Search to RefSeq (Human) database
Query= 20030531C-000104 (20030531C-000104) 20030531C-000104
(1059 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,244 sequences; 10,046,356 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|19743808|ref|NP_003716.2| (NM_003725) 3-hydroxysteroid epime... 462 e-130
Alignment gi|21361105|ref|NP_003699.2| (NM_003708) microsomal NAD+-depend... 359 2e-99
Alignment gi|22507405|ref|NP_683695.1| (NM_148897) orphan short-chain deh... 298 3e-81
Alignment gi|22758144|ref|NP_005762.2| (NM_005771) NADP-dependent retinol... 286 1e-77
Alignment gi|4506463|ref|NP_002896.1| (NM_002905) retinol dehydrogenase 5... 250 1e-66
Alignment gi|17738292|ref|NP_004042.1| (NM_004051) 3-hydroxybutyrate dehy... 189 3e-48
Alignment gi|31542941|ref|NP_000187.2| (NM_000196) hydroxysteroid (11-bet... 150 2e-36
Alignment gi|4504503|ref|NP_002144.1| (NM_002153) hydroxysteroid (17-beta... 149 4e-36
Alignment gi|20149619|ref|NP_056325.2| (NM_015510) DKFZP566O084 protein [... 84 1e-16
Alignment gi|7706318|ref|NP_057113.1| (NM_016029) CGI-86 protein [Homo sa... 76 4e-14
>gi|19743808|ref|NP_003716.2| (NM_003725) 3-hydroxysteroid epimerase;
oxidative 3-alpha-hydroxysteroid-dehydrogenase;
3(alpha->beta)-hydroxysteroid epimerase; retinol
dehydrogenase; oxidoreductase; NAD+ -dependent 3
alpha-hydroxysteroid dehydrogenase [Homo sapiens]
Length = 317
Score = 462 bits (1188), Expect = e-130
Identities = 226/297 (76%), Positives = 253/297 (85%)
Frame = +3
Query: 168 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 347
MW WYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD RGLRVLAAC
Sbjct: 1 MWLYLAAFVGLYYLLHWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDARGLRVLAAC 60
Query: 348 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 527
LTE+GA+QLR QTSDRLETV LDVTK ESIAAATQWVKE VGDRGLWGLVNNAG P+
Sbjct: 61 LTEKGAEQLRGQTSDRLETVTLDVTKMESIAAATQWVKEHVGDRGLWGLVNNAGILTPIT 120
Query: 528 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 707
+ EWL TE ++ LKVNLIGV +VTLSMLPLV++A+GRIVNVSSILGRVAFF Y SK
Sbjct: 121 LCEWLNTEDSMNMLKVNLIGVIQVTLSMLPLVRRARGRIVNVSSILGRVAFFVGGYCVSK 180
Query: 708 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 887
+GVEAFSD+LR E+QHFGVK+SIVEPGYFRTGMT++ +S E MKQ WKE P HIK+TYGQ
Sbjct: 181 YGVEAFSDILRREIQHFGVKISIVEPGYFRTGMTNMTQSLERMKQSWKEAPKHIKETYGQ 240
Query: 888 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1058
++FDA +++MK+GL +CSTNLNLVTDCMEHALTSVHPRTRYSAGWDA+FFFIPLSYL
Sbjct: 241 QYFDALYNIMKEGLLNCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAKFFFIPLSYL 297
>gi|21361105|ref|NP_003699.2| (NM_003708) microsomal NAD+-dependent
retinol dehydrogenase 4 [Homo sapiens]
Length = 317
Score = 359 bits (921), Expect = 2e-99
Identities = 174/297 (58%), Positives = 220/297 (73%)
Frame = +3
Query: 168 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 347
MW WYRERQ++SHL DKYVFITGCDSGFG LLARQLD RGLRVLAAC
Sbjct: 1 MWLYLAVFVGLYYLLHWYRERQVLSHLRDKYVFITGCDSGFGKLLARQLDARGLRVLAAC 60
Query: 348 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 527
LTE+GA+QLR QTSDRLETV LDVTKTES+AAA QWVKE V D+GLWGLVNNAG P
Sbjct: 61 LTEKGAEQLRGQTSDRLETVTLDVTKTESVAAAAQWVKECVRDKGLWGLVNNAGISLPTA 120
Query: 528 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 707
E L + + L VNL+GV +VTL++LPLV++A+GR+VNV S++GRV+ FG Y SK
Sbjct: 121 PNELLTKQDLLTILDVNLLGVIDVTLNLLPLVRRARGRVVNVFSVMGRVSLFGGGYCISK 180
Query: 708 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 887
+GVEAFSD LR EL +FGVKV+++EPGYF+T +T ++ ++ ++W +K+ YG+
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAMIEPGYFKTAVTSKERFLKSFLEIWDRSSPEVKEAYGE 240
Query: 888 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1058
KF Y +Q C+ +L+LVT+CMEHAL + HPRTRYSAGWDA+ ++P+SY+
Sbjct: 241 KFVADYKKSAEQMEQKCTQDLSLVTNCMEHALIACHPRTRYSAGWDAKLLYLPMSYM 297
>gi|22507405|ref|NP_683695.1| (NM_148897) orphan short-chain
dehydrogenase / reductase; retinol dehydrogenase similar
protein [Homo sapiens]
Length = 313
Score = 298 bits (764), Expect = 3e-81
Identities = 145/282 (51%), Positives = 200/282 (70%)
Frame = +3
Query: 213 RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 392
RW++ +V +L +KYVFITGCDSGFGNLLA+QL RG++VLAAC TE+G+Q+L++ TS
Sbjct: 12 RWFKNCNLVGNLSEKYVFITGCDSGFGNLLAKQLVDRGMQVLAACFTEEGSQKLQRDTSY 71
Query: 393 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 572
RL+T LLDVTK+ESI AA QWV+++VG++GLW LVNNAG P EWL + ++ +
Sbjct: 72 RLQTTLLDVTKSESIKAAAQWVRDKVGEQGLWALVNNAGVGLPSGPNEWLTKDDFVKVIN 131
Query: 573 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 752
VNL+G+ EVTL MLP+VK+A+GR+VN+SS GRVA G Y SK GVEAFSD +R EL
Sbjct: 132 VNLVGLIEVTLHMLPMVKRARGRVVNMSSSGGRVAVIGGGYCVSKFGVEAFSDSIRRELY 191
Query: 753 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 932
+FGVKV I+EPG +RT + + M+++W+ +P +D+YG+ +F Y D +K +
Sbjct: 192 YFGVKVCIIEPGNYRTAILGKENLESRMRKLWERLPQETRDSYGEDYFRIYTDKLKNIMQ 251
Query: 933 SCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1058
+ V + MEHA+ S PR RY+ G DA+ +IPL+ L
Sbjct: 252 VAEPRVRDVINSMEHAIVSRSPRIRYNPGLDAKLLYIPLAKL 293
>gi|22758144|ref|NP_005762.2| (NM_005771) NADP-dependent retinol
dehydrogenase/reductase; 3-alpha hydroxysteroid
dehydrogenase [Homo sapiens]
Length = 319
Score = 286 bits (733), Expect = 1e-77
Identities = 139/282 (49%), Positives = 196/282 (69%), Gaps = 1/282 (0%)
Frame = +3
Query: 216 WYRERQM-VSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 392
W R+ ++ + + DKY+FITGCDSGFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 393 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 572
RL TVLLDVT E++ QWVK +VG++GLWGL+NNAG L T+WL E + ++
Sbjct: 76 RLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIE 135
Query: 573 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 752
VNL G+ VTL+MLPLVKKAQGR++NVSS+ GR+A G Y+ SK+ VE F+D LR +++
Sbjct: 136 VNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSKYAVEGFNDSLRRDMK 195
Query: 753 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 932
FGV VS +EPG F+T + D K E +W+++ IK YG+ + + D +K S
Sbjct: 196 AFGVHVSCIEPGLFKTNLADPVKVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKS 255
Query: 933 SCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1058
+ +L+ V +CM+HALTS+ P+T Y+AG DA+ F+IPLS++
Sbjct: 256 YVNMDLSPVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHM 297
>gi|4506463|ref|NP_002896.1| (NM_002905) retinol dehydrogenase 5
(11-cis and 9-cis); retinol dehydrogenase 5 (11-cisand
9-cis) [Homo sapiens]
Length = 318
Score = 250 bits (639), Expect = 1e-66
Identities = 127/280 (45%), Positives = 184/280 (65%), Gaps = 1/280 (0%)
Frame = +3
Query: 222 RERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSDRLE 401
R+RQ + + +VFITGCDSGFG LLA QLD + RVLA+CLT GA+ L+ S
Sbjct: 19 RDRQSLP-ASNAFVFITGCDSGFGRLLALQLDQKSFRVLASCLTPSGAEDLQGVASSGFN 77
Query: 402 TVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLKVNL 581
T LLD+T +S A +WV+ V + GL+GLVNNAG + T WL + + L VN
Sbjct: 78 TTLLDITDPQSFQQAAKWVEMHVKEAGLFGLVNNAGVAGIIGPTPWLTRDDFQRVLNVNT 137
Query: 582 IGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQHFG 761
+G VTL++LPL+++A+GR++N++S+LGR+A G Y SK G+EAFSD LR ++ HFG
Sbjct: 138 MGPIGVTLALLPLLQQARGRVINITSVLGRLAANGGGYCVSKFGLEAFSDSLRRDVAHFG 197
Query: 762 VKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS-SC 938
++ SIVEPG+FRT +T+++ + ++ W +P + YG F Y + ++ ++ C
Sbjct: 198 IRESIVEPGFFRTPVTNLESLEKTLQACWARLPPATQAHYGGAFLTKYLKMQQRIMNLIC 257
Query: 939 STNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1058
+L V+ C+EHALT+ HPRTRYS GWDA+ ++P SYL
Sbjct: 258 DPDLTKVSRCLEHALTARHPRTRYSPGWDAKLLWLPASYL 297
>gi|17738292|ref|NP_004042.1| (NM_004051) 3-hydroxybutyrate
dehydrogenase precursor; (R)-3-hydroxybutyrate
dehydrogenase [Homo sapiens]
Length = 343
Score = 189 bits (480), Expect = 3e-48
Identities = 113/266 (42%), Positives = 160/266 (59%), Gaps = 11/266 (4%)
Frame = +3
Query: 246 LGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQ----GAQQLRKQTSDRLETVLL 413
+G K V +TGCDSGFG LA+ L +G V A CL + G ++L SDRL TV L
Sbjct: 53 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112
Query: 414 DVTKTESIAAATQWVKERVGD--RGLWGLVNNAG--TFHPLCITEWLKTETWIHTLKVNL 581
+V +E + + V+ + D +G+WGLVNNAG TF + E+ ET+ +VNL
Sbjct: 113 NVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGISTFGEV---EFTSLETYKQVAEVNL 169
Query: 582 IGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAF-FGAVYSSSKHGVEAFSDVLRCELQHF 758
G +T S LPL+++A+GR+VN+SS+LGR+A + Y +K GVEAFSD LR E+
Sbjct: 170 WGTVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPL 229
Query: 759 GVKVSIVEPGYF--RTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 932
GVKVS+VEPG F T + + K++W+E+P ++ YG+K+FD M+ S
Sbjct: 230 GVKVSVVEPGNFIAATSLYSPESIQAIAKKMWEELPEVVRKDYGKKYFDEKIAKMETYCS 289
Query: 933 SCSTNLNLVTDCMEHALTSVHPRTRY 1010
S ST+ + V D + HALT+ P TRY
Sbjct: 290 SGSTDTSPVIDAVTHALTATTPYTRY 315
>gi|31542941|ref|NP_000187.2| (NM_000196) hydroxysteroid (11-beta)
dehydrogenase 2 [Homo sapiens]
Length = 405
Score = 150 bits (378), Expect = 2e-36
Identities = 93/258 (36%), Positives = 134/258 (51%), Gaps = 5/258 (1%)
Frame = +3
Query: 261 VFITGCDSGFGNLLARQLDVRGLRVLAACL--TEQGAQQLRKQTSDRLETVLLDVTKTES 434
V ITGCDSGFG A++LD G VLA L GA +LR S RL + +D+TK
Sbjct: 85 VLITGCDSGFGKETAKKLDSMGFTVLATVLELNSPGAIELRTCCSPRLRLLQMDLTKPGD 144
Query: 435 IAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLKVNLIGVTEVTLSML 614
I+ ++ K GLWGLVNNAG + E T+ ++VN G E+T +L
Sbjct: 145 ISRVLEFTKAHTTSTGLWGLVNNAGHNEVVADAELSPVATFRSCMEVNFFGALELTKGLL 204
Query: 615 PLVKKAQGRIVNVSSILGRVAF--FGAVYSSSKHGVEAFSDVLRCELQHFGVKVSIVEPG 788
PL++ ++GRIV V S G + + GA Y +SK V D CEL +GVKVSI++PG
Sbjct: 205 PLLRSSRGRIVTVGSPAGDMPYPCLGA-YGTSKAAVALLMDTFSCELLPWGVKVSIIQPG 263
Query: 789 YFRT-GMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLSSCSTNLNLVTD 965
F+T + +V + + + + +P + YG+ + + H L ++L V D
Sbjct: 264 CFKTESVRNVGQWEKRKQLLLANLPQELLQAYGKDYIEHLHGQFLHSLRLAMSDLTPVVD 323
Query: 966 CMEHALTSVHPRTRYSAG 1019
+ AL + PR RY G
Sbjct: 324 AITDALLAARPRRRYYPG 341
>gi|4504503|ref|NP_002144.1| (NM_002153) hydroxysteroid (17-beta)
dehydrogenase 2 [Homo sapiens]
Length = 387
Score = 149 bits (375), Expect = 4e-36
Identities = 97/284 (34%), Positives = 144/284 (50%), Gaps = 4/284 (1%)
Frame = +3
Query: 219 YRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQG--AQQLRKQTSD 392
Y Q + + K V +TG D G G+ L + LD G V A L E G A++LR+ S
Sbjct: 71 YLSGQELLPVDQKAVLVTGGDCGLGHALCKYLDELGFTVFAGVLNENGPGAEELRRTCSP 130
Query: 393 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 572
RL + +D+TK I A V + DRGLW ++NNAG E L + +
Sbjct: 131 RLSVLQMDITKPVQIKDAYSKVAAMLQDRGLWAVINNAGVLGFPTDGELLLMTDYKQCMA 190
Query: 573 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFG-AVYSSSKHGVEAFSDVLRCEL 749
VN G EVT + LPL++K++GR+VNVSS+ G A Y SSK V FS V+R EL
Sbjct: 191 VNFFGTVEVTKTFLPLLRKSKGRLVNVSSMGGGAPMERLASYGSSKAAVTMFSSVMRLEL 250
Query: 750 QHFGVKVSIVEPGYFRTGMTDVQKSSEAM-KQVWKEVPAHIKDTYGQKFFDAYHDVMKQG 926
+G+KV+ ++PG F T + E + K + +PA +++ YGQ + A + +
Sbjct: 251 SKWGIKVASIQPGGFLTNIAGTSDKWEKLEKDILDHLPAEVQEDYGQDYILAQRNFLLLI 310
Query: 927 LSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1058
S S + + V ++HA+ + P Y+ G A + YL
Sbjct: 311 NSLASKDFSPVLRDIQHAILAKSPFAYYTPGKGAYLWICLAHYL 354
>gi|20149619|ref|NP_056325.2| (NM_015510) DKFZP566O084 protein [Homo
sapiens]
Length = 325
Score = 84.3 bits (207), Expect = 1e-16
Identities = 60/210 (28%), Positives = 106/210 (49%), Gaps = 11/210 (5%)
Frame = +3
Query: 213 RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRV---------LAACLTEQGA 365
+W R + ++L + V ITG SG G A+ G ++ L + E A
Sbjct: 42 QWVRGK---AYLRNAVVVITGATSGLGKECAKVFYAAGAKLVLCGRNGGALEELIRELTA 98
Query: 366 QQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLK 545
K + + V D+T + +I AA + + G + LVNNAG + I +
Sbjct: 99 SHATKVQTHKPYLVTFDLTDSGAIVAAAAEILQCFGYVDI--LVNNAGISYRGTIMD-TT 155
Query: 546 TETWIHTLKVNLIGVTEVTLSMLP-LVKKAQGRIVNVSSILGRVAF-FGAVYSSSKHGVE 719
+ ++ N G +T ++LP ++K+ QG IV +SSI G+++ F + Y++SKH +
Sbjct: 156 VDVDKRVMETNYFGPVALTKALLPSMIKRRQGHIVAISSIQGKMSIPFRSAYAASKHATQ 215
Query: 720 AFSDVLRCELQHFGVKVSIVEPGYFRTGMT 809
AF D LR E++ + ++V+++ PGY T ++
Sbjct: 216 AFFDCLRAEMEQYEIEVTVISPGYIHTNLS 245
>gi|7706318|ref|NP_057113.1| (NM_016029) CGI-86 protein [Homo
sapiens]
Length = 339
Score = 75.9 bits (185), Expect = 4e-14
Identities = 61/211 (28%), Positives = 110/211 (51%), Gaps = 11/211 (5%)
Frame = +3
Query: 246 LGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSDR-------LET 404
L D V++TG SG G LA QL G+ ++ + ++++++ + +
Sbjct: 48 LTDMVVWVTGASSGIGEELAYQLSKLGVSLVLSARRVHELERVKRRCLENGNLKEKDILV 107
Query: 405 VLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAG-TFHPLCITEWLKTETWIHTLKVNL 581
+ LD+T T S AAT+ V + G + LVNN G + LC+ L + + +++N
Sbjct: 108 LPLDLTDTGSHEAATKAVLQEFGRIDI--LVNNGGMSQRSLCMDTSL--DVYRKLIELNY 163
Query: 582 IGVTEVTLSMLP-LVKKAQGRIVNVSSILGRVAF-FGAVYSSSKHGVEAFSDVLRCELQH 755
+G +T +LP ++++ QG+IV V+SILG ++ Y +SKH + F + LR EL
Sbjct: 164 LGTVSLTKCVLPHMIERKQGKIVTVNSILGIISVPLSIGYCASKHALRGFFNGLRTELAT 223
Query: 756 F-GVKVSIVEPGYFRTGMTDVQKSSEAMKQV 845
+ G+ VS + PG ++ + + + E K +
Sbjct: 224 YPGIIVSNICPGPVQSNIVENSLAGEVTKTI 254
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 10,046,356
Number of sequences in database: 19,244
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22883077
Number of Sequences: 19244
Number of extensions: 565902
Number of successful extensions: 2685
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 1507
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 2295
length of query: 353
length of database: 10,046,356
effective HSP length: 47
effective length of query: 305
effective length of database: 9,141,888
effective search space: 2788275840
effective search space used: 2788275840
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search to RefSeq (Mouse) database
Query= 20030531C-000104 (20030531C-000104) 20030531C-000104
(1059 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
15,330 sequences; 7,155,815 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|7305165|ref|NP_038814.1| (NM_013786) hydroxysteroid (17-beta... 426 e-119
Alignment gi|8567342|ref|NP_059501.1| (NM_017473) retinol dehydrogenase 7... 378 e-105
Alignment gi|20147789|ref|NP_536684.1| (NM_080436) retinol dehydrogenase ... 376 e-104
Alignment gi|27544937|ref|NP_671755.1| (NM_147222) retinol dehydrogenase ... 374 e-104
Alignment gi|23680945|ref|NP_694773.1| (NM_153133) cis-retinol/androgen d... 372 e-103
Alignment gi|6677697|ref|NP_033066.1| (NM_009040) retinol dehydrogenase 6... 370 e-103
Alignment gi|21703846|ref|NP_663399.1| (NM_145424) cis-retinol/3alpha hyd... 361 e-100
Alignment gi|28076941|ref|NP_081577.1| (NM_027301) retinol dehydrogenase ... 296 1e-80
Alignment gi|30425272|ref|NP_780721.1| (NM_175512) RIKEN cDNA C730025I08 ... 293 7e-80
Alignment gi|19549323|ref|NP_598767.1| (NM_134006) retinol dehydrogenase ... 275 3e-74
>gi|7305165|ref|NP_038814.1| (NM_013786) hydroxysteroid (17-beta)
dehydrogenase 9; hydroxysteroid 17-beta dehydrogenase 9
[Mus musculus]
Length = 317
Score = 426 bits (1094), Expect = e-119
Identities = 209/297 (70%), Positives = 239/297 (80%)
Frame = +3
Query: 168 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 347
MW RWYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWFYLVTLVGLYHLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 348 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 527
LTE+GA++LR +TSDRLETV+LDVTKTESI AATQWVKERVGDRGLWGLVNNAG P
Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGDRGLWGLVNNAGVLQPFA 120
Query: 528 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 707
EW + E ++ +VNLIG+T+VT+SML LVKKA+GRIVNVSS LGRVA FG YS SK
Sbjct: 121 YIEWYRPEDYMPIFQVNLIGLTQVTISMLFLVKKARGRIVNVSSALGRVALFGGFYSCSK 180
Query: 708 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 887
+GVEAFSDVLR E+Q FGVKVSI+EPG F+T MTD + + E K+VW+ P HIK++YGQ
Sbjct: 181 YGVEAFSDVLRHEVQDFGVKVSIIEPGSFKTEMTDAELTIERTKKVWEAAPEHIKESYGQ 240
Query: 888 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1058
+FFD + K+ L CS NL+LVTDCMEHALTS HPRTRYSAGWDA+FFFIPLSYL
Sbjct: 241 QFFDDFCSTTKRELMKCSRNLSLVTDCMEHALTSTHPRTRYSAGWDAKFFFIPLSYL 297
>gi|8567342|ref|NP_059501.1| (NM_017473) retinol dehydrogenase 7;
cis-Retinol/3alpha-hydroxysterol short-chain
dehydrogenase [Mus musculus]
Length = 316
Score = 378 bits (970), Expect = e-105
Identities = 183/297 (61%), Positives = 234/297 (78%)
Frame = +3
Query: 168 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 347
MW R++RERQ+VSHL DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVALVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 348 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 527
LTE+GA+QLR +TSDRLETV+LDVTKTESI AATQWVKERVG+RGLWGLVNNAG
Sbjct: 61 LTEKGAEQLRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGIC-VFA 119
Query: 528 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 707
I EWLK E + + L VNL+G+ EVTLSMLPLV+KA+GR+VN+SS +GRV+ G Y SK
Sbjct: 120 INEWLKKEDFANILDVNLLGMIEVTLSMLPLVRKARGRVVNISSSMGRVSLCGGGYCISK 179
Query: 708 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 887
+GVEAFSD LR E+ +FGVKV+I+EPG FRT +++ ++ S +++++W + + +K+ Y +
Sbjct: 180 YGVEAFSDSLRREISYFGVKVAIIEPGGFRTNVSNYERLSHSIEKLWDQTSSEVKEVYDK 239
Query: 888 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1058
F D+Y ++ +CS +L++VTDCMEHALT+ HPRTRYSAGWDA+ F++PLSY+
Sbjct: 240 NFLDSYIKAIQSLTDTCSDDLSVVTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYM 296
>gi|20147789|ref|NP_536684.1| (NM_080436) retinol dehydrogenase 1 (all
trans); retinol dehydrogenase 1 (11-cis) [Mus musculus]
Length = 317
Score = 376 bits (965), Expect = e-104
Identities = 185/297 (62%), Positives = 229/297 (76%)
Frame = +3
Query: 168 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 347
MW R++RERQ+VSHL KYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVALVGLWTLLRFFRERQVVSHLQVKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 348 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 527
LTE+GA++LR +TSDRLETV+LDVTKTESI AATQWVKERVG+RGLWGLVNNAG P
Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISTPSG 120
Query: 528 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 707
EW+K + + L VNL+G+ EVTLSMLPLV+KA+GR+VNVSS++GR++FFG Y SK
Sbjct: 121 PNEWMKKQDFARVLDVNLLGMIEVTLSMLPLVRKARGRVVNVSSVMGRMSFFGGGYCISK 180
Query: 708 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 887
+GVEAFSD LR EL +FGVKV+I+EPG F+T +T + S K +W + + +K+ YG+
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAIIEPGGFKTCVTSSDRLSSNTKMIWDKASSEVKEIYGE 240
Query: 888 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1058
KF Y + + C+ +L++VTDCMEHALT+ HPRTRYSAGWDA+F F+PLSYL
Sbjct: 241 KFLLFYLKNLNELDKRCNKDLSVVTDCMEHALTARHPRTRYSAGWDAKFLFLPLSYL 297
>gi|27544937|ref|NP_671755.1| (NM_147222) retinol dehydrogenase
similar protein 2 [Mus musculus]
Length = 318
Score = 374 bits (960), Expect = e-104
Identities = 185/298 (62%), Positives = 230/298 (77%), Gaps = 1/298 (0%)
Frame = +3
Query: 168 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 347
MW R++RERQ+VSHL DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVPLVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 348 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 527
LTE+GA++LR +TSDRLETV+LDVTKTESI AATQWVKERVG+RGLWGLVNNAG PL
Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISVPLG 120
Query: 528 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFG-AVYSSS 704
+++W+ + + L VNL+G+ EVTL+MLPLV+KA+GR+VNVSSI+GRV+ G Y S
Sbjct: 121 LSQWMNKQNFASVLDVNLLGMIEVTLTMLPLVRKARGRVVNVSSIMGRVSLHGNGGYCIS 180
Query: 705 KHGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYG 884
K+GVEAFSD LR EL +FGVKV+I+EPG+F TGM + S + +W + + I++ YG
Sbjct: 181 KYGVEAFSDSLRRELSYFGVKVAIIEPGFFLTGMASSARLSSNTQMLWDQTSSEIREIYG 240
Query: 885 QKFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1058
+K+ Y + + C+ +L+LVTDCMEHALT+ HPRTRYSAGWDA+ FFIPLSYL
Sbjct: 241 EKYLAFYLKSLNELDKRCNKDLSLVTDCMEHALTACHPRTRYSAGWDAKLFFIPLSYL 298
>gi|23680945|ref|NP_694773.1| (NM_153133) cis-retinol/androgen
dehydrogenase type 3 [Mus musculus]
Length = 317
Score = 372 bits (955), Expect = e-103
Identities = 180/297 (60%), Positives = 228/297 (76%)
Frame = +3
Query: 168 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 347
MW ++RERQ+VS+L DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLFLVALVGLWTLLCFFRERQVVSYLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 348 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 527
LTE+GA++LR +TSDRLETV+LDVTKTESI ATQWVKERVG+RGLWGLVNNAG P
Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVTATQWVKERVGNRGLWGLVNNAGISIPSG 120
Query: 528 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 707
EW+K + + H L VNL+G+ EVTLSMLPLV+KA+GR++NV+S+LGRV+ G Y SK
Sbjct: 121 PNEWMKKQDFAHVLDVNLLGLIEVTLSMLPLVRKARGRVINVASVLGRVSLCGGAYCISK 180
Query: 708 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 887
+GVEAFSD LR EL +FGVKV+I+EPG+F TG+T + + +W + + I++ YG+
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAIIEPGFFLTGVTSSARLCSNTQMLWDQTSSEIREIYGE 240
Query: 888 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1058
K+ +Y + + C+ +L+LVTDCMEHALT+ HPRTRYSAGWDA+ F++PLSYL
Sbjct: 241 KYLASYLKRLNELDKRCNKDLSLVTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYL 297
>gi|6677697|ref|NP_033066.1| (NM_009040) retinol dehydrogenase 6;
retinol dehydrogenase type 6 [Mus musculus]
Length = 317
Score = 370 bits (950), Expect = e-103
Identities = 180/297 (60%), Positives = 226/297 (75%)
Frame = +3
Query: 168 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 347
MW R++R RQ+VSHL DKYVFITGCDSGFG LLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVALVGLWTLLRFFRVRQVVSHLQDKYVFITGCDSGFGTLLARQLDRRGMRVLAAC 60
Query: 348 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 527
LTE+GA++LR +TSDRLETV+LDVTKTESI ATQWVKE VG+RGLWGLVNNAG P
Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVTATQWVKEHVGNRGLWGLVNNAGISTPSG 120
Query: 528 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 707
EW+K + + H L VNL+G+ EVTLSMLPLV+KA+GR+VNVSS++GRV+ FG Y SK
Sbjct: 121 PNEWMKKQDFAHVLDVNLLGMIEVTLSMLPLVRKARGRVVNVSSVMGRVSLFGGGYCISK 180
Query: 708 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 887
+GVEAFSD LR EL +FGVKV+I+EPG+F TG+T + + +W + + I++ YG+
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAIIEPGFFLTGVTSSARLCSNTQMLWDQTSSEIREIYGE 240
Query: 888 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1058
K+ +Y + + C+ +L+ VTDCMEHALT+ HPRTRYSAGWDA+ F++PLSYL
Sbjct: 241 KYLASYLKRLNKLDKRCNKDLSGVTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYL 297
>gi|21703846|ref|NP_663399.1| (NM_145424) cis-retinol/3alpha
hydroxysterol short-chain dehydrogenase-like [Mus
musculus]
Length = 318
Score = 361 bits (927), Expect = e-100
Identities = 179/298 (60%), Positives = 227/298 (76%), Gaps = 1/298 (0%)
Frame = +3
Query: 168 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 347
MW R++RERQ+V HL DKYVFITGC SGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYMVALLGLWMLLRFFRERQVVDHLQDKYVFITGCGSGFGNLLARQLDRRGMRVLAAC 60
Query: 348 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 527
E+GA++LR++TS+RLETV+LDVTKTESI AATQWVKERVG+RGLWGLVNNAG P
Sbjct: 61 RKEEGAEELRRKTSERLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISVPSG 120
Query: 528 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGA-VYSSS 704
EW+K + + L VNL+G+ EVTLSMLPLV+KA+GR+VNVSSILGRV+ G+ Y S
Sbjct: 121 PNEWMKKQDFASVLDVNLLGLIEVTLSMLPLVRKARGRVVNVSSILGRVSLGGSGGYCIS 180
Query: 705 KHGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYG 884
K+G+EAFSD LR EL++FGVKV+I+EPG+F TGM + ++ +W + + I++ YG
Sbjct: 181 KYGIEAFSDSLRRELRYFGVKVAIIEPGFFLTGMASSARLCSNIQMLWDQTSSEIREIYG 240
Query: 885 QKFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1058
+K+ +Y + + C+ +L++VTDCMEHALT+ HPRTRYSAGWDA+ FF PLSYL
Sbjct: 241 EKYLASYLKNLNELDQRCNKDLSVVTDCMEHALTACHPRTRYSAGWDAKLFFTPLSYL 298
>gi|28076941|ref|NP_081577.1| (NM_027301) retinol dehydrogenase
similar protein [Mus musculus]
Length = 313
Score = 296 bits (757), Expect = 1e-80
Identities = 141/282 (50%), Positives = 201/282 (71%)
Frame = +3
Query: 213 RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 392
RW++ +V +L +KYVFITGCDSGFGNLLA+QL RG++VLAACLTE+GAQ+L + TS
Sbjct: 12 RWFKNCNLVKNLSEKYVFITGCDSGFGNLLAKQLVDRGMKVLAACLTEEGAQKLLQDTSH 71
Query: 393 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 572
+L+T LLDVTK+E++ A QWV+++VG++GLW LVNNAG P EWL + ++ +
Sbjct: 72 QLQTFLLDVTKSENVKEAAQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTIKDFVKVIN 131
Query: 573 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 752
+NL+G+ +VTL+MLP++KKA+GR+VN+SS GRVA FG Y SK GVEAFSD +R EL
Sbjct: 132 INLVGLIDVTLNMLPMIKKARGRVVNMSSSGGRVAIFGGGYCVSKFGVEAFSDSIRRELH 191
Query: 753 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 932
FGVKVSI+EPG ++T + + MK++W +P +D+YG+++F Y + +
Sbjct: 192 FFGVKVSIIEPGNYKTSILGQEALESRMKKLWDRLPQETRDSYGEEYFQTYTKKLVNLMR 251
Query: 933 SCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1058
S ++ VT+ MEHA+ S PR RY+ G D +F ++ L+ L
Sbjct: 252 SAEPRISDVTNSMEHAIVSRSPRIRYNPGLDVKFLYLTLAKL 293
>gi|30425272|ref|NP_780721.1| (NM_175512) RIKEN cDNA C730025I08 gene;
similar to retinol dehydrogenase homolog [Rattus
norvegicus] [Mus musculus]
Length = 319
Score = 293 bits (751), Expect = 7e-80
Identities = 142/280 (50%), Positives = 197/280 (69%)
Frame = +3
Query: 219 YRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSDRL 398
Y+ + ++ + DKYVFITGCD+GFGNL AR D +G RV+AACLTE G+ L+ +TS+RL
Sbjct: 18 YKGQLKIADIADKYVFITGCDTGFGNLAARTFDKKGFRVIAACLTESGSAALKAKTSERL 77
Query: 399 ETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLKVN 578
TVLLDVT E++ QWVK VG++GLWGL+NNAG L T+WL + + ++VN
Sbjct: 78 HTVLLDVTDPENVKKTAQWVKSHVGEKGLWGLINNAGVLGVLAPTDWLTVDDYREPIEVN 137
Query: 579 LIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQHF 758
L G+ VTL+MLPLVKKA+GR++NVSSI GR+AF G Y+ SK+ VE F+D LR +++ F
Sbjct: 138 LFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFGGGGYTPSKYAVEGFNDSLRRDMKAF 197
Query: 759 GVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLSSC 938
GV VS +EPG F+T + D K++E +WK + IK YG+ + + +K SS
Sbjct: 198 GVHVSCIEPGLFKTELADPIKTTEKKLAIWKHLSPDIKQQYGEGYIEKSLHRLKSNTSSV 257
Query: 939 STNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1058
+ +L+LV CM+HALTS+ P+TRY AG DA+ F+IPLS++
Sbjct: 258 NLDLSLVVGCMDHALTSLFPKTRYIAGKDAKTFWIPLSHM 297
>gi|19549323|ref|NP_598767.1| (NM_134006) retinol dehydrogenase 5;
retinol dehydrogenase type 5; 9-cis-retinol
dehydrogenase; 11-cis retinol dehydrogenase [Mus
musculus]
Length = 318
Score = 275 bits (703), Expect = 3e-74
Identities = 137/280 (48%), Positives = 190/280 (66%), Gaps = 1/280 (0%)
Frame = +3
Query: 222 RERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSDRLE 401
R+RQ + D ++FITGCDSGFG LLA QLD +G +VLA CLT GA+ L++ S RL
Sbjct: 19 RDRQSLP-ASDAFIFITGCDSGFGRLLALQLDQKGFQVLAGCLTPSGAEDLQQMASSRLH 77
Query: 402 TVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLKVNL 581
T LLD+T +++ +WVK RVG+ GL+GLVNNAG + T WL + + L VN
Sbjct: 78 TTLLDITDPQNVQQVAKWVKTRVGETGLFGLVNNAGVAGIIGPTPWLTQDDFQRVLSVNT 137
Query: 582 IGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQHFG 761
+G VTL++LPL+++A+GR+VN++S+LGR+A G Y SK G+EAFSD LR ++ FG
Sbjct: 138 LGPIGVTLALLPLLQQARGRVVNITSVLGRIAANGGGYCVSKFGLEAFSDSLRRDMAPFG 197
Query: 762 VKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS-SC 938
V+VSIVEPG+FRT +T+++ +K W +P I+ YG+ F D Y V ++ ++ C
Sbjct: 198 VQVSIVEPGFFRTPVTNLESLESTLKACWARLPPAIQAHYGEAFLDTYLRVQRRIMNLIC 257
Query: 939 STNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1058
L VT C+EHALT+ HPRTRYS GWDA+ ++P SYL
Sbjct: 258 DPELTKVTSCLEHALTARHPRTRYSPGWDAKLLWLPASYL 297
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 7,155,815
Number of sequences in database: 15,330
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16258270
Number of Sequences: 15330
Number of extensions: 397925
Number of successful extensions: 1709
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1679
length of query: 353
length of database: 7,155,815
effective HSP length: 47
effective length of query: 305
effective length of database: 6,435,305
effective search space: 1962768025
effective search space used: 1962768025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)