Search to RefSeq (Human) database
Query= 20030531C-000521 (20030531C-000521) 20030531C-000521
(959 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,244 sequences; 10,046,356 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4759274|ref|NP_004777.1| (NM_004786) thioredoxin-like, 32kDa... 486 e-137
Alignment gi|4507745|ref|NP_003320.1| (NM_003329) thioredoxin [Homo sapiens] 88 1e-17
Alignment gi|31543834|ref|NP_115619.3| (NM_032243) thioredoxin domain-con... 74 2e-13
Alignment gi|5730104|ref|NP_006532.1| (NM_006541) thioredoxin-like; PKC-i... 59 5e-09
Alignment gi|21361837|ref|NP_065095.2| (NM_020362) HT014 [Homo sapiens] 53 4e-07
Alignment gi|13540604|ref|NP_110437.1| (NM_030810) thioredoxin domain con... 50 3e-06
Alignment gi|31982925|ref|NP_071368.2| (NM_022085) thioredoxin domain con... 50 3e-06
Alignment gi|21361403|ref|NP_036605.2| (NM_012473) thioredoxin 2 precurso... 44 1e-04
Alignment gi|21361657|ref|NP_005304.3| (NM_005313) glucose regulated prot... 40 0.002
Alignment gi|31543836|ref|NP_057700.2| (NM_016616) NM23-H8; sperm-specifi... 36 0.046
>gi|4759274|ref|NP_004777.1| (NM_004786) thioredoxin-like, 32kDa;
thioredoxin-related 32 kDa protein; thioredoxin-like,
32kD [Homo sapiens]
Length = 289
Score = 486 bits (1251), Expect = e-137
Identities = 236/237 (99%), Positives = 236/237 (99%)
Frame = +3
Query: 231 MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 410
MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD
Sbjct: 1 MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 60
Query: 411 VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP 590
VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP
Sbjct: 61 VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP 120
Query: 591 KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSM 770
KGYMDLMPFINKAGCECLNESDEHGFDNCLRKD TFLESDCDEQLLITVAFNQPVKLYSM
Sbjct: 121 KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDTTFLESDCDEQLLITVAFNQPVKLYSM 180
Query: 771 KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVK 941
KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVK
Sbjct: 181 KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVK 237
>gi|4507745|ref|NP_003320.1| (NM_003329) thioredoxin [Homo sapiens]
Length = 105
Score = 87.8 bits (216), Expect = 1e-17
Identities = 43/102 (42%), Positives = 57/102 (55%)
Frame = +3
Query: 240 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 419
VK + S FQ L AG +L VV F+ CGPC I P F S+S KY +FLEVDV
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMINPFFHSLSEKYSNVIFLEVDVDD 61
Query: 420 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQ 545
CQ A+ + TPTF FF+ ++ ++ GA+ LE I +
Sbjct: 62 CQDVASECEVKCTPTFQFFKKGQKVGEFSGANKEKLEATINE 103
>gi|31543834|ref|NP_115619.3| (NM_032243) thioredoxin
domain-containing 2; sperm-specific thioredoxin;
thioredoxin domain-containing 2 (spermatozoa) [Homo
sapiens]
Length = 486
Score = 73.9 bits (180), Expect = 2e-13
Identities = 39/101 (38%), Positives = 55/101 (53%)
Frame = +3
Query: 240 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 419
VK + S DF+ L AG RL V F+ CGPC I P F ++S K+ VFLEVD
Sbjct: 383 VKVILSKEDFEASLKEAGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADN 442
Query: 420 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIK 542
C+ I PTF F++ + ++D+ GA L+EK++
Sbjct: 443 CEEVVRECAIMCVPTFQFYKKEEKVDELCGA----LKEKLE 479
>gi|5730104|ref|NP_006532.1| (NM_006541) thioredoxin-like;
PKC-interacting cousin of thioredoxin [Homo sapiens]
Length = 335
Score = 58.9 bits (141), Expect = 5e-09
Identities = 34/118 (28%), Positives = 58/118 (48%), Gaps = 3/118 (2%)
Frame = +3
Query: 231 MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 410
+ V+ VGS F+ L L VV F C ++ + ++ + PQ F++++
Sbjct: 10 VAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLE 69
Query: 411 VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLEND---PGSNE 575
+ IS+ PTFLFF+N +ID+ GA A L +K+++H + P +NE
Sbjct: 70 AEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSANE 127
>gi|21361837|ref|NP_065095.2| (NM_020362) HT014 [Homo sapiens]
Length = 211
Score = 52.8 bits (125), Expect = 4e-07
Identities = 34/94 (36%), Positives = 49/94 (51%), Gaps = 6/94 (6%)
Frame = +3
Query: 636 ECLNESDEHGFDNCL-----RKDMT-FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQ 797
+CLNES E R D + F+ESD DE+LL + F VKL + G D+
Sbjct: 41 QCLNESREGSGRGVFKPWEERTDRSKFVESDADEELLFNIPFTGNVKLKGIIIMGEDDDS 100
Query: 798 GPKYVKIFINLPRSMDFEEAERSEPTQALELTED 899
P ++++ N+P+ M F++ ER EP Q L D
Sbjct: 101 HPSEMRLYKNIPQ-MSFDDTER-EPDQTFSLNRD 132
>gi|13540604|ref|NP_110437.1| (NM_030810) thioredoxin domain
containing 5; thioredoxin related protein; muted [Homo
sapiens]
Length = 324
Score = 49.7 bits (117), Expect = 3e-06
Identities = 45/183 (24%), Positives = 83/183 (44%), Gaps = 23/183 (12%)
Frame = +3
Query: 225 LRMVGVKPVGSDPDFQP-----------ELSGAGSRLAV------VKFTMRGCGPCLRIA 353
L+ + +PV +P+ +P ELS + L V +KF CG C +A
Sbjct: 57 LQTLNEEPVTPEPEVEPPSAPELKQGLYELSASNFELHVAQGDHFIKFFAPWCGHCKALA 116
Query: 354 PAFSSMSN--KYPQAVFL-EVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQG-ADAV 521
P + ++ ++ + V + +VD Q + N + PT L+FR+ ++DQY+G D
Sbjct: 117 PTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFRDGKKVDQYKGKRDLE 176
Query: 522 GLEEKIKQHLENDPGSNEDTDIPK--GYMDLMPFINKAGCECLNESDEHGFDNCLRKDMT 695
L E ++ L+ +T P + P +K L E++ FD+ + + +T
Sbjct: 177 SLREYVESQLQRTETGATETVTPSEAPVLAAEPEADKGTVLALTENN---FDDTIAEGIT 233
Query: 696 FLE 704
F++
Sbjct: 234 FIK 236
Score = 33.9 bits (76), Expect = 0.17
Identities = 19/74 (25%), Positives = 33/74 (43%), Gaps = 4/74 (5%)
Frame = +3
Query: 300 LAVVKFTMRGCGPCLRIAPAFSSMSNK-YPQAV---FLEVDVHQCQGTAATNNISATPTF 467
+ +KF CG C +AP + +S K +P EVD + + ++ PT
Sbjct: 232 ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL 291
Query: 468 LFFRNKVRIDQYQG 509
L FR ++ ++ G
Sbjct: 292 LLFRGGKKVSEHSG 305
>gi|31982925|ref|NP_071368.2| (NM_022085) thioredoxin domain
containing 5; thioredoxin related protein; muted [Homo
sapiens]
Length = 360
Score = 49.7 bits (117), Expect = 3e-06
Identities = 45/183 (24%), Positives = 83/183 (44%), Gaps = 23/183 (12%)
Frame = +3
Query: 225 LRMVGVKPVGSDPDFQP-----------ELSGAGSRLAV------VKFTMRGCGPCLRIA 353
L+ + +PV +P+ +P ELS + L V +KF CG C +A
Sbjct: 93 LQTLNEEPVTPEPEVEPPSAPELKQGLYELSASNFELHVAQGDHFIKFFAPWCGHCKALA 152
Query: 354 PAFSSMSN--KYPQAVFL-EVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQG-ADAV 521
P + ++ ++ + V + +VD Q + N + PT L+FR+ ++DQY+G D
Sbjct: 153 PTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFRDGKKVDQYKGKRDLE 212
Query: 522 GLEEKIKQHLENDPGSNEDTDIPK--GYMDLMPFINKAGCECLNESDEHGFDNCLRKDMT 695
L E ++ L+ +T P + P +K L E++ FD+ + + +T
Sbjct: 213 SLREYVESQLQRTETGATETVTPSEAPVLAAEPEADKGTVLALTENN---FDDTIAEGIT 269
Query: 696 FLE 704
F++
Sbjct: 270 FIK 272
Score = 33.9 bits (76), Expect = 0.17
Identities = 19/74 (25%), Positives = 33/74 (43%), Gaps = 4/74 (5%)
Frame = +3
Query: 300 LAVVKFTMRGCGPCLRIAPAFSSMSNK-YPQAV---FLEVDVHQCQGTAATNNISATPTF 467
+ +KF CG C +AP + +S K +P EVD + + ++ PT
Sbjct: 268 ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL 327
Query: 468 LFFRNKVRIDQYQG 509
L FR ++ ++ G
Sbjct: 328 LLFRGGKKVSEHSG 341
Score = 33.1 bits (74), Expect = 0.30
Identities = 26/88 (29%), Positives = 40/88 (44%), Gaps = 6/88 (6%)
Frame = +3
Query: 330 CGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISAT-----PTFLFFRNKVRI 494
CG C R+ P ++ + +KY +V V + TA ++ SA PT F+
Sbjct: 17 CGHCQRLQPTWNDLGDKYNSMEDAKVYVAKVDCTAHSDVCSAQGVRGYPTLKLFKPGQEA 76
Query: 495 DQYQG-ADAVGLEEKIKQHLENDPGSNE 575
+YQG D LE + Q L +P + E
Sbjct: 77 VKYQGPRDFQTLENWMLQTLNEEPVTPE 104
>gi|21361403|ref|NP_036605.2| (NM_012473) thioredoxin 2 precursor;
mitochondrial thioredoxin [Homo sapiens]
Length = 166
Score = 44.3 bits (103), Expect = 1e-04
Identities = 33/127 (25%), Positives = 56/127 (43%), Gaps = 8/127 (6%)
Frame = +3
Query: 153 PVPSRVVFSFSFETGGVAATLPGSLRMVGVKPVG-------SDPDFQPELSGAGSRLAVV 311
P+ SR + + GG+ T P R + + PDFQ + + + + VV
Sbjct: 26 PLTSRALQTPQCSPGGLTVT-PNPARTIYTTRISLTTFNIQDGPDFQDRVVNSETPV-VV 83
Query: 312 KFTMRGCGPCLRIAPAFSSM-SNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKV 488
F + CGPC + P M + ++ + V +VD+ A +SA PT L +N
Sbjct: 84 DFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGD 143
Query: 489 RIDQYQG 509
+D++ G
Sbjct: 144 VVDKFVG 150
>gi|21361657|ref|NP_005304.3| (NM_005313) glucose regulated protein,
58kDa; glucose regulated protein, 58kD [Homo sapiens]
Length = 505
Score = 40.4 bits (93), Expect = 0.002
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Frame = +3
Query: 255 SDPDFQPELSGAGSR-LAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFL-EVDVHQCQG 428
+D +F+ +S GS L +V+F CG C R+AP + + + + V L +VD
Sbjct: 31 TDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTN 90
Query: 429 TAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPG 566
T +S PT FR+ Y G + I HL+ G
Sbjct: 91 TCNKYGVSGYPTLKIFRDGEEAGAYDGPRTA---DGIVSHLKKQAG 133
>gi|31543836|ref|NP_057700.2| (NM_016616) NM23-H8; sperm-specific
thioredoxin 2 [Homo sapiens]
Length = 588
Score = 35.8 bits (81), Expect = 0.046
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = +3
Query: 300 LAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQG--TAATNNISATPTFLF 473
L V+ CGPC + P F + N+ + L V + T P FLF
Sbjct: 29 LTVIDVYQAWCGPCRAMQPLFRKLKNELNEDEILHFAVAEADNIVTLQPFRDKCEPVFLF 88
Query: 474 FRNKVRIDQYQGADAVGLEEKI 539
N I++ QGA+A + +K+
Sbjct: 89 SVNGKIIEKIQGANAPLVNKKV 110
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 10,046,356
Number of sequences in database: 19,244
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17804469
Number of Sequences: 19244
Number of extensions: 429243
Number of successful extensions: 1288
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of query: 319
length of database: 10,046,356
effective HSP length: 47
effective length of query: 272
effective length of database: 9,141,888
effective search space: 2486593536
effective search space used: 2486593536
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search to RefSeq (Mouse) database
Query= 20030531C-000521 (20030531C-000521) 20030531C-000521
(959 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
15,330 sequences; 7,155,815 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|31543902|ref|NP_058072.2| (NM_016792) thioredoxin-like; thio... 485 e-137
Alignment gi|6755911|ref|NP_035790.1| (NM_011660) thioredoxin 1; thioredo... 85 5e-17
Alignment gi|23943824|ref|NP_705739.1| (NM_153519) thioredoxin domain con... 72 5e-13
Alignment gi|27229039|ref|NP_080408.2| (NM_026132) RIKEN cDNA 4930429J24 ... 65 4e-11
Alignment gi|31981269|ref|NP_075629.2| (NM_023140) thioredoxin-like 2; PK... 59 3e-09
Alignment gi|28076883|ref|NP_079687.2| (NM_025411) thioredoxin family Trp... 53 3e-07
Alignment gi|9903609|ref|NP_064297.1| (NM_019913) thioredoxin 2; thioredo... 43 2e-04
Alignment gi|21703732|ref|NP_663342.1| (NM_145367) similar to thioredoxin... 42 6e-04
Alignment gi|6679687|ref|NP_031978.1| (NM_007952) glucose regulated prote... 41 0.001
Alignment gi|31712004|ref|NP_853622.1| (NM_181591) thioredoxin domain con... 33 0.21
>gi|31543902|ref|NP_058072.2| (NM_016792) thioredoxin-like;
thioredoxin-related protein; thioredoxin-like (32kD)
[Mus musculus]
Length = 289
Score = 485 bits (1248), Expect = e-137
Identities = 235/237 (99%), Positives = 236/237 (99%)
Frame = +3
Query: 231 MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 410
MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD
Sbjct: 1 MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 60
Query: 411 VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP 590
VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNED DIP
Sbjct: 61 VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDADIP 120
Query: 591 KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSM 770
KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDM+FLESDCDEQLLITVAFNQPVKLYSM
Sbjct: 121 KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDMSFLESDCDEQLLITVAFNQPVKLYSM 180
Query: 771 KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVK 941
KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVK
Sbjct: 181 KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVK 237
>gi|6755911|ref|NP_035790.1| (NM_011660) thioredoxin 1; thioredoxin
[Mus musculus]
Length = 105
Score = 85.1 bits (209), Expect = 5e-17
Identities = 42/103 (40%), Positives = 58/103 (55%)
Frame = +3
Query: 240 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 419
VK + S FQ L+ AG +L VV F+ CGPC I P F S+ +KY VFLEVDV
Sbjct: 2 VKLIESKEAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDD 61
Query: 420 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQH 548
CQ AA + PTF F++ ++ ++ GA+ LE I ++
Sbjct: 62 CQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104
>gi|23943824|ref|NP_705739.1| (NM_153519) thioredoxin domain
containing 2 (spermatozoa); spermatid-specific
thioredoxin 1 [Mus musculus]
Length = 462
Score = 71.6 bits (174), Expect = 5e-13
Identities = 34/102 (33%), Positives = 53/102 (51%)
Frame = +3
Query: 240 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 419
V+ + +F+ L AG +L V F+ CGPC + P F S+S K+ +FLEVD
Sbjct: 359 VRVIKDKEEFEEVLKDAGEKLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTED 418
Query: 420 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQ 545
C+ I PTF F++N+ ++ ++ GA LE I +
Sbjct: 419 CEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISE 460
>gi|27229039|ref|NP_080408.2| (NM_026132) RIKEN cDNA 4930429J24 [Mus
musculus]
Length = 153
Score = 65.5 bits (158), Expect = 4e-11
Identities = 40/130 (30%), Positives = 63/130 (47%), Gaps = 22/130 (16%)
Frame = +3
Query: 222 SLRMVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFL 401
S ++ VK + + + + S AG++L VV+F+ + CGPC IAP F +MS KY F
Sbjct: 22 SQMLIMVKRIKNMSELKELFSDAGNKLVVVEFSAKWCGPCKTIAPVFQAMSLKYQNVTFA 81
Query: 402 EVDVHQCQGTAATNNISATPTFLFFRNKVRIDQY----------------------QGAD 515
+VDV + A +I+ PTF F+ ++ + GAD
Sbjct: 82 QVDVDSSKELAEHCDITMLPTFQMFKYTQKVTPFSRLKRVLCCLRSGPKSKMIFECHGAD 141
Query: 516 AVGLEEKIKQ 545
A LE+KI++
Sbjct: 142 AKQLEKKIQE 151
>gi|31981269|ref|NP_075629.2| (NM_023140) thioredoxin-like 2; PKC
interacting cousin of thioredoxin [Mus musculus]
Length = 337
Score = 59.3 bits (142), Expect = 3e-09
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Frame = +3
Query: 234 VGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDV 413
V V VGS F+ L L VV F C+++ + ++ ++P F++++
Sbjct: 13 VAVVEVGSAQQFEELLRLKTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEA 72
Query: 414 HQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLEN---DPGSNE 575
+ IS+ PTFLFF+N ++D+ GA A L +K+++H+ + P +NE
Sbjct: 73 EAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGAFPPSTNE 129
>gi|28076883|ref|NP_079687.2| (NM_025411) thioredoxin family Trp26
[Mus musculus]
Length = 222
Score = 52.8 bits (125), Expect = 3e-07
Identities = 34/94 (36%), Positives = 49/94 (51%), Gaps = 6/94 (6%)
Frame = +3
Query: 636 ECLNESDEHGFDNCL-----RKDMT-FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQ 797
+CLNES E R D + F+ESD DE+LL + F VKL + G D+
Sbjct: 41 QCLNESREGSGRGVFKPWEERTDRSKFVESDADEELLFNIPFTGNVKLKGVIIMGEDDDS 100
Query: 798 GPKYVKIFINLPRSMDFEEAERSEPTQALELTED 899
P ++++ N+P+ M F++ ER EP Q L D
Sbjct: 101 HPSEMRLYKNIPQ-MSFDDTER-EPEQTFSLNRD 132
>gi|9903609|ref|NP_064297.1| (NM_019913) thioredoxin 2; thioredoxin
nuclear gene encoding mitochondrial protein;
thioredoxin, mitochondrial [Mus musculus]
Length = 166
Score = 43.1 bits (100), Expect = 2e-04
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +3
Query: 249 VGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSM-SNKYPQAVFLEVDVHQCQ 425
V PDFQ + + + + VV F + CGPC + P M + ++ + V +VD+
Sbjct: 64 VQDGPDFQDRVVNSETPV-VVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHT 122
Query: 426 GTAATNNISATPTFLFFRNKVRIDQYQG 509
A +SA PT L +N +D++ G
Sbjct: 123 DLAIEYEVSAVPTVLAIKNGDVVDKFVG 150
>gi|21703732|ref|NP_663342.1| (NM_145367) similar to thioredoxin
related protein [Mus musculus]
Length = 323
Score = 41.6 bits (96), Expect = 6e-04
Identities = 44/184 (23%), Positives = 82/184 (43%), Gaps = 24/184 (13%)
Frame = +3
Query: 225 LRMVGVKPVGSDPDFQP-----------ELSGAGSRLAV------VKFTMRGCGPCLRIA 353
L+ + +P +P+ +P ELS L V +KF CG C +A
Sbjct: 57 LQTLNEEPATPEPEAEPPRALELKQGLYELSANNFELHVSQGNHFIKFFAPWCGHCKALA 116
Query: 354 PAFSSMSN--KYPQAVFL-EVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQG-ADAV 521
P + ++ ++ + V + +VD Q + + + PT L+FR+ ++DQY+G D
Sbjct: 117 PTWEQLALGLEHSETVKIGKVDCTQHYAVCSEHQVRGYPTLLWFRDGKKVDQYKGKRDLE 176
Query: 522 GLEEKI---KQHLENDPGSNEDTDIPKGYMDLMPFINKAGCECLNESDEHGFDNCLRKDM 692
L + + +Q E P + E ++ P M P +K L E F++ + + +
Sbjct: 177 SLRDYVQSQQQGSEAAPETVEPSEAP--VMAAEPTGDKGTVLALTEK---SFEDTIAQGI 231
Query: 693 TFLE 704
TF++
Sbjct: 232 TFVK 235
Score = 35.8 bits (81), Expect = 0.032
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +3
Query: 300 LAVVKFTMRGCGPCLRIAPAFSSMSNK-YP---QAVFLEVDVHQCQGTAATNNISATPTF 467
+ VKF CG C +AP + +S K +P EVD + + ++ PT
Sbjct: 231 ITFVKFYAPWCGHCKNLAPTWEELSKKEFPGLSDVTIAEVDCTAERNVCSKYSVRGYPTL 290
Query: 468 LFFRNKVRIDQYQG 509
L FR ++ ++ G
Sbjct: 291 LLFRGGEKVGEHNG 304
>gi|6679687|ref|NP_031978.1| (NM_007952) glucose regulated protein;
endoplasmic reticulum protein; glucose regulated
protein, 58 kDa; phospholipase C, alpha [Mus musculus]
Length = 504
Score = 40.8 bits (94), Expect = 0.001
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
Frame = +3
Query: 255 SDPDFQPELSGAGSR-LAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGT 431
+D +F+ +S GS L +V+F CG C R+AP + + + + +VD T
Sbjct: 31 TDENFESRVSDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKIVPLAKVDCTANTNT 90
Query: 432 AATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPG 566
+S PT FR Y G + I HL+ G
Sbjct: 91 CNKYGVSGYPTLKIFRAGEEAGAYDGPRTA---DGIVSHLKKQAG 132
>gi|31712004|ref|NP_853622.1| (NM_181591) thioredoxin domain
containing 3 (spermatozoa) [Mus musculus]
Length = 470
Score = 33.1 bits (74), Expect = 0.21
Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 2/119 (1%)
Frame = +3
Query: 300 LAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQG--TAATNNISATPTFLF 473
L V+ CGPC + F + N+ + L V + T P FLF
Sbjct: 29 LTVIDVYQAWCGPCKAVQSLFRKLKNELNEDEILHFVVAEADNIVTLQPFRDKCEPVFLF 88
Query: 474 FRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIPKGYMDLMPFINKAGCECLNE 650
N I + QGA+A + K+ ++ E+ I G MD ++ + ++E
Sbjct: 89 SLNGKIIAKIQGANAPLINRKVITLID------EERKIVAGEMDRPQYVEIPLVDAIDE 141
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 7,155,815
Number of sequences in database: 15,330
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12627418
Number of Sequences: 15330
Number of extensions: 300098
Number of successful extensions: 967
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of query: 319
length of database: 7,155,815
effective HSP length: 47
effective length of query: 272
effective length of database: 6,435,305
effective search space: 1750402960
effective search space used: 1750402960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)