Search to RefSeq (Human) database
Query= 20030531C-001710 (20030531C-001710) 20030531C-001710
(860 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,244 sequences; 10,046,356 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|24430215|ref|NP_000619.3| (NM_000628) interleukin 10 recepto... 396 e-111
Alignment gi|31083156|ref|NP_055247.2| (NM_014432) interleukin 20 recepto... 89 5e-18
Alignment gi|10835183|ref|NP_000620.1| (NM_000629) interferon (alpha, bet... 80 2e-15
Alignment gi|5031783|ref|NP_005525.1| (NM_005534) interferon gamma recept... 62 5e-10
Alignment gi|31317241|ref|NP_851826.1| (NM_181309) interleukin 22-binding... 50 3e-06
Alignment gi|4557880|ref|NP_000407.1| (NM_000416) interferon gamma recept... 48 1e-05
Alignment gi|16418459|ref|NP_443194.1| (NM_052962) interleukin 22-binding... 41 0.001
Alignment gi|4504633|ref|NP_001549.1| (NM_001558) interleukin 10 receptor... 38 0.008
Alignment gi|31317243|ref|NP_851827.1| (NM_181310) interleukin 22-binding... 37 0.018
Alignment gi|12751477|ref|NP_075555.1| (NM_023067) forkhead box L2; Bleph... 34 0.12
>gi|24430215|ref|NP_000619.3| (NM_000628) interleukin 10 receptor,
beta precursor; cytokine receptor family II, member 4;
cytokine receptor class-II CRF2-4 [Homo sapiens]
Length = 325
Score = 396 bits (1018), Expect = e-111
Identities = 184/223 (82%), Positives = 203/223 (90%)
Frame = +1
Query: 124 MARSLRNWLGGCLLVSALGMVVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSY 303
MA SL +WLGGCLLVSALGMV PPPENVRMNSVNFKNILQW+SPAF +G+LTFTAQY SY
Sbjct: 1 MAWSLGSWLGGCLLVSALGMV-PPPENVRMNSVNFKNILQWESPAFAKGNLTFTAQYLSY 59
Query: 304 RQFQDQCVSIILTECDFSSLSKYGDHILRVRAEFADEHSDWINITFCPVDDTIIGPPGMQ 483
R FQD+C++ LTECDFSSLSKYGDH LRVRAEFADEHSDW+NITFCPVDDTIIGPPGMQ
Sbjct: 60 RIFQDKCMNTTLTECDFSSLSKYGDHTLRVRAEFADEHSDWVNITFCPVDDTIIGPPGMQ 119
Query: 484 VEALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLR 663
VE LA+SLHMRFLAPKIENE ETWT++N+YNSW Y+VQYWKNG+DEKF +T QYDFEVLR
Sbjct: 120 VEVLADSLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKNGTDEKFQITPQYDFEVLR 179
Query: 664 NLESSTTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETTPTWI 792
NLE TTYCVQVR FLPDRNK GEWS+PVC QTT+DET P+W+
Sbjct: 180 NLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDETVPSWM 222
>gi|31083156|ref|NP_055247.2| (NM_014432) interleukin 20 receptor,
alpha; class II cytokine receptor ZCYTOR7 [Homo sapiens]
Length = 553
Score = 88.6 bits (218), Expect = 5e-18
Identities = 64/209 (30%), Positives = 103/209 (48%), Gaps = 11/209 (5%)
Frame = +1
Query: 187 VPPPENVRMNSVNFKNILQWDSPAFPQG-DLTFTAQYHSYRQFQ----DQCVSIILTECD 351
+P P N+ S+N KN+LQW P QG +T+T QY Y Q + +C +I T CD
Sbjct: 37 LPKPANITFLSINMKNVLQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCD 96
Query: 352 FSSLSKYGDH--ILRVRAEFADEHSDWINI-TFCPVDDTIIGPPGMQVEALANSLHMRFL 522
S+ + +H +V+A + + S W F P +T IGPP + + S+ +
Sbjct: 97 LSAETSDYEHQYYAKVKAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLT 156
Query: 523 AP-KIENEPETWTV--RNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRNLESSTTYCV 693
AP K + PE V + IY++ Y+V S+ ++ VL LE +T YCV
Sbjct: 157 APEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCV 216
Query: 694 QVRAFLPDRNKTGEWSDPVCGQTTNDETT 780
V +F+P + + S+ C +T D+++
Sbjct: 217 HVESFVPGPPRRAQPSEKQCARTLKDQSS 245
>gi|10835183|ref|NP_000620.1| (NM_000629) interferon (alpha, beta
and omega) receptor 1; human interferon-alpha receptor
(HuIFN-alpha-Rec) [Homo sapiens]
Length = 557
Score = 80.1 bits (196), Expect = 2e-15
Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 18/220 (8%)
Frame = +1
Query: 187 VPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQY-------------HSYRQFQDQCV 327
+PPPEN+ ++ N +L+WD + ++TF Q+ + ++Q D C
Sbjct: 229 LPPPENIEVSVQNQNYVLKWD---YTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPD-CE 284
Query: 328 SIILTECDF-SSLSKYGDHILRVRAEFADEHSDWIN-ITFCPVDDTIIGPPGMQVEALAN 501
++ T+C F ++ + G ++LRV+A + S W I F + PP + +L++
Sbjct: 285 NVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSD 344
Query: 502 SLHMRFLAPKIE-NEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRNLESS 678
S H+ APK N P IY + +W+N S+ + + + + NL+
Sbjct: 345 SFHIYIGAPKQSGNTPVIQDYPLIYE-----IIFWENTSNAERKIIEKKTDVTVPNLKPL 399
Query: 679 TTYCVQVRAFLPDR--NKTGEWSDPVCGQTTNDETTPTWI 792
T YCV+ RA D NK+ +SD VC +T T+ W+
Sbjct: 400 TVYCVKARAHTMDEKLNKSSVFSDAVCEKTKPGNTSKIWL 439
Score = 74.3 bits (181), Expect = 1e-13
Identities = 60/215 (27%), Positives = 103/215 (47%), Gaps = 7/215 (3%)
Frame = +1
Query: 160 LLVSALGMVVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSYRQFQ----DQCV 327
L +A G + P+ V ++ ++ IL+W+ G++TF+ Y C
Sbjct: 21 LSAAAGGKNLKSPQKVEVDIIDDNFILRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQ 80
Query: 328 SIILTECDFSSL--SKYGDHILRVRAEFADEHSDWINI-TFCPVDDTIIGPPGMQVEALA 498
+I T+C+FSSL + Y + LR+RAE + S W + +F P IGPP + +EA
Sbjct: 81 NITSTKCNFSSLKLNVYEEIKLRIRAE-KENTSSWYEVDSFTPFRKAQIGPPEVHLEAED 139
Query: 499 NSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRNLESS 678
++ + ++P ++ W + + S+ Y + WKN S + + Y + L
Sbjct: 140 KAIVIH-ISPGTKDSV-MWALDGL--SFTYSLLIWKNSSGVEERIENIYSRHKIYKLSPE 195
Query: 679 TTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETTP 783
TTYC++V+A L K G +S C +TT + P
Sbjct: 196 TTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELP 230
>gi|5031783|ref|NP_005525.1| (NM_005534) interferon gamma receptor 2
(interferon gamma transducer 1); interferon gamma
receptor accessory factor-1; interferon-gamma receptor
beta chain precursor [Homo sapiens]
Length = 337
Score = 62.0 bits (149), Expect = 5e-10
Identities = 57/223 (25%), Positives = 94/223 (41%), Gaps = 25/223 (11%)
Frame = +1
Query: 187 VPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSYRQFQDQ-------------CV 327
+P P++ ++ N + +L W+ A T Y ++ D C
Sbjct: 30 LPAPQHPKIRLYNAEQVLSWEPVALSNS--TRPVVYRVQFKYTDSKWFTADIMSIGVNCT 87
Query: 328 SIILTECDFSSLSKYGDH------ILRVRAEFADEHSDWINIT-FCPVDDTIIGPP-GMQ 483
I TECDF++ S LR+RAE HS W+ + F + +GPP ++
Sbjct: 88 QITATECDFTAASPSAGFPMDFNVTLRLRAELGALHSAWVTMPWFQHYRNVTVGPPENIE 147
Query: 484 VEALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLR 663
V SL +RF +P + T + Y+V YW+ G ++ + + L
Sbjct: 148 VTPGEGSLIIRFSSPFDIADTST-------AFFCYYVHYWEKGGIQQVKGPFRSNSISLD 200
Query: 664 NLESSTTYCVQVRAFL----PDRNKTGEWSDPVCGQTTNDETT 780
NL+ S YC+QV+A L + + G S+ C +T D +T
Sbjct: 201 NLKPSRVYCLQVQAQLLWNKSNIFRVGHLSNISCYETMADAST 243
>gi|31317241|ref|NP_851826.1| (NM_181309) interleukin 22-binding
protein isoform 2; class II cytokine receptor;
interleukin 22-binding protein [Homo sapiens]
Length = 231
Score = 49.7 bits (117), Expect = 3e-06
Identities = 53/201 (26%), Positives = 79/201 (38%), Gaps = 15/201 (7%)
Frame = +1
Query: 196 PENVRMNSVNFKNILQWD-SPAFPQGDLTFTAQYHSYRQFQ----DQCVSIILTECDFSS 360
P+ V+ S NF NILQW A + QY Y Q Q + C CD +S
Sbjct: 31 PQRVQFQSRNFHNILQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTS 90
Query: 361 LSK------YGDHILRVRAEFADEHSDW-INITFCPVDDTIIGPPGMQVEALANSLHMRF 519
+ YG RVRA A +S+W + F P +T I PP M + + SL +
Sbjct: 91 ETSDIQEPYYG----RVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSLLVIL 146
Query: 520 LAPKI--ENEPETWTVRNIYNSWAYHVQYWKNGSD-EKFAVTAQYDFEVLRNLESSTTYC 690
AP + + E Y Y V N + E+ + + L ++YC
Sbjct: 147 HAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEGAHRAVEIEALTPHSSYC 206
Query: 691 VQVRAFLPDRNKTGEWSDPVC 753
V + P ++ + S+ C
Sbjct: 207 VVAEIYQPMLDRRSQRSEERC 227
>gi|4557880|ref|NP_000407.1| (NM_000416) interferon gamma receptor
1; Immune interferon, receptor for [Homo sapiens]
Length = 489
Score = 47.8 bits (112), Expect = 1e-05
Identities = 51/219 (23%), Positives = 86/219 (38%), Gaps = 30/219 (13%)
Frame = +1
Query: 187 VPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSY----RQFQDQCVSIILTECDF 354
VP P NV + S N I+ W+ PQ + FT + +Y ++ D C++I C+
Sbjct: 29 VPTPTNVTIESYNMNPIVYWEYQIMPQVPV-FTVEVKNYGVKNSEWIDACINISHHYCNI 87
Query: 355 SSLSKYGDHI--------LRVRAEFADEHSDWI-NITFCPVDDTIIGPPGMQVEALANSL 507
S DH+ +RV+A + S + + F D IGPP + + +
Sbjct: 88 S------DHVGDPSNSLWVRVKARVGQKESAYAKSEEFAVCRDGKIGPPKLDIRKEEKQI 141
Query: 508 HMRFLAP---------KIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFE-- 654
+ P +++ +PET +YN V NGS+ ++ + Q + +
Sbjct: 142 MIDIFHPSVFVNGDEQEVDYDPETTCYIRVYN-----VYVRMNGSEIQYKILTQKEDDCD 196
Query: 655 ------VLRNLESSTTYCVQVRAFLPDRNKTGEWSDPVC 753
+ ++ YCV L T E S VC
Sbjct: 197 EIQCQLAIPVSSLNSQYCVSAEGVLHVWGVTTEKSKEVC 235
>gi|16418459|ref|NP_443194.1| (NM_052962) interleukin 22-binding
protein isoform 1; class II cytokine receptor;
interleukin 22-binding protein [Homo sapiens]
Length = 263
Score = 40.8 bits (94), Expect = 0.001
Identities = 55/231 (23%), Positives = 83/231 (35%), Gaps = 45/231 (19%)
Frame = +1
Query: 196 PENVRMNSVNFKNILQWD---------SPAFPQGDLTFTAQYHSYRQFQDQCVSIILTEC 348
P+ V+ S NF NILQW S F Q + F+ S Q C I C
Sbjct: 31 PQRVQFQSRNFHNILQWQPGRALTGNSSVYFVQYKIMFSCSMKSSHQKPSGCWQHI--SC 88
Query: 349 DFS---SLSKYGD-----------------------------HILRVRAEFADEHSDW-I 429
+F +L+KYG + RVRA A +S+W +
Sbjct: 89 NFPGCRTLAKYGQRQWKNKEDCWGTQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSM 148
Query: 430 NITFCPVDDTIIGPPGMQVEALANSLHMRFLAPKI--ENEPETWTVRNIYNSWAYHVQYW 603
F P +T I PP M + + SL + AP + + E Y Y V
Sbjct: 149 TPRFTPWWETKIDPPVMNITQVNGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFII 208
Query: 604 KNGSD-EKFAVTAQYDFEVLRNLESSTTYCVQVRAFLPDRNKTGEWSDPVC 753
N + E+ + + L ++YCV + P ++ + S+ C
Sbjct: 209 NNSLEKEQKVYEGAHRAVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEERC 259
>gi|4504633|ref|NP_001549.1| (NM_001558) interleukin 10 receptor,
alpha precursor [Homo sapiens]
Length = 578
Score = 38.1 bits (87), Expect = 0.008
Identities = 49/216 (22%), Positives = 83/216 (37%), Gaps = 11/216 (5%)
Frame = +1
Query: 172 ALGMVVPPPENVRMNSVNFKNILQW-------DSPAFPQGDLTFTAQYHSYRQFQDQCVS 330
A G +P P +V + F +IL W +S + L + + + Q +S
Sbjct: 21 AHGTELPSPPSVWFEAEFFHHILHWTPIPNQSESTCYEVALLRYGIESWNSISNCSQTLS 80
Query: 331 IILTECDFSSLSKYGDHILRVRAEFADEHSDW-INITFCPVDDTIIGPPGMQVEALANSL 507
LT G + RVRA HS+W + T VD+ + + +E +
Sbjct: 81 YDLTAVTLDLYHSNG-YRARVRAVDGSRHSNWTVTNTRFSVDEVTLTVGSVNLEIHNGFI 139
Query: 508 HMRFLAPKIENEPETWTVRNIYNSWA-YHVQYWKNGSDEKFA--VTAQYDFEVLRNLESS 678
+ P+ + P T +I++ + Y + K + F +F +L + E
Sbjct: 140 LGKIQLPRPKMAPANDTYESIFSHFREYEIAIRKVPGNFTFTHKKVKHENFSLLTSGEVG 199
Query: 679 TTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETTPT 786
+CVQV+ + R+ G WS C T T T
Sbjct: 200 E-FCVQVKPSVASRSNKGMWSKEECISLTRQYFTVT 234
>gi|31317243|ref|NP_851827.1| (NM_181310) interleukin 22-binding
protein isoform 3; class II cytokine receptor;
interleukin 22-binding protein [Homo sapiens]
Length = 130
Score = 37.0 bits (84), Expect = 0.018
Identities = 29/88 (32%), Positives = 37/88 (41%), Gaps = 11/88 (12%)
Frame = +1
Query: 196 PENVRMNSVNFKNILQWD-SPAFPQGDLTFTAQYHSYRQFQ----DQCVSIILTECDFSS 360
P+ V+ S NF NILQW A + QY Y Q Q + C CD +S
Sbjct: 31 PQRVQFQSRNFHNILQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTS 90
Query: 361 LSK------YGDHILRVRAEFADEHSDW 426
+ YG RVRA A +S+W
Sbjct: 91 ETSDIQEPYYG----RVRAASAGSYSEW 114
>gi|12751477|ref|NP_075555.1| (NM_023067) forkhead box L2;
Blepharophimosis, epicanthus inversus, and ptosis 1;
blepharophimosis, epicanthus inversus and ptosis;
forkhead transcription factor FOXL2 [Homo sapiens]
Length = 376
Score = 34.3 bits (77), Expect = 0.12
Identities = 21/62 (33%), Positives = 23/62 (36%), Gaps = 4/62 (6%)
Frame = -3
Query: 189 HHHS*C*HXXXXXQPVPEAPRHGRTGSPGGPSGVPRAAAGHGEHAPSPASAP----ECTR 22
H H H P P P HG P G P + A AP+P SAP C R
Sbjct: 291 HPHPHAHHLHAAAAPPPAPPHHGAAAPPPGQLS-PASPATAAPPAPAPTSAPGLQFACAR 349
Query: 21 PP 16
P
Sbjct: 350 QP 351
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 10,046,356
Number of sequences in database: 19,244
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19513928
Number of Sequences: 19244
Number of extensions: 552333
Number of successful extensions: 3833
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 2288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3752
length of query: 286
length of database: 10,046,356
effective HSP length: 47
effective length of query: 239
effective length of database: 9,141,888
effective search space: 2184911232
effective search space used: 2184911232
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search to RefSeq (Mouse) database
Query= 20030531C-001710 (20030531C-001710) 20030531C-001710
(860 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
15,330 sequences; 7,155,815 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|6680391|ref|NP_032375.1| (NM_008349) interleukin 10 receptor... 346 8e-96
Alignment gi|6754302|ref|NP_034638.1| (NM_010508) interferon (alpha and b... 82 3e-16
Alignment gi|27370160|ref|NP_766374.1| (NM_172786) hypothetical protein E... 77 9e-15
Alignment gi|30142711|ref|NP_839989.1| (NM_178258) interleukin 22 soluble... 50 1e-06
Alignment gi|6680373|ref|NP_032364.1| (NM_008338) interferon gamma recept... 49 3e-06
Alignment gi|30142709|ref|NP_839988.1| (NM_178257) interleukin-22 recepto... 36 0.022
Alignment gi|6679207|ref|NP_032805.1| (NM_008779) contactin 3; plasmacyto... 35 0.037
Alignment gi|22779928|ref|NP_036150.1| (NM_012020) forkhead box L2; pitui... 34 0.083
Alignment gi|27807307|ref|NP_777276.1| (NM_174851) interleukin 28 recepto... 34 0.11
Alignment gi|31542014|ref|NP_084210.2| (NM_029934) RIKEN cDNA 5730589L02 ... 33 0.18
>gi|6680391|ref|NP_032375.1| (NM_008349) interleukin 10 receptor,
beta [Mus musculus]
Length = 349
Score = 346 bits (888), Expect = 8e-96
Identities = 157/223 (70%), Positives = 187/223 (83%)
Frame = +1
Query: 124 MARSLRNWLGGCLLVSALGMVVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSY 303
MA + WLGG LLV ALGM+ PPPE VRMNSVNFKNILQW+ PAFP+ +LTFTAQY SY
Sbjct: 1 MAPCVAGWLGGFLLVPALGMI-PPPEKVRMNSVNFKNILQWEVPAFPKTNLTFTAQYESY 59
Query: 304 RQFQDQCVSIILTECDFSSLSKYGDHILRVRAEFADEHSDWINITFCPVDDTIIGPPGMQ 483
R FQD C T+CDFS LSKYGD+ +RVRAE ADEHS+W+N+TFCPV+DTIIGPP MQ
Sbjct: 60 RSFQDHCKRTASTQCDFSHLSKYGDYTVRVRAELADEHSEWVNVTFCPVEDTIIGPPEMQ 119
Query: 484 VEALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLR 663
+E+LA SLH+RF AP+IENEPETWT++NIY+SWAY VQYWKNG++EKF V + YD EVLR
Sbjct: 120 IESLAESLHLRFSAPQIENEPETWTLKNIYDSWAYRVQYWKNGTNEKFQVVSPYDSEVLR 179
Query: 664 NLESSTTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETTPTWI 792
NLE TTYC+QV+ FL D+N+TGEWS+P+C +T NDE TP+WI
Sbjct: 180 NLEPWTTYCIQVQGFLLDQNRTGEWSEPICERTGNDEITPSWI 222
>gi|6754302|ref|NP_034638.1| (NM_010508) interferon (alpha and beta)
receptor 1; interferon (alpha and beta) receptor; INF-a
receptor [Mus musculus]
Length = 590
Score = 82.4 bits (202), Expect = 3e-16
Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 7/206 (3%)
Frame = +1
Query: 169 SALGMVVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSYRQFQ----DQCVSII 336
+A G + PPEN+ + ++ L+W S G +TF+A+Y + + + +C
Sbjct: 23 AAGGENLKPPENIDVYIIDDNYTLKWSSHGESMGSVTFSAEYRTKDEAKWLKVPECQHTT 82
Query: 337 LTECDFSSLSK--YGDHILRVRAEFADEHSDWINIT-FCPVDDTIIGPPGMQVEALANSL 507
T+C+FS L Y RVRAE + S W + F P + PP +++EA ++
Sbjct: 83 TTKCEFSLLDTNVYIKTQFRVRAEEGNSTSSWNEVDPFIPFYTAHMSPPEVRLEAEDKAI 142
Query: 508 HMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRNLESSTTY 687
+ P + W + S++Y ++ W+ S +K + + Y E + L TTY
Sbjct: 143 LVHISPPG--QDGNMWALEK--PSFSYTIRIWQKSSSDKKTINSTYYVEKIPELLPETTY 198
Query: 688 CVQVRAFLPDRNKTGEWSDPVCGQTT 765
C++V+A P K +S C TT
Sbjct: 199 CLEVKAIHPSLKKHSNYSTVQCISTT 224
Score = 61.6 bits (148), Expect = 5e-10
Identities = 57/217 (26%), Positives = 95/217 (43%), Gaps = 15/217 (6%)
Frame = +1
Query: 187 VPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQY------HSYRQFQDQ------CVS 330
+P P N+++++ +L+WD A D+ F AQ+ S D+ C +
Sbjct: 229 MPVPGNLQVDAQGKSYVLKWDYIA--SADVLFRAQWLPGYSKSSSGSHSDKWKPIPTCAN 286
Query: 331 IILTECDFSSLSKY-GDHILRVRAEFADEHSDWINITFCPVDDTIIGPPGM-QVEALANS 504
+ T C FS + Y G L V+A + S W F I+ PP + V A++++
Sbjct: 287 VQTTHCVFSQDTVYTGTFFLHVQASEGNHTSFWSEEKFIDSQKHILPPPPVITVTAMSDT 346
Query: 505 LHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRNLESSTT 684
L + + + T N Y + +W+N S+ K ++ L+NL+ T
Sbjct: 347 LLVY-----VNCQDSTCDGLN------YEIIFWENTSNTKISMEKDGPEFTLKNLQPLTV 395
Query: 685 YCVQVRA-FLPDRNKTGEWSDPVCGQTTNDETTPTWI 792
YCVQ R F NKT +S+ +C +T + WI
Sbjct: 396 YCVQARVLFRALLNKTSNFSEKLCEKTRPGSFSTIWI 432
>gi|27370160|ref|NP_766374.1| (NM_172786) hypothetical protein
E230031K19 [Mus musculus]
Length = 546
Score = 77.4 bits (189), Expect = 9e-15
Identities = 65/225 (28%), Positives = 102/225 (44%), Gaps = 18/225 (8%)
Frame = +1
Query: 160 LLVSALGMVVP-------PPENVRMNSVNFKNILQWDSPAFPQG-DLTFTAQYHSYRQFQ 315
LL++A G VP P N+ S+N KN+L W+ P G ++T+T QY Y Q +
Sbjct: 24 LLLAASGRAVPCVFCGLPKPTNITFLSINMKNVLHWNPPESLHGVEVTYTVQYFIYGQKK 83
Query: 316 ----DQCVSIILTECDFSSLSKYGDH--ILRVRAEFADEHSDWINIT-FCPVDDTIIGPP 474
+C SI T CD S + +H +V+A + S+W F P +T + PP
Sbjct: 84 WLNASKCGSINRTYCDLSVETSDYEHQFYAKVKAIWEARCSEWAETERFYPFLETQVSPP 143
Query: 475 GMQVEALANSLHMRFLAP-KIENEPETWTV--RNIYNSWAYHVQYWKNGSDEKFAVTAQY 645
+ + S+ + AP K + P+ TV + IY + Y+V + S ++
Sbjct: 144 EVALTTGEKSISIALTAPEKWKRNPQDHTVSMQQIYPNLKYNVSVYNTKSRRTWSQCVTN 203
Query: 646 DFEVLRNLESSTTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETT 780
VL LE +T YCV V + +P + S C T +T+
Sbjct: 204 STLVLSWLEPNTLYCVHVESLVPGPPRLPMPSQKQCISTLEVQTS 248
>gi|30142711|ref|NP_839989.1| (NM_178258) interleukin 22 soluble
receptor [Mus musculus]
Length = 230
Score = 50.1 bits (118), Expect = 1e-06
Identities = 50/199 (25%), Positives = 78/199 (39%), Gaps = 11/199 (5%)
Frame = +1
Query: 196 PENVRMNSVNFKNILQWDS-PAFPQGDLTFTAQYHSYRQFQDQ----CVSIILTECDFS- 357
P+ VR S NF NIL W + + P + + QY Y Q Q + C CD +
Sbjct: 30 PQKVRFQSRNFHNILHWQAGSSLPSNNSIYFVQYKMYGQSQWEDKVDCWGTTALFCDLTN 89
Query: 358 -SLSKYGDHILRVRAEFADEHSDWINI-TFCPVDDTIIGPPGMQVEALANSLHMRFLAPK 531
+L Y + RV A HS W F P +T + PP + + + SL + P
Sbjct: 90 ETLDPYELYYGRVMTACAGRHSAWTRTPRFTPWWETKLDPPVVTITRVNASLRVLLRPPD 149
Query: 532 IENEPETWTVRNI--YNSWAYHVQYWKNGSD-EKFAVTAQYDFEVLRNLESSTTYCVQVR 702
+ N ++ ++ Y Y V N + E+ A + L ++YCV
Sbjct: 150 LPNRNQSGKNASMETYYGLVYRVFTINNSLEKEQKAYEGTQRAVEIEGLIPHSSYCVVAE 209
Query: 703 AFLPDRNKTGEWSDPVCGQ 759
+ P ++ S C Q
Sbjct: 210 MYQPMFDRRSPRSKERCVQ 228
>gi|6680373|ref|NP_032364.1| (NM_008338) interferon gamma receptor 2
[Mus musculus]
Length = 332
Score = 48.9 bits (115), Expect = 3e-06
Identities = 64/243 (26%), Positives = 97/243 (39%), Gaps = 31/243 (12%)
Frame = +1
Query: 130 RSLRNWLGGCLLVSALGMVVPPPE---------NVRMNSVNFKNILQWDSPAFPQGD--- 273
R L WL LL+ LG P+ N R++ N + IL W+ P+ D
Sbjct: 2 RPLPLWLPS-LLLCGLGAAASSPDSFSQLAAPLNPRLHLYNDEQILTWE-PSPSSNDPRP 59
Query: 274 LTFTAQYHS-----YRQFQDQCVSIILTECDFSSLS--KYGDH----ILRVRAEFADEHS 420
+ + +Y +R + C I T+CD + K H LRVRA+ + S
Sbjct: 60 VVYQVEYSFIDGSWHRLLEPNCTDITETKCDLTGGGRLKLFPHPFTVFLRVRAKRGNLTS 119
Query: 421 DWINIT-FCPVDDTIIGPP-GMQVEALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHV 594
W+ + F ++ +GPP + V SL + F P T+ Y V
Sbjct: 120 KWVGLEPFQHYENVTVGPPKNISVTPGKGSLVIHFSPPFDVFHGATFQ---------YLV 170
Query: 595 QYWKNGSDEKFAVTAQYDFE--VLRNLESSTTYCVQVRAFLPDRNKT----GEWSDPVCG 756
YW+ ++ V + VL NL+ YC+Q A L +NK G S+ C
Sbjct: 171 HYWEKSETQQEQVEGPFKSNSIVLGNLKPYRVYCLQTEAQLILKNKKIRPHGLLSNVSCH 230
Query: 757 QTT 765
+TT
Sbjct: 231 ETT 233
>gi|30142709|ref|NP_839988.1| (NM_178257) interleukin-22 receptor
alpha chain [Mus musculus]
Length = 581
Score = 36.2 bits (82), Expect = 0.022
Identities = 45/209 (21%), Positives = 80/209 (37%), Gaps = 15/209 (7%)
Frame = +1
Query: 199 ENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSYRQ----FQDQCVSIILTECDFSSLS 366
++V+ S NF+NIL WD D ++ +Y Y + + C I C+ + +
Sbjct: 26 QHVKFQSSNFENILTWDGGPASTSDTVYSVEYKKYGERKWLAKAGCQRITQKFCNLTMET 85
Query: 367 K-----YGDHILRVRA------EFADEHSDWINITFCPVDDTIIGPPGMQVEALANSLHM 513
+ Y + V A + D S + T P D T I P ++ L +
Sbjct: 86 RNHTEFYYAKVTAVSAGGPPVTKMTDRFSSLQHTTIKPPDVTCI-PKVRSIQMLVHPT-- 142
Query: 514 RFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRNLESSTTYCV 693
L P + + T+ I++ Y ++ N + + Q ++E L L T +
Sbjct: 143 --LTPVLSEDGHQLTLEEIFHDLFYRLELHVNHTYQMHLEGKQREYEFL-GLTPDTEFLG 199
Query: 694 QVRAFLPDRNKTGEWSDPVCGQTTNDETT 780
+ P +K E + VC T + T
Sbjct: 200 SITILTPILSK--ESAPYVCRVKTLPDRT 226
>gi|6679207|ref|NP_032805.1| (NM_008779) contactin 3;
plasmacytoma-associated neuronal glycoprotein [Mus
musculus]
Length = 1028
Score = 35.4 bits (80), Expect = 0.037
Identities = 23/71 (32%), Positives = 30/71 (41%), Gaps = 4/71 (5%)
Frame = +1
Query: 586 YHVQYWKNGSDE----KFAVTAQYDFEVLRNLESSTTYCVQVRAFLPDRNKTGEWSDPVC 753
Y V+YW NG +E K V VLR L+S+ Y VRA+ N G
Sbjct: 838 YEVRYWNNGGEEESSRKVKVAGNQTSAVLRGLKSNLAYYTAVRAY----NSAGAGPFSAT 893
Query: 754 GQTTNDETTPT 786
T +T P+
Sbjct: 894 VNATTKKTPPS 904
>gi|22779928|ref|NP_036150.1| (NM_012020) forkhead box L2; pituitary
forkhead factor [Mus musculus]
Length = 375
Score = 34.3 bits (77), Expect = 0.083
Identities = 21/62 (33%), Positives = 23/62 (36%), Gaps = 4/62 (6%)
Frame = -3
Query: 189 HHHS*C*HXXXXXQPVPEAPRHGRTGSPGGPSGVPRAAAGHGEHAPSPASAP----ECTR 22
H H H P P P HG P G P + A AP+P SAP C R
Sbjct: 290 HPHPHAHHLHAAAAPPPAPPHHGAAAPPPGQLS-PASPATAAPPAPAPTSAPGLQFACAR 348
Query: 21 PP 16
P
Sbjct: 349 QP 350
>gi|27807307|ref|NP_777276.1| (NM_174851) interleukin 28 receptor
alpha; class II cytokine receptor 12; interferon-lambda
receptor 1 [Mus musculus]
Length = 535
Score = 33.9 bits (76), Expect = 0.11
Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 9/164 (5%)
Frame = +1
Query: 160 LLVSALGMV-VPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSYRQF----QDQC 324
LL SALG + PP NV + S NF L W ++T+ Y SY + + C
Sbjct: 14 LLQSALGRPRLAPPRNVTLFSQNFTVYLTWLPGLGSPPNVTYFVTYQSYIKTGWRPVEHC 73
Query: 325 VSIILTECDFSSLSK---YGDHILRVRAEFADEHSDWINITFCP-VDDTIIGPPGMQVEA 492
I C L K Y RV+A A S + + + D + PP + +
Sbjct: 74 AGIKALVCPLMCLKKLNLYSKFKGRVQAASAHGRSPRVESRYLEYLFDVELAPPTLVLTQ 133
Query: 493 LANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEK 624
+ L + P Y V++WK G K
Sbjct: 134 MEKILRVNATYQLPPCMPSL--------ELKYQVEFWKEGLGSK 169
>gi|31542014|ref|NP_084210.2| (NM_029934) RIKEN cDNA 5730589L02 [Mus
musculus]
Length = 473
Score = 33.1 bits (74), Expect = 0.18
Identities = 15/43 (34%), Positives = 26/43 (59%), Gaps = 1/43 (2%)
Frame = +1
Query: 613 SDEKFAVTAQYDFEVLRNLES-STTYCVQVRAFLPDRNKTGEW 738
S + A + +YD+E +RN++ T +CV+VR + N T +W
Sbjct: 284 SSPEIAASLEYDYETIRNIDCYGTDFCVRVRDGMRYWNMTVQW 326
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 7,155,815
Number of sequences in database: 15,330
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13649637
Number of Sequences: 15330
Number of extensions: 372590
Number of successful extensions: 2133
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2094
length of query: 286
length of database: 7,155,815
effective HSP length: 47
effective length of query: 239
effective length of database: 6,435,305
effective search space: 1538037895
effective search space used: 1538037895
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)