Animal-Genome cDNA Clone 20030531/20030531C-0/20030531C-001577


Query

>20030531C-001577 (20030531C-001577) 20030531C-001577
AGACGCTGTC CTCGCGGCGC CGCCGGCCGG CCGGAGCCTC CTCCACCGAG
GGGACCCCGC AACCGCGGCG CCCGGGTGGC AGCGATCCCG CCACAGCCTC
CCCGAGGGCC CGTCCGGAGC CGGGGCGGGG CGGGGCGCCC TCCGCAACCA
CGTGTGCCCG CCTCGCAGCG CTGCGCGCCC GCCGCCTTTC CCGGGCTCGC
CCGCGGCCCG GCCGGAGCGC CTCGCCGGAG GTTTGTCCCC GCTCGCTCGC
CGTAGCGCGC GGCCCCGCGG AGCGCAGGGC GCGCGGCCGA CATGGGCGAG
ACCATATCCC GGAGGCTCTG GTTCCAGGGG GACTGGGACG CGGAAATGGA
GGAGCGGGCG TTCCCCAACC CTTTCCCGGA CTACGAGGCC GCGGCCGCCG
TGCCGGCGGA GGAGCCGCCA TGTGCTCGCC CTGCGCTCAC CCCGGAGGAG
CTCGGCCTCC CTTTCCACAG CGACGGGAAG ATCATTCATA ATTTCACAAG
GCGGATCCAG AGCAAAATCA AAGATCTTCT ACAGCAGATG GAAGAAGGGC
TGAAGACAGC TGATCCGCAC GATTGCTCTG CTTACACGGG TTGGACAGGC
ATAGCCCTTT TGTACCTTCA ATTGTACCGG GTCACATGTG ACCAGAACTA
TCTGCTCCGA TCCCTGGATT ACGTAAAAAG AACACTTCGG AATCTGAACG
GCCGGAGGGT CACTTTCCTC TGTGGAGATG CCGGGCCCCT GGCCGTCGGA
GCTGTGGTGT ATCACAAACT CAAAAGTGAT GGCGAGTCCC AGGAATGCAT
CACAAAACTC CTGCAGCTCC AGAGAACCAT CGTCTGCCGC GACTCGGACC
TTCCCGATGA GCTGCTTTTC GGCCGCGCGG GCTACCTGTA CGCCTTGCTC
TATGTGAACA CGGAGATGGA TCCGGGCGCC GTGTGCGAAT CAGCCATCAA
AGAGGTGGTC GATGCTATTA TTGTTTCGGG CAAGACTTTG TCAAAGGAAG
AAAGGAAGGC CGAGCGCTGC CCCCTGTTGT ACCAGTGGCA CAGGAAGCAG
TACGTCGGAG CCGCCCATGG CATGGCTGGG ATCTACTACA TGCTAATGCA
GCCAGCAGCA AAAGTGGACC AAGAAACCTT GACAGAGATG GTGAAGCCTA
GTATTGACTA CATGCGCCAC AAAAGGTTCC GATCCCGGAA CTACCCATCC
TCGTTAAGCA ACGAGACAGA CCGCCTGGTA CACTGGTTGC ACGGGGCGCC
CGGCGTCATC CACACGCTCA TGCAGGCGTA CAAGGTGGTT AAGGAGGAGA
AGTACCTG

Search to RefSeq (Human) database

Query= 20030531C-001577 (20030531C-001577) 20030531C-001577
         (1308 letters)

Database: RefSeq (Homo Sapiens/Amino Acid)
           19,244 sequences; 10,046,356 total letters

Searching..................................................done

                                                                               Score     E
            Sequences producing significant alignments:                        (bits)  Value

Alignment   gi|8923911|ref|NP_061167.1| (NM_018697) LanC lantibiotic synthe...   572  e-163
Alignment   gi|5174445|ref|NP_006046.1| (NM_006055) lanthionine synthetase ...   305  3e-83
Alignment   gi|4502951|ref|NP_000081.1| (NM_000090) alpha 1 type III collag...    33  0.32
Alignment   gi|14165448|ref|NP_112733.1| (NM_031365) alpha 3 type IV collag...    33  0.42
Alignment   gi|14165446|ref|NP_112732.1| (NM_031364) alpha 3 type IV collag...    33  0.42
Alignment   gi|10835113|ref|NP_000082.1| (NM_000091) alpha 3 type IV collag...    33  0.42
Alignment   gi|14165442|ref|NP_112730.1| (NM_031362) alpha 3 type IV collag...    33  0.42
Alignment   gi|14165450|ref|NP_112734.1| (NM_031366) alpha 3 type IV collag...    33  0.42
Alignment   gi|8051588|ref|NP_056653.1| (NM_015838) ficolin 2 isoform c pre...    33  0.42
Alignment   gi|4758348|ref|NP_004099.1| (NM_004108) ficolin 2 isoform a pre...    33  0.42


>gi|8923911|ref|NP_061167.1| (NM_018697) LanC lantibiotic synthetase
            component C-like 2; testis-specific adriamycin
            sensitivity protein; LanC (bacterial lantibiotic
            synthetase component C)-like 2; G protein-coupled
            receptor 69B [Homo sapiens]
          Length = 450

 Score =  572 bits (1474), Expect = e-163
 Identities = 281/344 (81%), Positives = 300/344 (86%), Gaps = 5/344 (1%)
 Frame = +1

Query: 292  MGETISRRLWFQGDWDAEMEERAFPNPFPDYXXXXXXXXXXXXXXXXXL-----TPEELG 456
            MGET+S+RL      +AEMEERAF NPFPDY                       T +E G
Sbjct: 1    MGETMSKRLKLHLGGEAEMEERAFVNPFPDYEAAAGALLASGAAEETGCVRPPATTDEPG 60

Query: 457  LPFHSDGKIIHNFTRRIQSKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVT 636
            LPFH DGKIIHNF RRIQ+KIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVT
Sbjct: 61   LPFHQDGKIIHNFIRRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVT 120

Query: 637  CDQNYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQ 816
            CDQ YLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAV+YHKL+SD ESQEC+TKLLQ
Sbjct: 121  CDQTYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVIYHKLRSDCESQECVTKLLQ 180

Query: 817  LQRTIVCRDSDLPDELLFGRAGYLYALLYVNTEMDPGAVCESAIKEVVDAIIVSGKTLSK 996
            LQR++VC++SDLPDELL+GRAGYLYALLY+NTE+ PG VCESAIKEVV+AII SGKTLS+
Sbjct: 181  LQRSVVCQESDLPDELLYGRAGYLYALLYLNTEIGPGTVCESAIKEVVNAIIESGKTLSR 240

Query: 997  EERKAERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKR 1176
            EERK ERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDY+RHK+
Sbjct: 241  EERKTERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYVRHKK 300

Query: 1177 FRSRNYPSSLSNETDRLVHWLHGAPGVIHTLMQAYKVVKEEKYL 1308
            FRS NYPSSLSNETDRLVHW HGAPGVIH LMQAYKV KEEKYL
Sbjct: 301  FRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYL 344



>gi|5174445|ref|NP_006046.1| (NM_006055) lanthionine synthetase C-like
            protein 1; G protein-coupled receptor 69A; LanC
            (bacterial lantibiotic synthetase component C)-like 1;
            LanC (bacterial lantibiotic synthetase component) [Homo
            sapiens]
          Length = 399

 Score =  305 bits (782), Expect = 3e-83
 Identities = 149/321 (46%), Positives = 212/321 (65%)
 Frame = +1

Query: 346  MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 525
            M +RAFPNP+ DY                          F + G++   F++R+ +KI++
Sbjct: 1    MAQRAFPNPYADYNKSLAEGY------------------FDAAGRLTPEFSQRLTNKIRE 42

Query: 526  LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 705
            LLQQME GLK+ADP D + YTGW GIA+LYL LY V  D  YL  +  YVK++L  L  R
Sbjct: 43   LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKR 102

Query: 706  RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 885
             +TFLCGDAGPLAV AV+YHK+ ++ ++++CIT+L+ L +     D   P+E+L+GR GY
Sbjct: 103  SITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKI----DPHAPNEMLYGRIGY 158

Query: 886  LYALLYVNTEMDPGAVCESAIKEVVDAIIVSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1065
            +YALL+VN       + +S I+++ + I+ SG+ L+++     + PL+Y+W+++ YVGAA
Sbjct: 159  IYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAA 218

Query: 1066 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSRNYPSSLSNETDRLVHWLHG 1245
            HG+AGIYY LMQP+ +V Q  L  +VKPS+DY+   +F S NYP  + +  D LVHW HG
Sbjct: 219  HGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHG 278

Query: 1246 APGVIHTLMQAYKVVKEEKYL 1308
            APGVI+ L+QAYKV +EEKYL
Sbjct: 279  APGVIYMLIQAYKVFREEKYL 299



>gi|4502951|ref|NP_000081.1| (NM_000090) alpha 1 type III collagen;
           Collagen III, alpha-1 polypeptide; collagen, fetal [Homo
           sapiens]
          Length = 1466

 Score = 33.5 bits (75), Expect = 0.32
 Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
 Frame = -2

Query: 215 PAGPRASPGK--------AAGAQRCEAGTRGCGGRPAPPRLRTGPRGGCG 90
           P GPR +PG+        AAGA R   G RG  G+P PP    GP G  G
Sbjct: 298 PMGPRGAPGERGRPGLPGAAGA-RGNDGARGSDGQPGPP----GPPGTAG 342


 Score = 32.3 bits (72), Expect = 0.72
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = -2

Query: 242 AGTNLRRGAPAGP--RASPGKAAG----AQRCEAGTRGCGGRPAPPRLRTGPRGGCG 90
           AG   R G P GP  R  PG   G     +    G++G  GRP PP   +GPRG  G
Sbjct: 521 AGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPG-PSGPRGQPG 576


 Score = 31.2 bits (69), Expect = 1.6
 Identities = 17/46 (36%), Positives = 22/46 (46%)
 Frame = -2

Query: 215  PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRGGCGGIAA 78
            P GPR + G     +R   G+ G  G+P PP     P   CGG+ A
Sbjct: 1162 PPGPRGNRG-----ERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGA 1202


 Score = 28.9 bits (63), Expect = 8.0
 Identities = 24/69 (34%), Positives = 26/69 (36%)
 Frame = -2

Query: 296  PMSAARPALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRL 117
            P  A  P   G A      G    RG+P GP A+    A   R   G  G  G P PP
Sbjct: 839  PGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGA---RGLPGPPGSNGNPGPP-- 893

Query: 116  RTGPRGGCG 90
              GP G  G
Sbjct: 894  --GPSGSPG 900



>gi|14165448|ref|NP_112733.1| (NM_031365) alpha 3 type IV collagen
           isoform 4, precursor; Goodpasture antigen; collagen IV,
           alpha-3 polypeptide [Homo sapiens]
          Length = 1494

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 17/39 (43%), Positives = 19/39 (48%)
 Frame = -2

Query: 215 PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRG 99
           PAGP   PG     +    GT+G  G P PP    GPRG
Sbjct: 609 PAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPG-EAGPRG 646


 Score = 32.3 bits (72), Expect = 0.72
 Identities = 26/73 (35%), Positives = 30/73 (40%), Gaps = 7/73 (9%)
 Frame = -2

Query: 287 AARPALRGAARYGERAGTNLRRGAPA----GPRASPGKAAGAQRCEAGTRGCGGRPAPPR 120
           ++RP LRGA  +    G+   RG P     G   SPG A        G  G  G P PP
Sbjct: 385 SSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAG-----SPGLPGSPGPPGPPG 439

Query: 119 ---LRTGPRGGCG 90
               R GP G  G
Sbjct: 440 DIVFRKGPPGDHG 452


 Score = 28.9 bits (63), Expect = 8.0
 Identities = 23/71 (32%), Positives = 27/71 (37%), Gaps = 8/71 (11%)
 Frame = -2

Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPA--------PP 123
           P L G        G +  RG P  P   PG+     RC  G RG  G P
Sbjct: 773 PGLPGLPGTPGNEGLDGPRGDPGQP-GPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGR 831

Query: 122 RLRTGPRGGCG 90
           R +TGP+G  G
Sbjct: 832 RGKTGPKGDPG 842



>gi|14165446|ref|NP_112732.1| (NM_031364) alpha 3 type IV collagen
           isoform 3, precursor; Goodpasture antigen; collagen IV,
           alpha-3 polypeptide [Homo sapiens]
          Length = 1498

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 17/39 (43%), Positives = 19/39 (48%)
 Frame = -2

Query: 215 PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRG 99
           PAGP   PG     +    GT+G  G P PP    GPRG
Sbjct: 609 PAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPG-EAGPRG 646


 Score = 32.3 bits (72), Expect = 0.72
 Identities = 26/73 (35%), Positives = 30/73 (40%), Gaps = 7/73 (9%)
 Frame = -2

Query: 287 AARPALRGAARYGERAGTNLRRGAPA----GPRASPGKAAGAQRCEAGTRGCGGRPAPPR 120
           ++RP LRGA  +    G+   RG P     G   SPG A        G  G  G P PP
Sbjct: 385 SSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAG-----SPGLPGSPGPPGPPG 439

Query: 119 ---LRTGPRGGCG 90
               R GP G  G
Sbjct: 440 DIVFRKGPPGDHG 452


 Score = 28.9 bits (63), Expect = 8.0
 Identities = 23/71 (32%), Positives = 27/71 (37%), Gaps = 8/71 (11%)
 Frame = -2

Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPA--------PP 123
           P L G        G +  RG P  P   PG+     RC  G RG  G P
Sbjct: 773 PGLPGLPGTPGNEGLDGPRGDPGQP-GPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGR 831

Query: 122 RLRTGPRGGCG 90
           R +TGP+G  G
Sbjct: 832 RGKTGPKGDPG 842



>gi|10835113|ref|NP_000082.1| (NM_000091) alpha 3 type IV collagen
           isoform 1, precursor; Goodpasture antigen; collagen IV,
           alpha-3 polypeptide [Homo sapiens]
          Length = 1670

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 17/39 (43%), Positives = 19/39 (48%)
 Frame = -2

Query: 215 PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRG 99
           PAGP   PG     +    GT+G  G P PP    GPRG
Sbjct: 609 PAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPG-EAGPRG 646


 Score = 32.3 bits (72), Expect = 0.72
 Identities = 26/73 (35%), Positives = 30/73 (40%), Gaps = 7/73 (9%)
 Frame = -2

Query: 287 AARPALRGAARYGERAGTNLRRGAPA----GPRASPGKAAGAQRCEAGTRGCGGRPAPPR 120
           ++RP LRGA  +    G+   RG P     G   SPG A        G  G  G P PP
Sbjct: 385 SSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAG-----SPGLPGSPGPPGPPG 439

Query: 119 ---LRTGPRGGCG 90
               R GP G  G
Sbjct: 440 DIVFRKGPPGDHG 452


 Score = 28.9 bits (63), Expect = 8.0
 Identities = 23/71 (32%), Positives = 27/71 (37%), Gaps = 8/71 (11%)
 Frame = -2

Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPA--------PP 123
           P L G        G +  RG P  P   PG+     RC  G RG  G P
Sbjct: 773 PGLPGLPGTPGNEGLDGPRGDPGQP-GPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGR 831

Query: 122 RLRTGPRGGCG 90
           R +TGP+G  G
Sbjct: 832 RGKTGPKGDPG 842



>gi|14165442|ref|NP_112730.1| (NM_031362) alpha 3 type IV collagen
           isoform 2, precursor; Goodpasture antigen; collagen IV,
           alpha-3 polypeptide [Homo sapiens]
          Length = 1642

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 17/39 (43%), Positives = 19/39 (48%)
 Frame = -2

Query: 215 PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRG 99
           PAGP   PG     +    GT+G  G P PP    GPRG
Sbjct: 609 PAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPG-EAGPRG 646


 Score = 32.3 bits (72), Expect = 0.72
 Identities = 26/73 (35%), Positives = 30/73 (40%), Gaps = 7/73 (9%)
 Frame = -2

Query: 287 AARPALRGAARYGERAGTNLRRGAPA----GPRASPGKAAGAQRCEAGTRGCGGRPAPPR 120
           ++RP LRGA  +    G+   RG P     G   SPG A        G  G  G P PP
Sbjct: 385 SSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAG-----SPGLPGSPGPPGPPG 439

Query: 119 ---LRTGPRGGCG 90
               R GP G  G
Sbjct: 440 DIVFRKGPPGDHG 452


 Score = 28.9 bits (63), Expect = 8.0
 Identities = 23/71 (32%), Positives = 27/71 (37%), Gaps = 8/71 (11%)
 Frame = -2

Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPA--------PP 123
           P L G        G +  RG P  P   PG+     RC  G RG  G P
Sbjct: 773 PGLPGLPGTPGNEGLDGPRGDPGQP-GPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGR 831

Query: 122 RLRTGPRGGCG 90
           R +TGP+G  G
Sbjct: 832 RGKTGPKGDPG 842



>gi|14165450|ref|NP_112734.1| (NM_031366) alpha 3 type IV collagen
           isoform 5, precursor; Goodpasture antigen; collagen IV,
           alpha-3 polypeptide [Homo sapiens]
          Length = 1424

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 17/39 (43%), Positives = 19/39 (48%)
 Frame = -2

Query: 215 PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRG 99
           PAGP   PG     +    GT+G  G P PP    GPRG
Sbjct: 609 PAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPG-EAGPRG 646


 Score = 32.3 bits (72), Expect = 0.72
 Identities = 26/73 (35%), Positives = 30/73 (40%), Gaps = 7/73 (9%)
 Frame = -2

Query: 287 AARPALRGAARYGERAGTNLRRGAPA----GPRASPGKAAGAQRCEAGTRGCGGRPAPPR 120
           ++RP LRGA  +    G+   RG P     G   SPG A        G  G  G P PP
Sbjct: 385 SSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAG-----SPGLPGSPGPPGPPG 439

Query: 119 ---LRTGPRGGCG 90
               R GP G  G
Sbjct: 440 DIVFRKGPPGDHG 452


 Score = 28.9 bits (63), Expect = 8.0
 Identities = 23/71 (32%), Positives = 27/71 (37%), Gaps = 8/71 (11%)
 Frame = -2

Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPA--------PP 123
           P L G        G +  RG P  P   PG+     RC  G RG  G P
Sbjct: 773 PGLPGLPGTPGNEGLDGPRGDPGQP-GPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGR 831

Query: 122 RLRTGPRGGCG 90
           R +TGP+G  G
Sbjct: 832 RGKTGPKGDPG 842



>gi|8051588|ref|NP_056653.1| (NM_015838) ficolin 2 isoform c
           precursor; ficolin (collagen/fibrinogen
           domain-containing lectin) 2; ficolin
           (collagen/fibrinogen domain-containing lectin) 2
           (hucolin); hucolin [Homo sapiens]
          Length = 182

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 25/59 (42%), Positives = 26/59 (43%)
 Frame = -2

Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPR 102
           P L GA      AGTN +RG   GP   PGKA        G  G  G P P    TGPR
Sbjct: 53  PGLPGAPGDKGEAGTNGKRG-ERGPPGPPGKAG-----PPGPNGAPGEPQP--CLTGPR 103



>gi|4758348|ref|NP_004099.1| (NM_004108) ficolin 2 isoform a
           precursor; ficolin (collagen/fibrinogen
           domain-containing lectin) 2; ficolin
           (collagen/fibrinogen domain-containing lectin) 2
           (hucolin); hucolin [Homo sapiens]
          Length = 313

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 25/59 (42%), Positives = 26/59 (43%)
 Frame = -2

Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPR 102
           P L GA      AGTN +RG   GP   PGKA        G  G  G P P    TGPR
Sbjct: 53  PGLPGAPGDKGEAGTNGKRG-ERGPPGPPGKAG-----PPGPNGAPGEPQP--CLTGPR 103


  Database: RefSeq (Homo Sapiens/Amino Acid)
    Posted date:  Jul 1, 2003  6:07 AM
  Number of letters in database: 10,046,356
  Number of sequences in database:  19,244

Lambda     K      H
   0.318    0.135    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28621523
Number of Sequences: 19244
Number of extensions: 811517
Number of successful extensions: 4840
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 2025
Number of HSP's successfully gapped in prelim test: 189
Number of HSP's that attempted gapping in prelim test: 1062
Number of HSP's gapped (non-prelim): 3914
length of query: 436
length of database: 10,046,356
effective HSP length: 47
effective length of query: 388
effective length of database: 9,141,888
effective search space: 3547052544
effective search space used: 3547052544
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)

Search to RefSeq (Mouse) database

Query= 20030531C-001577 (20030531C-001577) 20030531C-001577
         (1308 letters)

Database: RefSeq (Mus Musculus/Amino Acid)
           15,330 sequences; 7,155,815 total letters

Searching..................................................done

                                                                               Score     E
            Sequences producing significant alignments:                        (bits)  Value

Alignment   gi|19526936|ref|NP_598498.1| (NM_133737) RIKEN cDNA 1700003F10 ...   544  e-155
Alignment   gi|21489937|ref|NP_067270.1| (NM_021295) LanC (bacterial lantib...   310  1e-84
Alignment   gi|27734148|ref|NP_775590.1| (NM_173414) RIKEN cDNA 6030463G20 ...   105  4e-23
Alignment   gi|31543172|ref|NP_659162.2| (NM_144913) hypothetical protein M...    35  0.10
Alignment   gi|6680972|ref|NP_031764.1| (NM_007738) procollagen, type VII, ...    33  0.39
Alignment   gi|6678069|ref|NP_033259.1| (NM_009233) SRY (sex determining re...    32  0.51
Alignment   gi|6678581|ref|NP_033541.1| (NM_009515) Wiskott-Aldrich syndrom...    32  0.51
Alignment   gi|6680980|ref|NP_031769.1| (NM_007743) procollagen, type I, al...    32  0.67
Alignment   gi|28565277|ref|NP_787948.1| (NM_175934) protein phosphatase I;...    32  0.67
Alignment   gi|13242328|ref|NP_062640.1| (NM_019666) NS1-associated protein...    32  0.67


>gi|19526936|ref|NP_598498.1| (NM_133737) RIKEN cDNA 1700003F10 [Mus
            musculus]
          Length = 450

 Score =  544 bits (1402), Expect = e-155
 Identities = 270/345 (78%), Positives = 297/345 (85%), Gaps = 6/345 (1%)
 Frame = +1

Query: 292  MGETISRRLWFQGDWDAEMEERAFPNPFPDYXXXXXXXXXXXXXXXXX------LTPEEL 453
            MGET+S+RL F    +AEMEER+FPNPFPDY                        T E+
Sbjct: 1    MGETMSKRLKFHLG-EAEMEERSFPNPFPDYEAAASAAGLAAGSAEETGRVCPLPTTEDP 59

Query: 454  GLPFHSDGKIIHNFTRRIQSKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRV 633
            GLPFH +GKI+ NF +RIQ+KIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRV
Sbjct: 60   GLPFHPNGKIVPNFIKRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRV 119

Query: 634  TCDQNYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLL 813
            T DQ YLLRSLDYVKRTLRNL+GRRVTFLCGDAGPLAVGAV+YHKLKS+ ESQECITKLL
Sbjct: 120  TGDQTYLLRSLDYVKRTLRNLSGRRVTFLCGDAGPLAVGAVIYHKLKSECESQECITKLL 179

Query: 814  QLQRTIVCRDSDLPDELLFGRAGYLYALLYVNTEMDPGAVCESAIKEVVDAIIVSGKTLS 993
            Q+ RTIVC++S+LPDELL+GRAGYLYALLY+NTE+ PG V E+AIKEVV AII SGK+LS
Sbjct: 180  QMHRTIVCQESELPDELLYGRAGYLYALLYLNTEIGPGTVGETAIKEVVSAIIESGKSLS 239

Query: 994  KEERKAERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHK 1173
            +EERK+ERCPLLYQWHRKQYVGAAHGMAGIYYMLMQP AKVDQETLTEMVKPSIDY+RHK
Sbjct: 240  REERKSERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPEAKVDQETLTEMVKPSIDYVRHK 299

Query: 1174 RFRSRNYPSSLSNETDRLVHWLHGAPGVIHTLMQAYKVVKEEKYL 1308
            +FRS NYPSSLSNETDRLVHW HGAPGVIH L+QAY+V KEEKYL
Sbjct: 300  KFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLLQAYQVFKEEKYL 344



>gi|21489937|ref|NP_067270.1| (NM_021295) LanC (bacterial lantibiotic
            synthetase component C)-like; G protein-coupled receptor
            69; G protein-coupled receptor 69A; LanC-like protein 1
            [Mus musculus]
          Length = 399

 Score =  310 bits (794), Expect = 1e-84
 Identities = 152/321 (47%), Positives = 215/321 (66%)
 Frame = +1

Query: 346  MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 525
            M +RAFPNP+ DY                          F S G++   F+ R+ +KI++
Sbjct: 1    MAQRAFPNPYADYNKSLAENY------------------FDSTGRLTPEFSHRLTNKIRE 42

Query: 526  LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 705
            LLQQME GLK+ADP D + YTGW GIA+LYL L+ V  D  YL  +  YVK++L  L+ R
Sbjct: 43   LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLHNVFGDPAYLQMAHSYVKQSLNCLSRR 102

Query: 706  RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 885
             +TFLCGDAGPLAV AV+YHK+ S+ +++ECIT+L+ L +     D  +P+E+L+GR GY
Sbjct: 103  SITFLCGDAGPLAVAAVLYHKMNSEKQAEECITRLIHLNKI----DPHVPNEMLYGRIGY 158

Query: 886  LYALLYVNTEMDPGAVCESAIKEVVDAIIVSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1065
            ++ALL+VN       + +S I+++ + I+ SG+ LS++   A + PL+Y+W+++ YVGAA
Sbjct: 159  IFALLFVNKNFGEEKIPQSHIQQICENILTSGENLSRKRNLAAKSPLMYEWYQEYYVGAA 218

Query: 1066 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSRNYPSSLSNETDRLVHWLHG 1245
            HG+AGIYY LMQP+ +V+Q  L  +VKPS+D++   +F S NYP  L +  D LVHW HG
Sbjct: 219  HGLAGIYYYLMQPSLQVNQGKLHSLVKPSVDFVCRLKFPSGNYPPCLDDTRDLLVHWCHG 278

Query: 1246 APGVIHTLMQAYKVVKEEKYL 1308
            APGVI+ L+QAYKV KEE+YL
Sbjct: 279  APGVIYMLIQAYKVFKEERYL 299



>gi|27734148|ref|NP_775590.1| (NM_173414) RIKEN cDNA 6030463G20 [Mus
            musculus]
          Length = 420

 Score =  105 bits (263), Expect = 4e-23
 Identities = 71/208 (34%), Positives = 108/208 (51%), Gaps = 7/208 (3%)
 Frame = +1

Query: 706  RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDL----PDELLFG 873
            R  FL G AG  AV  +VYH L      Q  + K   L    VC          DEL  G
Sbjct: 117  RAAFLLGGAGVYAVATLVYHALGRPDYVQP-LGKFRAL--CAVCAPVSFLDCGSDELFVG 173

Query: 874  RAGYLYALLYVNTEMDPGAVCESAIKEVVDAIIVSGKTLSKEERKAERCPLLYQWHRKQY 1053
            RAGYL A L +  ++    +  + IK +  AI+ SGK  + ++RK    PL+Y ++  +Y
Sbjct: 174  RAGYLCAALVLKQKLAQEVLTPTQIKAICQAILDSGKQYALKKRKP--FPLMYSYYGTEY 231

Query: 1054 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSRNYPSSLSNETDR--- 1224
            +GAAHG++ I  ML+     +      E+V+ S+D++  +  ++ N+P  L    +R
Sbjct: 232  LGAAHGLSSILQMLLSYQEHLKPSD-RELVRQSVDFLMEQE-QNCNWPPELGETIERENE 289

Query: 1225 LVHWLHGAPGVIHTLMQAYKVVKEEKYL 1308
            LVHW HGAPG+ +   +AY + K+ +YL
Sbjct: 290  LVHWCHGAPGIAYLFAKAYLISKKPQYL 317



>gi|31543172|ref|NP_659162.2| (NM_144913) hypothetical protein
           MGC28888 [Mus musculus]
          Length = 665

 Score = 34.7 bits (78), Expect = 0.10
 Identities = 30/92 (32%), Positives = 35/92 (37%), Gaps = 5/92 (5%)
 Frame = -2

Query: 347 ISASQSPWNQSLRDMVSPMSAARPALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQR 168
           + + Q   +  LRD        R    GAA  G         G P G  A+P      +R
Sbjct: 32  VQSHQEAASGELRDGTEHGPGPRAHSAGAAASGGGGPQAQAHGEPHGRAAAPADVGEERR 91

Query: 167 CEAGTRGCGGRPAPPRLRTG-----PRGGCGG 87
              GT    G PAPPR R G     P GG GG
Sbjct: 92  GGGGTD--LGPPAPPRPRNGYQPHRPPGGGGG 121



>gi|6680972|ref|NP_031764.1| (NM_007738) procollagen, type VII, alpha
            1 [Mus musculus]
          Length = 2944

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
 Frame = -2

Query: 215  PAGPRASPGKAAGAQRCEAGTRGCGGRPAP---PRLR-----TGPRGGCG 90
            P GP   PG+      CE G  G  G+P P   P LR     TGP+G  G
Sbjct: 1432 PQGPAGRPGEKGEKGDCEDGGPGLPGQPGPPGEPGLRGAPGMTGPKGDRG 1481


 Score = 29.6 bits (65), Expect = 3.3
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -2

Query: 209  GPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRGGCGG 87
            G + +PG  AGA   E G +G  G P  PR   G  G  GG
Sbjct: 2301 GEKGAPGDLAGALLGEPGAKGDRGLPG-PRGEKGEAGRAGG 2340



>gi|6678069|ref|NP_033259.1| (NM_009233) SRY (sex determining region
           Y)-box 1 [Mus musculus]
          Length = 391

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 20/37 (54%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 23  PAGRSLLHRGDPATAAPGWQRSR-HSLPEGPSGAGAG 130
           PAG      GDPA AA    +SR HSLP+   GAGAG
Sbjct: 349 PAGEG----GDPAAAAAAAAQSRLHSLPQHYQGAGAG 381



>gi|6678581|ref|NP_033541.1| (NM_009515) Wiskott-Aldrich syndrome
           homolog; Wiskott-Aldrich syndrome protein [Mus musculus]
          Length = 520

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 57  PQPRRPGGSDPATASPRARPEPGRGGAP 140
           P P  P G  P   +PR  P PGRGG P
Sbjct: 358 PLPPVPMGGAPPPPTPRGPPPPGRGGPP 385



>gi|6680980|ref|NP_031769.1| (NM_007743) procollagen, type I, alpha
           2; osteogenesis imperfecta [Mus musculus]
          Length = 1373

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 32/79 (40%), Positives = 34/79 (42%), Gaps = 16/79 (20%)
 Frame = -2

Query: 278 PALRGAARY----GERAGTNLR-----------RGAPAGPRASPGKA-AGAQRCEAGTRG 147
           P  RGAA      GE+  T LR           RG P G   +PG A A   R EAG  G
Sbjct: 648 PGERGAAGIPGGKGEKGETGLRGDTGNTGRDGARGIP-GAVGAPGPAGASGDRGEAGAAG 706

Query: 146 CGGRPAPPRLRTGPRGGCG 90
             G PA PR   G RG  G
Sbjct: 707 PSG-PAGPRGSPGERGEVG 724


 Score = 29.3 bits (64), Expect = 4.3
 Identities = 25/69 (36%), Positives = 28/69 (40%)
 Frame = -2

Query: 296 PMSAARPALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRL 117
           P +   P   GA+     AG     G PAGPR SPG     +R E G       PA P
Sbjct: 684 PGAVGAPGPAGASGDRGEAGAAGPSG-PAGPRGSPG-----ERGEVG-------PAGPNG 730

Query: 116 RTGPRGGCG 90
             GP G  G
Sbjct: 731 FAGPAGAAG 739


 Score = 28.1 bits (61), Expect = 9.6
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = -3

Query: 142 EGAPPRPGSGRALGEAVAGSLPPGRRGCGVPSVEEAPAGRRRREDSV 2
           +G P  PG     G+A A  LP  R   G P     PAG R  + SV
Sbjct: 204 KGEPGAPGENGTPGQAGARGLPGERGRVGAP----GPAGARGSDGSV 246



>gi|28565277|ref|NP_787948.1| (NM_175934) protein phosphatase I;
           HLA-C adjacent transcript 53 [Mus musculus]
          Length = 874

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 23/64 (35%), Positives = 26/64 (39%)
 Frame = -2

Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRG 99
           P  RG   + +  G  +R G   G    PG A G      G RG G  P PP    G RG
Sbjct: 671 PPSRGGDPFWDGPGDPMRGGPMRG---GPGPAPGPYHRGRGGRG-GNEPPPPPPFRGARG 726

Query: 98  GCGG 87
           G  G
Sbjct: 727 GRSG 730



>gi|13242328|ref|NP_062640.1| (NM_019666) NS1-associated protein
           1-like; RRM RNA binding protein GRY-RBP [Mus musculus]
          Length = 625

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 22/46 (47%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
 Frame = -2

Query: 269 RGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGC-GGR 135
           RGAA    RAG + +RGAP   R   G   GAQ+   G RG  GGR
Sbjct: 515 RGAAPPRGRAGYS-QRGAPGSARGVRGARGGAQQRGRGVRGARGGR 559


  Database: RefSeq (Mus Musculus/Amino Acid)
    Posted date:  Jul 1, 2003  6:07 AM
  Number of letters in database: 7,155,815
  Number of sequences in database:  15,330

Lambda     K      H
   0.318    0.135    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19903330
Number of Sequences: 15330
Number of extensions: 535916
Number of successful extensions: 3032
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 1680
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 2682
length of query: 436
length of database: 7,155,815
effective HSP length: 47
effective length of query: 388
effective length of database: 6,435,305
effective search space: 2496898340
effective search space used: 2496898340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)