Search to RefSeq (Human) database
Query= 20030531C-001577 (20030531C-001577) 20030531C-001577
(1308 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,244 sequences; 10,046,356 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|8923911|ref|NP_061167.1| (NM_018697) LanC lantibiotic synthe... 572 e-163
Alignment gi|5174445|ref|NP_006046.1| (NM_006055) lanthionine synthetase ... 305 3e-83
Alignment gi|4502951|ref|NP_000081.1| (NM_000090) alpha 1 type III collag... 33 0.32
Alignment gi|14165448|ref|NP_112733.1| (NM_031365) alpha 3 type IV collag... 33 0.42
Alignment gi|14165446|ref|NP_112732.1| (NM_031364) alpha 3 type IV collag... 33 0.42
Alignment gi|10835113|ref|NP_000082.1| (NM_000091) alpha 3 type IV collag... 33 0.42
Alignment gi|14165442|ref|NP_112730.1| (NM_031362) alpha 3 type IV collag... 33 0.42
Alignment gi|14165450|ref|NP_112734.1| (NM_031366) alpha 3 type IV collag... 33 0.42
Alignment gi|8051588|ref|NP_056653.1| (NM_015838) ficolin 2 isoform c pre... 33 0.42
Alignment gi|4758348|ref|NP_004099.1| (NM_004108) ficolin 2 isoform a pre... 33 0.42
>gi|8923911|ref|NP_061167.1| (NM_018697) LanC lantibiotic synthetase
component C-like 2; testis-specific adriamycin
sensitivity protein; LanC (bacterial lantibiotic
synthetase component C)-like 2; G protein-coupled
receptor 69B [Homo sapiens]
Length = 450
Score = 572 bits (1474), Expect = e-163
Identities = 281/344 (81%), Positives = 300/344 (86%), Gaps = 5/344 (1%)
Frame = +1
Query: 292 MGETISRRLWFQGDWDAEMEERAFPNPFPDYXXXXXXXXXXXXXXXXXL-----TPEELG 456
MGET+S+RL +AEMEERAF NPFPDY T +E G
Sbjct: 1 MGETMSKRLKLHLGGEAEMEERAFVNPFPDYEAAAGALLASGAAEETGCVRPPATTDEPG 60
Query: 457 LPFHSDGKIIHNFTRRIQSKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVT 636
LPFH DGKIIHNF RRIQ+KIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVT
Sbjct: 61 LPFHQDGKIIHNFIRRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVT 120
Query: 637 CDQNYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQ 816
CDQ YLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAV+YHKL+SD ESQEC+TKLLQ
Sbjct: 121 CDQTYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVIYHKLRSDCESQECVTKLLQ 180
Query: 817 LQRTIVCRDSDLPDELLFGRAGYLYALLYVNTEMDPGAVCESAIKEVVDAIIVSGKTLSK 996
LQR++VC++SDLPDELL+GRAGYLYALLY+NTE+ PG VCESAIKEVV+AII SGKTLS+
Sbjct: 181 LQRSVVCQESDLPDELLYGRAGYLYALLYLNTEIGPGTVCESAIKEVVNAIIESGKTLSR 240
Query: 997 EERKAERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKR 1176
EERK ERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDY+RHK+
Sbjct: 241 EERKTERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYVRHKK 300
Query: 1177 FRSRNYPSSLSNETDRLVHWLHGAPGVIHTLMQAYKVVKEEKYL 1308
FRS NYPSSLSNETDRLVHW HGAPGVIH LMQAYKV KEEKYL
Sbjct: 301 FRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYL 344
>gi|5174445|ref|NP_006046.1| (NM_006055) lanthionine synthetase C-like
protein 1; G protein-coupled receptor 69A; LanC
(bacterial lantibiotic synthetase component C)-like 1;
LanC (bacterial lantibiotic synthetase component) [Homo
sapiens]
Length = 399
Score = 305 bits (782), Expect = 3e-83
Identities = 149/321 (46%), Positives = 212/321 (65%)
Frame = +1
Query: 346 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 525
M +RAFPNP+ DY F + G++ F++R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAEGY------------------FDAAGRLTPEFSQRLTNKIRE 42
Query: 526 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 705
LLQQME GLK+ADP D + YTGW GIA+LYL LY V D YL + YVK++L L R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKR 102
Query: 706 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 885
+TFLCGDAGPLAV AV+YHK+ ++ ++++CIT+L+ L + D P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKI----DPHAPNEMLYGRIGY 158
Query: 886 LYALLYVNTEMDPGAVCESAIKEVVDAIIVSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1065
+YALL+VN + +S I+++ + I+ SG+ L+++ + PL+Y+W+++ YVGAA
Sbjct: 159 IYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAA 218
Query: 1066 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSRNYPSSLSNETDRLVHWLHG 1245
HG+AGIYY LMQP+ +V Q L +VKPS+DY+ +F S NYP + + D LVHW HG
Sbjct: 219 HGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHG 278
Query: 1246 APGVIHTLMQAYKVVKEEKYL 1308
APGVI+ L+QAYKV +EEKYL
Sbjct: 279 APGVIYMLIQAYKVFREEKYL 299
>gi|4502951|ref|NP_000081.1| (NM_000090) alpha 1 type III collagen;
Collagen III, alpha-1 polypeptide; collagen, fetal [Homo
sapiens]
Length = 1466
Score = 33.5 bits (75), Expect = 0.32
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Frame = -2
Query: 215 PAGPRASPGK--------AAGAQRCEAGTRGCGGRPAPPRLRTGPRGGCG 90
P GPR +PG+ AAGA R G RG G+P PP GP G G
Sbjct: 298 PMGPRGAPGERGRPGLPGAAGA-RGNDGARGSDGQPGPP----GPPGTAG 342
Score = 32.3 bits (72), Expect = 0.72
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = -2
Query: 242 AGTNLRRGAPAGP--RASPGKAAG----AQRCEAGTRGCGGRPAPPRLRTGPRGGCG 90
AG R G P GP R PG G + G++G GRP PP +GPRG G
Sbjct: 521 AGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPG-PSGPRGQPG 576
Score = 31.2 bits (69), Expect = 1.6
Identities = 17/46 (36%), Positives = 22/46 (46%)
Frame = -2
Query: 215 PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRGGCGGIAA 78
P GPR + G +R G+ G G+P PP P CGG+ A
Sbjct: 1162 PPGPRGNRG-----ERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGA 1202
Score = 28.9 bits (63), Expect = 8.0
Identities = 24/69 (34%), Positives = 26/69 (36%)
Frame = -2
Query: 296 PMSAARPALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRL 117
P A P G A G RG+P GP A+ A R G G G P PP
Sbjct: 839 PGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGA---RGLPGPPGSNGNPGPP-- 893
Query: 116 RTGPRGGCG 90
GP G G
Sbjct: 894 --GPSGSPG 900
>gi|14165448|ref|NP_112733.1| (NM_031365) alpha 3 type IV collagen
isoform 4, precursor; Goodpasture antigen; collagen IV,
alpha-3 polypeptide [Homo sapiens]
Length = 1494
Score = 33.1 bits (74), Expect = 0.42
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -2
Query: 215 PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRG 99
PAGP PG + GT+G G P PP GPRG
Sbjct: 609 PAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPG-EAGPRG 646
Score = 32.3 bits (72), Expect = 0.72
Identities = 26/73 (35%), Positives = 30/73 (40%), Gaps = 7/73 (9%)
Frame = -2
Query: 287 AARPALRGAARYGERAGTNLRRGAPA----GPRASPGKAAGAQRCEAGTRGCGGRPAPPR 120
++RP LRGA + G+ RG P G SPG A G G G P PP
Sbjct: 385 SSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAG-----SPGLPGSPGPPGPPG 439
Query: 119 ---LRTGPRGGCG 90
R GP G G
Sbjct: 440 DIVFRKGPPGDHG 452
Score = 28.9 bits (63), Expect = 8.0
Identities = 23/71 (32%), Positives = 27/71 (37%), Gaps = 8/71 (11%)
Frame = -2
Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPA--------PP 123
P L G G + RG P P PG+ RC G RG G P
Sbjct: 773 PGLPGLPGTPGNEGLDGPRGDPGQP-GPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGR 831
Query: 122 RLRTGPRGGCG 90
R +TGP+G G
Sbjct: 832 RGKTGPKGDPG 842
>gi|14165446|ref|NP_112732.1| (NM_031364) alpha 3 type IV collagen
isoform 3, precursor; Goodpasture antigen; collagen IV,
alpha-3 polypeptide [Homo sapiens]
Length = 1498
Score = 33.1 bits (74), Expect = 0.42
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -2
Query: 215 PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRG 99
PAGP PG + GT+G G P PP GPRG
Sbjct: 609 PAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPG-EAGPRG 646
Score = 32.3 bits (72), Expect = 0.72
Identities = 26/73 (35%), Positives = 30/73 (40%), Gaps = 7/73 (9%)
Frame = -2
Query: 287 AARPALRGAARYGERAGTNLRRGAPA----GPRASPGKAAGAQRCEAGTRGCGGRPAPPR 120
++RP LRGA + G+ RG P G SPG A G G G P PP
Sbjct: 385 SSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAG-----SPGLPGSPGPPGPPG 439
Query: 119 ---LRTGPRGGCG 90
R GP G G
Sbjct: 440 DIVFRKGPPGDHG 452
Score = 28.9 bits (63), Expect = 8.0
Identities = 23/71 (32%), Positives = 27/71 (37%), Gaps = 8/71 (11%)
Frame = -2
Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPA--------PP 123
P L G G + RG P P PG+ RC G RG G P
Sbjct: 773 PGLPGLPGTPGNEGLDGPRGDPGQP-GPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGR 831
Query: 122 RLRTGPRGGCG 90
R +TGP+G G
Sbjct: 832 RGKTGPKGDPG 842
>gi|10835113|ref|NP_000082.1| (NM_000091) alpha 3 type IV collagen
isoform 1, precursor; Goodpasture antigen; collagen IV,
alpha-3 polypeptide [Homo sapiens]
Length = 1670
Score = 33.1 bits (74), Expect = 0.42
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -2
Query: 215 PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRG 99
PAGP PG + GT+G G P PP GPRG
Sbjct: 609 PAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPG-EAGPRG 646
Score = 32.3 bits (72), Expect = 0.72
Identities = 26/73 (35%), Positives = 30/73 (40%), Gaps = 7/73 (9%)
Frame = -2
Query: 287 AARPALRGAARYGERAGTNLRRGAPA----GPRASPGKAAGAQRCEAGTRGCGGRPAPPR 120
++RP LRGA + G+ RG P G SPG A G G G P PP
Sbjct: 385 SSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAG-----SPGLPGSPGPPGPPG 439
Query: 119 ---LRTGPRGGCG 90
R GP G G
Sbjct: 440 DIVFRKGPPGDHG 452
Score = 28.9 bits (63), Expect = 8.0
Identities = 23/71 (32%), Positives = 27/71 (37%), Gaps = 8/71 (11%)
Frame = -2
Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPA--------PP 123
P L G G + RG P P PG+ RC G RG G P
Sbjct: 773 PGLPGLPGTPGNEGLDGPRGDPGQP-GPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGR 831
Query: 122 RLRTGPRGGCG 90
R +TGP+G G
Sbjct: 832 RGKTGPKGDPG 842
>gi|14165442|ref|NP_112730.1| (NM_031362) alpha 3 type IV collagen
isoform 2, precursor; Goodpasture antigen; collagen IV,
alpha-3 polypeptide [Homo sapiens]
Length = 1642
Score = 33.1 bits (74), Expect = 0.42
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -2
Query: 215 PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRG 99
PAGP PG + GT+G G P PP GPRG
Sbjct: 609 PAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPG-EAGPRG 646
Score = 32.3 bits (72), Expect = 0.72
Identities = 26/73 (35%), Positives = 30/73 (40%), Gaps = 7/73 (9%)
Frame = -2
Query: 287 AARPALRGAARYGERAGTNLRRGAPA----GPRASPGKAAGAQRCEAGTRGCGGRPAPPR 120
++RP LRGA + G+ RG P G SPG A G G G P PP
Sbjct: 385 SSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAG-----SPGLPGSPGPPGPPG 439
Query: 119 ---LRTGPRGGCG 90
R GP G G
Sbjct: 440 DIVFRKGPPGDHG 452
Score = 28.9 bits (63), Expect = 8.0
Identities = 23/71 (32%), Positives = 27/71 (37%), Gaps = 8/71 (11%)
Frame = -2
Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPA--------PP 123
P L G G + RG P P PG+ RC G RG G P
Sbjct: 773 PGLPGLPGTPGNEGLDGPRGDPGQP-GPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGR 831
Query: 122 RLRTGPRGGCG 90
R +TGP+G G
Sbjct: 832 RGKTGPKGDPG 842
>gi|14165450|ref|NP_112734.1| (NM_031366) alpha 3 type IV collagen
isoform 5, precursor; Goodpasture antigen; collagen IV,
alpha-3 polypeptide [Homo sapiens]
Length = 1424
Score = 33.1 bits (74), Expect = 0.42
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -2
Query: 215 PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRG 99
PAGP PG + GT+G G P PP GPRG
Sbjct: 609 PAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPG-EAGPRG 646
Score = 32.3 bits (72), Expect = 0.72
Identities = 26/73 (35%), Positives = 30/73 (40%), Gaps = 7/73 (9%)
Frame = -2
Query: 287 AARPALRGAARYGERAGTNLRRGAPA----GPRASPGKAAGAQRCEAGTRGCGGRPAPPR 120
++RP LRGA + G+ RG P G SPG A G G G P PP
Sbjct: 385 SSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAG-----SPGLPGSPGPPGPPG 439
Query: 119 ---LRTGPRGGCG 90
R GP G G
Sbjct: 440 DIVFRKGPPGDHG 452
Score = 28.9 bits (63), Expect = 8.0
Identities = 23/71 (32%), Positives = 27/71 (37%), Gaps = 8/71 (11%)
Frame = -2
Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPA--------PP 123
P L G G + RG P P PG+ RC G RG G P
Sbjct: 773 PGLPGLPGTPGNEGLDGPRGDPGQP-GPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGR 831
Query: 122 RLRTGPRGGCG 90
R +TGP+G G
Sbjct: 832 RGKTGPKGDPG 842
>gi|8051588|ref|NP_056653.1| (NM_015838) ficolin 2 isoform c
precursor; ficolin (collagen/fibrinogen
domain-containing lectin) 2; ficolin
(collagen/fibrinogen domain-containing lectin) 2
(hucolin); hucolin [Homo sapiens]
Length = 182
Score = 33.1 bits (74), Expect = 0.42
Identities = 25/59 (42%), Positives = 26/59 (43%)
Frame = -2
Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPR 102
P L GA AGTN +RG GP PGKA G G G P P TGPR
Sbjct: 53 PGLPGAPGDKGEAGTNGKRG-ERGPPGPPGKAG-----PPGPNGAPGEPQP--CLTGPR 103
>gi|4758348|ref|NP_004099.1| (NM_004108) ficolin 2 isoform a
precursor; ficolin (collagen/fibrinogen
domain-containing lectin) 2; ficolin
(collagen/fibrinogen domain-containing lectin) 2
(hucolin); hucolin [Homo sapiens]
Length = 313
Score = 33.1 bits (74), Expect = 0.42
Identities = 25/59 (42%), Positives = 26/59 (43%)
Frame = -2
Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPR 102
P L GA AGTN +RG GP PGKA G G G P P TGPR
Sbjct: 53 PGLPGAPGDKGEAGTNGKRG-ERGPPGPPGKAG-----PPGPNGAPGEPQP--CLTGPR 103
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 10,046,356
Number of sequences in database: 19,244
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28621523
Number of Sequences: 19244
Number of extensions: 811517
Number of successful extensions: 4840
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 2025
Number of HSP's successfully gapped in prelim test: 189
Number of HSP's that attempted gapping in prelim test: 1062
Number of HSP's gapped (non-prelim): 3914
length of query: 436
length of database: 10,046,356
effective HSP length: 47
effective length of query: 388
effective length of database: 9,141,888
effective search space: 3547052544
effective search space used: 3547052544
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search to RefSeq (Mouse) database
Query= 20030531C-001577 (20030531C-001577) 20030531C-001577
(1308 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
15,330 sequences; 7,155,815 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|19526936|ref|NP_598498.1| (NM_133737) RIKEN cDNA 1700003F10 ... 544 e-155
Alignment gi|21489937|ref|NP_067270.1| (NM_021295) LanC (bacterial lantib... 310 1e-84
Alignment gi|27734148|ref|NP_775590.1| (NM_173414) RIKEN cDNA 6030463G20 ... 105 4e-23
Alignment gi|31543172|ref|NP_659162.2| (NM_144913) hypothetical protein M... 35 0.10
Alignment gi|6680972|ref|NP_031764.1| (NM_007738) procollagen, type VII, ... 33 0.39
Alignment gi|6678069|ref|NP_033259.1| (NM_009233) SRY (sex determining re... 32 0.51
Alignment gi|6678581|ref|NP_033541.1| (NM_009515) Wiskott-Aldrich syndrom... 32 0.51
Alignment gi|6680980|ref|NP_031769.1| (NM_007743) procollagen, type I, al... 32 0.67
Alignment gi|28565277|ref|NP_787948.1| (NM_175934) protein phosphatase I;... 32 0.67
Alignment gi|13242328|ref|NP_062640.1| (NM_019666) NS1-associated protein... 32 0.67
>gi|19526936|ref|NP_598498.1| (NM_133737) RIKEN cDNA 1700003F10 [Mus
musculus]
Length = 450
Score = 544 bits (1402), Expect = e-155
Identities = 270/345 (78%), Positives = 297/345 (85%), Gaps = 6/345 (1%)
Frame = +1
Query: 292 MGETISRRLWFQGDWDAEMEERAFPNPFPDYXXXXXXXXXXXXXXXXX------LTPEEL 453
MGET+S+RL F +AEMEER+FPNPFPDY T E+
Sbjct: 1 MGETMSKRLKFHLG-EAEMEERSFPNPFPDYEAAASAAGLAAGSAEETGRVCPLPTTEDP 59
Query: 454 GLPFHSDGKIIHNFTRRIQSKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRV 633
GLPFH +GKI+ NF +RIQ+KIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRV
Sbjct: 60 GLPFHPNGKIVPNFIKRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRV 119
Query: 634 TCDQNYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLL 813
T DQ YLLRSLDYVKRTLRNL+GRRVTFLCGDAGPLAVGAV+YHKLKS+ ESQECITKLL
Sbjct: 120 TGDQTYLLRSLDYVKRTLRNLSGRRVTFLCGDAGPLAVGAVIYHKLKSECESQECITKLL 179
Query: 814 QLQRTIVCRDSDLPDELLFGRAGYLYALLYVNTEMDPGAVCESAIKEVVDAIIVSGKTLS 993
Q+ RTIVC++S+LPDELL+GRAGYLYALLY+NTE+ PG V E+AIKEVV AII SGK+LS
Sbjct: 180 QMHRTIVCQESELPDELLYGRAGYLYALLYLNTEIGPGTVGETAIKEVVSAIIESGKSLS 239
Query: 994 KEERKAERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHK 1173
+EERK+ERCPLLYQWHRKQYVGAAHGMAGIYYMLMQP AKVDQETLTEMVKPSIDY+RHK
Sbjct: 240 REERKSERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPEAKVDQETLTEMVKPSIDYVRHK 299
Query: 1174 RFRSRNYPSSLSNETDRLVHWLHGAPGVIHTLMQAYKVVKEEKYL 1308
+FRS NYPSSLSNETDRLVHW HGAPGVIH L+QAY+V KEEKYL
Sbjct: 300 KFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLLQAYQVFKEEKYL 344
>gi|21489937|ref|NP_067270.1| (NM_021295) LanC (bacterial lantibiotic
synthetase component C)-like; G protein-coupled receptor
69; G protein-coupled receptor 69A; LanC-like protein 1
[Mus musculus]
Length = 399
Score = 310 bits (794), Expect = 1e-84
Identities = 152/321 (47%), Positives = 215/321 (66%)
Frame = +1
Query: 346 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 525
M +RAFPNP+ DY F S G++ F+ R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAENY------------------FDSTGRLTPEFSHRLTNKIRE 42
Query: 526 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 705
LLQQME GLK+ADP D + YTGW GIA+LYL L+ V D YL + YVK++L L+ R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLHNVFGDPAYLQMAHSYVKQSLNCLSRR 102
Query: 706 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 885
+TFLCGDAGPLAV AV+YHK+ S+ +++ECIT+L+ L + D +P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNSEKQAEECITRLIHLNKI----DPHVPNEMLYGRIGY 158
Query: 886 LYALLYVNTEMDPGAVCESAIKEVVDAIIVSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1065
++ALL+VN + +S I+++ + I+ SG+ LS++ A + PL+Y+W+++ YVGAA
Sbjct: 159 IFALLFVNKNFGEEKIPQSHIQQICENILTSGENLSRKRNLAAKSPLMYEWYQEYYVGAA 218
Query: 1066 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSRNYPSSLSNETDRLVHWLHG 1245
HG+AGIYY LMQP+ +V+Q L +VKPS+D++ +F S NYP L + D LVHW HG
Sbjct: 219 HGLAGIYYYLMQPSLQVNQGKLHSLVKPSVDFVCRLKFPSGNYPPCLDDTRDLLVHWCHG 278
Query: 1246 APGVIHTLMQAYKVVKEEKYL 1308
APGVI+ L+QAYKV KEE+YL
Sbjct: 279 APGVIYMLIQAYKVFKEERYL 299
>gi|27734148|ref|NP_775590.1| (NM_173414) RIKEN cDNA 6030463G20 [Mus
musculus]
Length = 420
Score = 105 bits (263), Expect = 4e-23
Identities = 71/208 (34%), Positives = 108/208 (51%), Gaps = 7/208 (3%)
Frame = +1
Query: 706 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDL----PDELLFG 873
R FL G AG AV +VYH L Q + K L VC DEL G
Sbjct: 117 RAAFLLGGAGVYAVATLVYHALGRPDYVQP-LGKFRAL--CAVCAPVSFLDCGSDELFVG 173
Query: 874 RAGYLYALLYVNTEMDPGAVCESAIKEVVDAIIVSGKTLSKEERKAERCPLLYQWHRKQY 1053
RAGYL A L + ++ + + IK + AI+ SGK + ++RK PL+Y ++ +Y
Sbjct: 174 RAGYLCAALVLKQKLAQEVLTPTQIKAICQAILDSGKQYALKKRKP--FPLMYSYYGTEY 231
Query: 1054 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSRNYPSSLSNETDR--- 1224
+GAAHG++ I ML+ + E+V+ S+D++ + ++ N+P L +R
Sbjct: 232 LGAAHGLSSILQMLLSYQEHLKPSD-RELVRQSVDFLMEQE-QNCNWPPELGETIERENE 289
Query: 1225 LVHWLHGAPGVIHTLMQAYKVVKEEKYL 1308
LVHW HGAPG+ + +AY + K+ +YL
Sbjct: 290 LVHWCHGAPGIAYLFAKAYLISKKPQYL 317
>gi|31543172|ref|NP_659162.2| (NM_144913) hypothetical protein
MGC28888 [Mus musculus]
Length = 665
Score = 34.7 bits (78), Expect = 0.10
Identities = 30/92 (32%), Positives = 35/92 (37%), Gaps = 5/92 (5%)
Frame = -2
Query: 347 ISASQSPWNQSLRDMVSPMSAARPALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQR 168
+ + Q + LRD R GAA G G P G A+P +R
Sbjct: 32 VQSHQEAASGELRDGTEHGPGPRAHSAGAAASGGGGPQAQAHGEPHGRAAAPADVGEERR 91
Query: 167 CEAGTRGCGGRPAPPRLRTG-----PRGGCGG 87
GT G PAPPR R G P GG GG
Sbjct: 92 GGGGTD--LGPPAPPRPRNGYQPHRPPGGGGG 121
>gi|6680972|ref|NP_031764.1| (NM_007738) procollagen, type VII, alpha
1 [Mus musculus]
Length = 2944
Score = 32.7 bits (73), Expect = 0.39
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Frame = -2
Query: 215 PAGPRASPGKAAGAQRCEAGTRGCGGRPAP---PRLR-----TGPRGGCG 90
P GP PG+ CE G G G+P P P LR TGP+G G
Sbjct: 1432 PQGPAGRPGEKGEKGDCEDGGPGLPGQPGPPGEPGLRGAPGMTGPKGDRG 1481
Score = 29.6 bits (65), Expect = 3.3
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = -2
Query: 209 GPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRGGCGG 87
G + +PG AGA E G +G G P PR G G GG
Sbjct: 2301 GEKGAPGDLAGALLGEPGAKGDRGLPG-PRGEKGEAGRAGG 2340
>gi|6678069|ref|NP_033259.1| (NM_009233) SRY (sex determining region
Y)-box 1 [Mus musculus]
Length = 391
Score = 32.3 bits (72), Expect = 0.51
Identities = 20/37 (54%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 23 PAGRSLLHRGDPATAAPGWQRSR-HSLPEGPSGAGAG 130
PAG GDPA AA +SR HSLP+ GAGAG
Sbjct: 349 PAGEG----GDPAAAAAAAAQSRLHSLPQHYQGAGAG 381
>gi|6678581|ref|NP_033541.1| (NM_009515) Wiskott-Aldrich syndrome
homolog; Wiskott-Aldrich syndrome protein [Mus musculus]
Length = 520
Score = 32.3 bits (72), Expect = 0.51
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 57 PQPRRPGGSDPATASPRARPEPGRGGAP 140
P P P G P +PR P PGRGG P
Sbjct: 358 PLPPVPMGGAPPPPTPRGPPPPGRGGPP 385
>gi|6680980|ref|NP_031769.1| (NM_007743) procollagen, type I, alpha
2; osteogenesis imperfecta [Mus musculus]
Length = 1373
Score = 32.0 bits (71), Expect = 0.67
Identities = 32/79 (40%), Positives = 34/79 (42%), Gaps = 16/79 (20%)
Frame = -2
Query: 278 PALRGAARY----GERAGTNLR-----------RGAPAGPRASPGKA-AGAQRCEAGTRG 147
P RGAA GE+ T LR RG P G +PG A A R EAG G
Sbjct: 648 PGERGAAGIPGGKGEKGETGLRGDTGNTGRDGARGIP-GAVGAPGPAGASGDRGEAGAAG 706
Query: 146 CGGRPAPPRLRTGPRGGCG 90
G PA PR G RG G
Sbjct: 707 PSG-PAGPRGSPGERGEVG 724
Score = 29.3 bits (64), Expect = 4.3
Identities = 25/69 (36%), Positives = 28/69 (40%)
Frame = -2
Query: 296 PMSAARPALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRL 117
P + P GA+ AG G PAGPR SPG +R E G PA P
Sbjct: 684 PGAVGAPGPAGASGDRGEAGAAGPSG-PAGPRGSPG-----ERGEVG-------PAGPNG 730
Query: 116 RTGPRGGCG 90
GP G G
Sbjct: 731 FAGPAGAAG 739
Score = 28.1 bits (61), Expect = 9.6
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = -3
Query: 142 EGAPPRPGSGRALGEAVAGSLPPGRRGCGVPSVEEAPAGRRRREDSV 2
+G P PG G+A A LP R G P PAG R + SV
Sbjct: 204 KGEPGAPGENGTPGQAGARGLPGERGRVGAP----GPAGARGSDGSV 246
>gi|28565277|ref|NP_787948.1| (NM_175934) protein phosphatase I;
HLA-C adjacent transcript 53 [Mus musculus]
Length = 874
Score = 32.0 bits (71), Expect = 0.67
Identities = 23/64 (35%), Positives = 26/64 (39%)
Frame = -2
Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRG 99
P RG + + G +R G G PG A G G RG G P PP G RG
Sbjct: 671 PPSRGGDPFWDGPGDPMRGGPMRG---GPGPAPGPYHRGRGGRG-GNEPPPPPPFRGARG 726
Query: 98 GCGG 87
G G
Sbjct: 727 GRSG 730
>gi|13242328|ref|NP_062640.1| (NM_019666) NS1-associated protein
1-like; RRM RNA binding protein GRY-RBP [Mus musculus]
Length = 625
Score = 32.0 bits (71), Expect = 0.67
Identities = 22/46 (47%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
Frame = -2
Query: 269 RGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGC-GGR 135
RGAA RAG + +RGAP R G GAQ+ G RG GGR
Sbjct: 515 RGAAPPRGRAGYS-QRGAPGSARGVRGARGGAQQRGRGVRGARGGR 559
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 7,155,815
Number of sequences in database: 15,330
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19903330
Number of Sequences: 15330
Number of extensions: 535916
Number of successful extensions: 3032
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 1680
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 2682
length of query: 436
length of database: 7,155,815
effective HSP length: 47
effective length of query: 388
effective length of database: 6,435,305
effective search space: 2496898340
effective search space used: 2496898340
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)