Animal-Genome cDNA Clone 20030531/20030531C-0/20030531C-001710


Query

>20030531C-001710 (20030531C-001710) 20030531C-001710
AGCAGCCTCG GGGCGGGGTG GGCGGGTGCA CTCCGGCGCG GACGCCGGTG
AGGGGGCGTG TTCCCCGTGC CCGGCGGCTG CCCGCGGGAC CCCCGAGGGC
CCTCCCGGGC TCCCGGTGCG ACCATGGCGC GGAGCCTCCG GAACTGGCTG
GGCGGCTGCC TACTGGTGTC AGCATTAGGA ATGGTGGTGC CACCTCCTGA
AAACGTCAGA ATGAATTCAG TTAATTTCAA GAACATTCTC CAGTGGGACT
CACCTGCTTT TCCCCAGGGG GATCTGACCT TCACAGCTCA GTATCACAGT
TATAGGCAAT TCCAGGATCA GTGTGTGAGC ATCATCTTGA CGGAGTGTGA
TTTCTCAAGT CTTTCCAAGT ACGGTGACCA CATCTTAAGA GTCAGGGCTG
AATTTGCAGA CGAGCATTCA GACTGGATAA ACATCACCTT CTGTCCTGTG
GATGACACCA TTATTGGACC TCCTGGAATG CAAGTAGAGG CACTTGCGAA
TTCTTTACAT ATGCGTTTCT TAGCCCCCAA AATTGAGAAT GAACCTGAAA
CATGGACTGT GAGGAATATT TATAACTCAT GGGCTTATCA TGTGCAATAT
TGGAAGAATG GCTCCGATGA AAAGTTTGCA GTTACCGCCC AGTATGACTT
CGAGGTCCTT CGAAATCTGG AGTCATCCAC AACTTACTGT GTTCAAGTCC
GAGCGTTTCT TCCCGATCGG AACAAAACCG GGGAATGGAG TGATCCTGTC
TGTGGGCAGA CGACCAATGA CGAAACCACC CCCACCTGGA TCGTGGCCTG
TGTCCTGGCC GCCTCGGTGG TCGCCGCCTT CCTGCTGCTC CCTCGCTGCT
TCATCTTGCT

Search to RefSeq (Human) database

Query= 20030531C-001710 (20030531C-001710) 20030531C-001710
         (860 letters)

Database: RefSeq (Homo Sapiens/Amino Acid)
           19,244 sequences; 10,046,356 total letters

Searching..................................................done

                                                                               Score     E
            Sequences producing significant alignments:                        (bits)  Value

Alignment   gi|24430215|ref|NP_000619.3| (NM_000628) interleukin 10 recepto...   396  e-111
Alignment   gi|31083156|ref|NP_055247.2| (NM_014432) interleukin 20 recepto...    89  5e-18
Alignment   gi|10835183|ref|NP_000620.1| (NM_000629) interferon (alpha, bet...    80  2e-15
Alignment   gi|5031783|ref|NP_005525.1| (NM_005534) interferon gamma recept...    62  5e-10
Alignment   gi|31317241|ref|NP_851826.1| (NM_181309) interleukin 22-binding...    50  3e-06
Alignment   gi|4557880|ref|NP_000407.1| (NM_000416) interferon gamma recept...    48  1e-05
Alignment   gi|16418459|ref|NP_443194.1| (NM_052962) interleukin 22-binding...    41  0.001
Alignment   gi|4504633|ref|NP_001549.1| (NM_001558) interleukin 10 receptor...    38  0.008
Alignment   gi|31317243|ref|NP_851827.1| (NM_181310) interleukin 22-binding...    37  0.018
Alignment   gi|12751477|ref|NP_075555.1| (NM_023067) forkhead box L2; Bleph...    34  0.12


>gi|24430215|ref|NP_000619.3| (NM_000628) interleukin 10 receptor,
           beta precursor; cytokine receptor family II, member 4;
           cytokine receptor class-II CRF2-4 [Homo sapiens]
          Length = 325

 Score =  396 bits (1018), Expect = e-111
 Identities = 184/223 (82%), Positives = 203/223 (90%)
 Frame = +1

Query: 124 MARSLRNWLGGCLLVSALGMVVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSY 303
           MA SL +WLGGCLLVSALGMV PPPENVRMNSVNFKNILQW+SPAF +G+LTFTAQY SY
Sbjct: 1   MAWSLGSWLGGCLLVSALGMV-PPPENVRMNSVNFKNILQWESPAFAKGNLTFTAQYLSY 59

Query: 304 RQFQDQCVSIILTECDFSSLSKYGDHILRVRAEFADEHSDWINITFCPVDDTIIGPPGMQ 483
           R FQD+C++  LTECDFSSLSKYGDH LRVRAEFADEHSDW+NITFCPVDDTIIGPPGMQ
Sbjct: 60  RIFQDKCMNTTLTECDFSSLSKYGDHTLRVRAEFADEHSDWVNITFCPVDDTIIGPPGMQ 119

Query: 484 VEALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLR 663
           VE LA+SLHMRFLAPKIENE ETWT++N+YNSW Y+VQYWKNG+DEKF +T QYDFEVLR
Sbjct: 120 VEVLADSLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKNGTDEKFQITPQYDFEVLR 179

Query: 664 NLESSTTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETTPTWI 792
           NLE  TTYCVQVR FLPDRNK GEWS+PVC QTT+DET P+W+
Sbjct: 180 NLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDETVPSWM 222



>gi|31083156|ref|NP_055247.2| (NM_014432) interleukin 20 receptor,
           alpha; class II cytokine receptor ZCYTOR7 [Homo sapiens]
          Length = 553

 Score = 88.6 bits (218), Expect = 5e-18
 Identities = 64/209 (30%), Positives = 103/209 (48%), Gaps = 11/209 (5%)
 Frame = +1

Query: 187 VPPPENVRMNSVNFKNILQWDSPAFPQG-DLTFTAQYHSYRQFQ----DQCVSIILTECD 351
           +P P N+   S+N KN+LQW  P   QG  +T+T QY  Y Q +     +C +I  T CD
Sbjct: 37  LPKPANITFLSINMKNVLQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCD 96

Query: 352 FSSLSKYGDH--ILRVRAEFADEHSDWINI-TFCPVDDTIIGPPGMQVEALANSLHMRFL 522
            S+ +   +H    +V+A +  + S W     F P  +T IGPP + +     S+ +
Sbjct: 97  LSAETSDYEHQYYAKVKAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLT 156

Query: 523 AP-KIENEPETWTV--RNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRNLESSTTYCV 693
           AP K +  PE   V  + IY++  Y+V      S+  ++        VL  LE +T YCV
Sbjct: 157 APEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCV 216

Query: 694 QVRAFLPDRNKTGEWSDPVCGQTTNDETT 780
            V +F+P   +  + S+  C +T  D+++
Sbjct: 217 HVESFVPGPPRRAQPSEKQCARTLKDQSS 245



>gi|10835183|ref|NP_000620.1| (NM_000629) interferon (alpha, beta
           and omega) receptor 1; human interferon-alpha receptor
           (HuIFN-alpha-Rec) [Homo sapiens]
          Length = 557

 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 18/220 (8%)
 Frame = +1

Query: 187 VPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQY-------------HSYRQFQDQCV 327
           +PPPEN+ ++  N   +L+WD   +   ++TF  Q+             + ++Q  D C
Sbjct: 229 LPPPENIEVSVQNQNYVLKWD---YTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPD-CE 284

Query: 328 SIILTECDF-SSLSKYGDHILRVRAEFADEHSDWIN-ITFCPVDDTIIGPPGMQVEALAN 501
           ++  T+C F  ++ + G ++LRV+A   +  S W   I F       + PP   + +L++
Sbjct: 285 NVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSD 344

Query: 502 SLHMRFLAPKIE-NEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRNLESS 678
           S H+   APK   N P       IY      + +W+N S+ +  +  +     + NL+
Sbjct: 345 SFHIYIGAPKQSGNTPVIQDYPLIYE-----IIFWENTSNAERKIIEKKTDVTVPNLKPL 399

Query: 679 TTYCVQVRAFLPDR--NKTGEWSDPVCGQTTNDETTPTWI 792
           T YCV+ RA   D   NK+  +SD VC +T    T+  W+
Sbjct: 400 TVYCVKARAHTMDEKLNKSSVFSDAVCEKTKPGNTSKIWL 439


 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 60/215 (27%), Positives = 103/215 (47%), Gaps = 7/215 (3%)
 Frame = +1

Query: 160 LLVSALGMVVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSYRQFQ----DQCV 327
           L  +A G  +  P+ V ++ ++   IL+W+      G++TF+  Y             C
Sbjct: 21  LSAAAGGKNLKSPQKVEVDIIDDNFILRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQ 80

Query: 328 SIILTECDFSSL--SKYGDHILRVRAEFADEHSDWINI-TFCPVDDTIIGPPGMQVEALA 498
           +I  T+C+FSSL  + Y +  LR+RAE  +  S W  + +F P     IGPP + +EA
Sbjct: 81  NITSTKCNFSSLKLNVYEEIKLRIRAE-KENTSSWYEVDSFTPFRKAQIGPPEVHLEAED 139

Query: 499 NSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRNLESS 678
            ++ +  ++P  ++    W +  +  S+ Y +  WKN S  +  +   Y    +  L
Sbjct: 140 KAIVIH-ISPGTKDSV-MWALDGL--SFTYSLLIWKNSSGVEERIENIYSRHKIYKLSPE 195

Query: 679 TTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETTP 783
           TTYC++V+A L    K G +S   C +TT +   P
Sbjct: 196 TTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELP 230



>gi|5031783|ref|NP_005525.1| (NM_005534) interferon gamma receptor 2
           (interferon gamma transducer 1); interferon gamma
           receptor accessory factor-1; interferon-gamma receptor
           beta chain precursor [Homo sapiens]
          Length = 337

 Score = 62.0 bits (149), Expect = 5e-10
 Identities = 57/223 (25%), Positives = 94/223 (41%), Gaps = 25/223 (11%)
 Frame = +1

Query: 187 VPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSYRQFQDQ-------------CV 327
           +P P++ ++   N + +L W+  A      T    Y    ++ D              C
Sbjct: 30  LPAPQHPKIRLYNAEQVLSWEPVALSNS--TRPVVYRVQFKYTDSKWFTADIMSIGVNCT 87

Query: 328 SIILTECDFSSLSKYGDH------ILRVRAEFADEHSDWINIT-FCPVDDTIIGPP-GMQ 483
            I  TECDF++ S            LR+RAE    HS W+ +  F    +  +GPP  ++
Sbjct: 88  QITATECDFTAASPSAGFPMDFNVTLRLRAELGALHSAWVTMPWFQHYRNVTVGPPENIE 147

Query: 484 VEALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLR 663
           V     SL +RF +P    +  T         + Y+V YW+ G  ++     + +   L
Sbjct: 148 VTPGEGSLIIRFSSPFDIADTST-------AFFCYYVHYWEKGGIQQVKGPFRSNSISLD 200

Query: 664 NLESSTTYCVQVRAFL----PDRNKTGEWSDPVCGQTTNDETT 780
           NL+ S  YC+QV+A L     +  + G  S+  C +T  D +T
Sbjct: 201 NLKPSRVYCLQVQAQLLWNKSNIFRVGHLSNISCYETMADAST 243



>gi|31317241|ref|NP_851826.1| (NM_181309) interleukin 22-binding
           protein isoform 2; class II cytokine receptor;
           interleukin 22-binding protein [Homo sapiens]
          Length = 231

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 53/201 (26%), Positives = 79/201 (38%), Gaps = 15/201 (7%)
 Frame = +1

Query: 196 PENVRMNSVNFKNILQWD-SPAFPQGDLTFTAQYHSYRQFQ----DQCVSIILTECDFSS 360
           P+ V+  S NF NILQW    A       +  QY  Y Q Q    + C       CD +S
Sbjct: 31  PQRVQFQSRNFHNILQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTS 90

Query: 361 LSK------YGDHILRVRAEFADEHSDW-INITFCPVDDTIIGPPGMQVEALANSLHMRF 519
            +       YG    RVRA  A  +S+W +   F P  +T I PP M +  +  SL +
Sbjct: 91  ETSDIQEPYYG----RVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSLLVIL 146

Query: 520 LAPKI--ENEPETWTVRNIYNSWAYHVQYWKNGSD-EKFAVTAQYDFEVLRNLESSTTYC 690
            AP +    + E       Y    Y V    N  + E+      +    +  L   ++YC
Sbjct: 147 HAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEGAHRAVEIEALTPHSSYC 206

Query: 691 VQVRAFLPDRNKTGEWSDPVC 753
           V    + P  ++  + S+  C
Sbjct: 207 VVAEIYQPMLDRRSQRSEERC 227



>gi|4557880|ref|NP_000407.1| (NM_000416) interferon gamma receptor
           1; Immune interferon, receptor for [Homo sapiens]
          Length = 489

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 51/219 (23%), Positives = 86/219 (38%), Gaps = 30/219 (13%)
 Frame = +1

Query: 187 VPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSY----RQFQDQCVSIILTECDF 354
           VP P NV + S N   I+ W+    PQ  + FT +  +Y     ++ D C++I    C+
Sbjct: 29  VPTPTNVTIESYNMNPIVYWEYQIMPQVPV-FTVEVKNYGVKNSEWIDACINISHHYCNI 87

Query: 355 SSLSKYGDHI--------LRVRAEFADEHSDWI-NITFCPVDDTIIGPPGMQVEALANSL 507
           S      DH+        +RV+A    + S +  +  F    D  IGPP + +      +
Sbjct: 88  S------DHVGDPSNSLWVRVKARVGQKESAYAKSEEFAVCRDGKIGPPKLDIRKEEKQI 141

Query: 508 HMRFLAP---------KIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFE-- 654
            +    P         +++ +PET     +YN     V    NGS+ ++ +  Q + +
Sbjct: 142 MIDIFHPSVFVNGDEQEVDYDPETTCYIRVYN-----VYVRMNGSEIQYKILTQKEDDCD 196

Query: 655 ------VLRNLESSTTYCVQVRAFLPDRNKTGEWSDPVC 753
                  +     ++ YCV     L     T E S  VC
Sbjct: 197 EIQCQLAIPVSSLNSQYCVSAEGVLHVWGVTTEKSKEVC 235



>gi|16418459|ref|NP_443194.1| (NM_052962) interleukin 22-binding
           protein isoform 1; class II cytokine receptor;
           interleukin 22-binding protein [Homo sapiens]
          Length = 263

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 55/231 (23%), Positives = 83/231 (35%), Gaps = 45/231 (19%)
 Frame = +1

Query: 196 PENVRMNSVNFKNILQWD---------SPAFPQGDLTFTAQYHSYRQFQDQCVSIILTEC 348
           P+ V+  S NF NILQW          S  F Q  + F+    S  Q    C   I   C
Sbjct: 31  PQRVQFQSRNFHNILQWQPGRALTGNSSVYFVQYKIMFSCSMKSSHQKPSGCWQHI--SC 88

Query: 349 DFS---SLSKYGD-----------------------------HILRVRAEFADEHSDW-I 429
           +F    +L+KYG                              +  RVRA  A  +S+W +
Sbjct: 89  NFPGCRTLAKYGQRQWKNKEDCWGTQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSM 148

Query: 430 NITFCPVDDTIIGPPGMQVEALANSLHMRFLAPKI--ENEPETWTVRNIYNSWAYHVQYW 603
              F P  +T I PP M +  +  SL +   AP +    + E       Y    Y V
Sbjct: 149 TPRFTPWWETKIDPPVMNITQVNGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFII 208

Query: 604 KNGSD-EKFAVTAQYDFEVLRNLESSTTYCVQVRAFLPDRNKTGEWSDPVC 753
            N  + E+      +    +  L   ++YCV    + P  ++  + S+  C
Sbjct: 209 NNSLEKEQKVYEGAHRAVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEERC 259



>gi|4504633|ref|NP_001549.1| (NM_001558) interleukin 10 receptor,
           alpha precursor [Homo sapiens]
          Length = 578

 Score = 38.1 bits (87), Expect = 0.008
 Identities = 49/216 (22%), Positives = 83/216 (37%), Gaps = 11/216 (5%)
 Frame = +1

Query: 172 ALGMVVPPPENVRMNSVNFKNILQW-------DSPAFPQGDLTFTAQYHSYRQFQDQCVS 330
           A G  +P P +V   +  F +IL W       +S  +    L +  +  +      Q +S
Sbjct: 21  AHGTELPSPPSVWFEAEFFHHILHWTPIPNQSESTCYEVALLRYGIESWNSISNCSQTLS 80

Query: 331 IILTECDFSSLSKYGDHILRVRAEFADEHSDW-INITFCPVDDTIIGPPGMQVEALANSL 507
             LT          G +  RVRA     HS+W +  T   VD+  +    + +E     +
Sbjct: 81  YDLTAVTLDLYHSNG-YRARVRAVDGSRHSNWTVTNTRFSVDEVTLTVGSVNLEIHNGFI 139

Query: 508 HMRFLAPKIENEPETWTVRNIYNSWA-YHVQYWKNGSDEKFA--VTAQYDFEVLRNLESS 678
             +   P+ +  P   T  +I++ +  Y +   K   +  F        +F +L + E
Sbjct: 140 LGKIQLPRPKMAPANDTYESIFSHFREYEIAIRKVPGNFTFTHKKVKHENFSLLTSGEVG 199

Query: 679 TTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETTPT 786
             +CVQV+  +  R+  G WS   C   T    T T
Sbjct: 200 E-FCVQVKPSVASRSNKGMWSKEECISLTRQYFTVT 234



>gi|31317243|ref|NP_851827.1| (NM_181310) interleukin 22-binding
           protein isoform 3; class II cytokine receptor;
           interleukin 22-binding protein [Homo sapiens]
          Length = 130

 Score = 37.0 bits (84), Expect = 0.018
 Identities = 29/88 (32%), Positives = 37/88 (41%), Gaps = 11/88 (12%)
 Frame = +1

Query: 196 PENVRMNSVNFKNILQWD-SPAFPQGDLTFTAQYHSYRQFQ----DQCVSIILTECDFSS 360
           P+ V+  S NF NILQW    A       +  QY  Y Q Q    + C       CD +S
Sbjct: 31  PQRVQFQSRNFHNILQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTS 90

Query: 361 LSK------YGDHILRVRAEFADEHSDW 426
            +       YG    RVRA  A  +S+W
Sbjct: 91  ETSDIQEPYYG----RVRAASAGSYSEW 114



>gi|12751477|ref|NP_075555.1| (NM_023067) forkhead box L2;
           Blepharophimosis, epicanthus inversus, and ptosis 1;
           blepharophimosis, epicanthus inversus and ptosis;
           forkhead transcription factor FOXL2 [Homo sapiens]
          Length = 376

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 21/62 (33%), Positives = 23/62 (36%), Gaps = 4/62 (6%)
 Frame = -3

Query: 189 HHHS*C*HXXXXXQPVPEAPRHGRTGSPGGPSGVPRAAAGHGEHAPSPASAP----ECTR 22
           H H    H      P P  P HG    P G    P + A     AP+P SAP     C R
Sbjct: 291 HPHPHAHHLHAAAAPPPAPPHHGAAAPPPGQLS-PASPATAAPPAPAPTSAPGLQFACAR 349

Query: 21  PP 16
            P
Sbjct: 350 QP 351


  Database: RefSeq (Homo Sapiens/Amino Acid)
    Posted date:  Jul 1, 2003  6:07 AM
  Number of letters in database: 10,046,356
  Number of sequences in database:  19,244

Lambda     K      H
   0.318    0.135    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19513928
Number of Sequences: 19244
Number of extensions: 552333
Number of successful extensions: 3833
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 2288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3752
length of query: 286
length of database: 10,046,356
effective HSP length: 47
effective length of query: 239
effective length of database: 9,141,888
effective search space: 2184911232
effective search space used: 2184911232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)

Search to RefSeq (Mouse) database

Query= 20030531C-001710 (20030531C-001710) 20030531C-001710
         (860 letters)

Database: RefSeq (Mus Musculus/Amino Acid)
           15,330 sequences; 7,155,815 total letters

Searching..................................................done

                                                                               Score     E
            Sequences producing significant alignments:                        (bits)  Value

Alignment   gi|6680391|ref|NP_032375.1| (NM_008349) interleukin 10 receptor...   346  8e-96
Alignment   gi|6754302|ref|NP_034638.1| (NM_010508) interferon (alpha and b...    82  3e-16
Alignment   gi|27370160|ref|NP_766374.1| (NM_172786) hypothetical protein E...    77  9e-15
Alignment   gi|30142711|ref|NP_839989.1| (NM_178258) interleukin 22 soluble...    50  1e-06
Alignment   gi|6680373|ref|NP_032364.1| (NM_008338) interferon gamma recept...    49  3e-06
Alignment   gi|30142709|ref|NP_839988.1| (NM_178257) interleukin-22 recepto...    36  0.022
Alignment   gi|6679207|ref|NP_032805.1| (NM_008779) contactin 3; plasmacyto...    35  0.037
Alignment   gi|22779928|ref|NP_036150.1| (NM_012020) forkhead box L2; pitui...    34  0.083
Alignment   gi|27807307|ref|NP_777276.1| (NM_174851) interleukin 28 recepto...    34  0.11
Alignment   gi|31542014|ref|NP_084210.2| (NM_029934) RIKEN cDNA 5730589L02 ...    33  0.18


>gi|6680391|ref|NP_032375.1| (NM_008349) interleukin 10 receptor,
           beta [Mus musculus]
          Length = 349

 Score =  346 bits (888), Expect = 8e-96
 Identities = 157/223 (70%), Positives = 187/223 (83%)
 Frame = +1

Query: 124 MARSLRNWLGGCLLVSALGMVVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSY 303
           MA  +  WLGG LLV ALGM+ PPPE VRMNSVNFKNILQW+ PAFP+ +LTFTAQY SY
Sbjct: 1   MAPCVAGWLGGFLLVPALGMI-PPPEKVRMNSVNFKNILQWEVPAFPKTNLTFTAQYESY 59

Query: 304 RQFQDQCVSIILTECDFSSLSKYGDHILRVRAEFADEHSDWINITFCPVDDTIIGPPGMQ 483
           R FQD C     T+CDFS LSKYGD+ +RVRAE ADEHS+W+N+TFCPV+DTIIGPP MQ
Sbjct: 60  RSFQDHCKRTASTQCDFSHLSKYGDYTVRVRAELADEHSEWVNVTFCPVEDTIIGPPEMQ 119

Query: 484 VEALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLR 663
           +E+LA SLH+RF AP+IENEPETWT++NIY+SWAY VQYWKNG++EKF V + YD EVLR
Sbjct: 120 IESLAESLHLRFSAPQIENEPETWTLKNIYDSWAYRVQYWKNGTNEKFQVVSPYDSEVLR 179

Query: 664 NLESSTTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETTPTWI 792
           NLE  TTYC+QV+ FL D+N+TGEWS+P+C +T NDE TP+WI
Sbjct: 180 NLEPWTTYCIQVQGFLLDQNRTGEWSEPICERTGNDEITPSWI 222



>gi|6754302|ref|NP_034638.1| (NM_010508) interferon (alpha and beta)
           receptor 1; interferon (alpha and beta) receptor; INF-a
           receptor [Mus musculus]
          Length = 590

 Score = 82.4 bits (202), Expect = 3e-16
 Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 7/206 (3%)
 Frame = +1

Query: 169 SALGMVVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSYRQFQ----DQCVSII 336
           +A G  + PPEN+ +  ++    L+W S     G +TF+A+Y +  + +     +C
Sbjct: 23  AAGGENLKPPENIDVYIIDDNYTLKWSSHGESMGSVTFSAEYRTKDEAKWLKVPECQHTT 82

Query: 337 LTECDFSSLSK--YGDHILRVRAEFADEHSDWINIT-FCPVDDTIIGPPGMQVEALANSL 507
            T+C+FS L    Y     RVRAE  +  S W  +  F P     + PP +++EA   ++
Sbjct: 83  TTKCEFSLLDTNVYIKTQFRVRAEEGNSTSSWNEVDPFIPFYTAHMSPPEVRLEAEDKAI 142

Query: 508 HMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRNLESSTTY 687
            +    P    +   W +     S++Y ++ W+  S +K  + + Y  E +  L   TTY
Sbjct: 143 LVHISPPG--QDGNMWALEK--PSFSYTIRIWQKSSSDKKTINSTYYVEKIPELLPETTY 198

Query: 688 CVQVRAFLPDRNKTGEWSDPVCGQTT 765
           C++V+A  P   K   +S   C  TT
Sbjct: 199 CLEVKAIHPSLKKHSNYSTVQCISTT 224


 Score = 61.6 bits (148), Expect = 5e-10
 Identities = 57/217 (26%), Positives = 95/217 (43%), Gaps = 15/217 (6%)
 Frame = +1

Query: 187 VPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQY------HSYRQFQDQ------CVS 330
           +P P N+++++     +L+WD  A    D+ F AQ+       S     D+      C +
Sbjct: 229 MPVPGNLQVDAQGKSYVLKWDYIA--SADVLFRAQWLPGYSKSSSGSHSDKWKPIPTCAN 286

Query: 331 IILTECDFSSLSKY-GDHILRVRAEFADEHSDWINITFCPVDDTIIGPPGM-QVEALANS 504
           +  T C FS  + Y G   L V+A   +  S W    F      I+ PP +  V A++++
Sbjct: 287 VQTTHCVFSQDTVYTGTFFLHVQASEGNHTSFWSEEKFIDSQKHILPPPPVITVTAMSDT 346

Query: 505 LHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRNLESSTT 684
           L +      +  +  T    N      Y + +W+N S+ K ++        L+NL+  T
Sbjct: 347 LLVY-----VNCQDSTCDGLN------YEIIFWENTSNTKISMEKDGPEFTLKNLQPLTV 395

Query: 685 YCVQVRA-FLPDRNKTGEWSDPVCGQTTNDETTPTWI 792
           YCVQ R  F    NKT  +S+ +C +T     +  WI
Sbjct: 396 YCVQARVLFRALLNKTSNFSEKLCEKTRPGSFSTIWI 432



>gi|27370160|ref|NP_766374.1| (NM_172786) hypothetical protein
           E230031K19 [Mus musculus]
          Length = 546

 Score = 77.4 bits (189), Expect = 9e-15
 Identities = 65/225 (28%), Positives = 102/225 (44%), Gaps = 18/225 (8%)
 Frame = +1

Query: 160 LLVSALGMVVP-------PPENVRMNSVNFKNILQWDSPAFPQG-DLTFTAQYHSYRQFQ 315
           LL++A G  VP        P N+   S+N KN+L W+ P    G ++T+T QY  Y Q +
Sbjct: 24  LLLAASGRAVPCVFCGLPKPTNITFLSINMKNVLHWNPPESLHGVEVTYTVQYFIYGQKK 83

Query: 316 ----DQCVSIILTECDFSSLSKYGDH--ILRVRAEFADEHSDWINIT-FCPVDDTIIGPP 474
                +C SI  T CD S  +   +H    +V+A +    S+W     F P  +T + PP
Sbjct: 84  WLNASKCGSINRTYCDLSVETSDYEHQFYAKVKAIWEARCSEWAETERFYPFLETQVSPP 143

Query: 475 GMQVEALANSLHMRFLAP-KIENEPETWTV--RNIYNSWAYHVQYWKNGSDEKFAVTAQY 645
            + +     S+ +   AP K +  P+  TV  + IY +  Y+V  +   S   ++
Sbjct: 144 EVALTTGEKSISIALTAPEKWKRNPQDHTVSMQQIYPNLKYNVSVYNTKSRRTWSQCVTN 203

Query: 646 DFEVLRNLESSTTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETT 780
              VL  LE +T YCV V + +P   +    S   C  T   +T+
Sbjct: 204 STLVLSWLEPNTLYCVHVESLVPGPPRLPMPSQKQCISTLEVQTS 248



>gi|30142711|ref|NP_839989.1| (NM_178258) interleukin 22 soluble
           receptor [Mus musculus]
          Length = 230

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 50/199 (25%), Positives = 78/199 (39%), Gaps = 11/199 (5%)
 Frame = +1

Query: 196 PENVRMNSVNFKNILQWDS-PAFPQGDLTFTAQYHSYRQFQDQ----CVSIILTECDFS- 357
           P+ VR  S NF NIL W +  + P  +  +  QY  Y Q Q +    C       CD +
Sbjct: 30  PQKVRFQSRNFHNILHWQAGSSLPSNNSIYFVQYKMYGQSQWEDKVDCWGTTALFCDLTN 89

Query: 358 -SLSKYGDHILRVRAEFADEHSDWINI-TFCPVDDTIIGPPGMQVEALANSLHMRFLAPK 531
            +L  Y  +  RV    A  HS W     F P  +T + PP + +  +  SL +    P
Sbjct: 90  ETLDPYELYYGRVMTACAGRHSAWTRTPRFTPWWETKLDPPVVTITRVNASLRVLLRPPD 149

Query: 532 IENEPETWTVRNI--YNSWAYHVQYWKNGSD-EKFAVTAQYDFEVLRNLESSTTYCVQVR 702
           + N  ++    ++  Y    Y V    N  + E+ A         +  L   ++YCV
Sbjct: 150 LPNRNQSGKNASMETYYGLVYRVFTINNSLEKEQKAYEGTQRAVEIEGLIPHSSYCVVAE 209

Query: 703 AFLPDRNKTGEWSDPVCGQ 759
            + P  ++    S   C Q
Sbjct: 210 MYQPMFDRRSPRSKERCVQ 228



>gi|6680373|ref|NP_032364.1| (NM_008338) interferon gamma receptor 2
           [Mus musculus]
          Length = 332

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 64/243 (26%), Positives = 97/243 (39%), Gaps = 31/243 (12%)
 Frame = +1

Query: 130 RSLRNWLGGCLLVSALGMVVPPPE---------NVRMNSVNFKNILQWDSPAFPQGD--- 273
           R L  WL   LL+  LG     P+         N R++  N + IL W+ P+    D
Sbjct: 2   RPLPLWLPS-LLLCGLGAAASSPDSFSQLAAPLNPRLHLYNDEQILTWE-PSPSSNDPRP 59

Query: 274 LTFTAQYHS-----YRQFQDQCVSIILTECDFSSLS--KYGDH----ILRVRAEFADEHS 420
           + +  +Y       +R  +  C  I  T+CD +     K   H     LRVRA+  +  S
Sbjct: 60  VVYQVEYSFIDGSWHRLLEPNCTDITETKCDLTGGGRLKLFPHPFTVFLRVRAKRGNLTS 119

Query: 421 DWINIT-FCPVDDTIIGPP-GMQVEALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHV 594
            W+ +  F   ++  +GPP  + V     SL + F  P       T+          Y V
Sbjct: 120 KWVGLEPFQHYENVTVGPPKNISVTPGKGSLVIHFSPPFDVFHGATFQ---------YLV 170

Query: 595 QYWKNGSDEKFAVTAQYDFE--VLRNLESSTTYCVQVRAFLPDRNKT----GEWSDPVCG 756
            YW+    ++  V   +     VL NL+    YC+Q  A L  +NK     G  S+  C
Sbjct: 171 HYWEKSETQQEQVEGPFKSNSIVLGNLKPYRVYCLQTEAQLILKNKKIRPHGLLSNVSCH 230

Query: 757 QTT 765
           +TT
Sbjct: 231 ETT 233



>gi|30142709|ref|NP_839988.1| (NM_178257) interleukin-22 receptor
           alpha chain [Mus musculus]
          Length = 581

 Score = 36.2 bits (82), Expect = 0.022
 Identities = 45/209 (21%), Positives = 80/209 (37%), Gaps = 15/209 (7%)
 Frame = +1

Query: 199 ENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSYRQ----FQDQCVSIILTECDFSSLS 366
           ++V+  S NF+NIL WD       D  ++ +Y  Y +     +  C  I    C+ +  +
Sbjct: 26  QHVKFQSSNFENILTWDGGPASTSDTVYSVEYKKYGERKWLAKAGCQRITQKFCNLTMET 85

Query: 367 K-----YGDHILRVRA------EFADEHSDWINITFCPVDDTIIGPPGMQVEALANSLHM 513
           +     Y   +  V A      +  D  S   + T  P D T I P    ++ L +
Sbjct: 86  RNHTEFYYAKVTAVSAGGPPVTKMTDRFSSLQHTTIKPPDVTCI-PKVRSIQMLVHPT-- 142

Query: 514 RFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRNLESSTTYCV 693
             L P +  +    T+  I++   Y ++   N + +      Q ++E L  L   T +
Sbjct: 143 --LTPVLSEDGHQLTLEEIFHDLFYRLELHVNHTYQMHLEGKQREYEFL-GLTPDTEFLG 199

Query: 694 QVRAFLPDRNKTGEWSDPVCGQTTNDETT 780
            +    P  +K  E +  VC   T  + T
Sbjct: 200 SITILTPILSK--ESAPYVCRVKTLPDRT 226



>gi|6679207|ref|NP_032805.1| (NM_008779) contactin 3;
            plasmacytoma-associated neuronal glycoprotein [Mus
            musculus]
          Length = 1028

 Score = 35.4 bits (80), Expect = 0.037
 Identities = 23/71 (32%), Positives = 30/71 (41%), Gaps = 4/71 (5%)
 Frame = +1

Query: 586  YHVQYWKNGSDE----KFAVTAQYDFEVLRNLESSTTYCVQVRAFLPDRNKTGEWSDPVC 753
            Y V+YW NG +E    K  V       VLR L+S+  Y   VRA+    N  G
Sbjct: 838  YEVRYWNNGGEEESSRKVKVAGNQTSAVLRGLKSNLAYYTAVRAY----NSAGAGPFSAT 893

Query: 754  GQTTNDETTPT 786
               T  +T P+
Sbjct: 894  VNATTKKTPPS 904



>gi|22779928|ref|NP_036150.1| (NM_012020) forkhead box L2; pituitary
           forkhead factor [Mus musculus]
          Length = 375

 Score = 34.3 bits (77), Expect = 0.083
 Identities = 21/62 (33%), Positives = 23/62 (36%), Gaps = 4/62 (6%)
 Frame = -3

Query: 189 HHHS*C*HXXXXXQPVPEAPRHGRTGSPGGPSGVPRAAAGHGEHAPSPASAP----ECTR 22
           H H    H      P P  P HG    P G    P + A     AP+P SAP     C R
Sbjct: 290 HPHPHAHHLHAAAAPPPAPPHHGAAAPPPGQLS-PASPATAAPPAPAPTSAPGLQFACAR 348

Query: 21  PP 16
            P
Sbjct: 349 QP 350



>gi|27807307|ref|NP_777276.1| (NM_174851) interleukin 28 receptor
           alpha; class II cytokine receptor 12; interferon-lambda
           receptor 1 [Mus musculus]
          Length = 535

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 9/164 (5%)
 Frame = +1

Query: 160 LLVSALGMV-VPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSYRQF----QDQC 324
           LL SALG   + PP NV + S NF   L W        ++T+   Y SY +      + C
Sbjct: 14  LLQSALGRPRLAPPRNVTLFSQNFTVYLTWLPGLGSPPNVTYFVTYQSYIKTGWRPVEHC 73

Query: 325 VSIILTECDFSSLSK---YGDHILRVRAEFADEHSDWINITFCP-VDDTIIGPPGMQVEA 492
             I    C    L K   Y     RV+A  A   S  +   +   + D  + PP + +
Sbjct: 74  AGIKALVCPLMCLKKLNLYSKFKGRVQAASAHGRSPRVESRYLEYLFDVELAPPTLVLTQ 133

Query: 493 LANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEK 624
           +   L +          P             Y V++WK G   K
Sbjct: 134 MEKILRVNATYQLPPCMPSL--------ELKYQVEFWKEGLGSK 169



>gi|31542014|ref|NP_084210.2| (NM_029934) RIKEN cDNA 5730589L02 [Mus
           musculus]
          Length = 473

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 15/43 (34%), Positives = 26/43 (59%), Gaps = 1/43 (2%)
 Frame = +1

Query: 613 SDEKFAVTAQYDFEVLRNLES-STTYCVQVRAFLPDRNKTGEW 738
           S  + A + +YD+E +RN++   T +CV+VR  +   N T +W
Sbjct: 284 SSPEIAASLEYDYETIRNIDCYGTDFCVRVRDGMRYWNMTVQW 326


  Database: RefSeq (Mus Musculus/Amino Acid)
    Posted date:  Jul 1, 2003  6:07 AM
  Number of letters in database: 7,155,815
  Number of sequences in database:  15,330

Lambda     K      H
   0.318    0.135    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13649637
Number of Sequences: 15330
Number of extensions: 372590
Number of successful extensions: 2133
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2094
length of query: 286
length of database: 7,155,815
effective HSP length: 47
effective length of query: 239
effective length of database: 6,435,305
effective search space: 1538037895
effective search space used: 1538037895
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)