Search to RefSeq (Human) database
Query= 20030531C-000394 (20030531C-000394) 20030531C-000394
(1233 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,244 sequences; 10,046,356 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|7705688|ref|NP_056991.1| (NM_015907) leucine aminopeptidase ... 687 0.0
Alignment gi|20070333|ref|NP_078939.2| (NM_024663) aminopeptidase-like 1 ... 129 5e-30
Alignment gi|20127408|ref|NP_000173.2| (NM_000182) hydroxyacyl dehydrogen... 33 0.52
Alignment gi|7661842|ref|NP_056199.1| (NM_015384) IDN3 protein isoform B ... 32 1.2
Alignment gi|19718749|ref|NP_597677.1| (NM_133433) IDN3 protein isoform A... 32 1.2
Alignment gi|21361734|ref|NP_060461.3| (NM_017991) hypothetical protein F... 31 2.0
Alignment gi|4758506|ref|NP_004812.1| (NM_004821) basic helix-loop-helix ... 31 2.0
Alignment gi|4503181|ref|NP_003919.1| (NM_003928) CAAX box 1 [Homo sapiens] 31 2.0
Alignment gi|14790170|ref|NP_116563.1| (NM_032945) tumor necrosis factor ... 30 2.6
Alignment gi|4507585|ref|NP_003814.1| (NM_003823) tumor necrosis factor r... 30 2.6
>gi|7705688|ref|NP_056991.1| (NM_015907) leucine aminopeptidase [Homo
sapiens]
Length = 519
Score = 687 bits (1773), Expect = 0.0
Identities = 340/383 (88%), Positives = 362/383 (93%)
Frame = +2
Query: 83 ANMTKGLVLGIYSKEKEDDAPQFTSAGENFDKLVSGKLREILNISGPPLKAGKTRTFYGL 262
A+MTKGLVLGIYSKEKEDD PQFTSAGENFDKL++GKLRE LNISGPPLKAGKTRTFYGL
Sbjct: 30 ADMTKGLVLGIYSKEKEDDVPQFTSAGENFDKLLAGKLRETLNISGPPLKAGKTRTFYGL 89
Query: 263 HEDFSSXXXXXXXXXXXXXDDQENWHEGKENIRAAVAAGCRQIQDLEIPSVEVDPCGDAQ 442
H+DF S D+QENWHEGKENIRAAVAAGCRQIQDLE+ SVEVDPCGDAQ
Sbjct: 90 HQDFPSVVLVGLGKKAAGIDEQENWHEGKENIRAAVAAGCRQIQDLELSSVEVDPCGDAQ 149
Query: 443 AAAEGAVLGLYEYDELKQKKKVVVSAKLHGSGDQEAWQRGVLFASGQNLARHLMETPANE 622
AAAEGAVLGLYEYD+LKQKKK+ VSAKL+GSGDQEAWQ+GVLFASGQNLAR LMETPANE
Sbjct: 150 AAAEGAVLGLYEYDDLKQKKKMAVSAKLYGSGDQEAWQKGVLFASGQNLARQLMETPANE 209
Query: 623 MTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGS 802
MTPTRFAE+IEKNLKSASSKT+VHIRPKSWIEEQ MGSFLSVAKGS+EPPVFLEIHYKGS
Sbjct: 210 MTPTRFAEIIEKNLKSASSKTEVHIRPKSWIEEQAMGSFLSVAKGSDEPPVFLEIHYKGS 269
Query: 803 PDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICSTIVSAAKLDLPINLV 982
P+A++PPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS IVSAAKL+LPIN++
Sbjct: 270 PNANEPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICSAIVSAAKLNLPINII 329
Query: 983 GLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCYAHTFNPKVIINA 1162
GLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCYAHTFNPKVI+NA
Sbjct: 330 GLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCYAHTFNPKVILNA 389
Query: 1163 ATLTGAMDIALGSGATGVFTHSS 1231
ATLTGAMD+ALGSGATGVFT+SS
Sbjct: 390 ATLTGAMDVALGSGATGVFTNSS 412
>gi|20070333|ref|NP_078939.2| (NM_024663) aminopeptidase-like 1 [Homo
sapiens]
Length = 411
Score = 129 bits (323), Expect = 5e-30
Identities = 79/219 (36%), Positives = 115/219 (52%), Gaps = 1/219 (0%)
Frame = +2
Query: 578 GQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKG 757
G LA +++TP NEM F E I K K + IR + ++ + G V K
Sbjct: 65 GVRLAARIVDTPCNEMNTDTFLEEINKVGKELGIIPTI-IRDEE-LKTRGFGGIYGVGKA 122
Query: 758 SEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS 937
+ PP + + +PD + + +VGKGI +D+GG+SIK M M+ D GGAA +
Sbjct: 123 ALHPPALAVLSH--TPDGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLG 180
Query: 938 TIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADA 1117
+A K NL + L EN A +P D+ +GKT++++NTDAEGRL+LAD
Sbjct: 181 AFRAAIKQGFKDNLHAVFCLAENSVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADG 240
Query: 1118 LCYA-HTFNPKVIINAATLTGAMDIALGSGATGVFTHSS 1231
+ YA +I++ ATLTGA IA G V T+S+
Sbjct: 241 VSYACKDLGADIILDMATLTGAQGIATGKYHAAVLTNSA 279
>gi|20127408|ref|NP_000173.2| (NM_000182) hydroxyacyl dehydrogenase,
subunit A; trifunctional protein, alpha subunit;
mitochondrial trifunctional protein, alpha subunit;
long-chain hydroxyacyl-CoA dehydrogenase [Homo sapiens]
Length = 763
Score = 32.7 bits (73), Expect = 0.52
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = -3
Query: 1186 IHGTCQGGGIDDDLWVKSVRVAERVGQDESALGVGVVHLDGLPVLGSND-IPRLVGLPAG 1010
I+G+C GGG++ + + R+A + ++ LG V L LP G +P++VG+PA
Sbjct: 141 INGSCLGGGLEVAISCQ-YRIATK--DRKTVLGTPEVLLGALPGAGGTQRLPKMVGVPAA 197
Query: 1009 HVFTKRGQTDEVDGQVELG 953
G++ D ++G
Sbjct: 198 LDMMLTGRSIRADRAKKMG 216
>gi|7661842|ref|NP_056199.1| (NM_015384) IDN3 protein isoform B [Homo
sapiens]
Length = 2158
Score = 31.6 bits (70), Expect = 1.2
Identities = 14/39 (35%), Positives = 22/39 (55%)
Frame = +1
Query: 1003 KHAQREGQQAWGCR*SQEREDHPGGQHRRRGQTHPGRRA 1119
K +++ +AW +ER+ G HRR G +H GRR+
Sbjct: 566 KRHKKDDDKAWEY---EERDRRSSGDHRRSGHSHEGRRS 601
>gi|19718749|ref|NP_597677.1| (NM_133433) IDN3 protein isoform A [Homo
sapiens]
Length = 2265
Score = 31.6 bits (70), Expect = 1.2
Identities = 14/39 (35%), Positives = 22/39 (55%)
Frame = +1
Query: 1003 KHAQREGQQAWGCR*SQEREDHPGGQHRRRGQTHPGRRA 1119
K +++ +AW +ER+ G HRR G +H GRR+
Sbjct: 566 KRHKKDDDKAWEY---EERDRRSSGDHRRSGHSHEGRRS 601
>gi|21361734|ref|NP_060461.3| (NM_017991) hypothetical protein
FLJ10081 [Homo sapiens]
Length = 791
Score = 30.8 bits (68), Expect = 2.0
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +3
Query: 1023 PTSLGMSLEPRTGRPSRWTTPTPRADSSWPTRSATRTLLTQRSSSMPP 1166
PT++ ++L G+PSR TT +P + P+ ++ +L S +PP
Sbjct: 745 PTTITLTLR---GQPSRITTLSPMGSGAAPSEESSSQVLPSSSQRLPP 789
>gi|4758506|ref|NP_004812.1| (NM_004821) basic helix-loop-helix
transcription factor HAND1 [Homo sapiens]
Length = 215
Score = 30.8 bits (68), Expect = 2.0
Identities = 17/55 (30%), Positives = 22/55 (39%)
Frame = +1
Query: 913 GRSCHHLFHHRVCCQARPAHQPRRFGPSL*KHAQREGQQAWGCR*SQEREDHPGG 1077
G HH HH H+P FGP+ H +R Q+W + D P G
Sbjct: 5 GSYAHHHHHHHPHPAHPMLHEPFLFGPASRCHQERPYFQSWLLSPADAAPDFPAG 59
>gi|4503181|ref|NP_003919.1| (NM_003928) CAAX box 1 [Homo sapiens]
Length = 209
Score = 30.8 bits (68), Expect = 2.0
Identities = 14/31 (45%), Positives = 18/31 (57%)
Frame = +1
Query: 508 GRVGQAPWKWGSGGLAEGRPLCFWAEPGTPP 600
G +G+ G G EG PLC+W PG+PP
Sbjct: 6 GLLGRETLGPGGGCSGEG-PLCYWPPPGSPP 35
>gi|14790170|ref|NP_116563.1| (NM_032945) tumor necrosis factor
receptor superfamily, member 6b; decoy receptor 3 [Homo
sapiens]
Length = 300
Score = 30.4 bits (67), Expect = 2.6
Identities = 26/76 (34%), Positives = 35/76 (45%), Gaps = 6/76 (7%)
Frame = +1
Query: 742 ECGQRVRRASSLPGNSLQRQPRRK*PTP-GVCREGNYL*QWRHLYQGVCEH-----GPHE 903
E G+R+ A PG +QR RR PT G C +Y W +L + C + G E
Sbjct: 42 ETGERLVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLER--CRYCNVLCGERE 99
Query: 904 GGHGRSCHHLFHHRVC 951
R+C H H+R C
Sbjct: 100 -EEARAC-HATHNRAC 113
>gi|4507585|ref|NP_003814.1| (NM_003823) tumor necrosis factor
receptor superfamily, member 6b; decoy receptor 3 [Homo
sapiens]
Length = 300
Score = 30.4 bits (67), Expect = 2.6
Identities = 26/76 (34%), Positives = 35/76 (45%), Gaps = 6/76 (7%)
Frame = +1
Query: 742 ECGQRVRRASSLPGNSLQRQPRRK*PTP-GVCREGNYL*QWRHLYQGVCEH-----GPHE 903
E G+R+ A PG +QR RR PT G C +Y W +L + C + G E
Sbjct: 42 ETGERLVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLER--CRYCNVLCGERE 99
Query: 904 GGHGRSCHHLFHHRVC 951
R+C H H+R C
Sbjct: 100 -EEARAC-HATHNRAC 113
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 10,046,356
Number of sequences in database: 19,244
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28709703
Number of Sequences: 19244
Number of extensions: 809997
Number of successful extensions: 2853
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1890
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 2402
length of query: 411
length of database: 10,046,356
effective HSP length: 47
effective length of query: 363
effective length of database: 9,141,888
effective search space: 3318505344
effective search space used: 3318505344
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search to RefSeq (Mouse) database
Query= 20030531C-000394 (20030531C-000394) 20030531C-000394
(1233 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
15,330 sequences; 7,155,815 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|31981147|ref|NP_077754.2| (NM_024434) leucine aminopeptidase... 689 0.0
Alignment gi|8567392|ref|NP_059490.1| (NM_017462) polymerase (DNA directe... 32 0.62
Alignment gi|6680165|ref|NP_032239.1| (NM_008213) heart and neural crest ... 31 1.4
Alignment gi|27369930|ref|NP_766240.1| (NM_172652) RIKEN cDNA 4632411B12 ... 30 1.8
Alignment gi|21311971|ref|NP_083003.1| (NM_028727) RIKEN cDNA 4632412I24 ... 30 2.4
Alignment gi|27370098|ref|NP_766332.1| (NM_172744) hypothetical protein 4... 30 3.1
Alignment gi|22122553|ref|NP_666174.1| (NM_146062) hypothetical protein 1... 29 4.0
Alignment gi|27369682|ref|NP_766088.1| (NM_172500) RIKEN cDNA 4831426I19 ... 29 4.0
Alignment gi|12963811|ref|NP_076232.1| (NM_023743) Clast4 protein; DNA se... 29 5.3
Alignment gi|6680822|ref|NP_031605.1| (NM_007579) calcium channel, voltag... 28 6.9
>gi|31981147|ref|NP_077754.2| (NM_024434) leucine aminopeptidase 3;
leucine aminopeptidase [Mus musculus]
Length = 519
Score = 689 bits (1778), Expect = 0.0
Identities = 341/394 (86%), Positives = 365/394 (92%)
Frame = +2
Query: 50 VRRFWGPGPDAANMTKGLVLGIYSKEKEDDAPQFTSAGENFDKLVSGKLREILNISGPPL 229
VR W G A+MTKGLVLGIY+K+K+DD PQFTSAGE+F+KLVSGKLRE+LNISGPPL
Sbjct: 19 VRGLWDRGLSTADMTKGLVLGIYAKDKDDDLPQFTSAGESFNKLVSGKLREMLNISGPPL 78
Query: 230 KAGKTRTFYGLHEDFSSXXXXXXXXXXXXXDDQENWHEGKENIRAAVAAGCRQIQDLEIP 409
KAGKTRTFYGLH+DF S DDQENWHEGKENIR AVAAGCRQ+QDLE+P
Sbjct: 79 KAGKTRTFYGLHQDFPSVVVVGLGKRSAGVDDQENWHEGKENIRDAVAAGCRQVQDLELP 138
Query: 410 SVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGSGDQEAWQRGVLFASGQNL 589
SVEVDPCGDAQAAAEGAVLGLYEYD+LKQKKKV VSAKLHGSGD EAW++GVLFASGQNL
Sbjct: 139 SVEVDPCGDAQAAAEGAVLGLYEYDDLKQKKKVAVSAKLHGSGDLEAWEKGVLFASGQNL 198
Query: 590 ARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKGSEEP 769
ARHLME+PANEMTPTRFAE+IEKNLKSASSKT VHIRPKSWIEEQEMGSFLSVAKGSEEP
Sbjct: 199 ARHLMESPANEMTPTRFAEIIEKNLKSASSKTKVHIRPKSWIEEQEMGSFLSVAKGSEEP 258
Query: 770 PVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICSTIVS 949
PVFLEIHY GSP+A++ PLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS IVS
Sbjct: 259 PVFLEIHYMGSPNATEAPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICSAIVS 318
Query: 950 AAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCYA 1129
AAKL+LPIN++GLAPLCENMPSGKANKPGDVVRA+NGKTIQVDNTDAEGRLILADALCYA
Sbjct: 319 AAKLNLPINIIGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYA 378
Query: 1130 HTFNPKVIINAATLTGAMDIALGSGATGVFTHSS 1231
HTFNPKVIINAATLTGAMD+ALGSGATGVFT+SS
Sbjct: 379 HTFNPKVIINAATLTGAMDVALGSGATGVFTNSS 412
>gi|8567392|ref|NP_059490.1| (NM_017462) polymerase (DNA directed),
gamma; polymerase, gamma; Pol gamma; polymerase gamma;
mitochondrial DNA polymerase gamma; mitochondrial DNA
polymerase-gamma; mitochondrial polymerase gamma [Mus
musculus]
Length = 1238
Score = 32.0 bits (71), Expect = 0.62
Identities = 26/87 (29%), Positives = 35/87 (39%)
Frame = -3
Query: 865 AATVKGNSLPDKHQGWVTCVWAAFVVNFQEDWRLFGPFGHTQE*SHFLFLNPRLGSDVDV 686
AA++ LP + + W WA E W +GP G + + + L DV+V
Sbjct: 137 AASLLEAQLPPEPKSWA---WA-------EGWNRYGPEGEAEPVA--IPEERALVFDVEV 184
Query: 685 CFTAGTFEILLNNFSKSGWRHLIGRRL 605
C GT L S S W RRL
Sbjct: 185 CLAEGTCPTLAVAISPSAWYSWCSRRL 211
>gi|6680165|ref|NP_032239.1| (NM_008213) heart and neural crest
derivatives expressed transcript 1 [Mus musculus]
Length = 216
Score = 30.8 bits (68), Expect = 1.4
Identities = 17/55 (30%), Positives = 22/55 (39%)
Frame = +1
Query: 913 GRSCHHLFHHRVCCQARPAHQPRRFGPSL*KHAQREGQQAWGCR*SQEREDHPGG 1077
G HH HH H+P FGP+ H +R Q+W + D P G
Sbjct: 5 GSYAHHHHHHHSHPPHPMLHEPFLFGPASRCHQERPYFQSWLLSPADAAPDFPAG 59
>gi|27369930|ref|NP_766240.1| (NM_172652) RIKEN cDNA 4632411B12 [Mus
musculus]
Length = 877
Score = 30.4 bits (67), Expect = 1.8
Identities = 15/48 (31%), Positives = 25/48 (51%)
Frame = +3
Query: 1023 PTSLGMSLEPRTGRPSRWTTPTPRADSSWPTRSATRTLLTQRSSSMPP 1166
PT++ ++L G+PSR TT +P + P+ +L S +PP
Sbjct: 831 PTTITLTLR---GQPSRITTLSPMGSGATPSEEPNSQMLPSSSQRLPP 875
>gi|21311971|ref|NP_083003.1| (NM_028727) RIKEN cDNA 4632412I24 [Mus
musculus]
Length = 671
Score = 30.0 bits (66), Expect = 2.4
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +3
Query: 1002 KTCPAGRPTSLGMSLEPRTGRPSRWTTPTPRADSSWPTRSATRTLLTQRSSSMP 1163
+ PAG ++ L R+ RP+ + PTP + T SAT +LL R+ S P
Sbjct: 64 QVAPAGAHVAVKCKLRARS-RPAPRSPPTPSVPPAPCTASATCSLLNPRNHSTP 116
>gi|27370098|ref|NP_766332.1| (NM_172744) hypothetical protein
4732427B05 [Mus musculus]
Length = 544
Score = 29.6 bits (65), Expect = 3.1
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 92 TKGLVLGIYSKEKEDDAPQFTSAGENFDKLVSGKLREILNISGPPLKAGKTRT 250
TK +VL ++ + TS G++ +S KL +S PP AGK T
Sbjct: 426 TKAVVLSSEDTDQSESGMLDTSTGQSSSGSLSQKLLSPAEVSSPPGPAGKATT 478
>gi|22122553|ref|NP_666174.1| (NM_146062) hypothetical protein
1600022A19Rik isoform 1 [Mus musculus]
Length = 381
Score = 29.3 bits (64), Expect = 4.0
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = +1
Query: 895 PHEGGHGRSCHHLFHHRVCCQARPAHQPRRFGPSL*KHAQREGQQAWGCR*SQEREDH 1068
P EGG+ R H+ RVC + R RR GPS H+ E W R+DH
Sbjct: 58 PDEGGYSRYYSHV-DCRVCDEGRSFSHDRRSGPS---HSGDESGYRW------LRDDH 105
>gi|27369682|ref|NP_766088.1| (NM_172500) RIKEN cDNA 4831426I19 [Mus
musculus]
Length = 895
Score = 29.3 bits (64), Expect = 4.0
Identities = 18/67 (26%), Positives = 33/67 (48%)
Frame = +2
Query: 359 RAAVAAGCRQIQDLEIPSVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGSG 538
RAA+A+ ++ L+ ++ D Q+ ++ V + EY +K K + +LH +
Sbjct: 295 RAALASEEPRVDRLQTQLKKLVTFPDLQSLSDSVVATIQEYQSMKGK-----NTRLHNAT 349
Query: 539 DQEAWQR 559
E WQR
Sbjct: 350 RAELWQR 356
>gi|12963811|ref|NP_076232.1| (NM_023743) Clast4 protein; DNA segment,
Chr 11, ERATO Doi 166, expressed [Mus musculus]
Length = 983
Score = 28.9 bits (63), Expect = 5.3
Identities = 23/71 (32%), Positives = 32/71 (44%), Gaps = 2/71 (2%)
Frame = -1
Query: 1038 SPGLLAFPLGMFSQRGAKPTRLMGR--SSLAADTMVEQMVAAPPMSALMRSMFADALIEM 865
S +L LG QR A L G S A +++ Q +PPMS + R+ A A
Sbjct: 522 SKNILQELLGQPVQRPASSNLLSGLMGSLEATASLLSQRAPSPPMSQVFRTQAASADYLH 581
Query: 864 PPLSKVIPFPT 832
P + I FP+
Sbjct: 582 PRIPSPIGFPS 592
>gi|6680822|ref|NP_031605.1| (NM_007579) calcium channel,
voltage-dependent, N type, alpha 1B subunit; calcium
channel, voltage-dependent, L type, alpha 1B subunit [Mus
musculus]
Length = 2288
Score = 28.5 bits (62), Expect = 6.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 98 PSSCLQRLDRVPRNASRSAVGRRLAQQPEE 9
PS+CLQ++D P +A R+ QP +
Sbjct: 1032 PSTCLQKVDEQPEDADNQRNVTRMGSQPSD 1061
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 7,155,815
Number of sequences in database: 15,330
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20116059
Number of Sequences: 15330
Number of extensions: 551450
Number of successful extensions: 1949
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 1611
length of query: 411
length of database: 7,155,815
effective HSP length: 47
effective length of query: 363
effective length of database: 6,435,305
effective search space: 2336015715
effective search space used: 2336015715
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)