Search to RefSeq (Human) database
Query= 20030531C-000079 (20030531C-000079) 20030531C-000079
(1157 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,244 sequences; 10,046,356 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|10835071|ref|NP_004346.1| (NM_004355) invariant gamma chain;... 306 1e-83
Alignment gi|4504865|ref|NP_003676.1| (NM_003685) KH-type splicing regula... 39 0.007
Alignment gi|11386161|ref|NP_001843.1| (NM_001852) alpha 2 type IX collag... 39 0.009
Alignment gi|13994236|ref|NP_114096.1| (NM_031890) cat eye syndrome chrom... 37 0.026
Alignment gi|4502955|ref|NP_000486.1| (NM_000495) alpha 5 type IV collage... 36 0.045
Alignment gi|15451769|ref|NP_150245.1| (NM_033242) promyelocytic leukemia... 35 0.10
Alignment gi|18375628|ref|NP_004629.2| (NM_004638) HLA-B associated trans... 35 0.13
Alignment gi|15890088|ref|NP_203700.1| (NM_033381) alpha 5 type IV collag... 35 0.13
Alignment gi|15890086|ref|NP_203699.1| (NM_033380) alpha 5 type IV collag... 35 0.13
Alignment gi|14149827|ref|NP_115528.1| (NM_032152) PRAM-1 protein; PML-RA... 34 0.17
>gi|10835071|ref|NP_004346.1| (NM_004355) invariant gamma chain;
HLA-DR-gamma; Ia-associated invariant chain; gamma chain
of class II antigens [Homo sapiens]
Length = 232
Score = 306 bits (785), Expect = 1e-83
Identities = 153/214 (71%), Positives = 176/214 (81%), Gaps = 2/214 (0%)
Frame = +2
Query: 239 MEDQRDLISNHEQLPMLGQRPGAPESKCSRGALYTGFSVLVALLLAGQATTAYFLYQQQG 418
M+DQRDLISN+EQLPMLG+RPGAPESKCSRGALYTGFS+LV LLLAGQATTAYFLYQQQG
Sbjct: 17 MDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLLLAGQATTAYFLYQQQG 76
Query: 419 RLDKLTVTSQNLQLEXXXXXXXXXXXXXXXXXVSAPMLMQALPMEG-PE-PMRNATKYGN 592
RLDKLTVTSQNLQLE ++ P+LMQALPM P+ PM+NATKYGN
Sbjct: 77 RLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPMGALPQGPMQNATKYGN 136
Query: 593 MTQDHVMHLLLKSDPLGVYPKLKGSLPENLKHLKNTMDGVNWKLFENWLRQWLLFEMSKN 772
MT+DHVMHLL +DPL VYP LKGS PENL+HLKNTM+ ++WK+FE+W+ WLLFEMS++
Sbjct: 137 MTEDHVMHLLQNADPLKVYPPLKGSFPENLRHLKNTMETIDWKVFESWMHHWLLFEMSRH 196
Query: 773 SLEETPFEVPPKDPLETEDLSSGLGVTKQDLGQV 874
SLE+ P + PPK+ LE ED SSGLGVTKQDLG V
Sbjct: 197 SLEQKPTDAPPKESLELEDPSSGLGVTKQDLGPV 230
>gi|4504865|ref|NP_003676.1| (NM_003685) KH-type splicing regulatory
protein (FUSE binding protein 2); KH-type splicing
regulatory protein (FUSE-binding protein 2) [Homo
sapiens]
Length = 711
Score = 38.9 bits (89), Expect = 0.007
Identities = 34/123 (27%), Positives = 44/123 (35%), Gaps = 6/123 (4%)
Frame = +1
Query: 352 CPGGSAPGWPGHHRLLPVPAAGPAGQADGHLSELAAGEPADEA-----SQALQAFEQDAG 516
CP G PG PG + GP Q A G P + ++ A
Sbjct: 500 CPVGPGPGGPGPAGPMGPFNPGPFNQGPPGAPPHAGGPPPHQYPPQGWGNTYPQWQPPAP 559
Query: 517 FRPHADAGPAHGRPGAYAQRHQ-VRQHDPGPRDAPAPEV*PPGSVPEAEGEPPRKPEAPQ 693
P A A A+A + Q PGP PAP + P A+GEPP+ P Q
Sbjct: 560 HDPSKAAAAAADPNAAWAAYYSHYYQQPPGPVPGPAPAP----AAPPAQGEPPQPPPTGQ 615
Query: 694 EHH 702
+
Sbjct: 616 SDY 618
>gi|11386161|ref|NP_001843.1| (NM_001852) alpha 2 type IX collagen;
collagen IX, alpha-2 polypeptide; epiphyseal dysplasia,
multiple 2 [Homo sapiens]
Length = 689
Score = 38.5 bits (88), Expect = 0.009
Identities = 34/106 (32%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
Frame = +1
Query: 370 PGWPGHHRLLPVPAAGPAGQADGHLSELAAGEPADEASQALQAFEQDAGFR----PHADA 537
PG PGH L VP G G G G+ + Q L F G P +
Sbjct: 327 PGSPGHQGLAGVP--GQPGTKGG------PGDQGEPGPQGLPGFSGPPGKEGEPGPRGEI 378
Query: 538 GP--AHGRPGAYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEP 669
GP G+ G +R V Q P R P E PPG +P +G P
Sbjct: 379 GPQGIMGQKGDQGERGPVGQPGPQGRQGPKGEQGPPG-IPGPQGLP 423
>gi|13994236|ref|NP_114096.1| (NM_031890) cat eye syndrome
chromosome region, candidate 6 [Homo sapiens]
Length = 578
Score = 37.0 bits (84), Expect = 0.026
Identities = 27/85 (31%), Positives = 35/85 (40%)
Frame = -1
Query: 842 ARTTGPPSPVGLLAEPQRVSPPASSCSFQXXXXXXXXXXXXXXSHRPWCS*GASGFLGGS 663
A GPP+ VG A P +P A S S + + A+G +GG
Sbjct: 93 AALLGPPAQVGAPAGP---APVAFSSSAATSSSTSTPTSSCSMTAADFGGGAAAGAVGGP 149
Query: 662 PSASGTLPGGQTSGAGASRGPGSCC 588
S S GG +G+GAS P CC
Sbjct: 150 GSRSAGGAGGTGTGSGASCCPCCCC 174
>gi|4502955|ref|NP_000486.1| (NM_000495) alpha 5 type IV collagen
isoform 1, precursor; collagen IV, alpha-5 polypeptide;
collagen of basement membrane, alpha-5 chain [Homo
sapiens]
Length = 1685
Score = 36.2 bits (82), Expect = 0.045
Identities = 37/125 (29%), Positives = 43/125 (33%), Gaps = 14/125 (11%)
Frame = +1
Query: 358 GGSAPGWPGHHRLLPVPAA----GPAGQADGHLSELAAGEPADEASQALQAFEQDAGFRP 525
GG PG PG P GPAGQ G + G P L + D G P
Sbjct: 1153 GGGHPGQPGPPGEKGKPGQDGIPGPAGQK-GEPGQPGFGNPGPPGLPGLSGQKGDGGL-P 1210
Query: 526 HADAGPA----------HGRPGAYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEPPR 675
P HG PG Q PGP +P P + P P +G PP
Sbjct: 1211 GIPGNPGLPGPKGEPGFHGFPGV--------QGPPGPPGSPGPALEGPKGNPGPQG-PPG 1261
Query: 676 KPEAP 690
+P P
Sbjct: 1262 RPGLP 1266
>gi|15451769|ref|NP_150245.1| (NM_033242) promyelocytic leukemia
protein isoform 3; promyelocytic leukemia, inducer of;
tripartite motif protein TRIM19 [Homo sapiens]
Length = 824
Score = 35.0 bits (79), Expect = 0.10
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Frame = +1
Query: 412 AGPAGQADGHLSELAAGEPADEASQALQAFEQDAGFRPHADAGPAHGRPGAYAQRHQVRQ 591
A AG+A+ + +++ E +D + ++ E A + PAH P R Q
Sbjct: 546 ASGAGEAEERVVVISSSEDSDAENSCMEPMETAEPQSSPAHSSPAHSSPVQSLLRAQGAS 605
Query: 592 -------HDPG-PRDAPAPEV*PPGSVPEAEGEPPRKPEAPQEHHG 705
H P P PA + P + P +E PP E P H G
Sbjct: 606 SLPCGTYHPPAWPPHQPAEQAATPDAEPHSE--PPDHQERPAVHRG 649
>gi|18375628|ref|NP_004629.2| (NM_004638) HLA-B associated
transcript-2 isoform b; HLA-B associated transcript-2;
large proline-rich protein BAT2 [Homo sapiens]
Length = 2145
Score = 34.7 bits (78), Expect = 0.13
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +1
Query: 562 AYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEPPRKPEAPQE 696
A+A+ + + +PGP AP P + PPG P+ G PP KP AP++
Sbjct: 391 AWAETSRPPETEPGP-PAPKPPL-PPGDYPD-RGGPPCKPPAPED 432
Score = 32.0 bits (71), Expect = 0.85
Identities = 13/29 (44%), Positives = 16/29 (54%)
Frame = +1
Query: 604 PRDAPAPEV*PPGSVPEAEGEPPRKPEAP 690
P++ PAP PP S P E EP +AP
Sbjct: 513 PKELPAPPAPPPASAPTPEKEPEEPAQAP 541
>gi|15890088|ref|NP_203700.1| (NM_033381) alpha 5 type IV collagen
isoform 3, precursor; collagen IV, alpha-5 polypeptide;
collagen of basement membrane, alpha-5 chain [Homo
sapiens]
Length = 1688
Score = 34.7 bits (78), Expect = 0.13
Identities = 35/120 (29%), Positives = 40/120 (33%), Gaps = 14/120 (11%)
Frame = +1
Query: 358 GGSAPGWPGHHRLLPVPAA----GPAGQADGHLSELAAGEPADEASQALQAFEQDAGFRP 525
GG PG PG P GPAGQ G + G P L + D G P
Sbjct: 1153 GGGHPGQPGPPGEKGKPGQDGIPGPAGQK-GEPGQPGFGNPGPPGLPGLSGQKGDGGL-P 1210
Query: 526 HADAGPA----------HGRPGAYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEPPR 675
P HG PG Q PGP +P P + P P +G P R
Sbjct: 1211 GIPGNPGLPGPKGEPGFHGFPGV--------QGPPGPPGSPGPALEGPKGNPGPQGPPGR 1262
>gi|15890086|ref|NP_203699.1| (NM_033380) alpha 5 type IV collagen
isoform 2, precursor; collagen IV, alpha-5 polypeptide;
collagen of basement membrane, alpha-5 chain [Homo
sapiens]
Length = 1691
Score = 34.7 bits (78), Expect = 0.13
Identities = 35/120 (29%), Positives = 40/120 (33%), Gaps = 14/120 (11%)
Frame = +1
Query: 358 GGSAPGWPGHHRLLPVPAA----GPAGQADGHLSELAAGEPADEASQALQAFEQDAGFRP 525
GG PG PG P GPAGQ G + G P L + D G P
Sbjct: 1153 GGGHPGQPGPPGEKGKPGQDGIPGPAGQK-GEPGQPGFGNPGPPGLPGLSGQKGDGGL-P 1210
Query: 526 HADAGPA----------HGRPGAYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEPPR 675
P HG PG Q PGP +P P + P P +G P R
Sbjct: 1211 GIPGNPGLPGPKGEPGFHGFPGV--------QGPPGPPGSPGPALEGPKGNPGPQGPPGR 1262
>gi|14149827|ref|NP_115528.1| (NM_032152) PRAM-1 protein; PML-RARA
target gene encoding an Adaptor Molecule-1 [Homo sapiens]
Length = 718
Score = 34.3 bits (77), Expect = 0.17
Identities = 34/128 (26%), Positives = 43/128 (33%)
Frame = +1
Query: 649 PEAEGEPPRKPEAPQEHHGRCXXXXXXXXXXSVALV*NEQELAGGDTL*GSAKRPTGDGG 828
PE G+ PRKP P +VA + L+ G G+A P G
Sbjct: 420 PEFFGDLPRKPPLPSS-------ASESSLPAAVAGFSSRHPLSPGF---GAAGTPRWRSG 469
Query: 829 PVVRAGRDQAGSRPSHPVRAADASPQPCVXXXXXXXXXXXXXXXXSSHGPLAPGSPSSLD 1008
+V +G + G RPSHP R P H P P P
Sbjct: 470 GLVHSGGARPGLRPSHPPRRRPLPP-----------------ASSLGHPPAKPPLPPGPV 512
Query: 1009 TSRLFRRP 1032
+ FRRP
Sbjct: 513 DMQSFRRP 520
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 10,046,356
Number of sequences in database: 19,244
Lambda K H
0.317 0.137 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26928069
Number of Sequences: 19244
Number of extensions: 755109
Number of successful extensions: 5214
Number of sequences better than 10.0: 139
Number of HSP's better than 10.0 without gapping: 2687
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 4670
length of query: 385
length of database: 10,046,356
effective HSP length: 41
effective length of query: 344
effective length of database: 9,257,352
effective search space: 3184529088
effective search space used: 3184529088
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search to RefSeq (Mouse) database
Query= 20030531C-000079 (20030531C-000079) 20030531C-000079
(1157 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
15,330 sequences; 7,155,815 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|29789020|ref|NP_034675.1| (NM_010545) Ia-associated invarian... 296 1e-80
Alignment gi|31541852|ref|NP_077211.3| (NM_024249) RIKEN cDNA 1810073N04 ... 38 0.008
Alignment gi|6680978|ref|NP_031767.1| (NM_007741) procollagen, type IX, a... 36 0.032
Alignment gi|6754572|ref|NP_034861.1| (NM_010731) leukemia/lymphoma relat... 35 0.092
Alignment gi|6680397|ref|NP_032378.1| (NM_008352) interleukin 12b; IL-12 ... 35 0.092
Alignment gi|7305533|ref|NP_038708.1| (NM_013680) synapsin I [Mus musculus] 34 0.12
Alignment gi|10800150|ref|NP_038679.2| (NM_013651) splicing factor 3a, su... 34 0.12
Alignment gi|15808996|ref|NP_291044.1| (NM_033566) SWI/SNF related, matri... 34 0.16
Alignment gi|13928676|ref|NP_113687.1| (NM_031499) proline rich protein 2... 33 0.27
Alignment gi|7305243|ref|NP_038617.1| (NM_013589) latent transforming gro... 33 0.27
>gi|29789020|ref|NP_034675.1| (NM_010545) Ia-associated invariant
chain; dinucleotide microsatellite; MHC class
II-associated invariant chain; class II-associated
invariant chain peptide; HLA-DR-GAMMA;
histocompatibility: class II antigens, gamma chain of;
invariant polypeptide of major histocompatibility
complex, class II antigen-associated [Mus musculus]
Length = 215
Score = 296 bits (759), Expect = 1e-80
Identities = 151/217 (69%), Positives = 175/217 (80%), Gaps = 3/217 (1%)
Frame = +2
Query: 239 MEDQRDLISNHEQLPMLGQRPGAPESKCSRGALYTGFSVLVALLLAGQATTAYFLYQQQG 418
M+DQRDLISNHEQLP+LG RP PE +CSRGALYTG SVLVALLLAGQATTAYFLYQQQG
Sbjct: 1 MDDQRDLISNHEQLPILGNRPREPE-RCSRGALYTGVSVLVALLLAGQATTAYFLYQQQG 59
Query: 419 RLDKLTVTSQNLQLEXXXXXXXXXXXXXXXXXVSAPMLMQALPMEGP--EPMRNATKYGN 592
RLDKLT+TSQNLQLE ++ P+LM+ + M+ P++N TKYGN
Sbjct: 60 RLDKLTITSQNLQLESLRMKLPKSAKPVSQMRMATPLLMRPMSMDNMLLGPVKNVTKYGN 119
Query: 593 MTQDHVMHLLLKSDPLGVYPKLKGSLPENLKHLKNTMDGVNWKLFENWLRQWLLFEMSKN 772
MTQDHVMHLL +S PL YP+LKG+ PENLKHLKN+MDGVNWK+FE+W++QWLLFEMSKN
Sbjct: 120 MTQDHVMHLLTRSGPL-EYPQLKGTFPENLKHLKNSMDGVNWKIFESWMKQWLLFEMSKN 178
Query: 773 SLEE-TPFEVPPKDPLETEDLSSGLGVTKQDLGQVIL 880
SLEE P E PPK+PL+ EDLSSGLGVT+Q+LGQV L
Sbjct: 179 SLEEKKPTEAPPKEPLDMEDLSSGLGVTRQELGQVTL 215
>gi|31541852|ref|NP_077211.3| (NM_024249) RIKEN cDNA 1810073N04 [Mus
musculus]
Length = 1090
Score = 38.1 bits (87), Expect = 0.008
Identities = 48/197 (24%), Positives = 67/197 (33%), Gaps = 13/197 (6%)
Frame = +1
Query: 355 PGGSAPGWPGHHRLLPVPAAG---PAGQADGHLSELAAGEPADEASQALQAFEQDAGFRP 525
PGG AP L P G P G+A H + + + Q + E+
Sbjct: 466 PGGEAPKEKQEAAQLDRPGQGIAVPMGEAHRHEPPIPHDKVVVDEGQDQEGPEEKKPPPR 525
Query: 526 HADAGPAHGR-------PGAYAQRHQVRQHDPGPRDAPA---PEV*PPGSVPEAEGEPPR 675
D G GR P + ++ + + G R E P VPEA G+PP
Sbjct: 526 LPDEGDPAGRGQGAPPLPESEKEKQEPERGGEGKRPGQVLAVGETEHPQKVPEANGQPPV 585
Query: 676 KPEAPQEHHGRCXXXXXXXXXXSVALV*NEQELAGGDTL*GSAKRPTGDGGPVVRAGRDQ 855
+P G SV L + LA D + K PV A
Sbjct: 586 QPRKEDSRPGNRDPQPAAQARDSVEL----KALAADDGREPAQKAGGALWKPVESAAESD 641
Query: 856 AGSRPSHPVRAADASPQ 906
AG + PV+ +A+ Q
Sbjct: 642 AGGKAGLPVQRPEAAEQ 658
>gi|6680978|ref|NP_031767.1| (NM_007741) procollagen, type IX, alpha
2 [Mus musculus]
Length = 688
Score = 36.2 bits (82), Expect = 0.032
Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 6/106 (5%)
Frame = +1
Query: 370 PGWPGHHRLLPVPAAGPAGQADGHLSELAAGEPADEASQALQAFEQDAGFR----PHADA 537
PG PGH L VP G G G G+ + Q L G P +
Sbjct: 326 PGSPGHQGLAGVP--GQPGTKGG------PGDKGEPGQQGLPGVSGPPGKEGEPGPRGEI 377
Query: 538 GP--AHGRPGAYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEP 669
GP G+ G +R V Q P R P E PPG +P +G P
Sbjct: 378 GPQGIMGQKGDQGERGPVGQPGPQGRQGPKGEQGPPG-IPGPQGLP 422
>gi|6754572|ref|NP_034861.1| (NM_010731) leukemia/lymphoma related
factor [Mus musculus]
Length = 565
Score = 34.7 bits (78), Expect = 0.092
Identities = 26/75 (34%), Positives = 31/75 (40%), Gaps = 7/75 (9%)
Frame = +1
Query: 358 GGSAPG-WPGHHR------LLPVPAAGPAGQADGHLSELAAGEPADEASQALQAFEQDAG 516
G S PG WP L P P A PA +GH AG +EA+ AL + G
Sbjct: 231 GDSTPGLWPERDEDAPPGGLFPPPTAPPATTQNGHYGRAGAGTGEEEAA-ALSEAAPEPG 289
Query: 517 FRPHADAGPAHGRPG 561
P +G A G G
Sbjct: 290 DSPGFLSGAAEGEDG 304
>gi|6680397|ref|NP_032378.1| (NM_008352) interleukin 12b; IL-12 p40
[Mus musculus]
Length = 335
Score = 34.7 bits (78), Expect = 0.092
Identities = 26/101 (25%), Positives = 45/101 (43%), Gaps = 10/101 (9%)
Frame = +2
Query: 515 VSAPMLMQALPMEGPEPMRNATKYGNMTQDHVMHLLLKSDPLGVYPKLKGSLPENL--KH 688
V+ P + LP+E R KY N + + ++K DP P+NL K
Sbjct: 195 VTCPTAEETLPIELALEARQQNKYENYSTSFFIRDIIKPDP-----------PKNLQMKP 243
Query: 689 LKNTMDGVNWKLFENW--------LRQWLLFEMSKNSLEET 787
LKN+ V+W+ ++W L+ ++ + K ++ET
Sbjct: 244 LKNSQVEVSWEYPDSWSTPHSYFSLKFFVRIQRKKEKMKET 284
>gi|7305533|ref|NP_038708.1| (NM_013680) synapsin I [Mus musculus]
Length = 670
Score = 34.3 bits (77), Expect = 0.12
Identities = 43/176 (24%), Positives = 53/176 (29%), Gaps = 2/176 (1%)
Frame = +1
Query: 358 GGSAPGWPGHHRLLPVPAAGPAGQADGHLSELA--AGEPADEASQALQAFEQDAGFRPHA 531
GG PG R P P Q HLS L AG P + + A Q +
Sbjct: 465 GGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTAAPQQSA----- 519
Query: 532 DAGPAHGRPGAYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEPPRKPEAPQEHHGRC 711
+ P Q Q R GP PP + P A P R+ APQ
Sbjct: 520 ----SQATPVTQGQGRQSRPVAGGPGA-------PPAARPPASPSPQRQAGAPQATRQAS 568
Query: 712 XXXXXXXXXXSVALV*NEQELAGGDTL*GSAKRPTGDGGPVVRAGRDQAGSRPSHP 879
GG G ++P G GP +A + G R P
Sbjct: 569 ISGPAPTKASGAP--------PGGQQRQGPPQKPPGPAGPTRQASQAGPGPRTGPP 616
Score = 33.5 bits (75), Expect = 0.21
Identities = 34/116 (29%), Positives = 43/116 (36%), Gaps = 2/116 (1%)
Frame = +1
Query: 355 PGGSAPGWPGHHRLLPVPAAGPAGQADGHLSELAAGEPADEASQALQAFEQDAGFRPHAD 534
P PG P R P A P+ Q + A + +AS + A + +G P
Sbjct: 535 PVAGGPGAPPAAR----PPASPSPQR-----QAGAPQATRQASISGPAPTKASGAPPGGQ 585
Query: 535 A--GPAHGRPGAYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEPPRKPEAPQE 696
GP PG Q Q PGPR P P S P G P KP+ Q+
Sbjct: 586 QRQGPPQKPPGPAGPTRQASQAGPGPRTGPPTTQQPRPSGPGPAGR-PAKPQLAQK 640
Score = 28.9 bits (63), Expect = 5.1
Identities = 45/184 (24%), Positives = 62/184 (33%), Gaps = 4/184 (2%)
Frame = +1
Query: 364 SAPGWPGHHRLLPVPAAGPAGQADGHLSELAAGEPADEASQALQAFEQDAGFRPHADAGP 543
++PG G H P A G+ S+ AG PA + RP GP
Sbjct: 426 ASPG-RGSHSQSSSPGALTLGR---QTSQQPAGPPAQQ--------------RPPPQGGP 467
Query: 544 AHGRPGAYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEPPRKPEAPQEHHGRCXXXX 723
PG Q ++Q P + PP P + P APQ+ +
Sbjct: 468 PQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQ-RLPSPTAAPQQSASQATPVT 526
Query: 724 XXXXXXSVALV*NEQELAGGDTL*GSAKRPTGDGGPVVRAGRDQAGSRPS----HPVRAA 891
S + +AGG A RP P +AG QA + S P +A+
Sbjct: 527 QGQGRQS-------RPVAGGPGA-PPAARPPASPSPQRQAGAPQATRQASISGPAPTKAS 578
Query: 892 DASP 903
A P
Sbjct: 579 GAPP 582
>gi|10800150|ref|NP_038679.2| (NM_013651) splicing factor 3a,
subunit 2; spliceosomal protein gene 62; splicing factor
3a, subunit 2, 66kD [Mus musculus]
Length = 475
Score = 34.3 bits (77), Expect = 0.12
Identities = 32/109 (29%), Positives = 37/109 (33%), Gaps = 2/109 (1%)
Frame = +1
Query: 361 GSAPGWPGHHRLLPVPAAGPAGQADGHLSELAAGEPADEASQ--ALQAFEQDAGFRPHAD 534
G P PG H P P+AG QA G A P A Q G P
Sbjct: 367 GVHPPAPGVH---PPPSAGVHPQAPGVHPPAPAVHPQAPGVHPPAPGIHPQAPGVHPQPP 423
Query: 535 AGPAHGRPGAYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEPPRKP 681
G PG + Q V +PG AP P + P + G P P
Sbjct: 424 PGVHPAAPGVHPQPPGVHPSNPGVHPAPMPPMLRPPLPSDGPGNMPPPP 472
>gi|15808996|ref|NP_291044.1| (NM_033566) SWI/SNF related, matrix
associated, actin dependent regulator of chromatin,
subfamily f, member 1 [Mus musculus]
Length = 1902
Score = 33.9 bits (76), Expect = 0.16
Identities = 27/102 (26%), Positives = 41/102 (39%), Gaps = 6/102 (5%)
Frame = +1
Query: 406 PAAGPAGQADGHLSELAAGEPADEASQALQAFEQDA-GFRPHADAGPAHGR--PGAYAQR 576
P +GP Q G+ + + +Q Q A G +A P +G+ P AY Q+
Sbjct: 24 PPSGPQ-QGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGSLSYAQQIPPYGQQGPSAYGQQ 82
Query: 577 HQV---RQHDPGPRDAPAPEV*PPGSVPEAEGEPPRKPEAPQ 693
Q Q P P+ P PP P A+ ++P+ Q
Sbjct: 83 GQTPYYNQQSPHPQQQPPYAQQPPSQTPHAQPSYQQQPQTQQ 124
>gi|13928676|ref|NP_113687.1| (NM_031499) proline rich protein 2
[Mus musculus]
Length = 317
Score = 33.1 bits (74), Expect = 0.27
Identities = 37/124 (29%), Positives = 41/124 (32%), Gaps = 12/124 (9%)
Frame = +1
Query: 355 PGGSAP----GWPGHHRLLPVPAAGPAGQADGHLSELAAGEPADEASQAL-QAFEQDAGF 519
PGG P G P P P GP A HL P Q Q+ G
Sbjct: 153 PGGPQPRPPQGPPPPAGPQPRPPQGPPPPAGPHLRPTQGPPPTGGPQQRYPQSPPPPGGP 212
Query: 520 RPHADAGPA-----HGRP--GAYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEPPRK 678
+P GP H RP G Q R GP P+ PP P G PR
Sbjct: 213 QPRPPQGPPPPGGPHPRPTQGPPPTGPQPRPTQ-GPPPTGGPQQRPPQGPPPPGGPQPRP 271
Query: 679 PEAP 690
P+ P
Sbjct: 272 PQGP 275
Score = 28.1 bits (61), Expect = 8.6
Identities = 31/112 (27%), Positives = 35/112 (30%)
Frame = +1
Query: 355 PGGSAPGWPGHHRLLPVPAAGPAGQADGHLSELAAGEPADEASQALQAFEQDAGFRPHAD 534
PGG P P P P GP + P + Q G +P
Sbjct: 83 PGGPQPRPPQG----PPPPGGPQPRPPQ-----GPPPPGGPQPRPPQGPPPPGGPQPRPP 133
Query: 535 AGPAHGRPGAYAQRHQVRQHDPGPRDAPAPEV*PPGSVPEAEGEPPRKPEAP 690
GP PG QR P P P P PP P G PR P+ P
Sbjct: 134 QGPPP--PGGPQQRPP---QGPPPPGGPQPR--PPQGPPPPAGPQPRPPQGP 178
>gi|7305243|ref|NP_038617.1| (NM_013589) latent transforming growth
factor beta binding protein 2 [Mus musculus]
Length = 1833
Score = 33.1 bits (74), Expect = 0.27
Identities = 35/138 (25%), Positives = 47/138 (33%), Gaps = 19/138 (13%)
Frame = +1
Query: 349 FCPGGSAPGWPGHHRLLPVPAAGPAGQADGHLSELAAGEPADEASQALQAFEQDAGFRPH 528
+CP S + H +P P PAG+ H + L P +++ L Q A P
Sbjct: 422 WCPANSTGKFC--HLPVPQPDREPAGRGSRHRTLLEG--PLKQSTFTLPLSNQLASVNPS 477
Query: 529 ADAGPAHGRPGAYAQRHQVRQ-------------------HDPGPRDAPAPEV*PPGSVP 651
H P A Q HQV + H P +P S+P
Sbjct: 478 LVKVQIHHPPEASVQIHQVARVRGELDPVLEDNSVETRASHRPHGNLGHSPWA--SNSIP 535
Query: 652 EAEGEPPRKPEAPQEHHG 705
GE PR P H+G
Sbjct: 536 ARAGEAPRPPPVLSRHYG 553
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 7,155,815
Number of sequences in database: 15,330
Lambda K H
0.317 0.137 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18640101
Number of Sequences: 15330
Number of extensions: 499334
Number of successful extensions: 3155
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 1699
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 2733
length of query: 385
length of database: 7,155,815
effective HSP length: 41
effective length of query: 344
effective length of database: 6,527,285
effective search space: 2245386040
effective search space used: 2245386040
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)