Search to RefSeq (Human) database
Query= 20030531C-000510 (20030531C-000510) 20030531C-000510
(1039 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,244 sequences; 10,046,356 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4557837|ref|NP_000293.1| (NM_000302) procollagen-lysine 5-di... 536 e-152
Alignment gi|4505889|ref|NP_000926.1| (NM_000935) procollagen-lysine, 2-o... 337 1e-92
Alignment gi|4505891|ref|NP_001075.1| (NM_001084) procollagen-lysine, 2-o... 327 1e-89
Alignment gi|17986277|ref|NP_001837.1| (NM_001846) alpha 2 type IV collag... 34 0.15
Alignment gi|15890086|ref|NP_203699.1| (NM_033380) alpha 5 type IV collag... 30 0.15
Alignment gi|15890088|ref|NP_203700.1| (NM_033381) alpha 5 type IV collag... 29 0.15
Alignment gi|4502955|ref|NP_000486.1| (NM_000495) alpha 5 type IV collage... 29 0.15
Alignment gi|4506431|ref|NP_002881.1| (NM_002890) RAS p21 protein activat... 33 0.25
Alignment gi|23110974|ref|NP_690056.1| (NM_152843) light ear protein isof... 31 1.2
Alignment gi|23110972|ref|NP_690055.1| (NM_152842) light ear protein isof... 31 1.2
>gi|4557837|ref|NP_000293.1| (NM_000302) procollagen-lysine
5-dioxygenase; Procollagen-lysine, 2-oxoglutarate
5-dioxygenase (lysine hydroxylase); lysine,
2-oxoglutarate 5-dioxygenase [Homo sapiens]
Length = 727
Score = 536 bits (1380), Expect = e-152
Identities = 269/299 (89%), Positives = 277/299 (91%), Gaps = 2/299 (0%)
Frame = +1
Query: 100 ETKGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWN-EKEASSGGGL 276
E KGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWN EK S+GGG
Sbjct: 17 EAKGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNVEKGTSAGGGQ 76
Query: 277 KVRLLKKALEKHAD-ENLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDR 453
KVRLLKKALEKHAD E+LVILFTDSYDV+FASGPRELLKKFRQA+SQVVFSAEELIYPDR
Sbjct: 77 KVRLLKKALEKHADKEDLVILFTDSYDVLFASGPRELLKKFRQARSQVVFSAEELIYPDR 136
Query: 454 RLEAKYPAVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERI 633
RLE KYP VSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRE+I
Sbjct: 137 RLETKYPVVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKREQI 196
Query: 634 NITLDHRCRIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNY 813
NITLDHRCRIFQNLDGALDEVVLKFEMG VRARNLAYDTLPVLIHGNGPTKLQLNYLGNY
Sbjct: 197 NITLDHRCRIFQNLDGALDEVVLKFEMGHVRARNLAYDTLPVLIHGNGPTKLQLNYLGNY 256
Query: 814 IPRFWTFETGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYPR 990
IPRFWTFETGC+VCDEGLRSLKGIGDEALPTVLVG+FIEQPTP YP+
Sbjct: 257 IPRFWTFETGCTVCDEGLRSLKGIGDEALPTVLVGVFIEQPTPFVSLFFQRLLRLHYPQ 315
>gi|4505889|ref|NP_000926.1| (NM_000935) procollagen-lysine,
2-oxoglutarate 5-dioxygenase (lysine hydroxylase) 2;
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine
hydroxylase) [Homo sapiens]
Length = 737
Score = 337 bits (863), Expect = 1e-92
Identities = 159/298 (53%), Positives = 220/298 (73%), Gaps = 3/298 (1%)
Frame = +1
Query: 106 KGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNEKEA--SSGGGLK 279
K + P D LLV+TVATKE++GF RF +SA++FNY ++ LG GE+W + S GGG K
Sbjct: 30 KPSSIPTDKLLVITVATKESDGFHRFMQSAKYFNYTVKVLGQGEEWRGGDGINSIGGGQK 89
Query: 280 VRLLKKALEKHADEN-LVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDRR 456
VRL+K+ +E +AD++ LV++FT+ +DV+FA GP E+LKKF++A +VVF+A+ +++PD+R
Sbjct: 90 VRLMKEVMEHYADQDDLVVMFTECFDVIFAGGPEEVLKKFQKANHKVVFAADGILWPDKR 149
Query: 457 LEAKYPAVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERIN 636
L KYP V GKR+L SGGFIGYAP ++++V +W QD+D DQLFYTK+++DP KRE IN
Sbjct: 150 LADKYPVVHIGKRYLNSGGFIGYAPYVNRIVQQWNLQDNDDDQLFYTKVYIDPLKREAIN 209
Query: 637 ITLDHRCRIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYI 816
ITLDH+C+IFQ L+GA+DEVVLKFE G+ RA+N Y+TLPV I+GNGPTK+ LNY GNY+
Sbjct: 210 ITLDHKCKIFQTLNGAVDEVVLKFENGKARAKNTFYETLPVAINGNGPTKILLNYFGNYV 269
Query: 817 PRFWTFETGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYPR 990
P WT + GC++C+ L + + P V +G+FIEQPTP YP+
Sbjct: 270 PNSWTQDNGCTLCEFDTVDLSAV--DVHPNVSIGVFIEQPTPFLPRFLDILLTLDYPK 325
>gi|4505891|ref|NP_001075.1| (NM_001084) procollagen-lysine,
2-oxoglutarate 5-dioxygenase 3; procollagen-lysine,
2-oxoglutarate 5-dioxygenase 3v; lysyl hydroxylase 3
[Homo sapiens]
Length = 738
Score = 327 bits (837), Expect = 1e-89
Identities = 156/275 (56%), Positives = 209/275 (75%), Gaps = 3/275 (1%)
Frame = +1
Query: 127 DNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNEKEASS--GGGLKVRLLKKA 300
+ LLV+TVAT ETEG+ RF RSA+FFNY ++ LGLGE+W + + GGG KVR LKK
Sbjct: 37 EKLLVITVATAETEGYLRFLRSAEFFNYTVRTLGLGEEWRGGDVARTVGGGQKVRWLKKE 96
Query: 301 LEKHAD-ENLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDRRLEAKYPA 477
+EK+AD E+++I+F DSYDV+ A P ELLKKF Q+ S+++FSAE +P+ L +YP
Sbjct: 97 MEKYADREDMIIMFVDSYDVILAGSPTELLKKFVQSGSRLLFSAESFCWPEWGLAEQYPE 156
Query: 478 VSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERINITLDHRC 657
V GKRFL SGGFIG+A + ++V +W+ +D D DQLFYT+++LDP RE++++ LDH+
Sbjct: 157 VGTGKRFLNSGGFIGFATTIHQIVRQWKYKDDDDDQLFYTRLYLDPGLREKLSLNLDHKS 216
Query: 658 RIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYIPRFWTFE 837
RIFQNL+GALDEVVLKF+ +VR RN+AYDTLP+++HGNGPTKLQLNYLGNY+P WT E
Sbjct: 217 RIFQNLNGALDEVVLKFDRNRVRIRNVAYDTLPIVVHGNGPTKLQLNYLGNYVPNGWTPE 276
Query: 838 TGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTP 942
GC C++ R+L G + P V + +F+EQPTP
Sbjct: 277 GGCGFCNQDRRTLP--GGQPPPRVFLAVFVEQPTP 309
>gi|17986277|ref|NP_001837.1| (NM_001846) alpha 2 type IV collagen
preproprotein; canstatin [Homo sapiens]
Length = 1712
Score = 34.3 bits (77), Expect = 0.15
Identities = 20/46 (43%), Positives = 22/46 (47%)
Frame = +3
Query: 39 PGPGHAAPATSGPTGLAASDRNEG*RQTGGQPLGAHGGHEGDRGVP 176
PGP + GP GL D G R G+ LGA G GD GVP
Sbjct: 749 PGPD----GSPGPIGLPGPDGPPGERGLPGEVLGAQPGPRGDAGVP 790
>gi|15890086|ref|NP_203699.1| (NM_033380) alpha 5 type IV collagen
isoform 2, precursor; collagen IV, alpha-5 polypeptide;
collagen of basement membrane, alpha-5 chain [Homo
sapiens]
Length = 1691
Score = 29.6 bits (65), Expect = 3.6
Identities = 20/52 (38%), Positives = 25/52 (47%), Gaps = 3/52 (5%)
Frame = +3
Query: 39 PGPG--HAAPATSGPTGLAASDRNEG*RQTGGQP-LGAHGGHEGDRGVPTLQ 185
PGP P GP GL + +G + GQP L G +GD+G P LQ
Sbjct: 1263 PGPTGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQ 1314
Score = 29.3 bits (64), Expect(2) = 0.15
Identities = 36/134 (26%), Positives = 50/134 (36%), Gaps = 2/134 (1%)
Frame = +3
Query: 366 LRAPRAAEEVPAGQ-EPGGLLSRGAHLPGPQAGGQVPGRLRRQEVPGLWRLHWLCPXXXX 542
L+ P +P + EPG ++ + LPGP+ PG Q +PG
Sbjct: 142 LQGPPGPPGIPGMKGEPGSIIM--SSLPGPKGNPGYPGPPGIQGLPG------------- 186
Query: 543 XXXXXXXXXXXXRPTLLYQDILGPGEEGADQYHLGPP-LPYLPESGWSLG*GCAQVRDGP 719
PT + I PG G +GPP P LP ++G +
Sbjct: 187 -------------PTGIPGPIGPPGPPGL----MGPPGPPGLPGPKGNMG---LNFQGPK 226
Query: 720 SESEEPGLRHPPGP 761
E E GL+ PPGP
Sbjct: 227 GEKGEQGLQGPPGP 240
Score = 23.5 bits (49), Expect(2) = 0.15
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 735 PGLRHPPGPDSRQWAHQAAAELPGQ 809
PG+R PPGP + + PG+
Sbjct: 272 PGIRGPPGPPGGEKGEKGEQGEPGK 296
>gi|15890088|ref|NP_203700.1| (NM_033381) alpha 5 type IV collagen
isoform 3, precursor; collagen IV, alpha-5 polypeptide;
collagen of basement membrane, alpha-5 chain [Homo
sapiens]
Length = 1688
Score = 29.3 bits (64), Expect(2) = 0.15
Identities = 36/134 (26%), Positives = 50/134 (36%), Gaps = 2/134 (1%)
Frame = +3
Query: 366 LRAPRAAEEVPAGQ-EPGGLLSRGAHLPGPQAGGQVPGRLRRQEVPGLWRLHWLCPXXXX 542
L+ P +P + EPG ++ + LPGP+ PG Q +PG
Sbjct: 142 LQGPPGPPGIPGMKGEPGSIIM--SSLPGPKGNPGYPGPPGIQGLPG------------- 186
Query: 543 XXXXXXXXXXXXRPTLLYQDILGPGEEGADQYHLGPP-LPYLPESGWSLG*GCAQVRDGP 719
PT + I PG G +GPP P LP ++G +
Sbjct: 187 -------------PTGIPGPIGPPGPPGL----MGPPGPPGLPGPKGNMG---LNFQGPK 226
Query: 720 SESEEPGLRHPPGP 761
E E GL+ PPGP
Sbjct: 227 GEKGEQGLQGPPGP 240
Score = 28.5 bits (62), Expect = 8.0
Identities = 21/52 (40%), Positives = 26/52 (49%), Gaps = 3/52 (5%)
Frame = +3
Query: 39 PG-PG-HAAPATSGPTGLAASDRNEG*RQTGGQP-LGAHGGHEGDRGVPTLQ 185
PG PG P GP GL + +G + GQP L G +GD+G P LQ
Sbjct: 1260 PGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQ 1311
Score = 23.5 bits (49), Expect(2) = 0.15
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 735 PGLRHPPGPDSRQWAHQAAAELPGQ 809
PG+R PPGP + + PG+
Sbjct: 272 PGIRGPPGPPGGEKGEKGEQGEPGK 296
>gi|4502955|ref|NP_000486.1| (NM_000495) alpha 5 type IV collagen
isoform 1, precursor; collagen IV, alpha-5 polypeptide;
collagen of basement membrane, alpha-5 chain [Homo
sapiens]
Length = 1685
Score = 29.3 bits (64), Expect(2) = 0.15
Identities = 36/134 (26%), Positives = 50/134 (36%), Gaps = 2/134 (1%)
Frame = +3
Query: 366 LRAPRAAEEVPAGQ-EPGGLLSRGAHLPGPQAGGQVPGRLRRQEVPGLWRLHWLCPXXXX 542
L+ P +P + EPG ++ + LPGP+ PG Q +PG
Sbjct: 142 LQGPPGPPGIPGMKGEPGSIIM--SSLPGPKGNPGYPGPPGIQGLPG------------- 186
Query: 543 XXXXXXXXXXXXRPTLLYQDILGPGEEGADQYHLGPP-LPYLPESGWSLG*GCAQVRDGP 719
PT + I PG G +GPP P LP ++G +
Sbjct: 187 -------------PTGIPGPIGPPGPPGL----MGPPGPPGLPGPKGNMG---LNFQGPK 226
Query: 720 SESEEPGLRHPPGP 761
E E GL+ PPGP
Sbjct: 227 GEKGEQGLQGPPGP 240
Score = 23.5 bits (49), Expect(2) = 0.15
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 735 PGLRHPPGPDSRQWAHQAAAELPGQ 809
PG+R PPGP + + PG+
Sbjct: 272 PGIRGPPGPPGGEKGEKGEQGEPGK 296
>gi|4506431|ref|NP_002881.1| (NM_002890) RAS p21 protein activator 1
isoform 1; RAS p21 protein activator (GTPase activating
protein); GTPase activating protein;
triphosphatase-activating protein [Homo sapiens]
Length = 1047
Score = 33.5 bits (75), Expect = 0.25
Identities = 25/68 (36%), Positives = 28/68 (40%), Gaps = 1/68 (1%)
Frame = +3
Query: 582 PTLLYQDILGPGEEGADQYHLGPPLPYLPESGWSLG*-GCAQVRDGPSESEEPGLRHPPG 758
PT L + LGPG + PP PYLP G LG DGP EE
Sbjct: 120 PTSLLAETLGPG----GGFPPLPPPPYLPPLGAGLGTVDEGDSLDGPEYEEEEVAIPLTA 175
Query: 759 PDSRQWAH 782
P + QW H
Sbjct: 176 PPTNQWYH 183
>gi|23110974|ref|NP_690056.1| (NM_152843) light ear protein isoform
d [Homo sapiens]
Length = 528
Score = 31.2 bits (69), Expect = 1.2
Identities = 15/47 (31%), Positives = 25/47 (52%), Gaps = 1/47 (2%)
Frame = -2
Query: 354 VIAVCEENDQVLV-CMLFQGFLQQPNLQPSTRRCLLLIPVLPQPQRL 217
++ C+ + +L C+L++G + L PS +LL PQ QRL
Sbjct: 179 ILQTCQRSPHILAGCILYKGLIVSTQLPPSLTAKVLLHRTAPQEQRL 225
>gi|23110972|ref|NP_690055.1| (NM_152842) light ear protein isoform
e [Homo sapiens]
Length = 232
Score = 31.2 bits (69), Expect = 1.2
Identities = 15/47 (31%), Positives = 25/47 (52%), Gaps = 1/47 (2%)
Frame = -2
Query: 354 VIAVCEENDQVLV-CMLFQGFLQQPNLQPSTRRCLLLIPVLPQPQRL 217
++ C+ + +L C+L++G + L PS +LL PQ QRL
Sbjct: 174 ILQTCQRSPHILAGCILYKGLIVSTQLPPSLTAKVLLHRTAPQEQRL 220
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 10,046,356
Number of sequences in database: 19,244
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21965494
Number of Sequences: 19244
Number of extensions: 599143
Number of successful extensions: 2852
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1687
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 2404
length of query: 346
length of database: 10,046,356
effective HSP length: 47
effective length of query: 298
effective length of database: 9,141,888
effective search space: 2724282624
effective search space used: 2724282624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search to RefSeq (Mouse) database
Query= 20030531C-000510 (20030531C-000510) 20030531C-000510
(1039 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
15,330 sequences; 7,155,815 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|6755106|ref|NP_035252.1| (NM_011122) procollagen-lysine, 2-o... 509 e-145
Alignment gi|6755108|ref|NP_036091.1| (NM_011961) procollagen lysine, 2-o... 334 4e-92
Alignment gi|6755110|ref|NP_036092.1| (NM_011962) procollagen-lysine, 2-o... 332 1e-91
Alignment gi|9506945|ref|NP_062275.1| (NM_019402) poly(A) binding protein... 35 0.060
Alignment gi|30410760|ref|NP_082542.2| (NM_028266) procollagen, type XVI,... 35 0.079
Alignment gi|14719436|ref|NP_149030.1| (NM_033041) hairy and enhancer of ... 32 0.39
Alignment gi|28893065|ref|NP_796092.1| (NM_177118) RIKEN cDNA A830073O21 ... 32 0.51
Alignment gi|13899211|ref|NP_081632.1| (NM_027356) RIKEN cDNA 2700038N03;... 32 0.51
Alignment gi|6679271|ref|NP_032841.1| (NM_008815) ets variant gene 4 (E1A... 32 0.67
Alignment gi|31982382|ref|NP_038891.3| (NM_013863) Bcl2-associated athano... 31 0.87
>gi|6755106|ref|NP_035252.1| (NM_011122) procollagen-lysine,
2-oxoglutarate 5-dioxygenase 1; procollagen-lysine,
2-oxoglutarate 5-dioxygenase; lysyl hydroxylase 1 [Mus
musculus]
Length = 728
Score = 509 bits (1311), Expect = e-145
Identities = 256/300 (85%), Positives = 272/300 (90%), Gaps = 3/300 (1%)
Frame = +1
Query: 100 ETKGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNEK--EASSGGG 273
+ K DAK EDNLLVLTVATKETEGFRRFKRSAQFFNYKIQ+LGLGEDW+ A++GGG
Sbjct: 17 QAKDDAKLEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQSLGLGEDWSVDGGPAAAGGG 76
Query: 274 LKVRLLKKALEKHAD-ENLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPD 450
KVRLLKKALEKHAD E+LVILF DSYDVVFASGPRELLKKF+QAKSQVVFSAEE IYPD
Sbjct: 77 QKVRLLKKALEKHADKEDLVILFVDSYDVVFASGPRELLKKFQQAKSQVVFSAEEHIYPD 136
Query: 451 RRLEAKYPAVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRER 630
RRLEAKYP V DGKRFLGSGGFIGYAP+LSKLVAEWEGQDSDSDQLFYTKIFL+PEKRE+
Sbjct: 137 RRLEAKYPTVPDGKRFLGSGGFIGYAPSLSKLVAEWEGQDSDSDQLFYTKIFLNPEKREQ 196
Query: 631 INITLDHRCRIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGN 810
INI+LDHRCRIFQNLDGALDEVVLKFEMG VRARNLAYDTLPV++HGNGPTKLQLNYLGN
Sbjct: 197 INISLDHRCRIFQNLDGALDEVVLKFEMGHVRARNLAYDTLPVVVHGNGPTKLQLNYLGN 256
Query: 811 YIPRFWTFETGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYPR 990
YIPRFWTFETGC+VCDEGLRSLKGIGDEALPTVLVG+FIEQPTP YP+
Sbjct: 257 YIPRFWTFETGCTVCDEGLRSLKGIGDEALPTVLVGVFIEQPTPFLSLFFLRLLRLRYPQ 316
>gi|6755108|ref|NP_036091.1| (NM_011961) procollagen lysine,
2-oxoglutarate 5-dioxygenase 2; lysyl hydroxylase 2 [Mus
musculus]
Length = 737
Score = 334 bits (857), Expect = 4e-92
Identities = 163/293 (55%), Positives = 212/293 (71%), Gaps = 3/293 (1%)
Frame = +1
Query: 121 PEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNEKEA--SSGGGLKVRLLK 294
P D LLV+TVATKE +GF RF SA++FNY ++ LG G++W + S GGG KVRLLK
Sbjct: 35 PADKLLVITVATKENDGFHRFMNSAKYFNYTVKVLGQGQEWRGGDGMNSIGGGQKVRLLK 94
Query: 295 KALEKHAD-ENLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDRRLEAKY 471
+A+E +A E+LVILFT+ +DVVFA GP E+LKKF++ ++VF+A+ L++PD+RL KY
Sbjct: 95 EAMEHYASQEDLVILFTECFDVVFAGGPEEVLKKFQKTNHKIVFAADGLLWPDKRLADKY 154
Query: 472 PAVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERINITLDH 651
P V GKR+L SGGFIGYAP +S+LV +W QD+D DQLFYTK+++DP KRE NITLDH
Sbjct: 155 PVVHIGKRYLNSGGFIGYAPYISRLVQQWNLQDNDDDQLFYTKVYIDPLKREAFNITLDH 214
Query: 652 RCRIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYIPRFWT 831
+C+IFQ L+GA DEVVLKFE G+ R +N Y+TLPV I+GNGPTK+ LNY GNY+P WT
Sbjct: 215 KCKIFQALNGATDEVVLKFENGKSRVKNTFYETLPVAINGNGPTKILLNYFGNYVPNSWT 274
Query: 832 FETGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYPR 990
E GC++CD L + + P V +G+FIEQPTP YP+
Sbjct: 275 QENGCALCDVDTIDLSTV--DVPPKVTLGVFIEQPTPFLPRFLNLLLTLDYPK 325
>gi|6755110|ref|NP_036092.1| (NM_011962) procollagen-lysine,
2-oxoglutarate 5-dioxygenase 3; lysyl hydroxylase 2;
lysyl hydroxylase 3 [Mus musculus]
Length = 741
Score = 332 bits (852), Expect = 1e-91
Identities = 158/275 (57%), Positives = 212/275 (76%), Gaps = 3/275 (1%)
Frame = +1
Query: 127 DNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNEKEASS--GGGLKVRLLKKA 300
D LLV+TVAT ETEG+RRF +SA+FFNY ++ LGLG++W + + GGG KVR LKK
Sbjct: 40 DKLLVITVATAETEGYRRFLQSAEFFNYTVRTLGLGQEWRGGDVARTVGGGQKVRWLKKE 99
Query: 301 LEKHADE-NLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDRRLEAKYPA 477
+EK+AD+ +++I+F DSYDV+ AS P ELLKKF Q+ S ++FSAE +P+ L +YP
Sbjct: 100 MEKYADQKDMIIMFVDSYDVILASSPTELLKKFVQSGSHLLFSAESFCWPEWGLAEQYPE 159
Query: 478 VSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERINITLDHRC 657
V GKRFL SGGFIG+AP + ++V +W +D D DQLFYT+++LDP RE++ ++LDH+
Sbjct: 160 VGMGKRFLNSGGFIGFAPTIHQIVRQWNYKDDDDDQLFYTQLYLDPGLREKLKLSLDHKS 219
Query: 658 RIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYIPRFWTFE 837
RIFQNL+GALDEV+LKF+ +VR RN+AYDTLPV++HGNGPTKLQLNYLGNY+P WT +
Sbjct: 220 RIFQNLNGALDEVILKFDQNRVRIRNVAYDTLPVVVHGNGPTKLQLNYLGNYVPNGWTPQ 279
Query: 838 TGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTP 942
GC C++ LR+L G + P VL+ +F+EQPTP
Sbjct: 280 GGCGFCNQTLRTLP--GGQPPPRVLLAVFVEQPTP 312
>gi|9506945|ref|NP_062275.1| (NM_019402) poly(A) binding protein,
nuclear 1; poly(A) binding protein II [Mus musculus]
Length = 302
Score = 35.0 bits (79), Expect = 0.060
Identities = 28/79 (35%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +3
Query: 273 AEGSAAEESPGKACRREPGHSLH-RQL*RGVCLRAPRAAEEVPAGQEPGGLLSRGAHLPG 449
A G A E PG A + G+ L +L G L P EE P + P G PG
Sbjct: 31 AGGEAGEGDPGGA--GDYGNGLESEELEPGELLPEPEPEEEPPRPRAPPGA-------PG 81
Query: 450 PQAGGQVPGRLRRQEVPGL 506
P G PG +E PGL
Sbjct: 82 PGPGSGAPGSQEEEEEPGL 100
>gi|30410760|ref|NP_082542.2| (NM_028266) procollagen, type XVI, alpha
1; [a]1 (XVI) collagen; similar to collagen alpha 1(XVI)
chain precursor [Mus musculus]
Length = 1580
Score = 34.7 bits (78), Expect = 0.079
Identities = 48/168 (28%), Positives = 56/168 (32%), Gaps = 12/168 (7%)
Frame = +3
Query: 39 PGP-GHAAPATSGPTGLAASDRNEG*RQTGGQPLGAHGGHEGDRGVPTLQALSPVLQLQD 215
PGP G P G GL G + T G+P G EG +G P Q L L
Sbjct: 759 PGPEGVGHPGKPGQPGLPGVQGPPGPKGTQGEPGPPGTGAEGPQGEPGTQGLPGTQGLPG 818
Query: 216 PXXXXXXXXXXXX--------XIVGWRAEGSAAEESPG-KACRREPGHSLHRQL*RGVCL 368
P I G+ PG K R E G G C
Sbjct: 819 PRGPPGSAGEKGAQGSPGPKGAIGPMGPPGAGVSGPPGQKGSRGEKGEP-------GEC- 870
Query: 369 RAPRAAEEVPAGQEPG--GLLSRGAHLPGPQAGGQVPGRLRRQEVPGL 506
P E + +G PG GL + PGPQ VPG +PGL
Sbjct: 871 SCPSRGEPIFSGM-PGAPGLWMGSSSQPGPQGPPGVPGPPGPPGMPGL 917
>gi|14719436|ref|NP_149030.1| (NM_033041) hairy and enhancer of
split 7; bHLH factor Hes7 [Mus musculus]
Length = 225
Score = 32.3 bits (72), Expect = 0.39
Identities = 23/67 (34%), Positives = 27/67 (39%)
Frame = +3
Query: 603 ILGPGEEGADQYHLGPPLPYLPESGWSLG*GCAQVRDGPSESEEPGLRHPPGPDSRQWAH 782
ILGP H GPP P L WS ++ D + + GL PP P RQ
Sbjct: 153 ILGPALHQRPPVHQGPPSPRL---AWSPSHCSSRAGDSGAPAPLTGLLPPPPPPYRQDGA 209
Query: 783 QAAAELP 803
A LP
Sbjct: 210 PKAPPLP 216
>gi|28893065|ref|NP_796092.1| (NM_177118) RIKEN cDNA A830073O21 gene
[Mus musculus]
Length = 243
Score = 32.0 bits (71), Expect = 0.51
Identities = 21/43 (48%), Positives = 24/43 (54%), Gaps = 4/43 (9%)
Frame = +3
Query: 396 PAGQEPGGLLSRGAHLPGPQAGGQVPGRLR--RQEV--PGLWR 512
P G PGGL RG H G + G ++P RLR RQE PG R
Sbjct: 113 PGGLHPGGLSPRGWHPGGLRRGLRLPRRLRDARQEAAEPGRTR 155
>gi|13899211|ref|NP_081632.1| (NM_027356) RIKEN cDNA 2700038N03; DNA
segment, Chr 5, ERATO Doi 655, expressed [Mus musculus]
Length = 217
Score = 32.0 bits (71), Expect = 0.51
Identities = 24/92 (26%), Positives = 35/92 (37%), Gaps = 1/92 (1%)
Frame = -2
Query: 1023 CSWCEGKAASVPGVLEAQEPLEEQGQERRGLFDEQADQDCGQ-SFIPNALEAAQALITHG 847
CSW G+++ VPG+ Q LE G + G + C + S Q + H
Sbjct: 62 CSWPGGQSSGVPGLPALQGALEAMGDKPPGFRGSRNWIGCVEASLCLEHFGGPQGRLCH- 120
Query: 846 APRLEGPEARDXXXXXXXXXLGGPIAVNQDRE 751
PR G + GGP+ V D +
Sbjct: 121 LPRGVGLRGEEERLYSHFTTGGGPVMVGGDAD 152
>gi|6679271|ref|NP_032841.1| (NM_008815) ets variant gene 4 (E1A
enhancer binding protein, E1AF); polyomavirus enhancer
activator 3 [Mus musculus]
Length = 555
Score = 31.6 bits (70), Expect = 0.67
Identities = 26/73 (35%), Positives = 33/73 (44%)
Frame = +3
Query: 273 AEGSAAEESPGKACRREPGHSLHRQL*RGVCLRAPRAAEEVPAGQEPGGLLSRGAHLPGP 452
A+ ++ SP PGH+ H P AA PA Q PG +S A PGP
Sbjct: 24 AQAASLRPSPATLVVSSPGHAEH-----------PPAA---PA-QTPGPQVSASARGPGP 68
Query: 453 QAGGQVPGRLRRQ 491
AGG GR+ R+
Sbjct: 69 VAGGS--GRMERR 79
>gi|31982382|ref|NP_038891.3| (NM_013863) Bcl2-associated athanogene
3; Bcl-2-interacting death supressor [Mus musculus]
Length = 577
Score = 31.2 bits (69), Expect = 0.87
Identities = 24/70 (34%), Positives = 28/70 (39%), Gaps = 7/70 (10%)
Frame = -2
Query: 1002 AASVPGVLE------AQEPLEEQGQERRGLFDE-QADQDCGQSFIPNALEAAQALITHGA 844
A S PGV A P Q R G+ + Q D+ CGQ AAQ HG
Sbjct: 115 AYSQPGVQRFRTEAAAATPQRSQSPLRGGMTEAAQTDKQCGQMPATATTAAAQPPTAHGP 174
Query: 843 PRLEGPEARD 814
R + P A D
Sbjct: 175 ERSQSPAASD 184
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 7,155,815
Number of sequences in database: 15,330
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15237570
Number of Sequences: 15330
Number of extensions: 392396
Number of successful extensions: 1664
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1649
length of query: 346
length of database: 7,155,815
effective HSP length: 47
effective length of query: 298
effective length of database: 6,435,305
effective search space: 1917720890
effective search space used: 1917720890
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)