Search to RefSeq (Human) database
Query= 20030531C-002067 (20030531C-002067) 20030531C-002067
(1586 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,244 sequences; 10,046,356 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|28466991|ref|NP_775771.2| (NM_173500) tau tubulin kinase 2; ... 37 0.047
Alignment gi|7705258|ref|NP_057295.1| (NM_016211) yeast Sec31p homolog [H... 36 0.062
Alignment gi|7662370|ref|NP_055748.1| (NM_014933) yeast Sec31p homolog [H... 36 0.062
Alignment gi|31542841|ref|NP_689870.2| (NM_152657) gametogenetin [Homo sa... 35 0.11
Alignment gi|5803098|ref|NP_006757.1| (NM_006766) MYST histone acetyltran... 35 0.11
Alignment gi|5453674|ref|NP_003909.1| (NM_003918) glycogenin 2 [Homo sapi... 35 0.11
Alignment gi|21245100|ref|NP_116110.2| (NM_032721) T-cell activation NFKB... 35 0.14
Alignment gi|7669504|ref|NP_002421.2| (NM_002430) meningioma 1; meningio... 35 0.18
Alignment gi|7019337|ref|NP_037531.1| (NM_013399) chromosome 16 open read... 34 0.23
Alignment gi|4503821|ref|NP_001456.1| (NM_001465) FYN binding protein (FY... 34 0.23
>gi|28466991|ref|NP_775771.2| (NM_173500) tau tubulin kinase 2;
tau-tubulin kinase [Homo sapiens]
Length = 1649
Score = 36.6 bits (83), Expect = 0.047
Identities = 19/60 (31%), Positives = 26/60 (42%), Gaps = 2/60 (3%)
Frame = +2
Query: 239 CPSPGHPNQPVLDPPDRAPPH--PHSLSHTQVLPSLLAELPSRPGFPRMEPNISQPHVSQ 412
C SPG P+ P P P P + + LP + PSR G P + S PH+ +
Sbjct: 1533 CKSPGSPHNPKTPPKSPVVPRRSPSASPRSSSLPRTSSSSPSRAGRPHHDQRSSSPHLGR 1592
>gi|7705258|ref|NP_057295.1| (NM_016211) yeast Sec31p homolog [Homo
sapiens]
Length = 1181
Score = 36.2 bits (82), Expect = 0.062
Identities = 24/72 (33%), Positives = 31/72 (42%), Gaps = 11/72 (15%)
Frame = +2
Query: 242 PSPGHPNQPVLD-----PPDRAPPHPHSLSHTQVLPSLLAELPSRPGF------PRMEPN 388
P GH P + P PP P + H V P+ +LP+ PG P +P
Sbjct: 777 PVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNASGQLPTSPGHMHTQVPPYPQPQ 836
Query: 389 ISQPHVSQPYPF 424
QP +QPYPF
Sbjct: 837 PYQP--AQPYPF 846
>gi|7662370|ref|NP_055748.1| (NM_014933) yeast Sec31p homolog [Homo
sapiens]
Length = 1220
Score = 36.2 bits (82), Expect = 0.062
Identities = 24/72 (33%), Positives = 31/72 (42%), Gaps = 11/72 (15%)
Frame = +2
Query: 242 PSPGHPNQPVLD-----PPDRAPPHPHSLSHTQVLPSLLAELPSRPGF------PRMEPN 388
P GH P + P PP P + H V P+ +LP+ PG P +P
Sbjct: 816 PVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNASGQLPTSPGHMHTQVPPYPQPQ 875
Query: 389 ISQPHVSQPYPF 424
QP +QPYPF
Sbjct: 876 PYQP--AQPYPF 885
>gi|31542841|ref|NP_689870.2| (NM_152657) gametogenetin [Homo
sapiens]
Length = 652
Score = 35.4 bits (80), Expect = 0.11
Identities = 26/78 (33%), Positives = 31/78 (39%)
Frame = +2
Query: 209 PPERGEGQNACPSPGHPNQPVLDPPDRAPPHPHSLSHTQVLPSLLAELPSRPGFPRMEPN 388
PP E ++ P P P +L PP P P + + P L ELP P P P
Sbjct: 390 PPPPPEQIHSAPGPRRPAPALLAPPTFIFPAPTNGEPMRPGPPGLQELPPLP--PPTPPP 447
Query: 389 ISQPHVSQPYPFSFPPCL 442
QP QP P P L
Sbjct: 448 TLQPPALQPTPLPVAPPL 465
>gi|5803098|ref|NP_006757.1| (NM_006766) MYST histone
acetyltransferase (monocytic leukemia) 3; Monocytic
leukemia zinc finger protein; zinc finger protein 220;
runt-related transcription factor binding protein 2 [Homo
sapiens]
Length = 2004
Score = 35.4 bits (80), Expect = 0.11
Identities = 28/98 (28%), Positives = 39/98 (39%)
Frame = +2
Query: 206 QPPERGEGQNACPSPGHPNQPVLDPPDRAPPHPHSLSHTQVLPSLLAELPSRPGFPRMEP 385
+PP + Q P P P QP P AP P Q P + P P P+ +P
Sbjct: 1642 RPPSNQQQQPPPPPPQQP-QPPPPQPQPAPQPPPPQQQPQQQPQPQPQQPPPPPPPQQQP 1700
Query: 386 NISQPHVSQPYPFSFPPCLLFQDPSYYHLLQSDSVGNV 499
+SQ ++ SF P P + +S S GN+
Sbjct: 1701 PLSQCSMNN----SFTPA-----PMIMEIPESGSTGNI 1729
>gi|5453674|ref|NP_003909.1| (NM_003918) glycogenin 2 [Homo sapiens]
Length = 501
Score = 35.4 bits (80), Expect = 0.11
Identities = 26/98 (26%), Positives = 41/98 (41%)
Frame = +2
Query: 107 VDSADSPRGEDHNPARGVKSATSYLPQEQWLALQPPERGEGQNACPSPGHPNQPVLDPPD 286
V A+SP G + PA+G+ T + ++ L+L R E ACP P DP
Sbjct: 340 VPCANSPLGSNQ-PAQGLPEPTQIV--DETLSLPEGRRSEDMIACPETETPAVITCDPLS 396
Query: 287 RAPPHPHSLSHTQVLPSLLAELPSRPGFPRMEPNISQP 400
+ P P + T+ + ++ S EP+ P
Sbjct: 397 QPSPQPADFTETETILQPANKVESVSSEETFEPSQELP 434
>gi|21245100|ref|NP_116110.2| (NM_032721) T-cell activation
NFKB-like protein [Homo sapiens]
Length = 465
Score = 35.0 bits (79), Expect = 0.14
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 2/115 (1%)
Frame = +2
Query: 128 RGE-DHNPARGVKSATSYLPQEQWLALQPPERGEGQNACPSPGHPNQPVLDPPDRAPP-H 301
RGE H P + VK L +++ Q P+ G Q P P QP+ + A H
Sbjct: 33 RGERSHCPTQTVKKL---LEEQRRRQQQQPDAGGVQGQFLPP--PEQPLTPSVNEAVTGH 87
Query: 302 PHSLSHTQVLPSLLAELPSRPGFPRMEPNISQPHVSQPYPFSFPPCLLFQDPSYY 466
P +H++ + S PS GFP +PN + PY F P +Y
Sbjct: 88 PPFPAHSETVGSG----PSSLGFPDWDPNTHAAYTDSPYSCPASAAENFLPPDFY 138
>gi|7669504|ref|NP_002421.2| (NM_002430) meningioma 1; meningioma
(translocation balanced) [Homo sapiens]
Length = 1319
Score = 34.7 bits (78), Expect = 0.18
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +2
Query: 203 LQPPERGEGQNACPSPGHPNQPVLDPPDRAPPHPHSLSHTQVLPSLLAELPS-RPGFPRM 379
+QPP++ P P P P + PP P L LP+ P+ R G +
Sbjct: 338 MQPPQQA------PPPPQQQPPQQPPQQQPPPPPGLLVRQNSLPACAPSAPAGRGGHAQR 391
Query: 380 EPNISQPHVSQP 415
P +PH +QP
Sbjct: 392 RPAGRRPHAAQP 403
>gi|7019337|ref|NP_037531.1| (NM_013399) chromosome 16 open reading
frame 5 [Homo sapiens]
Length = 261
Score = 34.3 bits (77), Expect = 0.23
Identities = 21/65 (32%), Positives = 26/65 (39%), Gaps = 9/65 (13%)
Frame = +2
Query: 242 PSPGHPNQPVLDPPDRAPPHPHSLSHTQVLPSLLAELP---------SRPGFPRMEPNIS 394
P PG P P+L+ APP P S + P LP PG P +P
Sbjct: 8 PYPGGPTAPLLEEKSGAPPTPGRSSPAVMQPPPGMPLPPADIGPPPYEPPGHPMPQPGFI 67
Query: 395 QPHVS 409
PH+S
Sbjct: 68 PPHMS 72
>gi|4503821|ref|NP_001456.1| (NM_001465) FYN binding protein
(FYB-120/130); FYN-binding protein (FYB-120/130) [Homo
sapiens]
Length = 783
Score = 34.3 bits (77), Expect = 0.23
Identities = 32/113 (28%), Positives = 42/113 (36%), Gaps = 16/113 (14%)
Frame = +2
Query: 146 PARGVKSATSYLPQEQWLALQPPERGEGQNACPSPGHPNQPV--LDPPDRAPPHP----- 304
PAR K+ + W Q E+G+ +A P P P+ L PP P P
Sbjct: 310 PARFPKAPSKLTVGGPWGQSQEKEKGDKNSATPKQ-KPLPPLFTLGPPPPKPNRPPNVDL 368
Query: 305 ---------HSLSHTQVLPSLLAELPSRPGFPRMEPNISQPHVSQPYPFSFPP 436
+S S Q S + P P P +P + H SQP S PP
Sbjct: 369 TKFHKTSSGNSTSKGQTSYSTTSLPPPPPSHPASQPPLPASHPSQPPVPSLPP 421
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 10,046,356
Number of sequences in database: 19,244
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33608832
Number of Sequences: 19244
Number of extensions: 855842
Number of successful extensions: 3085
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 186
Number of HSP's that attempted gapping in prelim test: 954
Number of HSP's gapped (non-prelim): 2228
length of query: 528
length of database: 10,046,356
effective HSP length: 49
effective length of query: 479
effective length of database: 9,103,400
effective search space: 4360528600
effective search space used: 4360528600
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search to RefSeq (Mouse) database
Query= 20030531C-002067 (20030531C-002067) 20030531C-002067
(1586 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
15,330 sequences; 7,155,815 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|29336032|ref|NP_081746.1| (NM_027470) p21-activated protein ... 40 0.002
Alignment gi|6680736|ref|NP_031522.1| (NM_007496) AT motif binding factor... 34 0.17
Alignment gi|6754676|ref|NP_034919.1| (NM_010789) myeloid ecotropic viral... 34 0.17
Alignment gi|11967967|ref|NP_071880.1| (NM_022435) trans-acting transcrip... 34 0.22
Alignment gi|6680524|ref|NP_032448.1| (NM_008422) potassium voltage gated... 34 0.22
Alignment gi|31560788|ref|NP_065254.2| (NM_020508) bromodomain containing... 33 0.37
Alignment gi|23956214|ref|NP_076092.1| (NM_023603) splicing factor prolin... 33 0.37
Alignment gi|23346579|ref|NP_694778.1| (NM_153138) Wiskott-Aldrich syndro... 33 0.48
Alignment gi|6681183|ref|NP_031884.1| (NM_007858) diaphanous homolog 1 [M... 33 0.48
Alignment gi|6806911|ref|NP_034360.1| (NM_010230) formin; limb deformity ... 33 0.48
>gi|29336032|ref|NP_081746.1| (NM_027470) p21-activated protein
kinase 4 [Mus musculus]
Length = 593
Score = 40.4 bits (93), Expect = 0.002
Identities = 39/116 (33%), Positives = 48/116 (40%), Gaps = 25/116 (21%)
Frame = +2
Query: 104 RVDSADSPRG---EDHNPARGVKSATSYLPQEQWLALQPPERGEGQNACPSPG----HPN 262
R D+ PRG E H A SAT + + +PP R G PSPG H +
Sbjct: 210 RADTDHPPRGAQGEPHTMAPNGPSATGLAAPQSSSSSRPPTRARG---APSPGVLGPHAS 266
Query: 263 QPVLDPPDRA-----------PPHPHS-------LSHTQVLPSLLAELPSRPGFPR 376
+P L PP RA PP P S +SH Q +L +L PG PR
Sbjct: 267 EPQLAPPARALAAPAVPPAPGPPGPRSPQREPQRVSHEQFRAAL--QLVVDPGDPR 320
>gi|6680736|ref|NP_031522.1| (NM_007496) AT motif binding factor 1
[Mus musculus]
Length = 3726
Score = 34.3 bits (77), Expect = 0.17
Identities = 34/144 (23%), Positives = 54/144 (36%), Gaps = 6/144 (4%)
Frame = +2
Query: 74 FHSLGGAAV*RVDSADSPRGEDHNPARGVKSATSYLPQEQWLALQPPERGEGQNACPSPG 253
F+S A+ + AD P + + K +Q L + Q P P
Sbjct: 2428 FNSKAEASDEKPKQADPPSAQPNQTQE--KQGQPKPEMQQQLEQLEQKTNAPQPKLPQPA 2485
Query: 254 HPNQPVLDPPDRAPPHPHSLSHTQVLPSLLAELPSRP---GFPRMEPNISQ---PHVSQP 415
P+ P PP +APP L + PS L+ LP +P P+ N+ P+
Sbjct: 2486 APSLP--QPPPQAPPPQCPLPQSSPSPSQLSHLPLKPLHTSTPQQLANLPPQLIPYQCDQ 2543
Query: 416 YPFSFPPCLLFQDPSYYHLLQSDS 487
+FP +Q+ H L + +
Sbjct: 2544 CKLAFPSFEHWQEHQQLHFLSAQN 2567
>gi|6754676|ref|NP_034919.1| (NM_010789) myeloid ecotropic viral
integration site 1 [Mus musculus]
Length = 465
Score = 34.3 bits (77), Expect = 0.17
Identities = 19/56 (33%), Positives = 24/56 (41%)
Frame = +2
Query: 293 PPHPHSLSHTQVLPSLLAELPSRPGFPRMEPNISQPHVSQPYPFSFPPCLLFQDPS 460
PPHP L H P + +P P P + + QPH P S P L DP+
Sbjct: 402 PPHPAQLRHG---PPMHTYIPGHPHHPAVMMHGGQPHPGMPMSASSPSVLNTGDPT 454
>gi|11967967|ref|NP_071880.1| (NM_022435) trans-acting transcription
factor 5 [Mus musculus]
Length = 398
Score = 33.9 bits (76), Expect = 0.22
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Frame = +2
Query: 143 NPARGVKSATSYLPQEQWLALQPPERGEG-----QNACPSPGHPNQPVLDPPDRAPPHPH 307
+P+R T+ +P AL PP G + PS G ++ L PP P +P+
Sbjct: 65 SPSRLFHPWTADMPAHSPGALPPPHPSLGLTPQKTHLQPSFGAAHELPLTPP-ADPSYPY 123
Query: 308 SLSHTQVLPSLLAELPSRPGFPRMEPNISQPHVSQPYPFSFPP 436
S ++LPS +A LP+ P P +Q + Y PP
Sbjct: 124 EFSPVKMLPSSMAALPASCA-PAYVPYAAQAALPPGYSNLLPP 165
>gi|6680524|ref|NP_032448.1| (NM_008422) potassium voltage gated
channel, Shaw-related subfamily, member 3 [Mus musculus]
Length = 679
Score = 33.9 bits (76), Expect = 0.22
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +2
Query: 242 PSPGHPNQPVLDPPDRAPPHPH 307
P PG PN DPP PPHPH
Sbjct: 489 PQPGSPNYCKPDPPPPPPPHPH 510
>gi|31560788|ref|NP_065254.2| (NM_020508) bromodomain containing 4;
bromodomain-containing 5; bromodomain-containing 4 [Mus
musculus]
Length = 1400
Score = 33.1 bits (74), Expect = 0.37
Identities = 30/100 (30%), Positives = 40/100 (40%)
Frame = +2
Query: 134 EDHNPARGVKSATSYLPQEQWLALQPPERGEGQNACPSPGHPNQPVLDPPDRAPPHPHSL 313
++ PA + S L +Q +QPP PS +QP PP PPHP S+
Sbjct: 917 DEEPPAPPLTSMQMQLYLQQLQKVQPPTP-----LLPSVKVQSQP--PPPLPPPPHP-SV 968
Query: 314 SHTQVLPSLLAELPSRPGFPRMEPNISQPHVSQPYPFSFP 433
Q+ P P P P+ +P Q H P P P
Sbjct: 969 QQQQLQPQ-----PPPPPPPQPQPPPQQQHQPPPRPVHLP 1003
>gi|23956214|ref|NP_076092.1| (NM_023603) splicing factor
proline/glutamine rich (polypyrimidine tract binding
protein associated); DNA segment, Chr 4, ERATO Doi 314,
expressed [Mus musculus]
Length = 699
Score = 33.1 bits (74), Expect = 0.37
Identities = 24/72 (33%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Frame = +2
Query: 209 PPERGEGQNACPSPGHPNQPVLDPPDRAPPHPHSLSHTQVLPSLLAELPSRPGFPRMEPN 388
PP Q P P P P PP P PH H Q P P P P P
Sbjct: 59 PPPPPHQQQQQPPPQQP--PPQQPPPHQQPPPHQPPHQQPPPPPQESKPVVPQGPGSAPG 116
Query: 389 ISQ---PHVSQP 415
+S P VS P
Sbjct: 117 VSSAPPPAVSAP 128
>gi|23346579|ref|NP_694778.1| (NM_153138) Wiskott-Aldrich syndrome
protein interacting protein; WASP interacting protein;
DNA segment, Chr 2, ERATO Doi 120, expressed [Mus
musculus]
Length = 493
Score = 32.7 bits (73), Expect = 0.48
Identities = 22/60 (36%), Positives = 26/60 (42%), Gaps = 1/60 (1%)
Frame = +2
Query: 212 PERGEGQNACPSPGHPNQPVLDPPDR-APPHPHSLSHTQVLPSLLAELPSRPGFPRMEPN 388
P G G+ PSPGH + P P +R PP P S LP P P PR P+
Sbjct: 144 PPSGPGRFPAPSPGHRSGPPEPPRNRMPPPRPDVGSKPDSLP------PPVPNTPRPVPS 197
>gi|6681183|ref|NP_031884.1| (NM_007858) diaphanous homolog 1 [Mus
musculus]
Length = 1255
Score = 32.7 bits (73), Expect = 0.48
Identities = 31/102 (30%), Positives = 33/102 (31%), Gaps = 7/102 (6%)
Frame = +2
Query: 146 PARGVKSATSYLPQEQWLALQPPERGEGQNACPSP-------GHPNQPVLDPPDRAPPHP 304
P GV S P A+ PP G A P P G P P P P P
Sbjct: 640 PLPGVASIPPPPPLPGATAIPPPPPLPGATAIPPPPPLPGGTGIPPPPPPLPGSVGVPPP 699
Query: 305 HSLSHTQVLPSLLAELPSRPGFPRMEPNISQPHVSQPYPFSF 430
L LP P PG P P + P P PF F
Sbjct: 700 PPLPGGPGLPPPPPPFPGAPGIPPPPPGMGVP---PPPPFGF 738
>gi|6806911|ref|NP_034360.1| (NM_010230) formin; limb deformity [Mus
musculus]
Length = 1468
Score = 32.7 bits (73), Expect = 0.48
Identities = 23/69 (33%), Positives = 24/69 (34%)
Frame = +2
Query: 230 QNACPSPGHPNQPVLDPPDRAPPHPHSLSHTQVLPSLLAELPSRPGFPRMEPNISQPHVS 409
Q P P P L PP PP P LP L LP P P + P P
Sbjct: 865 QQKISPPAPPTPPPLPPPLIPPPPP--------LPPGLGPLPPAPPIPPVCPVSPPPPPP 916
Query: 410 QPYPFSFPP 436
P P PP
Sbjct: 917 PPPPTPVPP 925
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 7,155,815
Number of sequences in database: 15,330
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23773756
Number of Sequences: 15330
Number of extensions: 595837
Number of successful extensions: 2057
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 1695
length of query: 528
length of database: 7,155,815
effective HSP length: 47
effective length of query: 481
effective length of database: 6,435,305
effective search space: 3095381705
effective search space used: 3095381705
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)