Search to RefSeq (Human) database
Query= 20030531C-000169 (20030531C-000169) 20030531C-000169
(961 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,244 sequences; 10,046,356 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4502847|ref|NP_001271.1| (NM_001280) cold inducible RNA bind... 174 8e-44
Alignment gi|5803137|ref|NP_006734.1| (NM_006743) RNA binding motif prote... 127 1e-29
Alignment gi|21361809|ref|NP_062556.2| (NM_019610) hypothetical protein 6... 109 3e-24
Alignment gi|4504451|ref|NP_002130.1| (NM_002139) RNA binding motif prote... 108 6e-24
Alignment gi|8850217|ref|NP_055284.2| (NM_014469) testes-specific heterog... 99 3e-21
Alignment gi|4826974|ref|NP_005049.1| (NM_005058) RNA binding motif prote... 97 2e-20
Alignment gi|21699056|ref|NP_659408.1| (NM_144971) hypothetical protein M... 88 1e-17
Alignment gi|4759098|ref|NP_004584.1| (NM_004593) splicing factor, argini... 86 4e-17
Alignment gi|9558733|ref|NP_037425.1| (NM_013293) transformer-2 alpha; ht... 82 4e-16
Alignment gi|14043072|ref|NP_112533.1| (NM_031243) heterogeneous nuclear ... 75 9e-14
>gi|4502847|ref|NP_001271.1| (NM_001280) cold inducible RNA binding
protein; cold inducible RNA-binding protein;
glycine-rich RNA binding protein; Cold-inducible
RNA-binding protein [Homo sapiens]
Length = 172
Score = 174 bits (441), Expect = 8e-44
Identities = 88/88 (100%), Positives = 88/88 (100%)
Frame = +1
Query: 88 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 267
MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 268 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 351
KDAMMAMNGKSVDGRQIRVDQAGKSSDN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>gi|5803137|ref|NP_006734.1| (NM_006743) RNA binding motif protein 3
[Homo sapiens]
Length = 157
Score = 127 bits (319), Expect = 1e-29
Identities = 63/86 (73%), Positives = 75/86 (86%)
Frame = +1
Query: 88 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 267
M+S+EGKLFVGGL+F+T+EQ+LE FS +G ISEVVVVKDRETQRSRGFGF+TF N + A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 268 KDAMMAMNGKSVDGRQIRVDQAGKSS 345
AM AMNG+S+DGRQIRVD AGKS+
Sbjct: 61 SVAMRAMNGESLDGRQIRVDHAGKSA 86
>gi|21361809|ref|NP_062556.2| (NM_019610) hypothetical protein 669
[Homo sapiens]
Length = 390
Score = 109 bits (272), Expect = 3e-24
Identities = 53/85 (62%), Positives = 68/85 (79%)
Frame = +1
Query: 91 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 270
A GKLF+GGL+ +TNE++LE VF KYG+I EV+++KDRET +SRGF FVTFE+ DAK
Sbjct: 4 ADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAK 63
Query: 271 DAMMAMNGKSVDGRQIRVDQAGKSS 345
DA MNGKS+DG+ I+V+QA K S
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPS 88
>gi|4504451|ref|NP_002130.1| (NM_002139) RNA binding motif protein,
X chromosome [Homo sapiens]
Length = 391
Score = 108 bits (270), Expect = 6e-24
Identities = 53/85 (62%), Positives = 68/85 (79%)
Frame = +1
Query: 91 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 270
A GKLF+GGL+ +TNE++LE VF KYG+I EV+++KDRET +SRGF FVTFE+ DAK
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 271 DAMMAMNGKSVDGRQIRVDQAGKSS 345
DA MNGKS+DG+ I+V+QA K S
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPS 88
>gi|8850217|ref|NP_055284.2| (NM_014469) testes-specific
heterogenous nuclear ribonucleoprotein G-T [Homo
sapiens]
Length = 392
Score = 99.4 bits (246), Expect = 3e-21
Identities = 49/83 (59%), Positives = 64/83 (77%)
Frame = +1
Query: 91 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 270
A GKLF+GGL+ +T+E++LE F KYG+I EV+++KDRET +SRGF FVTFE+ DAK
Sbjct: 4 ADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 271 DAMMAMNGKSVDGRQIRVDQAGK 339
A MNGKS+DG+ I+V QA K
Sbjct: 64 AAARDMNGKSLDGKAIKVAQATK 86
>gi|4826974|ref|NP_005049.1| (NM_005058) RNA binding motif protein,
Y chromosome, family 1, member A1; RNA binding motif
protein 1; RNA binding motif protein 2 [Homo sapiens]
Length = 496
Score = 97.1 bits (240), Expect = 2e-20
Identities = 49/85 (57%), Positives = 65/85 (75%)
Frame = +1
Query: 91 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 270
A GKLF+GGL+ +TNE+ L+ VF K+G ISEV+++KDR T +SRGF F+TFEN DAK
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAK 62
Query: 271 DAMMAMNGKSVDGRQIRVDQAGKSS 345
+A MNGKS+ G+ I+V+QA K S
Sbjct: 63 NAAKDMNGKSLHGKAIKVEQAKKPS 87
>gi|21699056|ref|NP_659408.1| (NM_144971) hypothetical protein
MGC26641 [Homo sapiens]
Length = 161
Score = 87.8 bits (216), Expect = 1e-17
Identities = 45/85 (52%), Positives = 61/85 (70%)
Frame = +1
Query: 91 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 270
A GK F+GGL+ + NE+ + VF+K+G ISEV+++KDR T +SRGF F TFEN DAK
Sbjct: 4 ADRPGKHFIGGLNRENNEKMFKAVFAKHGPISEVLLIKDR-TSKSRGFAFTTFENTADAK 62
Query: 271 DAMMAMNGKSVDGRQIRVDQAGKSS 345
+A M GK +DG+ I+V+QA K S
Sbjct: 63 NAAKHMIGKPLDGKAIKVEQAKKPS 87
>gi|4759098|ref|NP_004584.1| (NM_004593) splicing factor,
arginine/serine-rich 10 (transformer 2 homolog,
Drosophila); splicing factor, arginine/serine-rich
(transformer 2 Drosophila homolog) 10 [Homo sapiens]
Length = 288
Score = 85.9 bits (211), Expect = 4e-17
Identities = 42/73 (57%), Positives = 55/73 (74%)
Frame = +1
Query: 109 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 288
L V GLS T E+ L +VFSKYG I++V +V D++++RSRGF FV FEN+DDAK+A
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 289 NGKSVDGRQIRVD 327
NG +DGR+IRVD
Sbjct: 180 NGMELDGRRIRVD 192
>gi|9558733|ref|NP_037425.1| (NM_013293) transformer-2 alpha; htra-2
alpha; putative MAPK activating protein PM24 [Homo
sapiens]
Length = 282
Score = 82.4 bits (202), Expect = 4e-16
Identities = 43/73 (58%), Positives = 52/73 (70%)
Frame = +1
Query: 109 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 288
L V GLS T E+ L +VFS+YG +S V VV D+ T RSRGF FV FE IDD+K+AM
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
Query: 289 NGKSVDGRQIRVD 327
NG +DGR+IRVD
Sbjct: 181 NGMELDGRRIRVD 193
>gi|14043072|ref|NP_112533.1| (NM_031243) heterogeneous nuclear
ribonucleoprotein A2/B1 isoform B1; heterogeneous
nuclear ribonucleoprotein A2; heterogeneous nuclear
ribonucleoprotein B1; nuclear ribonucleoprotein particle
A2 protein [Homo sapiens]
Length = 353
Score = 74.7 bits (182), Expect = 9e-14
Identities = 35/76 (46%), Positives = 55/76 (72%)
Frame = +1
Query: 106 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 285
KLF+GGLSF+T E+SL + ++G++++ VV++D ++RSRGFGFVTF ++ + DA MA
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV-DAAMA 80
Query: 286 MNGKSVDGRQIRVDQA 333
S+DGR + +A
Sbjct: 81 ARPHSIDGRVVEPKRA 96
Score = 61.6 bits (148), Expect = 8e-10
Identities = 29/76 (38%), Positives = 46/76 (60%)
Frame = +1
Query: 106 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 285
KLFVGG+ DT E L F +YG+I + ++ DR++ + RGFGFVTF++ D D ++
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD-HDPVDKIVL 171
Query: 286 MNGKSVDGRQIRVDQA 333
+++G V +A
Sbjct: 172 QKYHTINGHNAEVRKA 187
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 10,046,356
Number of sequences in database: 19,244
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16741638
Number of Sequences: 19244
Number of extensions: 366831
Number of successful extensions: 1466
Number of sequences better than 10.0: 172
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of query: 320
length of database: 10,046,356
effective HSP length: 47
effective length of query: 272
effective length of database: 9,141,888
effective search space: 2486593536
effective search space used: 2486593536
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search to RefSeq (Mouse) database
Query= 20030531C-000169 (20030531C-000169) 20030531C-000169
(961 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
15,330 sequences; 7,155,815 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|6680946|ref|NP_031731.1| (NM_007705) cold inducible RNA bind... 173 1e-43
Alignment gi|7949121|ref|NP_058089.1| (NM_016809) RNA binding motif prote... 130 7e-31
Alignment gi|6755296|ref|NP_035382.1| (NM_011252) RNA binding motif prote... 108 4e-24
Alignment gi|6677685|ref|NP_033059.1| (NM_009033) RNA binding motif prote... 105 3e-23
Alignment gi|6755298|ref|NP_035383.1| (NM_011253) RNA binding motif prote... 90 2e-18
Alignment gi|6677975|ref|NP_033212.1| (NM_009186) silica-induced gene 41 ... 86 3e-17
Alignment gi|31559916|ref|NP_666242.2| (NM_146130) hypothetical protein M... 75 4e-14
Alignment gi|7949053|ref|NP_058086.1| (NM_016806) heterogeneous nuclear r... 75 6e-14
Alignment gi|6755478|ref|NP_035488.1| (NM_011358) splicing factor, argini... 74 1e-13
Alignment gi|6754220|ref|NP_034577.1| (NM_010447) heterogeneous nuclear r... 73 2e-13
>gi|6680946|ref|NP_031731.1| (NM_007705) cold inducible RNA binding
protein; cold inducible RNA-binding protein [Mus
musculus]
Length = 172
Score = 173 bits (438), Expect = 1e-43
Identities = 87/88 (98%), Positives = 88/88 (99%)
Frame = +1
Query: 88 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 267
MASDEGKLFVGGLSFDTNEQ+LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 268 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 351
KDAMMAMNGKSVDGRQIRVDQAGKSSDN
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88
>gi|7949121|ref|NP_058089.1| (NM_016809) RNA binding motif protein 3
[Mus musculus]
Length = 153
Score = 130 bits (328), Expect = 7e-31
Identities = 64/86 (74%), Positives = 76/86 (87%)
Frame = +1
Query: 88 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 267
M+S+EGKLFVGGL+F+T+EQ+LE FS +G ISEVVVVKDRETQRSRGFGF+TF N + A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 268 KDAMMAMNGKSVDGRQIRVDQAGKSS 345
DAM AMNG+S+DGRQIRVD AGKS+
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHAGKSA 86
>gi|6755296|ref|NP_035382.1| (NM_011252) RNA binding motif protein,
X chromosome [Mus musculus]
Length = 391
Score = 108 bits (270), Expect = 4e-24
Identities = 53/85 (62%), Positives = 68/85 (79%)
Frame = +1
Query: 91 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 270
A GKLF+GGL+ +TNE++LE VF KYG+I EV+++KDRET +SRGF FVTFE+ DAK
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 271 DAMMAMNGKSVDGRQIRVDQAGKSS 345
DA MNGKS+DG+ I+V+QA K S
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPS 88
>gi|6677685|ref|NP_033059.1| (NM_009033) RNA binding motif protein,
X chromosome retrogene; hnRNP G [Mus musculus]
Length = 388
Score = 105 bits (262), Expect = 3e-23
Identities = 50/83 (60%), Positives = 66/83 (79%)
Frame = +1
Query: 91 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 270
A GKLF+GGL+ +TNE++LE VF KYG+I E++++KDRET +SRGF FVT E+ DAK
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAK 63
Query: 271 DAMMAMNGKSVDGRQIRVDQAGK 339
DA MNGKS+DG+ I+V+QA K
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATK 86
>gi|6755298|ref|NP_035383.1| (NM_011253) RNA binding motif protein,
Y chromosome, family 1, member A1 [Mus musculus]
Length = 380
Score = 89.7 bits (221), Expect = 2e-18
Identities = 36/81 (44%), Positives = 64/81 (78%)
Frame = +1
Query: 103 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 282
GK+F+GGL+ T +++L+++F ++G ++ V++++DRET++SRGF F+TF + DAK+A+
Sbjct: 8 GKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVK 67
Query: 283 AMNGKSVDGRQIRVDQAGKSS 345
MNG +DG++I+V QA + S
Sbjct: 68 EMNGVILDGKRIKVKQARRPS 88
>gi|6677975|ref|NP_033212.1| (NM_009186) silica-induced gene 41 [Mus
musculus]
Length = 288
Score = 85.9 bits (211), Expect = 3e-17
Identities = 42/73 (57%), Positives = 55/73 (74%)
Frame = +1
Query: 109 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 288
L V GLS T E+ L +VFSKYG I++V +V D++++RSRGF FV FEN+DDAK+A
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 289 NGKSVDGRQIRVD 327
NG +DGR+IRVD
Sbjct: 180 NGMELDGRRIRVD 192
>gi|31559916|ref|NP_666242.2| (NM_146130) hypothetical protein
MGC37309 [Mus musculus]
Length = 379
Score = 75.5 bits (184), Expect = 4e-14
Identities = 36/82 (43%), Positives = 55/82 (66%)
Frame = +1
Query: 106 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 285
KLF+GGLSF+T + SL + F K+G +++ VV++D +T+RSRGFGFVT+ +++ DA M
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV-DAAMC 94
Query: 286 MNGKSVDGRQIRVDQAGKSSDN 351
VDGR + +A D+
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDS 116
Score = 62.0 bits (149), Expect = 4e-10
Identities = 29/76 (38%), Positives = 47/76 (61%)
Frame = +1
Query: 106 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 285
K+FVGG+ DT E +L F KYG+I + V++DR++ + RGF FVTF++ D D ++
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD-HDTVDKIVV 185
Query: 286 MNGKSVDGRQIRVDQA 333
+++G V +A
Sbjct: 186 QKYHTINGHNCEVKKA 201
>gi|7949053|ref|NP_058086.1| (NM_016806) heterogeneous nuclear
ribonucleoprotein A2; heterogenous nuclear
ribonucleoprotein A2/B1 [Mus musculus]
Length = 341
Score = 74.7 bits (182), Expect = 6e-14
Identities = 35/76 (46%), Positives = 55/76 (72%)
Frame = +1
Query: 106 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 285
KLF+GGLSF+T E+SL + ++G++++ VV++D ++RSRGFGFVTF ++ + DA MA
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV-DAAMA 68
Query: 286 MNGKSVDGRQIRVDQA 333
S+DGR + +A
Sbjct: 69 ARPHSIDGRVVEPKRA 84
Score = 61.6 bits (148), Expect = 5e-10
Identities = 29/76 (38%), Positives = 46/76 (60%)
Frame = +1
Query: 106 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 285
KLFVGG+ DT E L F +YG+I + ++ DR++ + RGFGFVTF++ D D ++
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD-HDPVDKIVL 159
Query: 286 MNGKSVDGRQIRVDQA 333
+++G V +A
Sbjct: 160 QKYHTINGHNAEVRKA 175
>gi|6755478|ref|NP_035488.1| (NM_011358) splicing factor,
arginine/serine-rich 2; DNA segment, Chr 11, Wayne State
University 175, expressed; splicing factor Sc35 [Mus
musculus]
Length = 221
Score = 73.6 bits (179), Expect = 1e-13
Identities = 35/75 (46%), Positives = 52/75 (68%)
Frame = +1
Query: 109 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 288
L V L++ T+ +L +VF KYG++ +V + +DR T+ SRGF FV F + DA+DAM AM
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 289 NGKSVDGRQIRVDQA 333
+G +DGR++RV A
Sbjct: 76 DGAVLDGRELRVQMA 90
>gi|6754220|ref|NP_034577.1| (NM_010447) heterogeneous nuclear
ribonucleoprotein A1 [Mus musculus]
Length = 320
Score = 73.2 bits (178), Expect = 2e-13
Identities = 35/82 (42%), Positives = 54/82 (65%)
Frame = +1
Query: 106 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 285
KLF+GGLSF+T ++SL F ++G +++ VV++D T+RSRGFGFVT+ +++ DA M
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMN 73
Query: 286 MNGKSVDGRQIRVDQAGKSSDN 351
VDGR + +A D+
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDS 95
Score = 57.0 bits (136), Expect = 1e-08
Identities = 28/76 (36%), Positives = 45/76 (58%)
Frame = +1
Query: 106 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 285
K+FVGG+ DT E L F +YG+I + ++ DR + + RGF FVTF++ D+ D ++
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD-HDSVDKIVI 164
Query: 286 MNGKSVDGRQIRVDQA 333
+V+G V +A
Sbjct: 165 QKYHTVNGHNCEVRKA 180
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 7,155,815
Number of sequences in database: 15,330
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11859154
Number of Sequences: 15330
Number of extensions: 256388
Number of successful extensions: 940
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of query: 320
length of database: 7,155,815
effective HSP length: 47
effective length of query: 272
effective length of database: 6,435,305
effective search space: 1750402960
effective search space used: 1750402960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)