Search to RefSeq (Human) database
Query= 20030531C-000082 (20030531C-000082) 20030531C-000082
(1216 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,244 sequences; 10,046,356 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4507649|ref|NP_003280.1| (NM_003289) tropomyosin 2 (beta) [H... 310 1e-84
Alignment gi|27597085|ref|NP_000357.3| (NM_000366) tropomyosin 1 (alpha) ... 288 4e-78
Alignment gi|4507651|ref|NP_003281.1| (NM_003290) tropomyosin 4 [Homo sap... 249 2e-66
Alignment gi|22748619|ref|NP_689476.1| (NM_152263) tropomyosin 3 [Homo sa... 198 7e-51
Alignment gi|24119203|ref|NP_705935.1| (NM_153649) tropomyosin 3 [Homo sa... 180 2e-45
Alignment gi|24431997|ref|NP_078857.2| (NM_024581) chromosome 6 open read... 53 5e-07
Alignment gi|6005904|ref|NP_009045.1| (NM_007114) TATA element modulatory... 50 4e-06
Alignment gi|21735548|ref|NP_009117.2| (NM_007186) centrosomal protein 2;... 49 7e-06
Alignment gi|7669506|ref|NP_005954.2| (NM_005963) myosin, heavy polypepti... 45 1e-04
Alignment gi|4503469|ref|NP_003557.1| (NM_003566) early endosome antigen ... 45 1e-04
>gi|4507649|ref|NP_003280.1| (NM_003289) tropomyosin 2 (beta) [Homo
sapiens]
Length = 284
Score = 310 bits (795), Expect = 1e-84
Identities = 170/282 (60%), Positives = 193/282 (68%)
Frame = +3
Query: 72 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 251
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 252 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 431
SE++K+AQEKLE +EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 432 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 611
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 612 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 791
V+E + LEEEL+ + L +KLK
Sbjct: 181 ERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 792 XXXXXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNELN 917
KLEKTIDDLEE LA AKE+NV +HQTLDQTL ELN
Sbjct: 241 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 282
>gi|27597085|ref|NP_000357.3| (NM_000366) tropomyosin 1 (alpha)
[Homo sapiens]
Length = 284
Score = 288 bits (738), Expect = 4e-78
Identities = 161/281 (57%), Positives = 186/281 (65%)
Frame = +3
Query: 72 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 251
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 252 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 431
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 432 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 611
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 612 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 791
+SE + LEE+L+ + L SDKLK
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYEEEIKVLSDKLKEAETRAE 240
Query: 792 XXXXXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNEL 914
KLEK+IDDLE++L K K + + LD LN++
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281
>gi|4507651|ref|NP_003281.1| (NM_003290) tropomyosin 4 [Homo
sapiens]
Length = 248
Score = 249 bits (637), Expect = 2e-66
Identities = 138/242 (57%), Positives = 153/242 (63%)
Frame = +3
Query: 198 LTHLQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRA 377
L +++K++ + + D+ + + Q +L+ ++ AEGDVAALNRRIQLVEEELDRA
Sbjct: 7 LEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRA 66
Query: 378 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 557
QER RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 126
Query: 558 EEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXX 737
EEVARKLVI VSELKCGDLEEELKNVTNNL
Sbjct: 127 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 186
Query: 738 XXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNELN 917
SDKLK KLEKTIDDLEEKLAQAKE+NVGLHQTLDQTLNELN
Sbjct: 187 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 246
Query: 918 CI 923
CI
Sbjct: 247 CI 248
Score = 56.2 bits (134), Expect = 4e-08
Identities = 38/110 (34%), Positives = 61/110 (54%), Gaps = 7/110 (6%)
Frame = +3
Query: 75 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTE------- 233
E + +K+ +L+ + E A +RAE +E KC +EEEL ++ LK E
Sbjct: 127 EEVARKLVILEGELERAEERAE-------VSELKCGDLEEELKNVTNNLKSLEAASEKYS 179
Query: 234 DELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 383
++ DKY E +K +KL+ +E +A AE VA L + I +EE+L +A+E
Sbjct: 180 EKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 229
>gi|22748619|ref|NP_689476.1| (NM_152263) tropomyosin 3 [Homo
sapiens]
Length = 243
Score = 198 bits (503), Expect = 7e-51
Identities = 122/284 (42%), Positives = 149/284 (51%)
Frame = +3
Query: 72 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 251
MEAIKKKMQMLKLDKENA+DRAEQAE AE+K
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAE-----AEQK------------------------- 31
Query: 252 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 431
+E+++ E ++AA+ ++++ E+ELDRAQER
Sbjct: 32 ------------QAEERSKQLEDELAAMQKKLKGTEDELDRAQERLATALQKLEEAEKAA 79
Query: 432 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 611
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 80 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 139
Query: 612 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 791
++E KC +LEEELKNVTNNL +DKLK
Sbjct: 140 ERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAE 199
Query: 792 XXXXXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNELNCI 923
KLEKTIDDLE++L K K + + LD LN++ I
Sbjct: 200 FAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMTSI 243
>gi|24119203|ref|NP_705935.1| (NM_153649) tropomyosin 3 [Homo
sapiens]
Length = 248
Score = 180 bits (456), Expect = 2e-45
Identities = 101/237 (42%), Positives = 134/237 (55%)
Frame = +3
Query: 207 LQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQER 386
+++K++ + + D E + Q ++E + AE +VA+LNRRIQLVEEELDRAQER
Sbjct: 10 VKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQER 69
Query: 387 XXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEV 566
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEV
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEV 129
Query: 567 ARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXX 746
ARKLVI ++E +C +++E+++ + NL
Sbjct: 130 ARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEI 189
Query: 747 XXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNELN 917
+DKLK KLEKTIDDLE+KL KE+++ + LDQTL +LN
Sbjct: 190 KILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 246
Score = 52.0 bits (123), Expect = 8e-07
Identities = 31/103 (30%), Positives = 57/103 (55%)
Frame = +3
Query: 75 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 254
E + +K+ +++ D E +RAE AES + +E+ + +++ L L + + DKY
Sbjct: 127 EEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYE 186
Query: 255 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 383
E +K +KL+ +E +A AE VA L + I +E++L +E
Sbjct: 187 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKE 229
>gi|24431997|ref|NP_078857.2| (NM_024581) chromosome 6 open reading
frame 60 [Homo sapiens]
Length = 936
Score = 52.8 bits (125), Expect = 5e-07
Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 11/180 (6%)
Frame = +3
Query: 60 HCPAMEAI-------KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKK 218
H A+EA+ KKK+QM D EQ DK EE Q+++EL +L++
Sbjct: 370 HHMAIEAVHSNAIRDKKKLQM---------DLEEQHNKDKLNLEEDKNQLQQELENLKEV 420
Query: 219 LKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXX 398
L ED+L+ ++ + Q+ + SE+ AEG +A+L + ++ ELD ++
Sbjct: 421 L---EDKLNTANQEIGHLQDMVRKSEQGLGSAEGLIASLQDSQERLQNELDLTKD-SLKE 476
Query: 399 XXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEM----QLKEAKHIAEEADRKYEEV 566
R AMK+EEK+++ +M ++K +++ +E + EE+
Sbjct: 477 TKDALLNVEGELEQERQQHEETIAAMKEEEKLKVDKMAHDLEIKWTENLRQECSKLREEL 536
Score = 29.3 bits (64), Expect = 5.6
Identities = 24/108 (22%), Positives = 52/108 (47%), Gaps = 6/108 (5%)
Frame = +3
Query: 60 HCPAMEAIK----KKMQMLKLDKENAIDRAEQAESDKKAAEEKCK--QVEEELTHLQKKL 221
H A++ ++ +++ K++ E +ID S +++ E C+ ++EEL H + +
Sbjct: 709 HAAAIDLLRHNHHQELAAAKMELERSIDI-----SRRQSKEHICRITDLQEELRHREHHI 763
Query: 222 KGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEE 365
+ E+ EN+ ++LE K+ + N++I+L E E
Sbjct: 764 SELDKEVQHLHENISALTKELEFKGKEILRIRSE---SNQQIRLEEME 808
>gi|6005904|ref|NP_009045.1| (NM_007114) TATA element modulatory
factor 1 [Homo sapiens]
Length = 1093
Score = 49.7 bits (117), Expect = 4e-06
Identities = 44/178 (24%), Positives = 75/178 (41%), Gaps = 16/178 (8%)
Frame = +3
Query: 87 KKMQMLKLDKENAID--RAEQAESDKKAAE--EKCKQVEEELTHLQKKLKGTEDELDKYS 254
+K+ +L N I RA+ E++ A+ +K K++EEEL HL++ L G E+ ++
Sbjct: 563 EKLSKQQLHNSNIIKKLRAKDKENENMVAKLNKKVKELEEELQHLKQVLDGKEEVEKQHR 622
Query: 255 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXX--XXXXXXXXXXXX 428
EN+K +E EK + D+ L + + ++ LD A +
Sbjct: 623 ENIKKLNSMVERQEKDLGRLQVDMDELEEKNRSIQAALDSAYKELTDLHKANAAKDSEAQ 682
Query: 429 XXXXXRGMKVIE----------NRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVAR 572
R MK E A + +E + IQ L+ A E+A + E+ R
Sbjct: 683 EAALSREMKAKEELSAALEKAQEEARQQQETLAIQVGDLRLALQRTEQAAARKEDYLR 740
Score = 35.0 bits (79), Expect = 0.10
Identities = 58/322 (18%), Positives = 112/322 (34%), Gaps = 21/322 (6%)
Frame = +3
Query: 72 MEAIKKKMQMLKLDKENAIDRAEQAES-------DKKAAEEKCKQVEEELT--------- 203
M +K++ + K+ R +AE ++ AA+++ K ++EEL
Sbjct: 486 MFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEIKNIKEELATRLNSSETA 545
Query: 204 ----HLQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELD 371
++++G +E +K S+ ++ K + E VA LN++++ +EEEL
Sbjct: 546 DLLKEKDEQIRGLMEEGEKLSKQQLHNSNIIKKLRAKDKENENMVAKLNKKVKELEEELQ 605
Query: 372 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEA-D 548
++ + + + R KD ++++ +L+E + A D
Sbjct: 606 HLKQ----VLDGKEEVEKQHRENIKKLNSMVERQEKDLGRLQVDMDELEEKNRSIQAALD 661
Query: 549 RKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXX 728
Y+E+ E+K +EEL
Sbjct: 662 SAYKELTDLHKANAAKDSEAQEAALSREMKA---KEEL---------SAALEKAQEEARQ 709
Query: 729 XXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLN 908
D L I +L+++L +A+ +N L Q++ T
Sbjct: 710 QQETLAIQVGDLRLALQRTEQAAARKEDYLRHEIGELQQRLQEAENRNQELSQSVSSTTR 769
Query: 909 ELNCI*PKQKKSRSIKNSQATL 974
L R I+N QATL
Sbjct: 770 PL---------LRQIENLQATL 782
Score = 28.5 bits (62), Expect = 9.6
Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 10/163 (6%)
Frame = +3
Query: 84 KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSENL 263
K++ Q+L L KE A+ EE +++E+ ++++ D++++ +
Sbjct: 460 KREAQLLSLSKEKAL------------LEEAFDNLKDEMFRVKEESSSISSLKDEFTQRI 507
Query: 264 KDAQEKLELSEKKASDAEGDVAALNRRIQLVEEEL----------DRAQERXXXXXXXXX 413
+A EKK A + A + I+ ++EEL D +E+
Sbjct: 508 AEA-------EKKVQLACKERDAAKKEIKNIKEELATRLNSSETADLLKEKDEQIRGLME 560
Query: 414 XXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEE 542
+I+ KD+E + K+ K + EE
Sbjct: 561 EGEKLSKQQLHNSNIIKKLRAKDKENENMVAKLNKKVKELEEE 603
>gi|21735548|ref|NP_009117.2| (NM_007186) centrosomal protein 2;
centrosome associated protein; centrosomal
Nek2-associated protein 1 [Homo sapiens]
Length = 2442
Score = 48.9 bits (115), Expect = 7e-06
Identities = 38/168 (22%), Positives = 78/168 (45%), Gaps = 9/168 (5%)
Frame = +3
Query: 69 AMEAIKKKMQMLKLDKENA-----IDRAEQAES----DKKAAEEKCKQVEEELTHLQKKL 221
A++ + Q+L+L++EN ++ AEQA + D AE++ + + E+ THL+ +L
Sbjct: 609 ALDKVGLNQQLLQLEEENQSVCSRMEAAEQARNALQVDLAEAEKRREALWEKNTHLEAQL 668
Query: 222 KGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXX 401
+ E+ + +L+D QE+ E +KK S++ A +++ + +E R +E
Sbjct: 669 QKAEEAGAELQADLRDIQEEKEEIQKKLSESRHQQEAATTQLEQLHQEAKRQEEVLARAV 728
Query: 402 XXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEA 545
++ +E +D + + Q L AK + E +
Sbjct: 729 QEKEALVREKAALEVRLQAVE----RDRQDLAEQLQGLSSAKELLESS 772
Score = 31.2 bits (69), Expect = 1.5
Identities = 29/170 (17%), Positives = 72/170 (42%), Gaps = 1/170 (0%)
Frame = +3
Query: 72 MEAIKKKMQMLKLDKENAIDRAE-QAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDK 248
+E +++ M++ KL ++ + Q + ++ +E +Q ++L LQ+
Sbjct: 948 LERLRQDMKVQKLKEQETTGILQTQLQEAQRELKEAARQHRDDLAALQE----------- 996
Query: 249 YSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXX 428
E+ Q+K++L +K+ D + + A + +LVE+E+
Sbjct: 997 --ESSSLLQDKMDL-QKQVEDLKSQLVAQDDSQRLVEQEVQEKLRETQEYNRIQKELERE 1053
Query: 429 XXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKL 578
+ E R + +E I++ +L + +EA + +E++ ++
Sbjct: 1054 KASLTLSLMEKEQRLLVLQEADSIRQQELSALRQDMQEAQGEQKELSAQM 1103
>gi|7669506|ref|NP_005954.2| (NM_005963) myosin, heavy polypeptide 1,
skeletal muscle, adult; myosin heavy chain IIx/d [Homo
sapiens]
Length = 1939
Score = 45.1 bits (105), Expect = 1e-04
Identities = 29/110 (26%), Positives = 61/110 (55%), Gaps = 8/110 (7%)
Frame = +3
Query: 72 MEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKG------- 227
+E K+K++ LKL +E+A+D E+DK+ +EK K+ E E++ LQ K++
Sbjct: 1052 LERAKRKLEGDLKLAQESAMD----IENDKQQLDEKLKKKEFEMSGLQSKIEDEQALGMQ 1107
Query: 228 TEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRA 377
+ ++ + +++ +E++E + AE + L+R ++ + E L+ A
Sbjct: 1108 LQKKIKELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEA 1157
Score = 39.7 bits (91), Expect = 0.004
Identities = 31/159 (19%), Positives = 73/159 (45%), Gaps = 1/159 (0%)
Frame = +3
Query: 81 IKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSEN 260
I+ +M+ + + NA ++A++A +D E+ K+ ++ HL++ K E +
Sbjct: 1741 IQGEMEDIIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLE-------QT 1793
Query: 261 LKDAQEKLELSEKKA-SDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXX 437
+KD Q +L+ +E+ A + + L R++ +E E++ Q+R
Sbjct: 1794 VKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVESEQKRNVEAVKGLRKHERKVKE 1853
Query: 438 XXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRK 554
+ ++ ++ ++ + ++K K AEEA+ +
Sbjct: 1854 LTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAEEQ 1892
Score = 38.5 bits (88), Expect = 0.009
Identities = 34/169 (20%), Positives = 66/169 (38%)
Frame = +3
Query: 72 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 251
+E ++ + +++D E A + E D K A+E +E + L +KLK E E+
Sbjct: 1038 LEGSLEQEKKIRMDLERA---KRKLEGDLKLAQESAMDIENDKQQLDEKLKKKEFEMSGL 1094
Query: 252 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 431
++D Q +KK + L RI+ +EEE++ +
Sbjct: 1095 QSKIEDEQALGMQLQKK-------IKELQARIEELEEEIEAERASRAKAEKQRSDLSREL 1147
Query: 432 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKL 578
++ E + +E + ++ + EEA ++E A L
Sbjct: 1148 EEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEATAATL 1196
Score = 38.5 bits (88), Expect = 0.009
Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 1/150 (0%)
Frame = +3
Query: 81 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVEEELTHLQKKLKGTEDELDKYSE 257
+++KM L +K N + QAE+D A AEE+C Q+ + L+ K+K + + E
Sbjct: 877 LEEKMVTLMQEK-NDLQLQVQAEADSLADAEERCDQLIKTKIQLEAKIKEVTERAEDEEE 935
Query: 258 NLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXX 437
+ K E + S+ + D+ L + VE+E + +
Sbjct: 936 INAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDETIAK 995
Query: 438 XXRGMKVIENRAMKDEEKMEIQEMQLKEAK 527
+ E +A+++ + + ++Q +E K
Sbjct: 996 LTK-----EKKALQEAHQQTLDDLQAEEDK 1020
Score = 37.0 bits (84), Expect = 0.027
Identities = 37/162 (22%), Positives = 70/162 (42%)
Frame = +3
Query: 72 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 251
+E +K++ + L+ + + ++ + E+ KQVE+E + LQ L+ E L+
Sbjct: 1499 LETLKRENKNLQQEISDLTEQIAEGGKRIHELEKIKKQVEQEKSELQAALEEAEASLE-- 1556
Query: 252 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 431
E K + +LEL++ K+ ++R+I +EE+D+ +
Sbjct: 1557 HEEGKILRIQLELNQVKSE--------VDRKIAEKDEEIDQMKRNHIRIVESMQSTLDAE 1608
Query: 432 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 557
++ + D +MEI QL A +A EA R Y
Sbjct: 1609 IRSRNDAIRLKKKMEGDLNEMEI---QLNHANRMAAEALRNY 1647
Score = 33.5 bits (75), Expect = 0.30
Identities = 54/281 (19%), Positives = 106/281 (37%), Gaps = 2/281 (0%)
Frame = +3
Query: 138 EQAESDKKAA--EEKCKQVEEELTHLQKKLKGTEDELDKYSENLKDAQEKLELSEKKASD 311
+ AE++K+ A +E+ ++ +EEL + K K E+++ + D Q +++ +D
Sbjct: 845 KSAETEKEMANMKEEFEKTKEELAKTEAKRKELEEKMVTLMQEKNDLQLQVQAEADSLAD 904
Query: 312 AEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEK 491
AE R QL++ ++ + +K + RA +DEE+
Sbjct: 905 AE------ERCDQLIKTKIQLEAK----------------------IKEVTERA-EDEEE 935
Query: 492 MEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNV 671
+ E+ K+ K E ++ K + +L + E + E ++KN+
Sbjct: 936 IN-AELTAKKRKLEDECSELKKDIDDLELTLAKV------------EKEKHATENKVKNL 982
Query: 672 TNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKL 851
T + D L+ KLE+ +DDLE L
Sbjct: 983 TEEMAGLDETIAKLTKEKKALQEAHQQTLDDLQAEEDKVNTLTKAKIKLEQQVDDLEGSL 1042
Query: 852 AQAKEKNVGLHQTLDQTLNELNCI*PKQKKSRSIKNSQATL 974
Q K+ + L + + +L Q+ + I+N + L
Sbjct: 1043 EQEKKIRMDLERAKRKLEGDLKL---AQESAMDIENDKQQL 1080
>gi|4503469|ref|NP_003557.1| (NM_003566) early endosome antigen 1,
162kD; early endosome-associated protein [Homo sapiens]
Length = 1410
Score = 44.7 bits (104), Expect = 1e-04
Identities = 36/112 (32%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Frame = +3
Query: 63 CPAMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDEL 242
C A++ I+K+ + +KE ++++ AE + E KC+Q E+E+T L ++LK + E
Sbjct: 1102 CKALQDIQKEKSLK--EKELVNEKSKLAEIE----EIKCRQ-EKEITKLNEELKSHKLES 1154
Query: 243 DKYSENLKDA-----QEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 383
K NLKDA Q+KLEL + KA + V R Q++++++ + +E
Sbjct: 1155 IKEITNLKDAKQLLIQQKLEL-QGKADSLKAAVEQEKRNQQILKDQVKKEEE 1205
Score = 36.2 bits (82), Expect = 0.046
Identities = 39/201 (19%), Positives = 79/201 (38%), Gaps = 6/201 (2%)
Frame = +3
Query: 84 KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSENL 263
+KK Q+ L E I ++ E + K ++++LT ++L ++++ N
Sbjct: 970 QKKKQIEALQGELKIAVLQKTELENK--------LQQQLTQAAQELAAEKEKISVLQNNY 1021
Query: 264 KDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXX 443
+ +QE + + E ++ A + ++ VEE+L AQE
Sbjct: 1022 EKSQETFKQLQSDFYGRESELLATRQDLKSVEEKLSLAQEDLISNRNQIGNQNKLIQELK 1081
Query: 444 RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXX 623
+E + K E+++ + + K + I +E K +E+ +
Sbjct: 1082 TAKATLEQDSAKKEQQL---QERCKALQDIQKEKSLKEKELVNE----------KSKLAE 1128
Query: 624 VSELKCGD------LEEELKN 668
+ E+KC L EELK+
Sbjct: 1129 IEEIKCRQEKEITKLNEELKS 1149
Score = 32.7 bits (73), Expect = 0.51
Identities = 20/108 (18%), Positives = 53/108 (48%), Gaps = 3/108 (2%)
Frame = +3
Query: 72 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAA---EEKCKQVEEELTHLQKKLKGTEDEL 242
++ K+ + +L+ ++E+ + + E + +EK +++E+T L + +K +
Sbjct: 532 LQKSKENISLLEKEREDLYAKIQAGEGETAVLNQLQEKNHTLQDEVTQLTENVKNQSESH 591
Query: 243 DKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQER 386
+ ENL D ++ + + A D V +L + + +L+ ++E+
Sbjct: 592 KQAQENLHDQVQEQKAHLRAAQDR---VLSLETSVNELNSQLNESKEK 636
Score = 31.6 bits (70), Expect = 1.1
Identities = 19/100 (19%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Frame = +3
Query: 75 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEE----KCKQVEEELTHLQKKLKGTEDEL 242
E +K+K+ + ++ +D+ +Q +++A ++ K ++ + +L + +++ + ++
Sbjct: 467 EQLKEKVTN-STELQHQLDKTKQQHQEQQALQQSTTAKLREAQNDLEQVLRQIGEKDQKI 525
Query: 243 DKYSENLKDAQEKLELSEKKASD-------AEGDVAALNR 341
L+ ++E + L EK+ D EG+ A LN+
Sbjct: 526 QNLEALLQKSKENISLLEKEREDLYAKIQAGEGETAVLNQ 565
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 10,046,356
Number of sequences in database: 19,244
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14981440
Number of Sequences: 19244
Number of extensions: 293765
Number of successful extensions: 2720
Number of sequences better than 10.0: 312
Number of HSP's better than 10.0 without gapping: 1405
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 2266
length of query: 405
length of database: 10,046,356
effective HSP length: 47
effective length of query: 357
effective length of database: 9,141,888
effective search space: 3263654016
effective search space used: 3263654016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search to RefSeq (Mouse) database
Query= 20030531C-000082 (20030531C-000082) 20030531C-000082
(1216 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
15,330 sequences; 7,155,815 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|31560030|ref|NP_077745.2| (NM_024427) tropomyosin 1, alpha; ... 328 3e-90
Alignment gi|11875203|ref|NP_033442.2| (NM_009416) tropomyosin 2, beta [M... 308 4e-84
Alignment gi|13928666|ref|NP_071709.1| (NM_022314) tropomyosin 3, gamma; ... 305 2e-83
Alignment gi|6754784|ref|NP_034994.1| (NM_010864) myosin Va; flailer; dil... 46 3e-05
Alignment gi|6754774|ref|NP_034986.1| (NM_010856) myosin, heavy polypepti... 43 3e-04
Alignment gi|19745146|ref|NP_034211.1| (NM_010081) dystonin isoform e; bu... 43 3e-04
Alignment gi|23821025|ref|NP_062739.2| (NM_019765) restin; cytoplasmic li... 42 5e-04
Alignment gi|30794168|ref|NP_083191.1| (NM_028915) RIKEN cDNA 1200008A14 ... 41 0.001
Alignment gi|18859641|ref|NP_542766.1| (NM_080728) myosin, heavy polypept... 41 0.001
Alignment gi|16716511|ref|NP_444434.1| (NM_053204) Rab6-interacting prote... 41 0.001
>gi|31560030|ref|NP_077745.2| (NM_024427) tropomyosin 1, alpha;
alpha tropomyosin [Mus musculus]
Length = 284
Score = 328 bits (841), Expect = 3e-90
Identities = 179/282 (63%), Positives = 199/282 (70%)
Frame = +3
Query: 72 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 251
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 252 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 431
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 432 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 611
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 612 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 791
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 792 XXXXXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNELN 917
KLEK+IDDLEEK+A AKE+N+ +HQ LDQTL ELN
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>gi|11875203|ref|NP_033442.2| (NM_009416) tropomyosin 2, beta [Mus
musculus]
Length = 284
Score = 308 bits (788), Expect = 4e-84
Identities = 167/284 (58%), Positives = 192/284 (66%)
Frame = +3
Query: 72 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 251
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 252 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 431
SE++KDAQEKLE +EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 432 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 611
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 612 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 791
V+E KCGDLEEELK VTNNL +KLK
Sbjct: 181 ERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 792 XXXXXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNELNCI 923
KLEKTIDDLE+++ K K + + LD LN++ +
Sbjct: 241 FAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITSL 284
>gi|13928666|ref|NP_071709.1| (NM_022314) tropomyosin 3, gamma;
skalphaTM.2; tropomyosin 5 [Mus musculus]
Length = 284
Score = 305 bits (782), Expect = 2e-83
Identities = 167/284 (58%), Positives = 191/284 (66%)
Frame = +3
Query: 72 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 251
MEAIKKKMQMLKLDKEN +DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKY 60
Query: 252 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 431
SE LKDAQEKLEL+EKKA+DAE +VA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 432 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 611
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 180
Query: 612 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 791
++E KC +LEEELKNVTNNL +DKLK
Sbjct: 181 ERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAE 240
Query: 792 XXXXXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNELNCI 923
KLEKTIDDLE++L K K + LD LN++ I
Sbjct: 241 FAERSVAKLEKTIDDLEDELYAQKLKYKAISDELDHALNDMTSI 284
>gi|6754784|ref|NP_034994.1| (NM_010864) myosin Va; flailer; dilute
lethal-20J protein [Mus musculus]
Length = 1853
Score = 46.2 bits (108), Expect = 3e-05
Identities = 37/164 (22%), Positives = 73/164 (43%)
Frame = +3
Query: 87 KKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSENLK 266
++ + L + EN I + Q + D++ + KC L +KL E + +E L+
Sbjct: 916 ERYKKLHIGMENKIMQL-QRKVDEQNKDYKC---------LMEKLTNLEGVYNSETEKLR 965
Query: 267 DAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXR 446
+ E+L+LSE++A A G V +L I + ++L++ +
Sbjct: 966 NDVERLQLSEEEAKVATGRVLSLQEEIAKLRKDLEQTRSEKKSIEERADKYKQETDQLVS 1025
Query: 447 GMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKL 578
+K E + +EK + +++AK + E +RK E ++L
Sbjct: 1026 NLK--EENTLLKQEKETLNHRIVEQAKEMTETMERKLVEETKQL 1067
Score = 33.5 bits (75), Expect = 0.21
Identities = 32/108 (29%), Positives = 48/108 (43%), Gaps = 11/108 (10%)
Frame = +3
Query: 96 QMLKLDKENAIDRA--EQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSENL-- 263
++L L +E A R EQ S+KK+ EE+ + ++E L LK L + E L
Sbjct: 984 RVLSLQEEIAKLRKDLEQTRSEKKSIEERADKYKQETDQLVSNLKEENTLLKQEKETLNH 1043
Query: 264 ---KDAQEKLELSEKK----ASDAEGDVAALNRRIQLVEEELDRAQER 386
+ A+E E E+K E D+ R Q + E R +ER
Sbjct: 1044 RIVEQAKEMTETMERKLVEETKQLELDLNDERLRYQNLLNEFSRLEER 1091
>gi|6754774|ref|NP_034986.1| (NM_010856) myosin, heavy polypeptide 6,
cardiac muscle, alpha; myosin heavy chain, cardiac
muscle, adult; alpha myosin; alpha cardiac MHC;
cardiomyopathy, hypertrophic 1 [Mus musculus]
Length = 1938
Score = 43.1 bits (100), Expect = 3e-04
Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 9/166 (5%)
Frame = +3
Query: 84 KKKMQ----MLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 251
KKKM+ L+ + E A+ AE K A + EEL KK + T L++
Sbjct: 1729 KKKMESDLTQLQTEVEEAVQECRNAEEKAKKAITDAAMMAEEL----KKEQDTSAHLERM 1784
Query: 252 SENL----KDAQEKLELSEKKA-SDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXX 416
+N+ KD Q +L+ +E+ A + + L R++ +E EL+ Q+R
Sbjct: 1785 KKNMEQTIKDLQHRLDEAEQIALKGGKKQLQKLEARVRELENELEAEQKRNAESVKGMRK 1844
Query: 417 XXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRK 554
+ + M+ ++ ++ ++++K K AEEA+ +
Sbjct: 1845 SERRIKELTYQTEEDKKNLMRLQDLVDKLQLKVKAYKRQAEEAEEQ 1890
Score = 38.9 bits (89), Expect = 0.005
Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 1/150 (0%)
Frame = +3
Query: 81 IKKKMQMLKLDKENAIDRAEQAESDK-KAAEEKCKQVEEELTHLQKKLKGTEDELDKYSE 257
+++KM L L ++N + QAE D AEE+C Q+ + L+ K+K + L+ E
Sbjct: 875 LEEKMVSL-LQEKNDLQLQVQAEQDNLNDAEERCDQLIKNKIQLEAKVKEMTERLEDEEE 933
Query: 258 NLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXX 437
+ K E + S+ + D+ L + VE+E + +
Sbjct: 934 MNAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEIIAK 993
Query: 438 XXRGMKVIENRAMKDEEKMEIQEMQLKEAK 527
+ E +A+++ + + ++Q +E K
Sbjct: 994 LTK-----EKKALQEAHQQALDDLQAEEDK 1018
Score = 38.1 bits (87), Expect = 0.009
Identities = 35/131 (26%), Positives = 59/131 (44%), Gaps = 26/131 (19%)
Frame = +3
Query: 72 MEAIKKKMQMLKLDKENAIDRAEQ-----AESDKKAAEEKCKQVEEELTHLQKK----LK 224
+E +KK M+ D ++ +D AEQ + + E + +++E EL QK+ +K
Sbjct: 1781 LERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQKLEARVRELENELEAEQKRNAESVK 1840
Query: 225 GTE-------------DELDKYSENLKDAQEKLELSEK----KASDAEGDVAALNRRIQL 353
G +E K L+D +KL+L K +A +AE + +
Sbjct: 1841 GMRKSERRIKELTYQTEEDKKNLMRLQDLVDKLQLKVKAYKRQAEEAEEQANTNLSKFRK 1900
Query: 354 VEEELDRAQER 386
V+ ELD A+ER
Sbjct: 1901 VQHELDEAEER 1911
Score = 37.4 bits (85), Expect = 0.015
Identities = 25/93 (26%), Positives = 45/93 (47%)
Frame = +3
Query: 84 KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSENL 263
+K+M +K + D E++E+ +K EEK + +E LQ +++ +D NL
Sbjct: 848 EKEMANMKEEFGRVKDALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQD-------NL 900
Query: 264 KDAQEKLELSEKKASDAEGDVAALNRRIQLVEE 362
DA+E+ + K E V + R++ EE
Sbjct: 901 NDAEERCDQLIKNKIQLEAKVKEMTERLEDEEE 933
Score = 37.4 bits (85), Expect = 0.015
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Frame = +3
Query: 72 MEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVEEELT--------------H 206
+E K+K++ LKL +E+ +D E+DK EEK K+ E +++
Sbjct: 1050 LERAKRKLEGDLKLTQESIMD----LENDKLQLEEKLKKKEFDISQQNSKIEDEQALALQ 1105
Query: 207 LQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRA 377
LQKKLK + +++ E L+ + EK SD L+R ++ + E L+ A
Sbjct: 1106 LQKKLKENQARIEELEEELEAERTARAKVEKLRSD-------LSRELEEISERLEEA 1155
Score = 31.2 bits (69), Expect = 1.0
Identities = 35/167 (20%), Positives = 61/167 (35%)
Frame = +3
Query: 81 IKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSEN 260
+KKKM+ + E + +A + S+ A++ K + L Q +L D EN
Sbjct: 1616 VKKKMEGDLNEMEIQLSQANRIASE---AQKHLKNSQAHLKDTQLQLDDAVHANDDLKEN 1672
Query: 261 LKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXX 440
+ + + L + + + V R +L E+EL ER
Sbjct: 1673 IAIVERRNNLLQAELEELRAVVEQTERSRKLAEQELIETSERVQLLHSQ----------- 1721
Query: 441 XRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLV 581
+ ++KME QL+ A + R EE A+K +
Sbjct: 1722 -------NTSLINQKKKMESDLTQLQTEVEEAVQECRNAEEKAKKAI 1761
>gi|19745146|ref|NP_034211.1| (NM_010081) dystonin isoform e; bullous
pemphigoid antigen 1; dystonia musculorum [Mus musculus]
Length = 2611
Score = 42.7 bits (99), Expect = 3e-04
Identities = 32/171 (18%), Positives = 79/171 (45%), Gaps = 6/171 (3%)
Frame = +3
Query: 84 KKKMQMLKLDKENAIDRAEQAESDKKAA--EEKCKQVEEELTHLQKKLKGTEDELDKYSE 257
K + +M +L E + + E+A S++KA ++K + L L++ L+ + ++YS+
Sbjct: 1337 KAEKEMRELKYELSAVQLEKASSEEKARLLKDKLDETNNTLKCLKEDLERKDQAQERYSQ 1396
Query: 258 NLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXX 437
L+D +L + KA + + L + + EL+ +
Sbjct: 1397 QLRDLGGQLNQTTDKAEEVRQEANDLKKIKHTYQLELESLHQEKGKLQREVDRVTRAHAL 1456
Query: 438 XXRGMKVIENR--AMKDEEKMEIQEMQL--KEAKHIAEEADRKYEEVARKL 578
R ++ + ++ A +DE+ + + +L +++ H+ EE +R + ++ + +
Sbjct: 1457 AERNIQCLNSQVHASRDEKDLSEERRRLCQRKSDHLKEEFERSHAQLLQNI 1507
Score = 35.0 bits (79), Expect = 0.072
Identities = 23/100 (23%), Positives = 50/100 (50%)
Frame = +3
Query: 84 KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSENL 263
++K Q+ + + DR ++ + E K +EE++TH +K+ ++E DK+ +
Sbjct: 1661 EQKAQLQRAQVQELNDRLKRVQD-----ELHLKTIEEQMTH--RKMILLQEESDKFKRSA 1713
Query: 264 KDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 383
+ ++K+E + E D++ + ++ E RAQE
Sbjct: 1714 DEFRKKMEKLMESKVVTETDLSGIKHDFVSLQRENFRAQE 1753
Score = 30.8 bits (68), Expect = 1.4
Identities = 41/188 (21%), Positives = 77/188 (40%), Gaps = 23/188 (12%)
Frame = +3
Query: 84 KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGT-------EDEL 242
+++++ + +KE A E+ AE + VEE L + + +L+ ED L
Sbjct: 1168 RRELETIVREKEAAERELERVRQLTAEAEARRAAVEENLRNFRSQLQENTFTRQTLEDHL 1227
Query: 243 DKYSENLKD-AQEKLELSE--KKASDAEGDVAALNRRI--------QLVEEELDRAQE-- 383
+ +L D Q+K L E ++ D E ++ L +++ Q+ E++L Q+
Sbjct: 1228 RRKDSSLSDLEQQKRALVEELQRKRDHEEELLRLVKQMERDLAFQKQVAEKQLKEKQKVE 1287
Query: 384 ---RXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRK 554
R R + + R ++E K ++ E+ L K E + K
Sbjct: 1288 LEARRKITEIQFSCRESAAVAQARPQRE-QGRQKEEELKQQVDELTLANRKAEKEMRELK 1346
Query: 555 YEEVARKL 578
YE A +L
Sbjct: 1347 YELSAVQL 1354
Score = 30.8 bits (68), Expect = 1.4
Identities = 28/170 (16%), Positives = 67/170 (38%)
Frame = +3
Query: 75 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 254
+AI+++ ++L++ + D+ E KQ + E +K+K ED+L +
Sbjct: 1567 QAIQQRCEVLRIQADGFKDQLRNTN------EHLHKQTKTE-QDFHRKIKSLEDDLAQSQ 1619
Query: 255 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXX 434
+ + ++K + E +V +L+ + +EE R +++
Sbjct: 1620 NLVSEFKQKCDQQSMIIQKTEKEVRSLSAELSASKEEKRREEQKAQLQRAQVQELNDRLK 1679
Query: 435 XXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI 584
+ + KM + + + + K A+E +K E++ V+
Sbjct: 1680 RVQDELHLKTIEEQMTHRKMILLQEESDKFKRSADEFRKKMEKLMESKVV 1729
Score = 28.5 bits (62), Expect = 6.8
Identities = 31/171 (18%), Positives = 70/171 (40%), Gaps = 2/171 (1%)
Frame = +3
Query: 69 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDK 248
A E ++++ L D+AE +V +E L+K + EL+
Sbjct: 1390 AQERYSQQLRDLGGQLNQTTDKAE--------------EVRQEANDLKKIKHTYQLELES 1435
Query: 249 YSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXX 428
+ Q +++ + + AE ++ LN ++ +E D ++ER
Sbjct: 1436 LHQEKGKLQREVDRVTRAHALAERNIQCLNSQVHASRDEKDLSEERRRLCQRKSDHLKEE 1495
Query: 429 XXXXXRGMKVIENRAMKDEEKMEIQEM--QLKEAKHIAEEADRKYEEVARK 575
++++N + E +IQ++ +L+++ AE +K +E+ R+
Sbjct: 1496 FERSH--AQLLQNIQAEKENNDKIQKLNKELEKSNECAETLKQKVDELTRQ 1544
>gi|23821025|ref|NP_062739.2| (NM_019765) restin; cytoplasmic linker
protein 50; Reed-Steinberg cell-espressed intermediate
filament-associated protein; 4631429H07Rik [Mus musculus]
Length = 1391
Score = 42.4 bits (98), Expect = 5e-04
Identities = 37/165 (22%), Positives = 79/165 (47%), Gaps = 13/165 (7%)
Frame = +3
Query: 72 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQV---EEELTHLQKKLKGTEDEL 242
+E + K ++L ++ + + ++ E+ K+AA +K +Q+ +EE L ++L T DE+
Sbjct: 1087 VEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEV 1146
Query: 243 DKYSENLKDAQ----EKLELSEKKAS---DAEGDVAALNRRIQLVEE---ELDRAQERXX 392
+ + ++ + LE+ ++++ DA+ + A+L + I L E D E+
Sbjct: 1147 TSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLR 1206
Query: 393 XXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAK 527
++ +E+ +K E K++ E+QLKE K
Sbjct: 1207 NEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENK 1251
Score = 39.3 bits (90), Expect = 0.004
Identities = 38/178 (21%), Positives = 78/178 (43%), Gaps = 5/178 (2%)
Frame = +3
Query: 60 HCPAMEAIKKKMQMLKLDKENAIDRAE--QAESDKKAAEEKCKQVEEELTHLQKKLKGTE 233
H + +++K+ L+ E + ++ + +A+ +K ++E K K EE L +LQK L TE
Sbjct: 950 HEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKH-EEILQNLQKMLADTE 1008
Query: 234 DELDKYSE---NLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXX 404
D+L E +L E+L+ KA A+ A+ Q+ +E+ +
Sbjct: 1009 DKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQT 1068
Query: 405 XXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKL 578
+K +E K +E + ++ +++E K E + + +++L
Sbjct: 1069 NARLQNELDTLKENNLKTVE-ELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQL 1125
Score = 31.2 bits (69), Expect = 1.0
Identities = 47/220 (21%), Positives = 85/220 (38%), Gaps = 23/220 (10%)
Frame = +3
Query: 75 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQ----VEEELTHLQKKLKGTEDEL 242
+A K K D +++ + +++ A+ E KQ ++ EL L++ T +EL
Sbjct: 1031 QADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEEL 1090
Query: 243 DKYSENLKDAQEKLELSEKK-------ASDAEGDVAALNRRIQLVEEELDRAQERXXXXX 401
+K E L +K+E +K+ A+ ++AL + EEL R ++
Sbjct: 1091 NKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQ 1150
Query: 402 XXXXXXXXXXXXXXRGMKVIENRAMK--DEEKMEIQEMQLKEAKHIAEEADRKYEEVARK 575
MK E+ K DEEK +Q+ + + E D + E++ +
Sbjct: 1151 KLEEERSVLNNQLLE-MKKRESEFRKDADEEKASLQK-SISLTSALLTEKDAELEKLRNE 1208
Query: 576 LVIXXXXXXXXXXXXXV----------SELKCGDLEEELK 665
+ + V ELK +LE +LK
Sbjct: 1209 VTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLK 1248
>gi|30794168|ref|NP_083191.1| (NM_028915) RIKEN cDNA 1200008A14 [Mus
musculus]
Length = 993
Score = 41.2 bits (95), Expect = 0.001
Identities = 38/157 (24%), Positives = 67/157 (42%)
Frame = +3
Query: 84 KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSENL 263
K + Q+ L +EN R ESD A KCK +E++ ++K +D L + +
Sbjct: 780 KLEAQIESLCRENESLRKSH-ESDCDALRIKCKIIEDQNETIRK----LKDSLQEKDGQI 834
Query: 264 KDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXX 443
K QE++ L EK + + + + ++ + E+L+R ER
Sbjct: 835 KLLQEQIALIEKCSQEQLNEKSP---QLDSIVEKLERHNERKEKLKQQLKAKELELEEIR 891
Query: 444 RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRK 554
+ + + E + EMQ+KE K E+ +RK
Sbjct: 892 KAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERK 928
Score = 29.3 bits (64), Expect = 4.0
Identities = 34/162 (20%), Positives = 70/162 (42%), Gaps = 5/162 (3%)
Frame = +3
Query: 84 KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSENL 263
++K ++K+DK N D + ++ +E+ + + E T +KKL DEL K ++
Sbjct: 399 EQKTGVIKVDK-NFSDNSTYRSLVEQLDQEREMRWKAEQT--EKKLMDYIDELHKQADEK 455
Query: 264 KDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXX 443
KD + ++ + DA +++++ + R Q
Sbjct: 456 KDVHSQALITTDRLKDAIFKERHCKAQLEII---VHRLQNEVKKLTIELMKARDQQEDHI 512
Query: 444 RGMKVIENRAMKDEEKMEIQEMQ-----LKEAKHIAEEADRK 554
R ++ +E RA++ EK + Q+ ++E + A ADR+
Sbjct: 513 RHLRTLE-RALEKMEKQKAQQQAAQIRLIQEVELKASAADRE 553
Score = 28.9 bits (63), Expect = 5.2
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Frame = +3
Query: 60 HCPAMEAIKKKMQMLKLDKEN---AIDRAEQAESDK----KAAEEKCKQVEEELTHLQKK 218
H E +K++++ +L+ E A + DK E + K+V+E+ ++K
Sbjct: 869 HNERKEKLKQQLKAKELELEEIRKAYSTLNKKWHDKGELLSHLEMQVKEVKEKFEDKERK 928
Query: 219 LKGTEDELDKYSENLKDAQEKLE 287
LK E DK E KDA EKL+
Sbjct: 929 LKA---ERDKSLELQKDAMEKLQ 948
>gi|18859641|ref|NP_542766.1| (NM_080728) myosin, heavy polypeptide 7,
cardiac muscle, beta; myosin heavy chain, cardiac muscle,
fetal [Mus musculus]
Length = 1935
Score = 40.8 bits (94), Expect = 0.001
Identities = 38/166 (22%), Positives = 71/166 (41%), Gaps = 9/166 (5%)
Frame = +3
Query: 84 KKKMQ----MLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 251
KKKM L+ + E A+ AE K A + EEL KK + T L++
Sbjct: 1727 KKKMDADLSQLQTEVEEAVQECRNAEEKAKKAITDAAMMAEEL----KKEQDTSAHLERM 1782
Query: 252 SENL----KDAQEKLELSEKKA-SDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXX 416
+N+ KD Q +L+ +E+ A + + L R++ +E EL+ Q+R
Sbjct: 1783 KKNMEQTIKDLQHRLDEAEQIALKGGKKQLQKLEARVRELENELEAEQKRNAESVKGMRK 1842
Query: 417 XXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRK 554
+ ++ ++ ++ ++++K K AEEA+ +
Sbjct: 1843 SERRIKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQAEEAEEQ 1888
Score = 40.0 bits (92), Expect = 0.002
Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 1/150 (0%)
Frame = +3
Query: 81 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVEEELTHLQKKLKGTEDELDKYSE 257
+++KM L L ++N + QAE D A AEE+C Q+ + L+ K+K + L+ E
Sbjct: 873 LEEKMVSL-LQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMTERLEDEEE 931
Query: 258 NLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXX 437
+ K E + S+ + D+ L + VE+E + +
Sbjct: 932 MNAELTAKKRKLEDECSELKRDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEIIVK 991
Query: 438 XXRGMKVIENRAMKDEEKMEIQEMQLKEAK 527
+ E +A+++ + + ++Q +E K
Sbjct: 992 LTK-----EKKALQEAHQQALDDLQAEEDK 1016
Score = 38.9 bits (89), Expect = 0.005
Identities = 32/177 (18%), Positives = 75/177 (42%), Gaps = 7/177 (3%)
Frame = +3
Query: 72 MEAIKKKMQMLKLDKENAIDRAEQAESD----KKAAEEKCKQVEEELTHLQKKLKGTEDE 239
ME K+ + + ++D ++ ++ KK E ++E +L+H + + +
Sbjct: 1583 MEQAKRNHLRMVDSLQTSLDAETRSRNEALRVKKKMEGDLNEMEIQLSHANRMAAEAQKQ 1642
Query: 240 LDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXX 419
+ LKD Q +L+ + + D + ++A + RR L++ EL+ +
Sbjct: 1643 VKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAELEELRAVVEQTERSRKLA 1702
Query: 420 XXXXXXXXRGMKVIENR---AMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLV 581
++++ ++ + ++KM+ QL+ A + R EE A+K +
Sbjct: 1703 EQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAVQECRNAEEKAKKAI 1759
Score = 37.7 bits (86), Expect = 0.011
Identities = 34/131 (25%), Positives = 58/131 (43%), Gaps = 26/131 (19%)
Frame = +3
Query: 72 MEAIKKKMQMLKLDKENAIDRAEQ-----AESDKKAAEEKCKQVEEELTHLQKK----LK 224
+E +KK M+ D ++ +D AEQ + + E + +++E EL QK+ +K
Sbjct: 1779 LERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQKLEARVRELENELEAEQKRNAESVK 1838
Query: 225 GTEDELDKYSE-------------NLKDAQEKLELSEK----KASDAEGDVAALNRRIQL 353
G + E L+D +KL+L K +A +AE + +
Sbjct: 1839 GMRKSERRIKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQAEEAEEQANTNLSKFRK 1898
Query: 354 VEEELDRAQER 386
V+ ELD A+ER
Sbjct: 1899 VQHELDEAEER 1909
Score = 37.4 bits (85), Expect = 0.015
Identities = 25/93 (26%), Positives = 45/93 (47%)
Frame = +3
Query: 84 KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSENL 263
+K+M +K + D E++E+ +K EEK + +E LQ +++ +D NL
Sbjct: 846 EKEMATMKEEFGRVKDALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQD-------NL 898
Query: 264 KDAQEKLELSEKKASDAEGDVAALNRRIQLVEE 362
DA+E+ + K E V + R++ EE
Sbjct: 899 ADAEERCDQLIKNKIQLEAKVKEMTERLEDEEE 931
Score = 36.6 bits (83), Expect = 0.025
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Frame = +3
Query: 72 MEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVEEEL--------------TH 206
+E K+K++ LKL +E+ +D E+DK+ +E+ K+ + EL +
Sbjct: 1048 LERAKRKLEGDLKLTQESIMD----LENDKQQLDERLKKKDFELNALNARIEDEQALGSQ 1103
Query: 207 LQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRA 377
LQKKLK + +++ E L+ + EK SD L+R ++ + E L+ A
Sbjct: 1104 LQKKLKELQARIEELEEELEAERTARAKVEKLRSD-------LSRELEEISERLEEA 1153
>gi|16716511|ref|NP_444434.1| (NM_053204) Rab6-interacting protein 2
[Mus musculus]
Length = 1120
Score = 40.8 bits (94), Expect = 0.001
Identities = 26/87 (29%), Positives = 51/87 (57%), Gaps = 8/87 (9%)
Frame = +3
Query: 72 MEAIKKKMQMLKLDKEN---AIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDEL 242
M ++K++++ L+ D N A+ E+A +DK+ E+ K+ + + + ++E+
Sbjct: 594 MSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRD------RDEREKQEEI 647
Query: 243 DKYSENLKDAQEKL-----ELSEKKAS 308
D Y ++LKD +EK+ +LSEK+AS
Sbjct: 648 DTYKKDLKDLREKVSLLQGDLSEKEAS 674
Score = 35.4 bits (80), Expect = 0.055
Identities = 34/179 (18%), Positives = 79/179 (43%), Gaps = 18/179 (10%)
Frame = +3
Query: 84 KKKMQMLKLDKENAIDRAEQAESDKKAAEE---KCKQVEEELTHLQKKLKGTEDELDKYS 254
+KK + LK+ E+ + +A +A + +A+ E + +Q+E E++ + + + E+D+
Sbjct: 705 QKKEECLKM--ESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLL 762
Query: 255 ENLKDAQEKLELSEKKASDAEG-----------DVAALNRRIQLVEEE----LDRAQERX 389
E LK+ + + +KK ++ E VA L + Q+ +++ L+ A+ R
Sbjct: 763 EILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRRE 822
Query: 390 XXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEV 566
++ +E + + +EM L + + A+++ EE+
Sbjct: 823 DSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEEL 881
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 7,155,815
Number of sequences in database: 15,330
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10591255
Number of Sequences: 15330
Number of extensions: 202051
Number of successful extensions: 1603
Number of sequences better than 10.0: 199
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 1341
length of query: 405
length of database: 7,155,815
effective HSP length: 47
effective length of query: 357
effective length of database: 6,435,305
effective search space: 2297403885
effective search space used: 2297403885
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)