKYGN 592
           RLDKLTVTSQNLQLE                 ++ P+LMQALPM   P+ PM+NATKYGN
Sbjct: 77  RLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPMGALPQGPMQNATKYGN 136

Query: 593 MTQDHVMHLLLKSDPLGVYPKLKGSLPENLKHLKNTMDGVNWKLFENWLRQWLLFEMSKN 772
           MT+DHVMHLL  +DPL VYP LKGS PENL+HLKNTM+ ++WK+FE+W+  WLLFEMS++
Sbjct: 137 MTEDHVMHLLQNADPLKVYPPLKGSFPENLRHLKNTMETIDWKVFESWMHHWLLFEMSRH 196

Query: 773 SLEETPFEVPPKDPLETEDLSSGLGVTKQDLGQV 874
           SLE+ P + PPK+ LE ED SSGLGVTKQDLG V
Sbjct: 197 SLEQKPTDAPPKESLELEDPSSGLGVTKQDLGPV 230



>gi|4504865|ref|NP_003676.1| (NM_003685) KH-type splicing regulatory
           protein (FUSE binding protein 2); KH-type splicing
           regulatory protein (FUSE-binding protein 2) [Homo
           sapiens]
          Length = 711

 Score = 38.9 bits (89), Expect = 0.007
 Identities = 34/123 (27%), Positives = 44/123 (35%), Gaps = 6/123 (4%)
 Frame = +1

Query: 352 CPGGSAPGWPGHHRLLPVPAAGPAGQADGHLSELAAGEPADEA-----SQALQAFEQDAG 516
           CP G  PG PG    +     GP  Q        A G P  +            ++  A
Sbjct: 500 CPVGPGPGGPGPAGPMGPFNPGPFNQGPPGAPPHAGGPPPHQYPPQGWGNTYPQWQPPAP 559

Query: 517 FRPHADAGPAHGRPGAYAQRHQ-VRQHDPGPRDAPAPEV*PPGSVPEAEGEPPRKPEAPQ 693
             P   A  A     A+A  +    Q  PGP   PAP      + P A+GEPP+ P   Q
Sbjct: 560 HDPSKAAAAAADPNAAWAAYYSHYYQQPPGPVPGPAPAP----AAPPAQGEPPQPPPTGQ 615

Query: 694 EHH 702
             +
Sbjct: 616 SDY 618



>gi|11386161|ref|NP_001843.1| (NM_001852) alpha 2 type IX collagen;
           collagen IX, alpha-2 polypeptide; epiphyseal dysplasia,
           multiple 2 [Homo sapiens]
          Length = 689

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 34/106 (32%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
 Frame = +1

Query: 370 PGWPGHHRLLPVPAAGPAGQADGHLSELAAGEPADEASQALQAFEQDAGFR----PHADA 537
           PG PGH  L  VP  G  G   G       G+  +   Q L  F    G      P  +
Sbjct: 327 PGSPGHQGLAGVP--GQPGTKGG------PGDQGEPGPQGLPGFSGPPGKEGEPGPRGEI 378

Query: 538 GP--AHGRPGAYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEP 669
           GP    G+ G   +R  V Q  P  R  P  E  PPG +P  +G P
Sbjct: 379 GPQGIMGQKGDQGERGPVGQPGPQGRQGPKGEQGPPG-IPGPQGLP 423



>gi|13994236|ref|NP_114096.1| (NM_031890) cat eye syndrome
           chromosome region, candidate 6 [Homo sapiens]
          Length = 578

 Score = 37.0 bits (84), Expect = 0.026
 Identities = 27/85 (31%), Positives = 35/85 (40%)
 Frame = -1

Query: 842 ARTTGPPSPVGLLAEPQRVSPPASSCSFQXXXXXXXXXXXXXXSHRPWCS*GASGFLGGS 663
           A   GPP+ VG  A P   +P A S S                +   +    A+G +GG
Sbjct: 93  AALLGPPAQVGAPAGP---APVAFSSSAATSSSTSTPTSSCSMTAADFGGGAAAGAVGGP 149

Query: 662 PSASGTLPGGQTSGAGASRGPGSCC 588
            S S    GG  +G+GAS  P  CC
Sbjct: 150 GSRSAGGAGGTGTGSGASCCPCCCC 174



>gi|4502955|ref|NP_000486.1| (NM_000495) alpha 5 type IV collagen
            isoform 1, precursor; collagen IV, alpha-5 polypeptide;
            collagen of basement membrane, alpha-5 chain [Homo
            sapiens]
          Length = 1685

 Score = 36.2 bits (82), Expect = 0.045
 Identities = 37/125 (29%), Positives = 43/125 (33%), Gaps = 14/125 (11%)
 Frame = +1

Query: 358  GGSAPGWPGHHRLLPVPAA----GPAGQADGHLSELAAGEPADEASQALQAFEQDAGFRP 525
            GG  PG PG       P      GPAGQ  G   +   G P       L   + D G  P
Sbjct: 1153 GGGHPGQPGPPGEKGKPGQDGIPGPAGQK-GEPGQPGFGNPGPPGLPGLSGQKGDGGL-P 1210

Query: 526  HADAGPA----------HGRPGAYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEPPR 675
                 P           HG PG         Q  PGP  +P P +  P   P  +G PP
Sbjct: 1211 GIPGNPGLPGPKGEPGFHGFPGV--------QGPPGPPGSPGPALEGPKGNPGPQG-PPG 1261

Query: 676  KPEAP 690
            +P  P
Sbjct: 1262 RPGLP 1266



>gi|15451769|ref|NP_150245.1| (NM_033242) promyelocytic leukemia
           protein isoform 3; promyelocytic leukemia, inducer of;
           tripartite motif protein TRIM19 [Homo sapiens]
          Length = 824

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
 Frame = +1

Query: 412 AGPAGQADGHLSELAAGEPADEASQALQAFEQDAGFRPHADAGPAHGRPGAYAQRHQVRQ 591
           A  AG+A+  +  +++ E +D  +  ++  E        A + PAH  P     R Q
Sbjct: 546 ASGAGEAEERVVVISSSEDSDAENSCMEPMETAEPQSSPAHSSPAHSSPVQSLLRAQGAS 605

Query: 592 -------HDPG-PRDAPAPEV*PPGSVPEAEGEPPRKPEAPQEHHG 705
                  H P  P   PA +   P + P +E  PP   E P  H G
Sbjct: 606 SLPCGTYHPPAWPPHQPAEQAATPDAEPHSE--PPDHQERPAVHRG 649



>gi|18375628|ref|NP_004629.2| (NM_004638) HLA-B associated
           transcript-2 isoform b; HLA-B associated transcript-2;
           large proline-rich protein BAT2 [Homo sapiens]
          Length = 2145

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = +1

Query: 562 AYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEPPRKPEAPQE 696
           A+A+  +  + +PGP  AP P + PPG  P+  G PP KP AP++
Sbjct: 391 AWAETSRPPETEPGP-PAPKPPL-PPGDYPD-RGGPPCKPPAPED 432


 Score = 32.0 bits (71), Expect = 0.85
 Identities = 13/29 (44%), Positives = 16/29 (54%)
 Frame = +1

Query: 604 PRDAPAPEV*PPGSVPEAEGEPPRKPEAP 690
           P++ PAP   PP S P  E EP    +AP
Sbjct: 513 PKELPAPPAPPPASAPTPEKEPEEPAQAP 541



>gi|15890088|ref|NP_203700.1| (NM_033381) alpha 5 type IV collagen
            isoform 3, precursor; collagen IV, alpha-5 polypeptide;
            collagen of basement membrane, alpha-5 chain [Homo
            sapiens]
          Length = 1688

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 35/120 (29%), Positives = 40/120 (33%), Gaps = 14/120 (11%)
 Frame = +1

Query: 358  GGSAPGWPGHHRLLPVPAA----GPAGQADGHLSELAAGEPADEASQALQAFEQDAGFRP 525
            GG  PG PG       P      GPAGQ  G   +   G P       L   + D G  P
Sbjct: 1153 GGGHPGQPGPPGEKGKPGQDGIPGPAGQK-GEPGQPGFGNPGPPGLPGLSGQKGDGGL-P 1210

Query: 526  HADAGPA----------HGRPGAYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEPPR 675
                 P           HG PG         Q  PGP  +P P +  P   P  +G P R
Sbjct: 1211 GIPGNPGLPGPKGEPGFHGFPGV--------QGPPGPPGSPGPALEGPKGNPGPQGPPGR 1262



>gi|15890086|ref|NP_203699.1| (NM_033380) alpha 5 type IV collagen
            isoform 2, precursor; collagen IV, alpha-5 polypeptide;
            collagen of basement membrane, alpha-5 chain [Homo
            sapiens]
          Length = 1691

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 35/120 (29%), Positives = 40/120 (33%), Gaps = 14/120 (11%)
 Frame = +1

Query: 358  GGSAPGWPGHHRLLPVPAA----GPAGQADGHLSELAAGEPADEASQALQAFEQDAGFRP 525
            GG  PG PG       P      GPAGQ  G   +   G P       L   + D G  P
Sbjct: 1153 GGGHPGQPGPPGEKGKPGQDGIPGPAGQK-GEPGQPGFGNPGPPGLPGLSGQKGDGGL-P 1210

Query: 526  HADAGPA----------HGRPGAYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEPPR 675
                 P           HG PG         Q  PGP  +P P +  P   P  +G P R
Sbjct: 1211 GIPGNPGLPGPKGEPGFHGFPGV--------QGPPGPPGSPGPALEGPKGNPGPQGPPGR 1262



>gi|14149827|ref|NP_115528.1| (NM_032152) PRAM-1 protein; PML-RARA
            target gene encoding an Adaptor Molecule-1 [Homo sapiens]
          Length = 718

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 34/128 (26%), Positives = 43/128 (33%)
 Frame = +1

Query: 649  PEAEGEPPRKPEAPQEHHGRCXXXXXXXXXXSVALV*NEQELAGGDTL*GSAKRPTGDGG 828
            PE  G+ PRKP  P                 +VA   +   L+ G    G+A  P    G
Sbjct: 420  PEFFGDLPRKPPLPSS-------ASESSLPAAVAGFSSRHPLSPGF---GAAGTPRWRSG 469

Query: 829  PVVRAGRDQAGSRPSHPVRAADASPQPCVXXXXXXXXXXXXXXXXSSHGPLAPGSPSSLD 1008
             +V +G  + G RPSHP R     P                      H P  P  P
Sbjct: 470  GLVHSGGARPGLRPSHPPRRRPLPP-----------------ASSLGHPPAKPPLPPGPV 512

Query: 1009 TSRLFRRP 1032
              + FRRP
Sbjct: 513  DMQSFRRP 520


  Database: RefSeq (Homo Sapiens/Amino Acid)
    Posted date:  Jul 1, 2003  6:07 AM
  Number of letters in database: 10,046,356
  Number of sequences in database:  19,244

Lambda     K      H
   0.317    0.137    0.453

Gapped
Lambda     K      H
   0.267   0.0410    0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26928069
Number of Sequences: 19244
Number of extensions: 755109
Number of successful extensions: 5214
Number of sequences better than 10.0: 139
Number of HSP's better than 10.0 without gapping: 2687
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 4670
length of query: 385
length of database: 10,046,356
effective HSP length: 41
effective length of query: 344
effective length of database: 9,257,352
effective search space: 3184529088
effective search space used: 3184529088
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)

Search to RefSeq (Mouse) database

Query= 20030531C-000079 (20030531C-000079) 20030531C-000079
         (1157 letters)

Database: RefSeq (Mus Musculus/Amino Acid)
           15,330 sequences; 7,155,815 total letters

Searching..................................................done

                                                                               Score     E
            Sequences producing significant alignments:                        (bits)  Value

Alignment   gi|29789020|ref|NP_034675.1| (NM_010545) Ia-associated invarian...   296  1e-80
Alignment   gi|31541852|ref|NP_077211.3| (NM_024249) RIKEN cDNA 1810073N04 ...    38  0.008
Alignment   gi|6680978|ref|NP_031767.1| (NM_007741) procollagen, type IX, a...    36  0.032
Alignment   gi|6754572|ref|NP_034861.1| (NM_010731) leukemia/lymphoma relat...    35  0.092
Alignment   gi|6680397|ref|NP_032378.1| (NM_008352) interleukin 12b; IL-12 ...    35  0.092
Alignment   gi|7305533|ref|NP_038708.1| (NM_013680) synapsin I [Mus musculus]     34  0.12
Alignment   gi|10800150|ref|NP_038679.2| (NM_013651) splicing factor 3a, su...    34  0.12
Alignment   gi|15808996|ref|NP_291044.1| (NM_033566) SWI/SNF related, matri...    34  0.16
Alignment   gi|13928676|ref|NP_113687.1| (NM_031499) proline rich protein 2...    33  0.27
Alignment   gi|7305243|ref|NP_038617.1| (NM_013589) latent transforming gro...    33  0.27


>gi|29789020|ref|NP_034675.1| (NM_010545) Ia-associated invariant
           chain; dinucleotide microsatellite; MHC class
           II-associated invariant chain; class II-associated
           invariant chain peptide; HLA-DR-GAMMA;
           histocompatibility: class II antigens, gamma chain of;
           invariant polypeptide of major histocompatibility
           complex, class II antigen-associated [Mus musculus]
          Length = 215

 Score =  296 bits (759), Expect = 1e-80
 Identities = 151/217 (69%), Positives = 175/217 (80%), Gaps = 3/217 (1%)
 Frame = +2

Query: 239 MEDQRDLISNHEQLPMLGQRPGAPESKCSRGALYTGFSVLVALLLAGQATTAYFLYQQQG 418
           M+DQRDLISNHEQLP+LG RP  PE +CSRGALYTG SVLVALLLAGQATTAYFLYQQQG
Sbjct: 1   MDDQRDLISNHEQLPILGNRPREPE-RCSRGALYTGVSVLVALLLAGQATTAYFLYQQQG 59

Query: 419 RLDKLTVTSQNLQLEXXXXXXXXXXXXXXXXXVSAPMLMQALPMEGP--EPMRNATKYGN 592
           RLDKLT+TSQNLQLE                 ++ P+LM+ + M+     P++N TKYGN
Sbjct: 60  RLDKLTITSQNLQLESLRMKLPKSAKPVSQMRMATPLLMRPMSMDNMLLGPVKNVTKYGN 119

Query: 593 MTQDHVMHLLLKSDPLGVYPKLKGSLPENLKHLKNTMDGVNWKLFENWLRQWLLFEMSKN 772
           MTQDHVMHLL +S PL  YP+LKG+ PENLKHLKN+MDGVNWK+FE+W++QWLLFEMSKN
Sbjct: 120 MTQDHVMHLLTRSGPL-EYPQLKGTFPENLKHLKNSMDGVNWKIFESWMKQWLLFEMSKN 178

Query: 773 SLEE-TPFEVPPKDPLETEDLSSGLGVTKQDLGQVIL 880
           SLEE  P E PPK+PL+ EDLSSGLGVT+Q+LGQV L
Sbjct: 179 SLEEKKPTEAPPKEPLDMEDLSSGLGVTRQELGQVTL 215



>gi|31541852|ref|NP_077211.3| (NM_024249) RIKEN cDNA 1810073N04 [Mus
            musculus]
          Length = 1090

 Score = 38.1 bits (87), Expect = 0.008
 Identities = 48/197 (24%), Positives = 67/197 (33%), Gaps = 13/197 (6%)
 Frame = +1

Query: 355  PGGSAPGWPGHHRLLPVPAAG---PAGQADGHLSELAAGEPADEASQALQAFEQDAGFRP 525
            PGG AP        L  P  G   P G+A  H   +   +   +  Q  +  E+
Sbjct: 466  PGGEAPKEKQEAAQLDRPGQGIAVPMGEAHRHEPPIPHDKVVVDEGQDQEGPEEKKPPPR 525

Query: 526  HADAGPAHGR-------PGAYAQRHQVRQHDPGPRDAPA---PEV*PPGSVPEAEGEPPR 675
              D G   GR       P +  ++ +  +   G R        E   P  VPEA G+PP
Sbjct: 526  LPDEGDPAGRGQGAPPLPESEKEKQEPERGGEGKRPGQVLAVGETEHPQKVPEANGQPPV 585

Query: 676  KPEAPQEHHGRCXXXXXXXXXXSVALV*NEQELAGGDTL*GSAKRPTGDGGPVVRAGRDQ 855
            +P       G            SV L    + LA  D    + K       PV  A
Sbjct: 586  QPRKEDSRPGNRDPQPAAQARDSVEL----KALAADDGREPAQKAGGALWKPVESAAESD 641

Query: 856  AGSRPSHPVRAADASPQ 906
            AG +   PV+  +A+ Q
Sbjct: 642  AGGKAGLPVQRPEAAEQ 658



>gi|6680978|ref|NP_031767.1| (NM_007741) procollagen, type IX, alpha
           2 [Mus musculus]
          Length = 688

 Score = 36.2 bits (82), Expect = 0.032
 Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 6/106 (5%)
 Frame = +1

Query: 370 PGWPGHHRLLPVPAAGPAGQADGHLSELAAGEPADEASQALQAFEQDAGFR----PHADA 537
           PG PGH  L  VP  G  G   G       G+  +   Q L       G      P  +
Sbjct: 326 PGSPGHQGLAGVP--GQPGTKGG------PGDKGEPGQQGLPGVSGPPGKEGEPGPRGEI 377

Query: 538 GP--AHGRPGAYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEP 669
           GP    G+ G   +R  V Q  P  R  P  E  PPG +P  +G P
Sbjct: 378 GPQGIMGQKGDQGERGPVGQPGPQGRQGPKGEQGPPG-IPGPQGLP 422



>gi|6754572|ref|NP_034861.1| (NM_010731) leukemia/lymphoma related
           factor [Mus musculus]
          Length = 565

 Score = 34.7 bits (78), Expect = 0.092
 Identities = 26/75 (34%), Positives = 31/75 (40%), Gaps = 7/75 (9%)
 Frame = +1

Query: 358 GGSAPG-WPGHHR------LLPVPAAGPAGQADGHLSELAAGEPADEASQALQAFEQDAG 516
           G S PG WP          L P P A PA   +GH     AG   +EA+ AL     + G
Sbjct: 231 GDSTPGLWPERDEDAPPGGLFPPPTAPPATTQNGHYGRAGAGTGEEEAA-ALSEAAPEPG 289

Query: 517 FRPHADAGPAHGRPG 561
             P   +G A G  G
Sbjct: 290 DSPGFLSGAAEGEDG 304



>gi|6680397|ref|NP_032378.1| (NM_008352) interleukin 12b; IL-12 p40
           [Mus musculus]
          Length = 335

 Score = 34.7 bits (78), Expect = 0.092
 Identities = 26/101 (25%), Positives = 45/101 (43%), Gaps = 10/101 (9%)
 Frame = +2

Query: 515 VSAPMLMQALPMEGPEPMRNATKYGNMTQDHVMHLLLKSDPLGVYPKLKGSLPENL--KH 688
           V+ P   + LP+E     R   KY N +    +  ++K DP           P+NL  K
Sbjct: 195 VTCPTAEETLPIELALEARQQNKYENYSTSFFIRDIIKPDP-----------PKNLQMKP 243

Query: 689 LKNTMDGVNWKLFENW--------LRQWLLFEMSKNSLEET 787
           LKN+   V+W+  ++W        L+ ++  +  K  ++ET
Sbjct: 244 LKNSQVEVSWEYPDSWSTPHSYFSLKFFVRIQRKKEKMKET 284



>gi|7305533|ref|NP_038708.1| (NM_013680) synapsin I [Mus musculus]
          Length = 670

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 43/176 (24%), Positives = 53/176 (29%), Gaps = 2/176 (1%)
 Frame = +1

Query: 358 GGSAPGWPGHHRLLPVPAAGPAGQADGHLSELA--AGEPADEASQALQAFEQDAGFRPHA 531
           GG     PG  R  P     P  Q   HLS L   AG P  +   +  A  Q +
Sbjct: 465 GGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTAAPQQSA----- 519

Query: 532 DAGPAHGRPGAYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEPPRKPEAPQEHHGRC 711
               +   P    Q  Q R    GP         PP + P A   P R+  APQ
Sbjct: 520 ----SQATPVTQGQGRQSRPVAGGPGA-------PPAARPPASPSPQRQAGAPQATRQAS 568

Query: 712 XXXXXXXXXXSVALV*NEQELAGGDTL*GSAKRPTGDGGPVVRAGRDQAGSRPSHP 879
                                 GG    G  ++P G  GP  +A +   G R   P
Sbjct: 569 ISGPAPTKASGAP--------PGGQQRQGPPQKPPGPAGPTRQASQAGPGPRTGPP 616


 Score = 33.5 bits (75), Expect = 0.21
 Identities = 34/116 (29%), Positives = 43/116 (36%), Gaps = 2/116 (1%)
 Frame = +1

Query: 355 PGGSAPGWPGHHRLLPVPAAGPAGQADGHLSELAAGEPADEASQALQAFEQDAGFRPHAD 534
           P    PG P   R    P A P+ Q      +  A +   +AS +  A  + +G  P
Sbjct: 535 PVAGGPGAPPAAR----PPASPSPQR-----QAGAPQATRQASISGPAPTKASGAPPGGQ 585

Query: 535 A--GPAHGRPGAYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEPPRKPEAPQE 696
              GP    PG      Q  Q  PGPR  P     P  S P   G  P KP+  Q+
Sbjct: 586 QRQGPPQKPPGPAGPTRQASQAGPGPRTGPPTTQQPRPSGPGPAGR-PAKPQLAQK 640


 Score = 28.9 bits (63), Expect = 5.1
 Identities = 45/184 (24%), Positives = 62/184 (33%), Gaps = 4/184 (2%)
 Frame = +1

Query: 364 SAPGWPGHHRLLPVPAAGPAGQADGHLSELAAGEPADEASQALQAFEQDAGFRPHADAGP 543
           ++PG  G H     P A   G+     S+  AG PA +              RP    GP
Sbjct: 426 ASPG-RGSHSQSSSPGALTLGR---QTSQQPAGPPAQQ--------------RPPPQGGP 467

Query: 544 AHGRPGAYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEPPRKPEAPQEHHGRCXXXX 723
               PG   Q   ++Q  P         + PP   P  +   P    APQ+   +
Sbjct: 468 PQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQ-RLPSPTAAPQQSASQATPVT 526

Query: 724 XXXXXXSVALV*NEQELAGGDTL*GSAKRPTGDGGPVVRAGRDQAGSRPS----HPVRAA 891
                 S       + +AGG      A RP     P  +AG  QA  + S     P +A+
Sbjct: 527 QGQGRQS-------RPVAGGPGA-PPAARPPASPSPQRQAGAPQATRQASISGPAPTKAS 578

Query: 892 DASP 903
            A P
Sbjct: 579 GAPP 582



>gi|10800150|ref|NP_038679.2| (NM_013651) splicing factor 3a,
           subunit 2; spliceosomal protein gene 62; splicing factor
           3a, subunit 2, 66kD [Mus musculus]
          Length = 475

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 32/109 (29%), Positives = 37/109 (33%), Gaps = 2/109 (1%)
 Frame = +1

Query: 361 GSAPGWPGHHRLLPVPAAGPAGQADGHLSELAAGEPADEASQ--ALQAFEQDAGFRPHAD 534
           G  P  PG H   P P+AG   QA G      A  P        A     Q  G  P
Sbjct: 367 GVHPPAPGVH---PPPSAGVHPQAPGVHPPAPAVHPQAPGVHPPAPGIHPQAPGVHPQPP 423

Query: 535 AGPAHGRPGAYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEPPRKP 681
            G     PG + Q   V   +PG   AP P +  P    +  G  P  P
Sbjct: 424 PGVHPAAPGVHPQPPGVHPSNPGVHPAPMPPMLRPPLPSDGPGNMPPPP 472



>gi|15808996|ref|NP_291044.1| (NM_033566) SWI/SNF related, matrix
           associated, actin dependent regulator of chromatin,
           subfamily f, member 1 [Mus musculus]
          Length = 1902

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 27/102 (26%), Positives = 41/102 (39%), Gaps = 6/102 (5%)
 Frame = +1

Query: 406 PAAGPAGQADGHLSELAAGEPADEASQALQAFEQDA-GFRPHADAGPAHGR--PGAYAQR 576
           P +GP  Q  G+  +    +        +Q   Q A G   +A   P +G+  P AY Q+
Sbjct: 24  PPSGPQ-QGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGSLSYAQQIPPYGQQGPSAYGQQ 82

Query: 577 HQV---RQHDPGPRDAPAPEV*PPGSVPEAEGEPPRKPEAPQ 693
            Q     Q  P P+  P     PP   P A+    ++P+  Q
Sbjct: 83  GQTPYYNQQSPHPQQQPPYAQQPPSQTPHAQPSYQQQPQTQQ 124



>gi|13928676|ref|NP_113687.1| (NM_031499) proline rich protein 2
           [Mus musculus]
          Length = 317

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 37/124 (29%), Positives = 41/124 (32%), Gaps = 12/124 (9%)
 Frame = +1

Query: 355 PGGSAP----GWPGHHRLLPVPAAGPAGQADGHLSELAAGEPADEASQAL-QAFEQDAGF 519
           PGG  P    G P      P P  GP   A  HL       P     Q   Q+     G
Sbjct: 153 PGGPQPRPPQGPPPPAGPQPRPPQGPPPPAGPHLRPTQGPPPTGGPQQRYPQSPPPPGGP 212

Query: 520 RPHADAGPA-----HGRP--GAYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEPPRK 678
           +P    GP      H RP  G      Q R    GP     P+  PP   P   G  PR
Sbjct: 213 QPRPPQGPPPPGGPHPRPTQGPPPTGPQPRPTQ-GPPPTGGPQQRPPQGPPPPGGPQPRP 271

Query: 679 PEAP 690
           P+ P
Sbjct: 272 PQGP 275


 Score = 28.1 bits (61), Expect = 8.6
 Identities = 31/112 (27%), Positives = 35/112 (30%)
 Frame = +1

Query: 355 PGGSAPGWPGHHRLLPVPAAGPAGQADGHLSELAAGEPADEASQALQAFEQDAGFRPHAD 534
           PGG  P  P      P P  GP  +            P     +  Q      G +P
Sbjct: 83  PGGPQPRPPQG----PPPPGGPQPRPPQ-----GPPPPGGPQPRPPQGPPPPGGPQPRPP 133

Query: 535 AGPAHGRPGAYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEPPRKPEAP 690
            GP    PG   QR       P P   P P   PP   P   G  PR P+ P
Sbjct: 134 QGPPP--PGGPQQRPP---QGPPPPGGPQPR--PPQGPPPPAGPQPRPPQGP 178



>gi|7305243|ref|NP_038617.1| (NM_013589) latent transforming growth
           factor beta binding protein 2 [Mus musculus]
          Length = 1833

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 35/138 (25%), Positives = 47/138 (33%), Gaps = 19/138 (13%)
 Frame = +1

Query: 349 FCPGGSAPGWPGHHRLLPVPAAGPAGQADGHLSELAAGEPADEASQALQAFEQDAGFRPH 528
           +CP  S   +   H  +P P   PAG+   H + L    P  +++  L    Q A   P
Sbjct: 422 WCPANSTGKFC--HLPVPQPDREPAGRGSRHRTLLEG--PLKQSTFTLPLSNQLASVNPS 477

Query: 529 ADAGPAHGRPGAYAQRHQVRQ-------------------HDPGPRDAPAPEV*PPGSVP 651
                 H  P A  Q HQV +                   H P      +P      S+P
Sbjct: 478 LVKVQIHHPPEASVQIHQVARVRGELDPVLEDNSVETRASHRPHGNLGHSPWA--SNSIP 535

Query: 652 EAEGEPPRKPEAPQEHHG 705
              GE PR P     H+G
Sbjct: 536 ARAGEAPRPPPVLSRHYG 553


  Database: RefSeq (Mus Musculus/Amino Acid)
    Posted date:  Jul 1, 2003  6:07 AM
  Number of letters in database: 7,155,815
  Number of sequences in database:  15,330

Lambda     K      H
   0.317    0.137    0.453

Gapped
Lambda     K      H
   0.267   0.0410    0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18640101
Number of Sequences: 15330
Number of extensions: 499334
Number of successful extensions: 3155
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 1699
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 2733
length of query: 385
length of database: 7,155,815
effective HSP length: 41
effective length of query: 344
effective length of database: 6,527,285
effective search space: 2245386040
effective search space used: 2245386040
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)