Animal-Genome cDNA Clone 20030531/20030531C-0/20030531C-000169


Query

>20030531C-000169 (20030531C-000169) 20030531C-000169
GGCTCATTCG CGCGTTAGAA GGCTCAGGCC GTTGTGCTGT GCTGTCTTCC
CGCCTGCGCC AGGGACCTGC CCAACTCAGT GGTGACCATG GCATCAGACG
AGGGCAAACT TTTCGTTGGA GGGCTGAGCT TTGACACCAA TGAGCAGTCG
CTGGAGCAGG TCTTCTCAAA ATATGGGCAG ATCTCAGAAG TGGTAGTAGT
GAAGGACAGG GAGACCCAGC GATCGAGGGG CTTTGGGTTT GTCACCTTTG
AGAACATTGA TGACGCCAAG GACGCTATGA TGGCCATGAA CGGGAAGTCT
GTGGATGGGC GGCAGATCCG GGTTGACCAG GCCGGCAAGT CATCTGATAA
CCGATCCCGT GGGTACCGAG GTGGCTCCTC GGGGGGCCGG GGCTTCTTCC
GTGGGGGCCG AGGCCGGGGC CGTGGGTTCT CCAGAGGAGG AGGGGATCGA
GGCTATGGTG GTAGCCGGTT CGAGTCCAGG AGTGGGGGCT ATGGCGGCTC
CAGGGACTAC TACAGCAGCC GGAGTCAGGG TGGCGGCTAT GGTGACCGGA
GCTCAGGCGG GTCCTACAGA GACAGCTACG ACAGTTACGC TACACACAAC
GAGTAAAAAT CCTGCTCAAG ATCGTCCTTC CAATGGCTGT ATATTTAAAG
ATTTTGGGAG CTCCGCTGAA TCGTTAATGT GTAGTGAATC CACCTCCTTG
TACCCACTTT TGTAGTCTTA TCAGTTCCTA TCTTGTCAAA CACAGCCTGA
CTGCTTCTGA CCCCAGATGG CCTCATTATT ACACTTTTCT TTTTAAAGAA
GTGCCATCTG TTTTTGAGGA TTTTGAACAT GTTTTGCAAA GCACTTCAGG
TTTTACTTTT TATCGTGAGC CATGAGCTTT TTAAAAAAAT CATTGAGGGT
TGCGAGAGTT TGAGTTTGGG GTTGTGTTGC CTTTTTTCTC TTTTTCGTGG
GGGTCGGCCC C

Search to RefSeq (Human) database

Query= 20030531C-000169 (20030531C-000169) 20030531C-000169
         (961 letters)

Database: RefSeq (Homo Sapiens/Amino Acid)
           19,244 sequences; 10,046,356 total letters

Searching..................................................done

                                                                               Score     E
            Sequences producing significant alignments:                        (bits)  Value

Alignment   gi|4502847|ref|NP_001271.1| (NM_001280) cold inducible RNA bind...   174  8e-44
Alignment   gi|5803137|ref|NP_006734.1| (NM_006743) RNA binding motif prote...   127  1e-29
Alignment   gi|21361809|ref|NP_062556.2| (NM_019610) hypothetical protein 6...   109  3e-24
Alignment   gi|4504451|ref|NP_002130.1| (NM_002139) RNA binding motif prote...   108  6e-24
Alignment   gi|8850217|ref|NP_055284.2| (NM_014469) testes-specific heterog...    99  3e-21
Alignment   gi|4826974|ref|NP_005049.1| (NM_005058) RNA binding motif prote...    97  2e-20
Alignment   gi|21699056|ref|NP_659408.1| (NM_144971) hypothetical protein M...    88  1e-17
Alignment   gi|4759098|ref|NP_004584.1| (NM_004593) splicing factor, argini...    86  4e-17
Alignment   gi|9558733|ref|NP_037425.1| (NM_013293) transformer-2 alpha; ht...    82  4e-16
Alignment   gi|14043072|ref|NP_112533.1| (NM_031243) heterogeneous nuclear ...    75  9e-14


>gi|4502847|ref|NP_001271.1| (NM_001280) cold inducible RNA binding
           protein; cold inducible RNA-binding protein;
           glycine-rich RNA binding protein; Cold-inducible
           RNA-binding protein [Homo sapiens]
          Length = 172

 Score =  174 bits (441), Expect = 8e-44
 Identities = 88/88 (100%), Positives = 88/88 (100%)
 Frame = +1

Query: 88  MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 267
           MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
Sbjct: 1   MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query: 268 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 351
           KDAMMAMNGKSVDGRQIRVDQAGKSSDN
Sbjct: 61  KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88



>gi|5803137|ref|NP_006734.1| (NM_006743) RNA binding motif protein 3
           [Homo sapiens]
          Length = 157

 Score =  127 bits (319), Expect = 1e-29
 Identities = 63/86 (73%), Positives = 75/86 (86%)
 Frame = +1

Query: 88  MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 267
           M+S+EGKLFVGGL+F+T+EQ+LE  FS +G ISEVVVVKDRETQRSRGFGF+TF N + A
Sbjct: 1   MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60

Query: 268 KDAMMAMNGKSVDGRQIRVDQAGKSS 345
             AM AMNG+S+DGRQIRVD AGKS+
Sbjct: 61  SVAMRAMNGESLDGRQIRVDHAGKSA 86



>gi|21361809|ref|NP_062556.2| (NM_019610) hypothetical protein 669
           [Homo sapiens]
          Length = 390

 Score =  109 bits (272), Expect = 3e-24
 Identities = 53/85 (62%), Positives = 68/85 (79%)
 Frame = +1

Query: 91  ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 270
           A   GKLF+GGL+ +TNE++LE VF KYG+I EV+++KDRET +SRGF FVTFE+  DAK
Sbjct: 4   ADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAK 63

Query: 271 DAMMAMNGKSVDGRQIRVDQAGKSS 345
           DA   MNGKS+DG+ I+V+QA K S
Sbjct: 64  DAARDMNGKSLDGKAIKVEQATKPS 88



>gi|4504451|ref|NP_002130.1| (NM_002139) RNA binding motif protein,
           X chromosome [Homo sapiens]
          Length = 391

 Score =  108 bits (270), Expect = 6e-24
 Identities = 53/85 (62%), Positives = 68/85 (79%)
 Frame = +1

Query: 91  ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 270
           A   GKLF+GGL+ +TNE++LE VF KYG+I EV+++KDRET +SRGF FVTFE+  DAK
Sbjct: 4   ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63

Query: 271 DAMMAMNGKSVDGRQIRVDQAGKSS 345
           DA   MNGKS+DG+ I+V+QA K S
Sbjct: 64  DAARDMNGKSLDGKAIKVEQATKPS 88



>gi|8850217|ref|NP_055284.2| (NM_014469) testes-specific
           heterogenous nuclear ribonucleoprotein G-T [Homo
           sapiens]
          Length = 392

 Score = 99.4 bits (246), Expect = 3e-21
 Identities = 49/83 (59%), Positives = 64/83 (77%)
 Frame = +1

Query: 91  ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 270
           A   GKLF+GGL+ +T+E++LE  F KYG+I EV+++KDRET +SRGF FVTFE+  DAK
Sbjct: 4   ADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63

Query: 271 DAMMAMNGKSVDGRQIRVDQAGK 339
            A   MNGKS+DG+ I+V QA K
Sbjct: 64  AAARDMNGKSLDGKAIKVAQATK 86



>gi|4826974|ref|NP_005049.1| (NM_005058) RNA binding motif protein,
           Y chromosome, family 1, member A1; RNA binding motif
           protein 1; RNA binding motif protein 2 [Homo sapiens]
          Length = 496

 Score = 97.1 bits (240), Expect = 2e-20
 Identities = 49/85 (57%), Positives = 65/85 (75%)
 Frame = +1

Query: 91  ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 270
           A   GKLF+GGL+ +TNE+ L+ VF K+G ISEV+++KDR T +SRGF F+TFEN  DAK
Sbjct: 4   ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAK 62

Query: 271 DAMMAMNGKSVDGRQIRVDQAGKSS 345
           +A   MNGKS+ G+ I+V+QA K S
Sbjct: 63  NAAKDMNGKSLHGKAIKVEQAKKPS 87



>gi|21699056|ref|NP_659408.1| (NM_144971) hypothetical protein
           MGC26641 [Homo sapiens]
          Length = 161

 Score = 87.8 bits (216), Expect = 1e-17
 Identities = 45/85 (52%), Positives = 61/85 (70%)
 Frame = +1

Query: 91  ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 270
           A   GK F+GGL+ + NE+  + VF+K+G ISEV+++KDR T +SRGF F TFEN  DAK
Sbjct: 4   ADRPGKHFIGGLNRENNEKMFKAVFAKHGPISEVLLIKDR-TSKSRGFAFTTFENTADAK 62

Query: 271 DAMMAMNGKSVDGRQIRVDQAGKSS 345
           +A   M GK +DG+ I+V+QA K S
Sbjct: 63  NAAKHMIGKPLDGKAIKVEQAKKPS 87



>gi|4759098|ref|NP_004584.1| (NM_004593) splicing factor,
           arginine/serine-rich 10 (transformer 2 homolog,
           Drosophila); splicing factor, arginine/serine-rich
           (transformer 2 Drosophila homolog) 10 [Homo sapiens]
          Length = 288

 Score = 85.9 bits (211), Expect = 4e-17
 Identities = 42/73 (57%), Positives = 55/73 (74%)
 Frame = +1

Query: 109 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 288
           L V GLS  T E+ L +VFSKYG I++V +V D++++RSRGF FV FEN+DDAK+A
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179

Query: 289 NGKSVDGRQIRVD 327
           NG  +DGR+IRVD
Sbjct: 180 NGMELDGRRIRVD 192



>gi|9558733|ref|NP_037425.1| (NM_013293) transformer-2 alpha; htra-2
           alpha; putative MAPK activating protein PM24 [Homo
           sapiens]
          Length = 282

 Score = 82.4 bits (202), Expect = 4e-16
 Identities = 43/73 (58%), Positives = 52/73 (70%)
 Frame = +1

Query: 109 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 288
           L V GLS  T E+ L +VFS+YG +S V VV D+ T RSRGF FV FE IDD+K+AM
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180

Query: 289 NGKSVDGRQIRVD 327
           NG  +DGR+IRVD
Sbjct: 181 NGMELDGRRIRVD 193



>gi|14043072|ref|NP_112533.1| (NM_031243) heterogeneous nuclear
           ribonucleoprotein A2/B1 isoform B1; heterogeneous
           nuclear ribonucleoprotein A2; heterogeneous nuclear
           ribonucleoprotein B1; nuclear ribonucleoprotein particle
           A2 protein [Homo sapiens]
          Length = 353

 Score = 74.7 bits (182), Expect = 9e-14
 Identities = 35/76 (46%), Positives = 55/76 (72%)
 Frame = +1

Query: 106 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 285
           KLF+GGLSF+T E+SL   + ++G++++ VV++D  ++RSRGFGFVTF ++ +  DA MA
Sbjct: 22  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV-DAAMA 80

Query: 286 MNGKSVDGRQIRVDQA 333
               S+DGR +   +A
Sbjct: 81  ARPHSIDGRVVEPKRA 96


 Score = 61.6 bits (148), Expect = 8e-10
 Identities = 29/76 (38%), Positives = 46/76 (60%)
 Frame = +1

Query: 106 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 285
           KLFVGG+  DT E  L   F +YG+I  + ++ DR++ + RGFGFVTF++  D  D ++
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD-HDPVDKIVL 171

Query: 286 MNGKSVDGRQIRVDQA 333
               +++G    V +A
Sbjct: 172 QKYHTINGHNAEVRKA 187


  Database: RefSeq (Homo Sapiens/Amino Acid)
    Posted date:  Jul 1, 2003  6:07 AM
  Number of letters in database: 10,046,356
  Number of sequences in database:  19,244

Lambda     K      H
   0.318    0.135    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16741638
Number of Sequences: 19244
Number of extensions: 366831
Number of successful extensions: 1466
Number of sequences better than 10.0: 172
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of query: 320
length of database: 10,046,356
effective HSP length: 47
effective length of query: 272
effective length of database: 9,141,888
effective search space: 2486593536
effective search space used: 2486593536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)

Search to RefSeq (Mouse) database

Query= 20030531C-000169 (20030531C-000169) 20030531C-000169
         (961 letters)

Database: RefSeq (Mus Musculus/Amino Acid)
           15,330 sequences; 7,155,815 total letters

Searching..................................................done

                                                                               Score     E
            Sequences producing significant alignments:                        (bits)  Value

Alignment   gi|6680946|ref|NP_031731.1| (NM_007705) cold inducible RNA bind...   173  1e-43
Alignment   gi|7949121|ref|NP_058089.1| (NM_016809) RNA binding motif prote...   130  7e-31
Alignment   gi|6755296|ref|NP_035382.1| (NM_011252) RNA binding motif prote...   108  4e-24
Alignment   gi|6677685|ref|NP_033059.1| (NM_009033) RNA binding motif prote...   105  3e-23
Alignment   gi|6755298|ref|NP_035383.1| (NM_011253) RNA binding motif prote...    90  2e-18
Alignment   gi|6677975|ref|NP_033212.1| (NM_009186) silica-induced gene 41 ...    86  3e-17
Alignment   gi|31559916|ref|NP_666242.2| (NM_146130) hypothetical protein M...    75  4e-14
Alignment   gi|7949053|ref|NP_058086.1| (NM_016806) heterogeneous nuclear r...    75  6e-14
Alignment   gi|6755478|ref|NP_035488.1| (NM_011358) splicing factor, argini...    74  1e-13
Alignment   gi|6754220|ref|NP_034577.1| (NM_010447) heterogeneous nuclear r...    73  2e-13


>gi|6680946|ref|NP_031731.1| (NM_007705) cold inducible RNA binding
           protein; cold inducible RNA-binding protein [Mus
           musculus]
          Length = 172

 Score =  173 bits (438), Expect = 1e-43
 Identities = 87/88 (98%), Positives = 88/88 (99%)
 Frame = +1

Query: 88  MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 267
           MASDEGKLFVGGLSFDTNEQ+LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
Sbjct: 1   MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query: 268 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 351
           KDAMMAMNGKSVDGRQIRVDQAGKSSDN
Sbjct: 61  KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88



>gi|7949121|ref|NP_058089.1| (NM_016809) RNA binding motif protein 3
           [Mus musculus]
          Length = 153

 Score =  130 bits (328), Expect = 7e-31
 Identities = 64/86 (74%), Positives = 76/86 (87%)
 Frame = +1

Query: 88  MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 267
           M+S+EGKLFVGGL+F+T+EQ+LE  FS +G ISEVVVVKDRETQRSRGFGF+TF N + A
Sbjct: 1   MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60

Query: 268 KDAMMAMNGKSVDGRQIRVDQAGKSS 345
            DAM AMNG+S+DGRQIRVD AGKS+
Sbjct: 61  SDAMRAMNGESLDGRQIRVDHAGKSA 86



>gi|6755296|ref|NP_035382.1| (NM_011252) RNA binding motif protein,
           X chromosome [Mus musculus]
          Length = 391

 Score =  108 bits (270), Expect = 4e-24
 Identities = 53/85 (62%), Positives = 68/85 (79%)
 Frame = +1

Query: 91  ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 270
           A   GKLF+GGL+ +TNE++LE VF KYG+I EV+++KDRET +SRGF FVTFE+  DAK
Sbjct: 4   ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63

Query: 271 DAMMAMNGKSVDGRQIRVDQAGKSS 345
           DA   MNGKS+DG+ I+V+QA K S
Sbjct: 64  DAARDMNGKSLDGKAIKVEQATKPS 88



>gi|6677685|ref|NP_033059.1| (NM_009033) RNA binding motif protein,
           X chromosome retrogene; hnRNP G [Mus musculus]
          Length = 388

 Score =  105 bits (262), Expect = 3e-23
 Identities = 50/83 (60%), Positives = 66/83 (79%)
 Frame = +1

Query: 91  ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 270
           A   GKLF+GGL+ +TNE++LE VF KYG+I E++++KDRET +SRGF FVT E+  DAK
Sbjct: 4   ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAK 63

Query: 271 DAMMAMNGKSVDGRQIRVDQAGK 339
           DA   MNGKS+DG+ I+V+QA K
Sbjct: 64  DAARDMNGKSLDGKAIKVEQATK 86



>gi|6755298|ref|NP_035383.1| (NM_011253) RNA binding motif protein,
           Y chromosome, family 1, member A1 [Mus musculus]
          Length = 380

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 36/81 (44%), Positives = 64/81 (78%)
 Frame = +1

Query: 103 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 282
           GK+F+GGL+  T +++L+++F ++G ++ V++++DRET++SRGF F+TF  + DAK+A+
Sbjct: 8   GKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVK 67

Query: 283 AMNGKSVDGRQIRVDQAGKSS 345
            MNG  +DG++I+V QA + S
Sbjct: 68  EMNGVILDGKRIKVKQARRPS 88



>gi|6677975|ref|NP_033212.1| (NM_009186) silica-induced gene 41 [Mus
           musculus]
          Length = 288

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 42/73 (57%), Positives = 55/73 (74%)
 Frame = +1

Query: 109 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 288
           L V GLS  T E+ L +VFSKYG I++V +V D++++RSRGF FV FEN+DDAK+A
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179

Query: 289 NGKSVDGRQIRVD 327
           NG  +DGR+IRVD
Sbjct: 180 NGMELDGRRIRVD 192



>gi|31559916|ref|NP_666242.2| (NM_146130) hypothetical protein
           MGC37309 [Mus musculus]
          Length = 379

 Score = 75.5 bits (184), Expect = 4e-14
 Identities = 36/82 (43%), Positives = 55/82 (66%)
 Frame = +1

Query: 106 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 285
           KLF+GGLSF+T + SL + F K+G +++ VV++D +T+RSRGFGFVT+  +++  DA M
Sbjct: 36  KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV-DAAMC 94

Query: 286 MNGKSVDGRQIRVDQAGKSSDN 351
                VDGR +   +A    D+
Sbjct: 95  ARPHKVDGRVVEPKRAVSREDS 116


 Score = 62.0 bits (149), Expect = 4e-10
 Identities = 29/76 (38%), Positives = 47/76 (61%)
 Frame = +1

Query: 106 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 285
           K+FVGG+  DT E +L   F KYG+I  + V++DR++ + RGF FVTF++  D  D ++
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD-HDTVDKIVV 185

Query: 286 MNGKSVDGRQIRVDQA 333
               +++G    V +A
Sbjct: 186 QKYHTINGHNCEVKKA 201



>gi|7949053|ref|NP_058086.1| (NM_016806) heterogeneous nuclear
           ribonucleoprotein A2; heterogenous nuclear
           ribonucleoprotein A2/B1 [Mus musculus]
          Length = 341

 Score = 74.7 bits (182), Expect = 6e-14
 Identities = 35/76 (46%), Positives = 55/76 (72%)
 Frame = +1

Query: 106 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 285
           KLF+GGLSF+T E+SL   + ++G++++ VV++D  ++RSRGFGFVTF ++ +  DA MA
Sbjct: 10  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV-DAAMA 68

Query: 286 MNGKSVDGRQIRVDQA 333
               S+DGR +   +A
Sbjct: 69  ARPHSIDGRVVEPKRA 84


 Score = 61.6 bits (148), Expect = 5e-10
 Identities = 29/76 (38%), Positives = 46/76 (60%)
 Frame = +1

Query: 106 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 285
           KLFVGG+  DT E  L   F +YG+I  + ++ DR++ + RGFGFVTF++  D  D ++
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD-HDPVDKIVL 159

Query: 286 MNGKSVDGRQIRVDQA 333
               +++G    V +A
Sbjct: 160 QKYHTINGHNAEVRKA 175



>gi|6755478|ref|NP_035488.1| (NM_011358) splicing factor,
           arginine/serine-rich 2; DNA segment, Chr 11, Wayne State
           University 175, expressed; splicing factor Sc35 [Mus
           musculus]
          Length = 221

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 35/75 (46%), Positives = 52/75 (68%)
 Frame = +1

Query: 109 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 288
           L V  L++ T+  +L +VF KYG++ +V + +DR T+ SRGF FV F +  DA+DAM AM
Sbjct: 16  LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75

Query: 289 NGKSVDGRQIRVDQA 333
           +G  +DGR++RV  A
Sbjct: 76  DGAVLDGRELRVQMA 90



>gi|6754220|ref|NP_034577.1| (NM_010447) heterogeneous nuclear
           ribonucleoprotein A1 [Mus musculus]
          Length = 320

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 35/82 (42%), Positives = 54/82 (65%)
 Frame = +1

Query: 106 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 285
           KLF+GGLSF+T ++SL   F ++G +++ VV++D  T+RSRGFGFVT+  +++  DA M
Sbjct: 15  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMN 73

Query: 286 MNGKSVDGRQIRVDQAGKSSDN 351
                VDGR +   +A    D+
Sbjct: 74  ARPHKVDGRVVEPKRAVSREDS 95


 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 28/76 (36%), Positives = 45/76 (58%)
 Frame = +1

Query: 106 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 285
           K+FVGG+  DT E  L   F +YG+I  + ++ DR + + RGF FVTF++  D+ D ++
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD-HDSVDKIVI 164

Query: 286 MNGKSVDGRQIRVDQA 333
               +V+G    V +A
Sbjct: 165 QKYHTVNGHNCEVRKA 180


  Database: RefSeq (Mus Musculus/Amino Acid)
    Posted date:  Jul 1, 2003  6:07 AM
  Number of letters in database: 7,155,815
  Number of sequences in database:  15,330

Lambda     K      H
   0.318    0.135    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11859154
Number of Sequences: 15330
Number of extensions: 256388
Number of successful extensions: 940
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of query: 320
length of database: 7,155,815
effective HSP length: 47
effective length of query: 272
effective length of database: 6,435,305
effective search space: 1750402960
effective search space used: 1750402960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)