Search to RefSeq (Human) database
Query= 20030531C-000451 (20030531C-000451) 20030531C-000451
(1193 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,244 sequences; 10,046,356 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4502669|ref|NP_000723.1| (NM_000732) CD3D antigen, delta pol... 248 4e-66
Alignment gi|4557429|ref|NP_000064.1| (NM_000073) CD3G gamma precursor; T... 122 6e-28
Alignment gi|4502671|ref|NP_000724.1| (NM_000733) CD3E antigen, epsilon p... 42 6e-04
Alignment gi|19923195|ref|NP_001703.2| (NM_001712) carcinoembryonic antig... 38 0.016
Alignment gi|18491014|ref|NP_567825.1| (NM_106552) HS1-binding protein 3 ... 33 0.38
Alignment gi|15208669|ref|NP_150090.1| (NM_033221) tripartite motif prote... 32 0.85
Alignment gi|15208667|ref|NP_150089.1| (NM_033220) tripartite motif prote... 32 0.85
Alignment gi|15208665|ref|NP_150088.1| (NM_033219) tripartite motif prote... 32 0.85
Alignment gi|15208663|ref|NP_055603.2| (NM_014788) tripartite motif prote... 32 0.85
Alignment gi|16445027|ref|NP_443177.1| (NM_052945) BAFF receptor; B cell-... 32 1.1
>gi|4502669|ref|NP_000723.1| (NM_000732) CD3D antigen, delta
polypeptide (TiT3 complex) [Homo sapiens]
Length = 171
Score = 248 bits (634), Expect = 4e-66
Identities = 123/175 (70%), Positives = 148/175 (84%), Gaps = 4/175 (2%)
Frame = +3
Query: 135 MEHSRFLSGLILAAFLSRVSPYEVEMEELEDKVFVSCNTSIIWLQGTEGELLSD-KKIDL 311
MEHS FLSGL+LA LS+VSP+++ +EELED+VFV+CNTSI W++GT G LLSD ++DL
Sbjct: 1 MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL 60
Query: 312 GKRILDPRGLYKCNAP---KEQDSNSKIFLQVYYRMCQNCVELDSATLAGIIVTDIIATL 482
GKRILDPRG+Y+CN K+++S +QV+YRMCQ+CVELD AT+AGIIVTD+IATL
Sbjct: 61 GKRILDPRGIYRCNGTDIYKDKEST----VQVHYRMCQSCVELDPATVAGIIVTDVIATL 116
Query: 483 LLALGVYCFAGHEMGRFSRAADTQDLLRNDQLYQPLRDRNDGQYSRLGENWARNK 647
LLALGV+CFAGHE GR S AADTQ LLRNDQ+YQPLRDR+D QYS LG NWARNK
Sbjct: 117 LLALGVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK 171
>gi|4557429|ref|NP_000064.1| (NM_000073) CD3G gamma precursor;
T-cell surface glycoprotein CD3 gamma chain precursor;
T-cell receptor T3 gamma chain; CD3-gamma; T-cell
antigen receptor complex, gamma subunit of T3 [Homo
sapiens]
Length = 182
Score = 122 bits (305), Expect = 6e-28
Identities = 76/184 (41%), Positives = 109/184 (58%), Gaps = 15/184 (8%)
Frame = +3
Query: 135 MEHSRFLSGLILAAFL-------SRVSPYEVEMEELED--KVFVSCNT---SIIWLQGTE 278
ME + L+ LILA L S + V++ + ++ V ++C+ +I W + +
Sbjct: 1 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK 60
Query: 279 --GELLSDKKI-DLGKRILDPRGLYKCNAPKEQDSNSKIFLQVYYRMCQNCVELDSATLA 449
G L DKK +LG DPRG+Y+C + + LQVYYRMCQNC+EL++AT++
Sbjct: 61 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKP----LQVYYRMCQNCIELNAATIS 116
Query: 450 GIIVTDIIATLLLALGVYCFAGHEMGRFSRAADTQDLLRNDQLYQPLRDRNDGQYSRLGE 629
G + +I++ +LA+GVY AG + R SRA+D Q LL NDQLYQPL+DR D QYS L
Sbjct: 117 GFLFAEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQG 176
Query: 630 NWAR 641
N R
Sbjct: 177 NQLR 180
>gi|4502671|ref|NP_000724.1| (NM_000733) CD3E antigen, epsilon
polypeptide (TiT3 complex) [Homo sapiens]
Length = 207
Score = 42.4 bits (98), Expect = 6e-04
Identities = 37/150 (24%), Positives = 65/150 (42%), Gaps = 14/150 (9%)
Frame = +3
Query: 96 VTWVCLLDELCWKMEHSRFLSGLILAAFLSRVSPYEVEMEELEDKVFVSC----NTSIIW 263
V +CLL W + + + G+ +PY+V + V ++C + I+W
Sbjct: 9 VLGLCLLSVGVWGQDGNEEMGGITQ-------TPYKVSISGTT--VILTCPQYPGSEILW 59
Query: 264 LQGTE--GELLSDKKIDLGK--------RILDPRGLYKCNAPKEQDSNSKIFLQVYYRMC 413
+ G DK I + L+ G Y C + ++ +L + R+C
Sbjct: 60 QHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRARVC 119
Query: 414 QNCVELDSATLAGIIVTDIIATLLLALGVY 503
+NC+E+D ++A I++ DI T L L VY
Sbjct: 120 ENCMEMDVMSVATIVIVDICITGGLLLLVY 149
>gi|19923195|ref|NP_001703.2| (NM_001712) carcinoembryonic
antigen-related cell adhesion molecule 1 (biliary
glycoprotein) [Homo sapiens]
Length = 526
Score = 37.7 bits (86), Expect = 0.016
Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 24/158 (15%)
Frame = +3
Query: 222 EDKVFVSCNT-----SIIWLQGTEGELLSDK-KIDLGKRIL-------DPRGLYKCNA-- 356
+D V ++C+T SI W + S++ K+ G L + G Y C
Sbjct: 341 KDSVNLTCSTNDTGISIRWFFKNQSLPSSERMKLSQGNTTLSINPVKREDAGTYWCEVFN 400
Query: 357 PKEQDSNSKIFLQVYYRMCQNCVELDSATLAGIIVTDIIATLLLALGVYCFAGHEMGRFS 536
P ++ + I L V Y L +AGI++ + L+A+ + CF G+
Sbjct: 401 PISKNQSDPIMLNVNYNALPQENGLSPGAIAGIVIGVVALVALIAVALACFL--HFGKTG 458
Query: 537 RAADTQDLLRN---------DQLYQPLRDRNDGQYSRL 623
RA+D +DL + D P N+ YS L
Sbjct: 459 RASDQRDLTEHKPSVSNHTQDHSNDPPNKMNEVTYSTL 496
>gi|18491014|ref|NP_567825.1| (NM_106552) HS1-binding protein 3
isoform 2 [Homo sapiens]
Length = 302
Score = 33.1 bits (74), Expect = 0.38
Identities = 22/71 (30%), Positives = 32/71 (44%), Gaps = 1/71 (1%)
Frame = -2
Query: 1003 RKSKQQQCWYRGLEPVGVGSSNPAPRESARPKNTSGTGYGETL-PIIPSMWGREREAKKE 827
+K K+ +C +GL P G S P P RP + G + P P +WG+ R +
Sbjct: 210 KKPKKHRCEGKGLGPAG---SEP-PHPQGRPGRSLGHSTQNCMVPFSPGLWGQSRSLRAA 265
Query: 826 GHRWAGRAKAQ 794
G A+AQ
Sbjct: 266 GAALTLGARAQ 276
>gi|15208669|ref|NP_150090.1| (NM_033221) tripartite motif protein
TRIM14 isoform beta; tripartite motif protein TRIM14;
tripartite motif protein 14 [Homo sapiens]
Length = 253
Score = 32.0 bits (71), Expect = 0.85
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +3
Query: 207 EMEELEDKVFVSCNTSIIWLQG--TEGELLSDKKIDLGKRILDPRGLYKCNAPKEQDSNS 380
++E+ +K+ + +S WL+G TE LL D++ L K+ +D N+
Sbjct: 92 QIEDATEKLKANAESSKTWLKGKFTELRLLLDEEEALAKKFID--------------KNT 137
Query: 381 KIFLQVYYRMCQNCVE 428
++ LQVY +C E
Sbjct: 138 QLTLQVYREQADSCRE 153
>gi|15208667|ref|NP_150089.1| (NM_033220) tripartite motif protein
TRIM14 isoform alpha; tripartite motif protein TRIM14;
tripartite motif protein 14 [Homo sapiens]
Length = 442
Score = 32.0 bits (71), Expect = 0.85
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +3
Query: 207 EMEELEDKVFVSCNTSIIWLQG--TEGELLSDKKIDLGKRILDPRGLYKCNAPKEQDSNS 380
++E+ +K+ + +S WL+G TE LL D++ L K+ +D N+
Sbjct: 92 QIEDATEKLKANAESSKTWLKGKFTELRLLLDEEEALAKKFID--------------KNT 137
Query: 381 KIFLQVYYRMCQNCVE 428
++ LQVY +C E
Sbjct: 138 QLTLQVYREQADSCRE 153
>gi|15208665|ref|NP_150088.1| (NM_033219) tripartite motif protein
TRIM14 isoform alpha; tripartite motif protein TRIM14;
tripartite motif protein 14 [Homo sapiens]
Length = 442
Score = 32.0 bits (71), Expect = 0.85
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +3
Query: 207 EMEELEDKVFVSCNTSIIWLQG--TEGELLSDKKIDLGKRILDPRGLYKCNAPKEQDSNS 380
++E+ +K+ + +S WL+G TE LL D++ L K+ +D N+
Sbjct: 92 QIEDATEKLKANAESSKTWLKGKFTELRLLLDEEEALAKKFID--------------KNT 137
Query: 381 KIFLQVYYRMCQNCVE 428
++ LQVY +C E
Sbjct: 138 QLTLQVYREQADSCRE 153
>gi|15208663|ref|NP_055603.2| (NM_014788) tripartite motif protein
TRIM14 isoform alpha; tripartite motif protein TRIM14;
tripartite motif protein 14 [Homo sapiens]
Length = 442
Score = 32.0 bits (71), Expect = 0.85
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +3
Query: 207 EMEELEDKVFVSCNTSIIWLQG--TEGELLSDKKIDLGKRILDPRGLYKCNAPKEQDSNS 380
++E+ +K+ + +S WL+G TE LL D++ L K+ +D N+
Sbjct: 92 QIEDATEKLKANAESSKTWLKGKFTELRLLLDEEEALAKKFID--------------KNT 137
Query: 381 KIFLQVYYRMCQNCVE 428
++ LQVY +C E
Sbjct: 138 QLTLQVYREQADSCRE 153
>gi|16445027|ref|NP_443177.1| (NM_052945) BAFF receptor; B
cell-activating factor receptor [Homo sapiens]
Length = 184
Score = 31.6 bits (70), Expect = 1.1
Identities = 13/35 (37%), Positives = 21/35 (59%)
Frame = -2
Query: 961 PVGVGSSNPAPRESARPKNTSGTGYGETLPIIPSM 857
P G+S+PAPR + +P+ + G G GE +P +
Sbjct: 43 PKPAGASSPAPRTALQPQESVGAGAGEAALPLPGL 77
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 10,046,356
Number of sequences in database: 19,244
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27939810
Number of Sequences: 19244
Number of extensions: 765885
Number of successful extensions: 2723
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1808
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 2280
length of query: 397
length of database: 10,046,356
effective HSP length: 47
effective length of query: 350
effective length of database: 9,141,888
effective search space: 3199660800
effective search space used: 3199660800
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search to RefSeq (Mouse) database
Query= 20030531C-000451 (20030531C-000451) 20030531C-000451
(1193 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
15,330 sequences; 7,155,815 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|7304951|ref|NP_038515.1| (NM_013487) CD3 antigen, delta poly... 213 1e-55
Alignment gi|6753350|ref|NP_033980.1| (NM_009850) CD3 antigen, gamma poly... 117 1e-26
Alignment gi|6680886|ref|NP_031674.1| (NM_007648) CD3 antigen, epsilon po... 42 6e-04
Alignment gi|6755915|ref|NP_035792.1| (NM_011662) TYRO protein tyrosine k... 36 0.032
Alignment gi|23957686|ref|NP_705809.1| (NM_153581) glycoprotein m6a [Mus ... 29 5.1
Alignment gi|9625033|ref|NP_062521.1| (NM_019575) secretory carrier membr... 29 5.1
Alignment gi|7305601|ref|NP_038726.1| (NM_013698) TXK tyrosine kinase [Mu... 29 5.1
Alignment gi|22507337|ref|NP_683734.1| (NM_148932) nuclear pore membrane ... 29 5.1
Alignment gi|11038656|ref|NP_066302.1| (NM_021022) ATP-binding cassette, ... 28 6.6
Alignment gi|29568094|ref|NP_077207.2| (NM_024245) kinesin family member ... 28 8.7
>gi|7304951|ref|NP_038515.1| (NM_013487) CD3 antigen, delta
polypeptide [Mus musculus]
Length = 173
Score = 213 bits (542), Expect = 1e-55
Identities = 108/172 (62%), Positives = 132/172 (75%), Gaps = 1/172 (0%)
Frame = +3
Query: 135 MEHSRFLSGLILAAFLSRVSPYEVEMEELEDKVFVSCNTSIIWLQGT-EGELLSDKKIDL 311
MEHS L+ LIL A L + SP+++++ E EDKVFV+CNTS++ L GT EG +K ++L
Sbjct: 1 MEHSGILASLILIAVLPQGSPFKIQVTEYEDKVFVTCNTSVMHLDGTVEGWFAKNKTLNL 60
Query: 312 GKRILDPRGLYKCNAPKEQDSNSKIFLQVYYRMCQNCVELDSATLAGIIVTDIIATLLLA 491
GK +LDPRG+Y CN EQ + +QV+YRMCQNCVELDS T+AG+I D+IATLLLA
Sbjct: 61 GKGVLDPRGIYLCNGT-EQLAKVVSSVQVHYRMCQNCVELDSGTMAGVIFIDLIATLLLA 119
Query: 492 LGVYCFAGHEMGRFSRAADTQDLLRNDQLYQPLRDRNDGQYSRLGENWARNK 647
LGVYCFAGHE GR S AA+ Q LL+N+QLYQPLRDR D QYSRLG NW RNK
Sbjct: 120 LGVYCFAGHETGRPSGAAEVQALLKNEQLYQPLRDREDTQYSRLGGNWPRNK 171
>gi|6753350|ref|NP_033980.1| (NM_009850) CD3 antigen, gamma
polypeptide [Mus musculus]
Length = 182
Score = 117 bits (292), Expect = 1e-26
Identities = 73/188 (38%), Positives = 104/188 (54%), Gaps = 17/188 (9%)
Frame = +3
Query: 135 MEHSRFLSGLILAAFLSRVSP---------YEVEMEELEDKVFVSC---NTSIIWLQGTE 278
ME + L+GL L L + + +V+ + V ++C + +I WL+ +
Sbjct: 1 MEQRKGLAGLFLVISLLQGTVAQTNKAKNLVQVDGSRGDGSVLLTCGLTDKTIKWLK--D 58
Query: 279 GELLSDKKI-----DLGKRILDPRGLYKCNAPKEQDSNSKIFLQVYYRMCQNCVELDSAT 443
G ++S +LG DPRG Y+C KE + LQVYYRMC+NC+EL+ T
Sbjct: 59 GSIISPLNATKNTWNLGNNAKDPRGTYQCQGAKETSNP----LQVYYRMCENCIELNIGT 114
Query: 444 LAGIIVTDIIATLLLALGVYCFAGHEMGRFSRAADTQDLLRNDQLYQPLRDRNDGQYSRL 623
++G I ++I+ LALGVY AG + R SRA+D Q LL+N+QLYQPL+DR QYS L
Sbjct: 115 ISGFIFAEVISIFFLALGVYLIAGQDGVRQSRASDKQTLLQNEQLYQPLKDREYDQYSHL 174
Query: 624 GENWARNK 647
N R K
Sbjct: 175 QGNQLRKK 182
>gi|6680886|ref|NP_031674.1| (NM_007648) CD3 antigen, epsilon
polypeptide [Mus musculus]
Length = 189
Score = 42.0 bits (97), Expect = 6e-04
Identities = 22/60 (36%), Positives = 33/60 (54%)
Frame = +3
Query: 324 LDPRGLYKCNAPKEQDSNSKIFLQVYYRMCQNCVELDSATLAGIIVTDIIATLLLALGVY 503
++ G Y C P SN +L + R+C+ CVE+D +A II+ DI TL L + +Y
Sbjct: 75 VEDSGYYVCYTPA---SNKNTYLYLKARVCEYCVEVDLTAVAIIIIVDICITLGLLMVIY 131
>gi|6755915|ref|NP_035792.1| (NM_011662) TYRO protein tyrosine
kinase binding protein; killer cell activating receptor
associated protein [Mus musculus]
Length = 114
Score = 36.2 bits (82), Expect = 0.032
Identities = 23/72 (31%), Positives = 36/72 (49%), Gaps = 3/72 (4%)
Frame = +3
Query: 417 NCVELDSATLAGIIVTDIIATLLLALGVYCFAGHEMGRFSRAAD---TQDLLRNDQLYQP 587
+C + LAGI++ D++ TLL+AL VY G + R A+ Q + + YQ
Sbjct: 36 DCSSVSPGVLAGIVLGDLVLTLLIALAVYSL-GRLVSRGQGTAEGTRKQHIAETESPYQE 94
Query: 588 LRDRNDGQYSRL 623
L+ + YS L
Sbjct: 95 LQGQRPEVYSDL 106
>gi|23957686|ref|NP_705809.1| (NM_153581) glycoprotein m6a [Mus
musculus]
Length = 278
Score = 28.9 bits (63), Expect = 5.1
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 414 QNCVELDSATLAGIIVTDIIATLLLALGV--YCFAGHE 521
+ C E L GI +IAT+LL GV +C GHE
Sbjct: 12 KGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHE 49
>gi|9625033|ref|NP_062521.1| (NM_019575) secretory carrier membrane
protein 4 [Mus musculus]
Length = 230
Score = 28.9 bits (63), Expect = 5.1
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +2
Query: 683 YRLNFSPCSAEKDVLLQLAGAWILKDPG*GMGVVLTWLSLCPPCPPVSFF 832
YRL C+ L+ WI G G+ L WL L PC V +F
Sbjct: 41 YRLWMFYCATLGVNLVACLAWWIAGGAGANFGLALLWLVLFTPCSYVCWF 90
>gi|7305601|ref|NP_038726.1| (NM_013698) TXK tyrosine kinase [Mus
musculus]
Length = 527
Score = 28.9 bits (63), Expect = 5.1
Identities = 20/59 (33%), Positives = 26/59 (43%), Gaps = 8/59 (13%)
Frame = -1
Query: 827 RTQVGREGKGSAKSGPLPCLTQDPSKSR--------HLPTEGGHLSQLSKERS*VGNRC 675
+TQ R G +K PLP L Q+P R LP E G+L+ E + RC
Sbjct: 57 KTQSNRGGVQPSKRKPLPPLPQEPPDERIQVKALYDFLPREPGNLALKRAEEYLILERC 115
>gi|22507337|ref|NP_683734.1| (NM_148932) nuclear pore membrane
protein 121 [Mus musculus]
Length = 1199
Score = 28.9 bits (63), Expect = 5.1
Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 6/130 (4%)
Frame = -3
Query: 849 EKGKRRKKDTGGQGGQRLSQVRTTPMPHPGSFKIQAPAN*RRTSFSAEQGEKLSR*QMHL 670
++ KRR+ D+GG G + +P + + P + +R+ S + L++
Sbjct: 310 QENKRRRHDSGGSGHSAFEPLVANGVP---AAFVPKPGSLKRSLASQSSDDHLNKRSRTS 366
Query: 669 EATSHRFTCSE--PSSHQDDCTDHHSDLEGAD----RAGHSSTNLECQQP*RTFPSRVQQ 508
+S C+ PSS ++ T +S G R+G +S+ F S
Sbjct: 367 SVSSLASACTGGIPSSSRNAITSSYSSTRGISQLWKRSGPTSS---------PFSSPASS 417
Query: 507 SSRLPKRGAE 478
S+ P+R A+
Sbjct: 418 RSQTPERPAK 427
>gi|11038656|ref|NP_066302.1| (NM_021022) ATP-binding cassette,
sub-family B, member 11; bile salt export pump; sister
of P-glycoprotein [Mus musculus]
Length = 1321
Score = 28.5 bits (62), Expect = 6.6
Identities = 19/96 (19%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Frame = +3
Query: 75 FTQAASSVTWVCLLDELCWKMEHSRFLSGLILA-AFLSRVS-PYEVEMEELEDKVFVSCN 248
F ++S W+ + +C + H G+I+ L+ + Y++E +EL V N
Sbjct: 51 FRFSSSKDNWLMFMGSVC-ALLHGMAQPGMIIVFGILTDIFVEYDIERQELSIPGKVCMN 109
Query: 249 TSIIWLQGTEGELLSDKK----IDLGKRILDPRGLY 344
+I+W+ + + +++ +D+ ++ G+Y
Sbjct: 110 NTIVWINSSFNQNMTNGTSCGLVDINSEVIKFSGIY 145
>gi|29568094|ref|NP_077207.2| (NM_024245) kinesin family member 23;
kinesin-like 5 (mitotic kinesin-like protein 1) [Mus
musculus]
Length = 953
Score = 28.1 bits (61), Expect = 8.7
Identities = 20/86 (23%), Positives = 31/86 (35%)
Frame = -2
Query: 1015 SAVVRKSKQQQCWYRGLEPVGVGSSNPAPRESARPKNTSGTGYGETLPIIPSMWGREREA 836
+ +V ++ CW G E V SS E +NT +P+ R R +
Sbjct: 759 TCIVSDRRRGMCWTEGREMVPTFSSEIGVEEDHCRRNT-------PIPV------RHRRS 805
Query: 835 KKEGHRWAGRAKAQPSQDHSHASPRI 758
+ G RW A Q + P +
Sbjct: 806 RSAGSRWVDHKPASNVQTETVMQPHV 831
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 7,155,815
Number of sequences in database: 15,330
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19728316
Number of Sequences: 15330
Number of extensions: 532791
Number of successful extensions: 1980
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 1630
length of query: 397
length of database: 7,155,815
effective HSP length: 47
effective length of query: 350
effective length of database: 6,435,305
effective search space: 2252356750
effective search space used: 2252356750
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)