Search to RefSeq (Human) database
Query= 20030531C-003125 (20030531C-003125) 20030531C-003125
(2717 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,244 sequences; 10,046,356 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|6274552|ref|NP_009330.1| (NM_007315) signal transducer and a... 1402 0.0
Alignment gi|21536301|ref|NP_644671.1| (NM_139266) signal transducer and ... 1339 0.0
Alignment gi|21618340|ref|NP_644805.1| (NM_139276) signal transducer and ... 742 0.0
Alignment gi|21618338|ref|NP_003141.2| (NM_003150) signal transducer and ... 741 0.0
Alignment gi|4507255|ref|NP_003142.1| (NM_003151) signal transducer and a... 730 0.0
Alignment gi|4885615|ref|NP_005410.1| (NM_005419) signal transducer and a... 520 e-147
Alignment gi|21618344|ref|NP_036580.2| (NM_012448) signal transducer and ... 272 7e-73
Alignment gi|21618342|ref|NP_003143.2| (NM_003152) signal transducer and ... 258 1e-68
Alignment gi|23397678|ref|NP_003144.3| (NM_003153) signal transducer and ... 181 3e-45
Alignment gi|14249254|ref|NP_116069.1| (NM_032680) hypothetical protein M... 36 0.11
>gi|6274552|ref|NP_009330.1| (NM_007315) signal transducer and
activator of transcription 1 isoform alpha; signal
transducer and activator of transcription-1; signal
transducer and activator of transcription 1, 91kD;
transcription factor ISGF-3; transcription factor ISGF-3
components p91/p84 [Homo sapiens]
Length = 750
Score = 1402 bits (3630), Expect = 0.0
Identities = 698/750 (93%), Positives = 709/750 (94%), Gaps = 15/750 (2%)
Frame = +1
Query: 295 MSQWYELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLENQDWEHAANDVSFATIRFHDL 474
MSQWYELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLE QDWEHAANDVSFATIRFHDL
Sbjct: 1 MSQWYELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLEKQDWEHAANDVSFATIRFHDL 60
Query: 475 LSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIICNCLKEERKILENAQ 654
LSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMII +CLKEERKILENAQ
Sbjct: 61 LSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIIYSCLKEERKILENAQ 120
Query: 655 RFNQTQSGNIQSTVMLDK--------------VMCIEHEIKTLEDLQDEYDFKCKTLQNR 792
RFNQ QSGNIQSTVMLDK VMCIEHEIK+LEDLQDEYDFKCKTLQNR
Sbjct: 121 RFNQAQSGNIQSTVMLDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNR 180
Query: 793 EHDTNGVAKNDQKQEQMLLQKMYLMLDNKRKEVVNKIIELLNVTELTQKALINDELVEWK 972
EH+TNGVAK+DQKQEQ+LL+KMYLMLDNKRKEVV+KIIELLNVTELTQ ALINDELVEWK
Sbjct: 181 EHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWK 240
Query: 973 RRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRXXXXXXXXXXXXYTYEHDPITKNKQA 1152
RRQQSACIGGPPNACLDQLQNWFTIVAESLQQVR YTYEHDPITKNKQ
Sbjct: 241 RRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQV 300
Query: 1153 LWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYNLKV 1332
LWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYNLKV
Sbjct: 301 LWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYNLKV 360
Query: 1333 KVLFDKDVSERNTVKGFRKFNILGTHTKVMNMEESTNGSLAAEFRHLQLKEQKNAGARTN 1512
KVLFDKDV+ERNTVKGFRKFNILGTHTKVMNMEESTNGSLAAEFRHLQLKEQKNAG RTN
Sbjct: 361 KVLFDKDVNERNTVKGFRKFNILGTHTKVMNMEESTNGSLAAEFRHLQLKEQKNAGTRTN 420
Query: 1513 EGPLIVTEELHSLSFETQLCQPGLVIDLETTSLPVVVISNVSQLPSGWASILWYNMLVAE 1692
EGPLIVTEELHSLSFETQLCQPGLVIDLETTSLPVVVISNVSQLPSGWASILWYNMLVAE
Sbjct: 421 EGPLIVTEELHSLSFETQLCQPGLVIDLETTSLPVVVISNVSQLPSGWASILWYNMLVAE 480
Query: 1693 PRNLSFFLNPPCARWSQLSEVLSWQFSSVTKRGLNVDQLNMLGEKLLGPTAGPDGLIPWT 1872
PRNLSFFL PPCARW+QLSEVLSWQFSSVTKRGLNVDQLNMLGEKLLGP A PDGLIPWT
Sbjct: 481 PRNLSFFLTPPCARWAQLSEVLSWQFSSVTKRGLNVDQLNMLGEKLLGPNASPDGLIPWT 540
Query: 1873 RFCKENINDKNFPFWLWIESILELIKKHLLSLWNDGCIVGFISKERERALLKDQQPGTFL 2052
RFCKENINDKNFPFWLWIESILELIKKHLL LWNDGCI+GFISKERERALLKDQQPGTFL
Sbjct: 541 RFCKENINDKNFPFWLWIESILELIKKHLLPLWNDGCIMGFISKERERALLKDQQPGTFL 600
Query: 2053 LRFSESCREGAITFTWVERSQNGGEPYFHAVEPYTKKELSAVTFPDIIRNYKVMAAENIP 2232
LRFSES REGAITFTWVERSQNGGEP FHAVEPYTKKELSAVTFPDIIRNYKVMAAENIP
Sbjct: 601 LRFSESSREGAITFTWVERSQNGGEPDFHAVEPYTKKELSAVTFPDIIRNYKVMAAENIP 660
Query: 2233 ENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELDGPKGTGYIKTELISVSEVHPSRLQTT 2412
ENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELDGPKGTGYIKTELISVSEVHPSRLQTT
Sbjct: 661 ENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELDGPKGTGYIKTELISVSEVHPSRLQTT 720
Query: 2413 DNLLPMSPEEFDEVSRMVGPVEFD-MMNAV 2499
DNLLPMSPEEFDEVSR+VG VEFD MMN V
Sbjct: 721 DNLLPMSPEEFDEVSRIVGSVEFDSMMNTV 750
>gi|21536301|ref|NP_644671.1| (NM_139266) signal transducer and
activator of transcription 1 isoform beta; signal
transducer and activator of transcription-1; signal
transducer and activator of transcription 1, 91kD;
transcription factor ISGF-3; transcription factor ISGF-3
components p91/p84 [Homo sapiens]
Length = 712
Score = 1339 bits (3465), Expect = 0.0
Identities = 664/712 (93%), Positives = 674/712 (94%), Gaps = 14/712 (1%)
Frame = +1
Query: 295 MSQWYELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLENQDWEHAANDVSFATIRFHDL 474
MSQWYELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLE QDWEHAANDVSFATIRFHDL
Sbjct: 1 MSQWYELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLEKQDWEHAANDVSFATIRFHDL 60
Query: 475 LSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIICNCLKEERKILENAQ 654
LSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMII +CLKEERKILENAQ
Sbjct: 61 LSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIIYSCLKEERKILENAQ 120
Query: 655 RFNQTQSGNIQSTVMLDK--------------VMCIEHEIKTLEDLQDEYDFKCKTLQNR 792
RFNQ QSGNIQSTVMLDK VMCIEHEIK+LEDLQDEYDFKCKTLQNR
Sbjct: 121 RFNQAQSGNIQSTVMLDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNR 180
Query: 793 EHDTNGVAKNDQKQEQMLLQKMYLMLDNKRKEVVNKIIELLNVTELTQKALINDELVEWK 972
EH+TNGVAK+DQKQEQ+LL+KMYLMLDNKRKEVV+KIIELLNVTELTQ ALINDELVEWK
Sbjct: 181 EHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWK 240
Query: 973 RRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRXXXXXXXXXXXXYTYEHDPITKNKQA 1152
RRQQSACIGGPPNACLDQLQNWFTIVAESLQQVR YTYEHDPITKNKQ
Sbjct: 241 RRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQV 300
Query: 1153 LWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYNLKV 1332
LWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYNLKV
Sbjct: 301 LWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYNLKV 360
Query: 1333 KVLFDKDVSERNTVKGFRKFNILGTHTKVMNMEESTNGSLAAEFRHLQLKEQKNAGARTN 1512
KVLFDKDV+ERNTVKGFRKFNILGTHTKVMNMEESTNGSLAAEFRHLQLKEQKNAG RTN
Sbjct: 361 KVLFDKDVNERNTVKGFRKFNILGTHTKVMNMEESTNGSLAAEFRHLQLKEQKNAGTRTN 420
Query: 1513 EGPLIVTEELHSLSFETQLCQPGLVIDLETTSLPVVVISNVSQLPSGWASILWYNMLVAE 1692
EGPLIVTEELHSLSFETQLCQPGLVIDLETTSLPVVVISNVSQLPSGWASILWYNMLVAE
Sbjct: 421 EGPLIVTEELHSLSFETQLCQPGLVIDLETTSLPVVVISNVSQLPSGWASILWYNMLVAE 480
Query: 1693 PRNLSFFLNPPCARWSQLSEVLSWQFSSVTKRGLNVDQLNMLGEKLLGPTAGPDGLIPWT 1872
PRNLSFFL PPCARW+QLSEVLSWQFSSVTKRGLNVDQLNMLGEKLLGP A PDGLIPWT
Sbjct: 481 PRNLSFFLTPPCARWAQLSEVLSWQFSSVTKRGLNVDQLNMLGEKLLGPNASPDGLIPWT 540
Query: 1873 RFCKENINDKNFPFWLWIESILELIKKHLLSLWNDGCIVGFISKERERALLKDQQPGTFL 2052
RFCKENINDKNFPFWLWIESILELIKKHLL LWNDGCI+GFISKERERALLKDQQPGTFL
Sbjct: 541 RFCKENINDKNFPFWLWIESILELIKKHLLPLWNDGCIMGFISKERERALLKDQQPGTFL 600
Query: 2053 LRFSESCREGAITFTWVERSQNGGEPYFHAVEPYTKKELSAVTFPDIIRNYKVMAAENIP 2232
LRFSES REGAITFTWVERSQNGGEP FHAVEPYTKKELSAVTFPDIIRNYKVMAAENIP
Sbjct: 601 LRFSESSREGAITFTWVERSQNGGEPDFHAVEPYTKKELSAVTFPDIIRNYKVMAAENIP 660
Query: 2233 ENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELDGPKGTGYIKTELISVSEV 2388
ENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELDGPKGTGYIKTELISVSEV
Sbjct: 661 ENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELDGPKGTGYIKTELISVSEV 712
>gi|21618340|ref|NP_644805.1| (NM_139276) signal transducer and
activator of transcription 3 isoform 1; acute-phase
response factor; DNA-binding protein APRF [Homo sapiens]
Length = 770
Score = 742 bits (1915), Expect = 0.0
Identities = 378/741 (51%), Positives = 516/741 (69%), Gaps = 21/741 (2%)
Frame = +1
Query: 295 MSQWYELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLENQDWEHAANDVSFATIRFHDL 474
M+QW +LQQLD+++LEQ+HQLY DSFPME+RQ+LA W+E+QDW +AA+ S AT+ FH+L
Sbjct: 1 MAQWNQLQQLDTRYLEQLHQLYSDSFPMELRQFLAPWIESQDWAYAASKESHATLVFHNL 60
Query: 475 LSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIICNCLKEERKILENAQ 654
L ++D QYSRF E+N L QHN+R+ K+ LQ + E P++++ I+ CL EE ++L+ A
Sbjct: 61 LGEIDQQYSRFLQESNVLYQHNLRRIKQFLQSRYLEKPMEIARIVARCLWEESRLLQTAA 120
Query: 655 RFNQT--QSGNIQSTVMLDK--------------VMCIEHEIKTLEDLQDEYDFKCKTLQ 786
Q Q+ + + V+ +K V +E ++K +E+LQD++DF KTL+
Sbjct: 121 TAAQQGGQANHPTAAVVTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLK 180
Query: 787 NRE--HDTNGVAKNDQKQEQMLLQKMYLMLDNKRKEVVNKIIELLNVTELTQKALINDEL 960
++ D NG ++ +Q+ L++M LD R+ +V+++ LL+ E QK L ++EL
Sbjct: 181 SQGDMQDLNGNNQSVTRQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEEL 240
Query: 961 VEWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRXXXXXXXXXXXXYTYEHDPITK 1140
+WKRRQQ ACIGGPPN CLD+L+NW T +AES Q R +Y+ DPI +
Sbjct: 241 ADWKRRQQIACIGGPPNICLDRLENWITSLAESQLQTRQQIKKLEELQQKVSYKGDPIVQ 300
Query: 1141 NKQALWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNY 1320
++ L +R LF+ L++S+FVVERQPCMP HP RPLV+KTGVQFT K+RLLVK ELNY
Sbjct: 301 HRPMLEERIVELFRNLMKSAFVVERQPCMPMHPDRPLVIKTGVQFTTKVRLLVKFPELNY 360
Query: 1321 NLKVKVLFDKDVSERNTVKGFRKFNILGTHTKVMNMEESTNGSLAAEFRHLQLKEQK--N 1494
LK+KV DKD + ++G RKFNILGT+TKVMNMEES NGSL+AEF+HL L+EQ+ N
Sbjct: 361 QLKIKVCIDKDSGDVAALRGSRKFNILGTNTKVMNMEESNNGSLSAEFKHLTLREQRCGN 420
Query: 1495 AGARTNEGPLIVTEELHSLSFETQLCQPGLVIDLETTSLPVVVISNVSQLPSGWASILWY 1674
G + LIVTEELH ++FET++ GL IDLET SLPVVVISN+ Q+P+ WASILWY
Sbjct: 421 GGRANCDASLIVTEELHLITFETEVYHQGLKIDLETHSLPVVVISNICQMPNAWASILWY 480
Query: 1675 NMLVAEPRNLSFFLNPPCARWSQLSEVLSWQFSSVTKRGLNVDQLNMLGEKLLGPTAGPD 1854
NML P+N++FF PP W Q++EVLSWQFSS TKRGL+++QL L EKLLGP
Sbjct: 481 NMLTNNPKNVNFFTKPPIGTWDQVAEVLSWQFSSTTKRGLSIEQLTTLAEKLLGPGVNYS 540
Query: 1855 GL-IPWTRFCKENINDKNFPFWLWIESILELIKKHLLSLWNDGCIVGFISKERERALLKD 2031
G I W +FCKEN+ K F FW+W+++I++L+KK++L+LWN+G I+GFISKERERA+L
Sbjct: 541 GCQITWAKFCKENMAGKGFSFWVWLDNIIDLVKKYILALWNEGYIMGFISKERERAILST 600
Query: 2032 QQPGTFLLRFSESCREGAITFTWVERSQNGGEPYFHAVEPYTKKELSAVTFPDIIRNYKV 2211
+ PGTFLLRFSES +EG +TFTWVE+ + G+ +VEPYTK++L+ ++F +II YK+
Sbjct: 601 KPPGTFLLRFSESSKEGGVTFTWVEKDIS-GKTQIQSVEPYTKQQLNNMSFAEIIMGYKI 659
Query: 2212 MAAENIPENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELDGPKGTGYIKTELISVSEVH 2391
M A NI +PL YLYP+I K+ AFGK Y RP E+ E E D Y+KT+ I V+
Sbjct: 660 MDATNILVSPLVYLYPDIPKEEAFGK-YCRP-ESQEHPEADPGSAAPYLKTKFICVT--- 714
Query: 2392 PSRLQTTDNLLPMSPEEFDEV 2454
P+ T + LPMSP D +
Sbjct: 715 PTTCSNTID-LPMSPRTLDSL 734
>gi|21618338|ref|NP_003141.2| (NM_003150) signal transducer and
activator of transcription 3 isoform 2; acute-phase
response factor; DNA-binding protein APRF [Homo sapiens]
Length = 769
Score = 741 bits (1912), Expect = 0.0
Identities = 379/741 (51%), Positives = 517/741 (69%), Gaps = 21/741 (2%)
Frame = +1
Query: 295 MSQWYELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLENQDWEHAANDVSFATIRFHDL 474
M+QW +LQQLD+++LEQ+HQLY DSFPME+RQ+LA W+E+QDW +AA+ S AT+ FH+L
Sbjct: 1 MAQWNQLQQLDTRYLEQLHQLYSDSFPMELRQFLAPWIESQDWAYAASKESHATLVFHNL 60
Query: 475 LSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIICNCLKEERKILENAQ 654
L ++D QYSRF E+N L QHN+R+ K+ LQ + E P++++ I+ CL EE ++L+ A
Sbjct: 61 LGEIDQQYSRFLQESNVLYQHNLRRIKQFLQSRYLEKPMEIARIVARCLWEESRLLQTAA 120
Query: 655 RFNQT--QSGNIQSTVMLDK--------------VMCIEHEIKTLEDLQDEYDFKCKTLQ 786
Q Q+ + + V+ +K V +E ++K +E+LQD++DF KTL+
Sbjct: 121 TAAQQGGQANHPTAAVVTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLK 180
Query: 787 NRE--HDTNGVAKNDQKQEQMLLQKMYLMLDNKRKEVVNKIIELLNVTELTQKALINDEL 960
++ D NG ++ +Q+ L++M LD R+ +V+++ LL+ E QK L ++EL
Sbjct: 181 SQGDMQDLNGNNQSVTRQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEEL 240
Query: 961 VEWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRXXXXXXXXXXXXYTYEHDPITK 1140
+WKRRQQ ACIGGPPN CLD+L+NW T +AES Q R +Y+ DPI +
Sbjct: 241 ADWKRRQQIACIGGPPNICLDRLENWITSLAESQLQTRQQIKKLEELQQKVSYKGDPIVQ 300
Query: 1141 NKQALWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNY 1320
++ L +R LF+ L++S+FVVERQPCMP HP RPLV+KTGVQFT K+RLLVK ELNY
Sbjct: 301 HRPMLEERIVELFRNLMKSAFVVERQPCMPMHPDRPLVIKTGVQFTTKVRLLVKFPELNY 360
Query: 1321 NLKVKVLFDKDVSERNTVKGFRKFNILGTHTKVMNMEESTNGSLAAEFRHLQLKEQK--N 1494
LK+KV DKD + ++G RKFNILGT+TKVMNMEES NGSL+AEF+HL L+EQ+ N
Sbjct: 361 QLKIKVCIDKDSGDVAALRGSRKFNILGTNTKVMNMEESNNGSLSAEFKHLTLREQRCGN 420
Query: 1495 AGARTNEGPLIVTEELHSLSFETQLCQPGLVIDLETTSLPVVVISNVSQLPSGWASILWY 1674
G + LIVTEELH ++FET++ GL IDLET SLPVVVISN+ Q+P+ WASILWY
Sbjct: 421 GGRANCDASLIVTEELHLITFETEVYHQGLKIDLETHSLPVVVISNICQMPNAWASILWY 480
Query: 1675 NMLVAEPRNLSFFLNPPCARWSQLSEVLSWQFSSVTKRGLNVDQLNMLGEKLLGPTAGPD 1854
NML P+N++FF PP W Q++EVLSWQFSS TKRGL+++QL L EKLLGP
Sbjct: 481 NMLTNNPKNVNFFTKPPIGTWDQVAEVLSWQFSSTTKRGLSIEQLTTLAEKLLGPGVNYS 540
Query: 1855 GL-IPWTRFCKENINDKNFPFWLWIESILELIKKHLLSLWNDGCIVGFISKERERALLKD 2031
G I W +FCKEN+ K F FW+W+++I++L+KK++L+LWN+G I+GFISKERERA+L
Sbjct: 541 GCQITWAKFCKENMAGKGFSFWVWLDNIIDLVKKYILALWNEGYIMGFISKERERAILST 600
Query: 2032 QQPGTFLLRFSESCREGAITFTWVERSQNGGEPYFHAVEPYTKKELSAVTFPDIIRNYKV 2211
+ PGTFLLRFSES +EG +TFTWVE+ + G+ +VEPYTK++L+ ++F +II YK+
Sbjct: 601 KPPGTFLLRFSESSKEGGVTFTWVEKDIS-GKTQIQSVEPYTKQQLNNMSFAEIIMGYKI 659
Query: 2212 MAAENIPENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELDGPKGTGYIKTELISVSEVH 2391
M A NI +PL YLYP+I K+ AFGK Y RP E+ E E D P Y+KT+ I V+
Sbjct: 660 MDATNILVSPLVYLYPDIPKEEAFGK-YCRP-ESQEHPEAD-PGAAPYLKTKFICVT--- 713
Query: 2392 PSRLQTTDNLLPMSPEEFDEV 2454
P+ T + LPMSP D +
Sbjct: 714 PTTCSNTID-LPMSPRTLDSL 733
>gi|4507255|ref|NP_003142.1| (NM_003151) signal transducer and
activator of transcription 4 [Homo sapiens]
Length = 748
Score = 730 bits (1884), Expect = 0.0
Identities = 392/750 (52%), Positives = 517/750 (68%), Gaps = 20/750 (2%)
Frame = +1
Query: 295 MSQWYELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLENQDWEHAANDVSFATIRFHDL 474
MSQW ++QQL+ KFLEQV Q YDD+FPMEIR LAQW+ENQDWE A+N+ + ATI +L
Sbjct: 1 MSQWNQVQQLEIKFLEQVDQFYDDNFPMEIRHLLAQWIENQDWEAASNNETMATILLQNL 60
Query: 475 LSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIICNCLKEERKILENAQ 654
L QLD+Q R S E N LL HN+++ ++ LQ F +P+ ++++I NCL+EER+IL A
Sbjct: 61 LIQLDEQLGRVSKEKNLLLIHNLKRIRKVLQGKFHGNPMHVAVVISNCLREERRILAAAN 120
Query: 655 RFNQTQ-SGNIQSTVMLDKVMCIEHEI--------------KTLEDLQDEYDFKCKTLQN 789
Q ++QS+ + ++ +EH++ K LEDLQDE+D++ KT+Q
Sbjct: 121 MPVQGPLEKSLQSSSVSERQRNVEHKVAAIKNSVQMTEQDTKYLEDLQDEFDYRYKTIQT 180
Query: 790 REH-DTNGVAKNDQKQEQMLLQKMYLMLDNKRKEVVNKIIELLNVTELTQKALINDELVE 966
+ D N N QE + LQ+M LD KRKE ++K+ ++++ T+L ++ +EL +
Sbjct: 181 MDQSDKNSAMVN---QEVLTLQEMLNSLDFKRKEALSKMTQIIHETDLLMNTMLIEELQD 237
Query: 967 WKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRXXXXXXXXXXXXYTYEHDPITKNK 1146
WKRRQQ ACIGGP + LDQLQN FT++AESL Q+R TYE DPI +
Sbjct: 238 WKRRQQIACIGGPLHNGLDQLQNCFTLLAESLFQLRRQLEKLEEQSTKMTYEGDPIPMQR 297
Query: 1147 QALWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYNL 1326
+ +R L L ++SFVVERQPCMPTHPQRPLVLKT +QFTVKLRLL+KL ELNY +
Sbjct: 298 THMLERVTFLIYNLFKNSFVVERQPCMPTHPQRPLVLKTLIQFTVKLRLLIKLPELNYQV 357
Query: 1327 KVKVLFDKDVSERNTVKGFRKFNILGTHTKVMNMEESTNGSLAAEFRHLQLKEQKN-AGA 1503
KVK DK+VS + R+F + GT+ K M++EES+NGSL+ EFRHLQ KE K+ AG
Sbjct: 358 KVKASIDKNVSTLSN----RRFVLCGTNVKAMSIEESSNGSLSVEFRHLQPKEMKSSAGG 413
Query: 1504 RTNEGPLIVTEELHSLSFETQLCQPGLVIDLETTSLPVVVISNVSQLPSGWASILWYNML 1683
+ NEG +VTEELHS++FETQ+C GL IDLET+SLPVV+ISNVSQLP+ WASI+WYN+
Sbjct: 414 KGNEGCHMVTEELHSITFETQICLYGLTIDLETSSLPVVMISNVSQLPNAWASIIWYNVS 473
Query: 1684 VAEPRNLSFFLNPPCARWSQLSEVLSWQFSSVTKRGLNVDQLNMLGEKLLGPTAGPDGLI 1863
+ +NL FF NPP A SQL EV+SWQFSS RGLN DQL+ML EKL ++ DG +
Sbjct: 474 TNDSQNLVFFNNPPPATLSQLLEVMSWQFSSYVGRGLNSDQLHMLAEKLTVQSSYSDGHL 533
Query: 1864 PWTRFCKENINDKNFPFWLWIESILELIKKHLLSLWNDGCIVGFISKERERALLKDQQPG 2043
W +FCKE++ K+F FW W+E+IL+LIKKH+L LW DG ++GF+SKE+ER LLKD+ PG
Sbjct: 534 TWAKFCKEHLPGKSFTFWTWLEAILDLIKKHILPLWIDGYVMGFVSKEKERLLLKDKMPG 593
Query: 2044 TFLLRFSESCREGAITFTWVERSQNGGEPYFHAVEPYTKKELSAVTFPDIIRNYKVMAAE 2223
TFLLRFSES G ITFTWV+ S++ GE FH+VEPY K LSA+ F DI+R+YKV+ AE
Sbjct: 594 TFLLRFSES-HLGGITFTWVDHSES-GEVRFHSVEPYNKGRLSALPFADILRDYKVIMAE 651
Query: 2224 NIPENPLKYLYPNIDKDHAFGKYY-SRPKEAPEPMELDGPKGTGYIKTELISVSEVHPSR 2400
NIPENPLKYLYP+I KD AFGK+Y S+P E P E G K GY+ + I +S +
Sbjct: 652 NIPENPLKYLYPDIPKDKAFGKHYSSQPCEVSRPTE-RGDK--GYVPSVFIPISTIRSDS 708
Query: 2401 LQ--TTDNLLPMSPEEFDEVSRMVGPVEFD 2484
+ + +LLPMSP + + + P +
Sbjct: 709 TEPHSPSDLLPMSPSVYAVLRENLSPTTIE 738
>gi|4885615|ref|NP_005410.1| (NM_005419) signal transducer and
activator of transcription 2; signal transducer and
activator of transcription 2, 113kD; interferon alpha
induced transcriptional activator [Homo sapiens]
Length = 851
Score = 520 bits (1339), Expect = e-147
Identities = 311/731 (42%), Positives = 433/731 (58%), Gaps = 20/731 (2%)
Frame = +1
Query: 295 MSQWYELQQLDSKFLEQVHQLYDDSF-PMEIRQYLAQWLENQDWEHAA--NDVSFATIRF 465
M+QW LQ LDS F +Q+HQLY S P++IRQYLA W+E+Q+W+ AA +D S AT+ F
Sbjct: 1 MAQWEMLQNLDSPFQDQLHQLYSHSLLPVDIRQYLAVWIEDQNWQEAALGSDDSKATMLF 60
Query: 466 HDLLSQLDDQYSRFSLE-NNFLLQHNIRKSKRNLQDNFQEDPIQMSMIICNCLKEERKIL 642
L QL+ + R S + + LLQHN+RK R++Q F +DP Q++ +I N L EE++IL
Sbjct: 61 FHFLDQLNYECGRCSQDPESLLLQHNLRKFCRDIQP-FSQDPTQLAEMIFNLLLEEKRIL 119
Query: 643 ENAQRFN------------QTQSGNIQSTVMLDKVMCIEHEIKTLEDLQDEYDFKCKTLQ 786
AQR ++Q I+S + LD +E +K++ L+D+ D C +
Sbjct: 120 IQAQRAQLEQGEPVLETPVESQQHEIESRI-LDLRAMMEKLVKSISQLKDQQDVFCFRYK 178
Query: 787 NREHDTNGVAKNDQKQEQMLLQKMYLMLDNKRKEVVNKIIELLN-VTELTQKALINDELV 963
+ Q +EQ +LQ+ LD +RKEV++ LL +T L + L+ +L
Sbjct: 179 IQAKGKTPSLDPHQTKEQKILQETLNELDKRRKEVLDASKALLGRLTTLIE--LLLPKLE 236
Query: 964 EWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRXXXXXXXXXXXXYTYEHDPITKN 1143
EWK +QQ ACI P + L+QL+ WFT A+ L +R +Y+ DP+TK
Sbjct: 237 EWKAQQQKACIRAPIDHGLEQLETWFTAGAKLLFHLRQLLKELKGLSCLVSYQDDPLTKG 296
Query: 1144 KQALWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYN 1323
+ L Q+L+ +FVVE QPCMP P RPL+LKTG +FTV+ RLLV+LQE N +
Sbjct: 297 VDLRNAQVTELLQRLLHRAFVVETQPCMPQTPHRPLILKTGSKFTVRTRLLVRLQEGNES 356
Query: 1324 LKVKVLFDKDVSERNTVKGFRKFNILGTHTKVMNMEESTNGSLAAEFRHLQLKEQKNAGA 1503
L V+V D++ + ++GFRKFNIL ++ K + E+ + L +F +L L EQ++ G+
Sbjct: 357 LTVEVSIDRNPPQ---LQGFRKFNILTSNQKTLTPEKGQSQGLIWDFGYLTLVEQRSGGS 413
Query: 1504 R--TNEGPLIVTEELHSLSFETQLCQPGLVIDLETTSLPVVVISNVSQLPSGWASILWYN 1677
+N+GPL VTEELH +SF + GL +L+T +LPVV+ISN++QL WAS+LW+N
Sbjct: 414 GKGSNKGPLGVTEELHIISFTVKYTYQGLKQELKTDTLPVVIISNMNQLSIAWASVLWFN 473
Query: 1678 MLVAEPRNLSFFLNPPCARWSQLSEVLSWQFSSVTKRGLNVDQLNMLGEKLLGPTA-GPD 1854
+L +N FF NPP A WS L LSWQFSS RGLN DQL+ML KL G D
Sbjct: 474 LLSPNLQNQQFFSNPPKAPWSLLGPALSWQFSSYVGRGLNSDQLSMLRNKLFGQNCRTED 533
Query: 1855 GLIPWTRFCKENINDKNFPFWLWIESILELIKKHLLSLWNDGCIVGFISKERERALLKDQ 2034
L+ W F K PFW W++ ILEL+ HL LWNDG I+GF+S+ +ER LLK
Sbjct: 534 PLLSWADFTKRESPPGKLPFWTWLDKILELVHDHLKDLWNDGRIMGFVSRSQERRLLKKT 593
Query: 2035 QPGTFLLRFSESCREGAITFTWVERSQNGGEPYFHAVEPYTKKELSAVTFPDIIRNYKVM 2214
GTFLLRFSES EG IT +WVE Q+ + ++V+PYTK+ L ++ +IIR+Y+++
Sbjct: 594 MSGTFLLRFSES-SEGGITCSWVEH-QDDDKVLIYSVQPYTKEVLQSLPLTEIIRHYQLL 651
Query: 2215 AAENIPENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELDGPKGTGYIKTELISVSEVHP 2394
ENIPENPL++LYP I +D AFG YY E + Y+K LI VS
Sbjct: 652 TEENIPENPLRFLYPRIPRDEAFGCYYQEKVNLQERRK--------YLKHRLIVVSNRQV 703
Query: 2395 SRLQTTDNLLP 2427
LQ L P
Sbjct: 704 DELQQPLELKP 714
>gi|21618344|ref|NP_036580.2| (NM_012448) signal transducer and
activator of transcription 5B; signal transducer and
activator of transcription 5; transcription factor STAT5B
[Homo sapiens]
Length = 787
Score = 272 bits (696), Expect = 7e-73
Identities = 217/742 (29%), Positives = 355/742 (47%), Gaps = 47/742 (6%)
Frame = +1
Query: 295 MSQWYELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLENQDWEHAANDVSFATIRFHDL 474
M+ W + QQL + L Q+ LY FP+E+R YL+QW+E+Q W+ D I+ L
Sbjct: 1 MAVWIQAQQLQGEALHQMQALYGQHFPIEVRHYLSQWIESQAWDSVDLDNPQENIKATQL 60
Query: 475 LSQLDDQYSRFSL----ENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIICNCLKEERKIL 642
L L + + + E+ FLL+ + LQ+ + P+++ I + L E++++
Sbjct: 61 LEGLVQELQKKAEHQVGEDGFLLKIKLGHYATQLQNTYDRCPMELVRCIRHILYNEQRLV 120
Query: 643 ENAQRFNQTQSG--------NIQSTVMLDKVMCI----EHEIKTLEDLQDEYDFKCKT-- 780
A + ++Q +++ + E+E+K L+ Q+ + + +
Sbjct: 121 REANNGSSPAGSLADAMSQKHLQINQTFEELRLVTQDTENELKKLQQTQEYFIIQYQESL 180
Query: 781 -----------LQNREHDTNGVA-KNDQKQEQMLLQKMYLMLDNKRKEVVNKIIELLNVT 924
L +E + A + Q + LQ+ L R E+ K + L +
Sbjct: 181 RIQAQFGPLAQLSPQERLSRETALQQKQVSLEAWLQREAQTLQQYRVELAEKHQKTLQLL 240
Query: 925 ELTQKALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRXXXXXXXXXX 1104
Q +++DEL++WKRRQQ A GGPP LD LQ+W +AE + Q R
Sbjct: 241 RKQQTIILDDELIQWKRRQQLAGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAEHLC 300
Query: 1105 XXYTYEHDPITKNKQALWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVK 1284
P+ + + + L+ S+F++E+QP P VLKT +F
Sbjct: 301 QQLPIP-GPVEEMLAEVNATITDIISALVTSTFIIEKQP--------PQVLKTQTKFAAT 351
Query: 1285 LRLLVKLQELNYNLKVKVLFDKDVSERNTVKGFRKFNILGTHTK-------VMNMEESTN 1443
+RLLV +LN ++ + +SE+ + N ++ VM ++T
Sbjct: 352 VRLLVG-GKLNVHMNPPQVKATIISEQQAKSLLKNENTRNDYSGEILNNCCVMEYHQAT- 409
Query: 1444 GSLAAEFRHLQLKEQKNAGARTNEGPLIVTEELHSLSFETQLCQPG--LVIDLETTSLPV 1617
G+L+A FR++ LK K + R E VTEE ++ FE+Q G LV ++T SLPV
Sbjct: 410 GTLSAHFRNMSLKRIKRSDRRGAES---VTEEKFTILFESQFSVGGNELVFQVKTLSLPV 466
Query: 1618 VVISNVSQLPSGWASILWYNMLVAEPRNLSFFLNPPCARWSQLSEVLSWQFSSVTK--RG 1791
VVI + SQ + A++LW N AEP + F + P W QL E L+ +F + + RG
Sbjct: 467 VVIVHGSQDNNATATVLWDNAF-AEPGRVPFAV-PDKVLWPQLCEALNMKFKAEVQSNRG 524
Query: 1792 LNVDQLNMLGEKLLGPTAGP----DGL-IPWTRFCKENINDKNFPFWLWIESILELIKKH 1956
L + L L +KL ++ GL + W++F +EN+ +N+ FW W + ++E++KKH
Sbjct: 525 LTKENLVFLAQKLFNNSSSHLEDYSGLSVSWSQFNRENLPGRNYTFWQWFDGVMEVLKKH 584
Query: 1957 LLSLWNDGCIVGFISKERERALLKDQQPGTFLLRFSESCREGAITFTWVERSQNGGEPYF 2136
L WNDG I+GF++K++ LL ++ GTFLLRFS+S G IT W SQ E F
Sbjct: 585 LKPHWNDGAILGFVNKQQAHDLLINKPDGTFLLRFSDS-EIGGITIAWKFDSQ---ERMF 640
Query: 2137 HAVEPYTKKELSAVTFPDIIRNYKVMAAENIPENPLKYLYPNIDKDHAFGKYYSRPKEAP 2316
+ P+T ++ S + D + + N L Y++P+ KD + KYY+ P
Sbjct: 641 WNLMPFTTRDFSIRSLADRLGDL----------NYLIYVFPDRPKDEVYSKYYT-----P 685
Query: 2317 EPMELDGPKGT-GYIKTELISV 2379
P E K GY+K ++ V
Sbjct: 686 VPCESATAKAVDGYVKPQIKQV 707
>gi|21618342|ref|NP_003143.2| (NM_003152) signal transducer and
activator of transcription 5A; signal transducer and
activator of transcription 5 [Homo sapiens]
Length = 794
Score = 258 bits (659), Expect = 1e-68
Identities = 211/716 (29%), Positives = 337/716 (46%), Gaps = 48/716 (6%)
Frame = +1
Query: 295 MSQWYELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLENQDWEHA----ANDVSFATIR 462
M+ W + QQL L Q+ LY FP+E+R YLAQW+E+Q W+ D + AT
Sbjct: 1 MAGWIQAQQLQGDALRQMQVLYGQHFPIEVRHYLAQWIESQPWDAIDLDNPQDRAQATQL 60
Query: 463 FHDLLSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIICNCLKEERKIL 642
L+ +L + E+ FLL+ + LQ + P+++ I + L E++++
Sbjct: 61 LEGLVQELQKKAEHQVGEDGFLLKIKLGHYATQLQKTYDRCPLELVRCIRHILYNEQRLV 120
Query: 643 ENAQRFNQTQSGNIQSTVMLDKVMCI--------------EHEIKTLEDLQDEYDFKCKT 780
A N + I M K + I E+E+K L+ Q+ + + +
Sbjct: 121 REAN--NCSSPAGILVDAMSQKHLQINQTFEELRLVTQDTENELKKLQQTQEYFIIQYQE 178
Query: 781 -------------LQNREHDTNGVA-KNDQKQEQMLLQKMYLMLDNKRKEVVNKIIELLN 918
L +E + A + Q + LQ+ L R E+ K + L
Sbjct: 179 SLRIQAQFAQLAQLSPQERLSRETALQQKQVSLEAWLQREAQTLQQYRVELAEKHQKTLQ 238
Query: 919 VTELTQKALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRXXXXXXXX 1098
+ Q +++DEL++WKRRQQ A GGPP LD LQ+W +AE + Q R
Sbjct: 239 LLRKQQTIILDDELIQWKRRQQLAGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAEH 298
Query: 1099 XXXXYTYEHDPITKNKQALWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFT 1278
P+ + + + L+ S+F++E+QP P VLKT +F
Sbjct: 299 LCQQLPIP-GPVEEMLAEVNATITDIISALVTSTFIIEKQP--------PQVLKTQTKFA 349
Query: 1279 VKLRLLVKLQELNYNL---KVKVLFDKDVSERNTVKGFRKFNILG----THTKVMNMEES 1437
+RLLV +LN ++ +VK + ++ +K N + VM ++
Sbjct: 350 ATVRLLVG-GKLNVHMNPPQVKATIISEQQAKSLLKNENTRNECSGEILNNCCVMEYHQA 408
Query: 1438 TNGSLAAEFRHLQLKEQKNAGARTNEGPLIVTEELHSLSFETQLCQPG--LVIDLETTSL 1611
T G+L+A FR++ LK K A R E VTEE ++ FE+Q LV ++T SL
Sbjct: 409 T-GTLSAHFRNMSLKRIKRADRRGAES---VTEEKFTVLFESQFSVGSNELVFQVKTLSL 464
Query: 1612 PVVVISNVSQLPSGWASILWYNMLVAEPRNLSFFLNPPCARWSQLSEVLSWQFSSVTK-- 1785
PVVVI + SQ + A++LW N AEP + F + P W QL E L+ +F + +
Sbjct: 465 PVVVIVHGSQDHNATATVLWDNAF-AEPGRVPFAV-PDKVLWPQLCEALNMKFKAEVQSN 522
Query: 1786 RGLNVDQLNMLGEKLLGPTAGP----DGL-IPWTRFCKENINDKNFPFWLWIESILELIK 1950
RGL + L L +KL ++ GL + W++F +EN+ N+ FW W + ++E++K
Sbjct: 523 RGLTKENLVFLAQKLFNNSSSHLEDYSGLSVSWSQFNRENLPGWNYTFWQWFDGVMEVLK 582
Query: 1951 KHLLSLWNDGCIVGFISKERERALLKDQQPGTFLLRFSESCREGAITFTWVERSQNGGEP 2130
KH WNDG I+GF++K++ LL ++ GTFLLRFS+S G IT W + E
Sbjct: 583 KHHKPHWNDGAILGFVNKQQAHDLLINKPDGTFLLRFSDS-EIGGITIAW---KFDSPER 638
Query: 2131 YFHAVEPYTKKELSAVTFPDIIRNYKVMAAENIPENPLKYLYPNIDKDHAFGKYYS 2298
++P+T ++ S + D + + L Y++P+ KD F KYY+
Sbjct: 639 NLWNLKPFTTRDFSIRSLADRLGDLSY----------LIYVFPDRPKDEVFSKYYT 684
>gi|23397678|ref|NP_003144.3| (NM_003153) signal transducer and
activator of transcription 6; STAT, interleukin4-induced;
transcription factor IL-4 STAT [Homo sapiens]
Length = 847
Score = 181 bits (458), Expect = 3e-45
Identities = 202/735 (27%), Positives = 322/735 (43%), Gaps = 32/735 (4%)
Frame = +1
Query: 340 EQVHQLYDDSFPMEIRQYLAQWLENQDWEHAANDVSFATIRFHDLLSQLDDQYSRFSL-- 513
E+V +LY D FP +R L WLE+Q WE +F LLS Q+ + S+
Sbjct: 13 EKVQRLYVD-FPQHLRHLLGDWLESQPWEFLVGSDAFCCNLASALLSD-TVQHLQASVGE 70
Query: 514 --ENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIICNCLKEERKILENAQRFNQTQSGNIQ 687
E + +LQH L+ +Q DP+++ L+ E+K + R
Sbjct: 71 QGEGSTILQH-----ISTLESIYQRDPLKLVATFRQILQGEKKAVMEQFR---------- 115
Query: 688 STVMLDKVMCIEHEIKTLEDLQDEYDFK--CKTLQNREHDTNGVAKNDQKQEQMLLQKMY 861
H Q+E FK + LQ+R + + + + QK + ++
Sbjct: 116 ------------HLPMPFHWKQEELKFKTGLRRLQHRVGEIHLLREALQKGAEAGQVSLH 163
Query: 862 LMLDNKR-----KEVVNKIIELLNVTELTQKALINDELVEWKRRQQSACIGGPPNACLDQ 1026
+++ E + +++ KAL+ + WKR+QQ A G P L
Sbjct: 164 SLIETPANGTGPSEALAMLLQETTGELEAAKALVLKRIQIWKRQQQLAGNGAPFEESLAP 223
Query: 1027 LQNWFTIVAESLQQVRXXXXXXXXXXXXYTYEHDPITKNKQALWDRTFSLFQQLIQSSFV 1206
LQ + + Q++ E +P K + +L R + + L+ S F+
Sbjct: 224 LQERCESLVDIYSQLQQEVGAAGG-------ELEP--KTRASLTGRLDEVLRTLVTSCFL 274
Query: 1207 VERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYNLKVKVLFDKDVSERNTVKGFR 1386
VE+QP P VLKT +F +R L+ L+ L K ++ V+E+ R
Sbjct: 275 VEKQP--------PQVLKTQTKFQAGVRFLLGLRFLGAPAKPPLVRADMVTEKQA----R 322
Query: 1387 KFNI-----LGTHT--KVMN----MEESTNGS-LAAEFRHLQLKEQKNAGARTNEGPLIV 1530
+ ++ G + +++N +E S G+ +A F++L LK+ K + E V
Sbjct: 323 ELSVPQGPGAGAESTGEIINNTVPLENSIPGNCCSALFKNLLLKKIKRCERKGTES---V 379
Query: 1531 TEELHSLSFETQL-CQPG-LVIDLETTSLPVVVISNVSQLPSGWASILWYNMLVAEPRNL 1704
TEE ++ F PG L I L+ SLP+VVI + +Q + A+ILW N R
Sbjct: 380 TEEKCAVLFSASFTLGPGKLPIQLQALSLPLVVIVHGNQDNNAKATILWDNAFSEMDR-- 437
Query: 1705 SFFLNPPCARWSQLSEVLSWQFSSV--TKRGLNVDQLNMLGEKL-----LGPTAGPDGLI 1863
F+ W ++ E L+ +F + T RGL + L +K+ L A +
Sbjct: 438 VPFVVAERVPWEKMCETLNLKFMAEVGTNRGLLPEHFLFLAQKIFNDNSLSMEAFQHRSV 497
Query: 1864 PWTRFCKENINDKNFPFWLWIESILELIKKHLLSLWNDGCIVGFISKERERALLKDQQPG 2043
W++F KE + + F FW W + +L+L K+ L S W+D I+GFISK+ +LL ++ G
Sbjct: 498 SWSQFNKEILLGRGFTFWQWFDGVLDLTKRCLRSYWSDRLIIGFISKQYVTSLLLNEPDG 557
Query: 2044 TFLLRFSESCREGAITFTWVERSQNGGEPYFHAVEPYTKKELSAVTFPDIIRNYKVMAAE 2223
TFLLRFS+S G IT V R Q+ G P ++P++ K+LS + D IR+
Sbjct: 558 TFLLRFSDS-EIGGITIAHVIRGQD-GSPQIENIQPFSAKDLSIRSLGDRIRDLA----- 610
Query: 2224 NIPENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELDGPKGTGYIKTELISVSEVHPSRL 2403
LK LYP KD AF +Y PE M G G GY+ I ++ L
Sbjct: 611 -----QLKNLYPKKPKDEAFRSHYK-----PEQM---GKDGRGYVPA-TIKMTVERDQPL 656
Query: 2404 QTTDNLLPMSPEEFD 2448
T + +P +D
Sbjct: 657 PTPELQMPTMVPSYD 671
>gi|14249254|ref|NP_116069.1| (NM_032680) hypothetical protein MGC4266
[Homo sapiens]
Length = 395
Score = 36.2 bits (82), Expect = 0.11
Identities = 45/213 (21%), Positives = 87/213 (40%), Gaps = 17/213 (7%)
Frame = +1
Query: 415 QDWEHAANDVSFATIRFHDLLSQLDDQYSRFSLENNFL---LQHNIRKSKRNLQDNFQED 585
Q W + F D L+++ Q E N L L+ I +Q ++E
Sbjct: 181 QLWLQLKKEEPHLLSNFEDFLTRIISQLQEAHEEKNELECALKRKIAAYDEEIQHLYEEM 240
Query: 586 PIQMSMIICNCLKEERKILENAQRFNQTQSGNIQSTVMLDKVMCIEHEIKTLEDLQDEYD 765
Q+ ++E+ +L++ +RF Q +S ++ K++C E E++ L Q +
Sbjct: 241 EQQIKS------EKEQFLLKDTERF-QARSQELEQ-----KLLCKEQELEQLTQKQKRLE 288
Query: 766 FKCKTLQNREHD----------TNGVAKNDQKQEQMLLQKMYLMLDNKRKEVV----NKI 903
+C L + +H+ TN + ++ LQ L++ ++E K
Sbjct: 289 GQCTALHHDKHETKAENTKLKLTNQELARELERTSWELQDAQQQLESLQQEACKLHQEKE 348
Query: 904 IELLNVTELTQKALINDELVEWKRRQQSACIGG 1002
+E+ VTE Q+ ++ K+ C+GG
Sbjct: 349 MEVYRVTESLQR----EKAGLLKQLDFLRCVGG 377
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 10,046,356
Number of sequences in database: 19,244
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58296259
Number of Sequences: 19244
Number of extensions: 1524108
Number of successful extensions: 5189
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 2419
Number of HSP's successfully gapped in prelim test: 286
Number of HSP's that attempted gapping in prelim test: 1755
Number of HSP's gapped (non-prelim): 3685
length of query: 905
length of database: 10,046,356
effective HSP length: 49
effective length of query: 856
effective length of database: 9,103,400
effective search space: 7792510400
effective search space used: 7792510400
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search to RefSeq (Mouse) database
Query= 20030531C-003125 (20030531C-003125) 20030531C-003125
(2717 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
15,330 sequences; 7,155,815 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|31543778|ref|NP_033309.2| (NM_009283) signal transducer and ... 1328 0.0
Alignment gi|22094115|ref|NP_035616.1| (NM_011486) signal transducer and ... 736 0.0
Alignment gi|6755670|ref|NP_035617.1| (NM_011487) signal transducer and a... 728 0.0
Alignment gi|9910572|ref|NP_064347.1| (NM_019963) signal transducer and a... 498 e-141
Alignment gi|31543780|ref|NP_035619.2| (NM_011489) signal transducer and ... 268 9e-72
Alignment gi|6755672|ref|NP_035618.1| (NM_011488) signal transducer and a... 257 2e-68
Alignment gi|6678155|ref|NP_033310.1| (NM_009284) signal transducer and a... 182 9e-46
Alignment gi|9507021|ref|NP_062273.1| (NM_019400) rabaptin 5; neurocresci... 37 0.035
Alignment gi|23510277|ref|NP_700455.1| (NM_153406) RIKEN cDNA 4932439K10;... 35 0.13
Alignment gi|13540492|ref|NP_082160.1| (NM_027884) tensin [Mus musculus] 35 0.23
>gi|31543778|ref|NP_033309.2| (NM_009283) signal transducer and
activator of transcription 1 [Mus musculus]
Length = 749
Score = 1328 bits (3437), Expect = 0.0
Identities = 661/744 (88%), Positives = 685/744 (91%), Gaps = 14/744 (1%)
Frame = +1
Query: 295 MSQWYELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLENQDWEHAANDVSFATIRFHDL 474
MSQW+ELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLE QDWEHAA DVSFATIRFHDL
Sbjct: 1 MSQWFELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLEKQDWEHAAYDVSFATIRFHDL 60
Query: 475 LSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIICNCLKEERKILENAQ 654
LSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDP+QMSMII NCLKEERKILENAQ
Sbjct: 61 LSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPVQMSMIIYNCLKEERKILENAQ 120
Query: 655 RFNQTQSGNIQSTVMLDK--------------VMCIEHEIKTLEDLQDEYDFKCKTLQNR 792
RFNQ Q GNIQ+TVMLDK VMCIE EIKTLE+LQDEYDFKCKT QNR
Sbjct: 121 RFNQAQEGNIQNTVMLDKQKELDSKVRNVKDQVMCIEQEIKTLEELQDEYDFKCKTSQNR 180
Query: 793 EHDTNGVAKNDQKQEQMLLQKMYLMLDNKRKEVVNKIIELLNVTELTQKALINDELVEWK 972
E + NGVAK+DQKQEQ+LL KM+LMLDNKRKE+++KI ELLN ELTQ LINDELVEWK
Sbjct: 181 EGEANGVAKSDQKQEQLLLHKMFLMLDNKRKEIIHKIRELLNSIELTQNTLINDELVEWK 240
Query: 973 RRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRXXXXXXXXXXXXYTYEHDPITKNKQA 1152
RRQQSACIGGPPNACLDQLQ+WFTIVAE+LQQ+R +TYE DPITKNKQ
Sbjct: 241 RRQQSACIGGPPNACLDQLQSWFTIVAETLQQIRQQLKKLEELEQKFTYEPDPITKNKQV 300
Query: 1153 LWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYNLKV 1332
L DRTF LFQQLI+SSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYNLKV
Sbjct: 301 LSDRTFLLFQQLIRSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYNLKV 360
Query: 1333 KVLFDKDVSERNTVKGFRKFNILGTHTKVMNMEESTNGSLAAEFRHLQLKEQKNAGARTN 1512
KV FDKDV+E+NTVKGFRKFNILGTHTKVMNMEESTNGSLAAEFRHLQLKEQKNAG RTN
Sbjct: 361 KVSFDKDVNEKNTVKGFRKFNILGTHTKVMNMEESTNGSLAAEFRHLQLKEQKNAGNRTN 420
Query: 1513 EGPLIVTEELHSLSFETQLCQPGLVIDLETTSLPVVVISNVSQLPSGWASILWYNMLVAE 1692
EGPLIVTEELHSLSFETQLCQPGLVIDLETTSLPVVVISNVSQLPSGWASILWYNMLV E
Sbjct: 421 EGPLIVTEELHSLSFETQLCQPGLVIDLETTSLPVVVISNVSQLPSGWASILWYNMLVTE 480
Query: 1693 PRNLSFFLNPPCARWSQLSEVLSWQFSSVTKRGLNVDQLNMLGEKLLGPTAGPDGLIPWT 1872
PRNLSFFLNPPCA WSQLSEVLSWQFSSVTKRGLN DQL+MLGEKLLGP AGPDGLIPWT
Sbjct: 481 PRNLSFFLNPPCAWWSQLSEVLSWQFSSVTKRGLNADQLSMLGEKLLGPNAGPDGLIPWT 540
Query: 1873 RFCKENINDKNFPFWLWIESILELIKKHLLSLWNDGCIVGFISKERERALLKDQQPGTFL 2052
RFCKENINDKNF FW WI++ILELIKKHLL LWNDGCI+GFISKERERALLKDQQPGTFL
Sbjct: 541 RFCKENINDKNFSFWPWIDTILELIKKHLLCLWNDGCIMGFISKERERALLKDQQPGTFL 600
Query: 2053 LRFSESCREGAITFTWVERSQNGGEPYFHAVEPYTKKELSAVTFPDIIRNYKVMAAENIP 2232
LRFSES REGAITFTWVERSQNGGEP FHAVEPYTKKELSAVTFPDIIRNYKVMAAENIP
Sbjct: 601 LRFSESSREGAITFTWVERSQNGGEPDFHAVEPYTKKELSAVTFPDIIRNYKVMAAENIP 660
Query: 2233 ENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELDGPKGTGYIKTELISVSEVHPSRLQTT 2412
ENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELD PK TGYIKTELISVSEVHPSRLQTT
Sbjct: 661 ENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELDDPKRTGYIKTELISVSEVHPSRLQTT 720
Query: 2413 DNLLPMSPEEFDEVSRMVGPVEFD 2484
DNLLPMSPEEFDE+SR+VGP EFD
Sbjct: 721 DNLLPMSPEEFDEMSRIVGP-EFD 743
>gi|22094115|ref|NP_035616.1| (NM_011486) signal transducer and
activator of transcription 3 [Mus musculus]
Length = 722
Score = 736 bits (1899), Expect = 0.0
Identities = 370/717 (51%), Positives = 505/717 (69%), Gaps = 21/717 (2%)
Frame = +1
Query: 295 MSQWYELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLENQDWEHAANDVSFATIRFHDL 474
M+QW +LQQLD+++LEQ+HQLY DSFPME+RQ+LA W+E+QDW +AA+ S AT+ FH+L
Sbjct: 1 MAQWNQLQQLDTRYLEQLHQLYSDSFPMELRQFLAPWIESQDWAYAASKESHATLVFHNL 60
Query: 475 LSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIICNCLKEERKILENAQ 654
L ++D QYSRF E+N L QHN+R+ K+ LQ + E P++++ I+ CL EE ++L+ A
Sbjct: 61 LGEIDQQYSRFLQESNVLYQHNLRRIKQFLQSRYLEKPMEIARIVARCLWEESRLLQTAA 120
Query: 655 RFNQT--QSGNIQSTVMLDK--------------VMCIEHEIKTLEDLQDEYDFKCKTLQ 786
Q Q+ + + V+ +K V +E ++K +E+LQD++DF KTL+
Sbjct: 121 TAAQQGGQANHPTAAVVTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLK 180
Query: 787 NRE--HDTNGVAKNDQKQEQMLLQKMYLMLDNKRKEVVNKIIELLNVTELTQKALINDEL 960
++ D NG ++ +Q+ L++M LD R+ +V+++ LL+ E QK L ++EL
Sbjct: 181 SQGDMQDLNGNNQSVTRQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEEL 240
Query: 961 VEWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRXXXXXXXXXXXXYTYEHDPITK 1140
+WKRRQQ ACIGGPPN CLD+L+NW T +AES Q R +Y+ DPI +
Sbjct: 241 ADWKRRQQIACIGGPPNICLDRLENWITSLAESQLQTRQQIKKLEELQQKVSYKGDPIVQ 300
Query: 1141 NKQALWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNY 1320
++ L +R LF+ L++S+FVVERQPCMP HP RPLV+KTGVQFT K+RLLVK ELNY
Sbjct: 301 HRPMLEERIVELFRNLMKSAFVVERQPCMPMHPDRPLVIKTGVQFTTKVRLLVKFPELNY 360
Query: 1321 NLKVKVLFDKDVSERNTVKGFRKFNILGTHTKVMNMEESTNGSLAAEFRHLQLKEQK--N 1494
LK+KV DKD + ++G RKFNILGT+TKVMNMEES NGSL+AEF+HL L+EQ+ N
Sbjct: 361 QLKIKVCIDKDSGDVAALRGSRKFNILGTNTKVMNMEESNNGSLSAEFKHLTLREQRCGN 420
Query: 1495 AGARTNEGPLIVTEELHSLSFETQLCQPGLVIDLETTSLPVVVISNVSQLPSGWASILWY 1674
G + LIVTEELH ++FET++ GL IDLET SLPVVVISN+ Q+P+ WASILWY
Sbjct: 421 GGRANCDASLIVTEELHLITFETEVYHQGLKIDLETHSLPVVVISNICQMPNAWASILWY 480
Query: 1675 NMLVAEPRNLSFFLNPPCARWSQLSEVLSWQFSSVTKRGLNVDQLNMLGEKLLGPTAGPD 1854
NML P+N++FF PP W Q++EVLSWQFSS TKRGL+++QL L EKLLGP
Sbjct: 481 NMLTNNPKNVNFFTKPPIGTWDQVAEVLSWQFSSTTKRGLSIEQLTTLAEKLLGPGVNYS 540
Query: 1855 GL-IPWTRFCKENINDKNFPFWLWIESILELIKKHLLSLWNDGCIVGFISKERERALLKD 2031
G I W +FCKEN+ K F FW+W+++I++L+KK++L+LWN+G I+GFISKERERA+L
Sbjct: 541 GCQITWAKFCKENMAGKGFSFWVWLDNIIDLVKKYILALWNEGYIMGFISKERERAILST 600
Query: 2032 QQPGTFLLRFSESCREGAITFTWVERSQNGGEPYFHAVEPYTKKELSAVTFPDIIRNYKV 2211
+ PGTFLLRFSES +EG +TFTWVE+ + G+ +VEPYTK++L+ ++F +II YK+
Sbjct: 601 KPPGTFLLRFSESSKEGGVTFTWVEKDIS-GKTQIQSVEPYTKQQLNNMSFAEIIMGYKI 659
Query: 2212 MAAENIPENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELDGPKGTGYIKTELISVS 2382
M A NI +PL YLYP+I K+ AFGK Y RP E+ E E D Y+KT+ I V+
Sbjct: 660 MDATNILVSPLVYLYPDIPKEEAFGK-YCRP-ESQEHPEADPGSAAPYLKTKFICVT 714
>gi|6755670|ref|NP_035617.1| (NM_011487) signal transducer and
activator of transcription 4 [Mus musculus]
Length = 748
Score = 728 bits (1880), Expect = 0.0
Identities = 391/750 (52%), Positives = 515/750 (68%), Gaps = 20/750 (2%)
Frame = +1
Query: 295 MSQWYELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLENQDWEHAANDVSFATIRFHDL 474
MSQW ++QQL+ KFLEQV Q YDD+FPMEIR LAQW+E QDWE A+N+ + ATI +L
Sbjct: 1 MSQWNQVQQLEIKFLEQVDQFYDDNFPMEIRHLLAQWIETQDWEVASNNETMATILLQNL 60
Query: 475 LSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIICNCLKEERKILENAQ 654
L QLD+Q R S E N LL HN+++ ++ LQ F +P+ ++++I NCL+EER+IL A
Sbjct: 61 LIQLDEQLGRVSKEKNLLLIHNLKRIRKVLQGKFHGNPMHVAVVISNCLREERRILAAAN 120
Query: 655 RFNQTQ-SGNIQSTVMLDKVMCIEHEI--------------KTLEDLQDEYDFKCKTLQN 789
Q ++QS+ + ++ +EH++ K LEDLQDE+D++ KT+Q
Sbjct: 121 MPIQGPLEKSLQSSSVSERQRNVEHKVSAIKNSVQMTEQDTKYLEDLQDEFDYRYKTIQT 180
Query: 790 REH-DTNGVAKNDQKQEQMLLQKMYLMLDNKRKEVVNKIIELLNVTELTQKALINDELVE 966
+ D N + N QE + LQ+M LD KRKE ++K+ +++N T+L +++ +EL +
Sbjct: 181 MDQGDKNSILVN---QEVLTLQEMLNSLDFKRKEALSKMTQIVNETDLLMNSMLLEELQD 237
Query: 967 WKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRXXXXXXXXXXXXYTYEHDPITKNK 1146
WK+RQQ ACIGGP + LDQLQN FT++AESL Q+R TYE DPI +
Sbjct: 238 WKKRQQIACIGGPLHNGLDQLQNCFTLLAESLFQLRQQLEKLQEQSTKMTYEGDPIPAQR 297
Query: 1147 QALWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYNL 1326
L +R L L ++SFVVERQPCMPTHPQRP+VLKT +QFTVKLRLL+KL ELNY +
Sbjct: 298 AHLLERATFLIYNLFKNSFVVERQPCMPTHPQRPMVLKTLIQFTVKLRLLIKLPELNYQV 357
Query: 1327 KVKVLFDKDVSERNTVKGFRKFNILGTHTKVMNMEESTNGSLAAEFRHLQLKEQK-NAGA 1503
KVK DK+VS + R+F + GTH K M+ EES+NGSL+ EFRHLQ KE K + G+
Sbjct: 358 KVKASIDKNVSTLSN----RRFVLCGTHVKAMSSEESSNGSLSVEFRHLQPKEMKCSTGS 413
Query: 1504 RTNEGPLIVTEELHSLSFETQLCQPGLVIDLETTSLPVVVISNVSQLPSGWASILWYNML 1683
+ NEG +VTEELHS++FETQ+C GL I+LET+SLPVV+ISNVSQLP+ WASI+WYN+
Sbjct: 414 KGNEGCHMVTEELHSITFETQICLYGLTINLETSSLPVVMISNVSQLPNAWASIIWYNVS 473
Query: 1684 VAEPRNLSFFLNPPCARWSQLSEVLSWQFSSVTKRGLNVDQLNMLGEKLLGPTAGPDGLI 1863
+ +NL FF NPP QL EV+SWQFSS RGLN +QLNML EKL + DG +
Sbjct: 474 TNDSQNLVFFNNPPSVTLGQLLEVMSWQFSSYVGRGLNSEQLNMLAEKLTVQSNYNDGHL 533
Query: 1864 PWTRFCKENINDKNFPFWLWIESILELIKKHLLSLWNDGCIVGFISKERERALLKDQQPG 2043
W +FCKE++ K F FW W+E+IL+LIKKH+L LW DG I+GF+SKE+ER LLKD+ PG
Sbjct: 534 TWAKFCKEHLPGKTFTFWTWLEAILDLIKKHILPLWIDGYIMGFVSKEKERLLLKDKMPG 593
Query: 2044 TFLLRFSESCREGAITFTWVERSQNGGEPYFHAVEPYTKKELSAVTFPDIIRNYKVMAAE 2223
TFLLRFSES G ITFTWV++S+N GE FH+VEPY K LSA+ F DI+R+YKV+ AE
Sbjct: 594 TFLLRFSES-HLGGITFTWVDQSEN-GEVRFHSVEPYNKGRLSALPFADILRDYKVIMAE 651
Query: 2224 NIPENPLKYLYPNIDKDHAFGKYY-SRPKEAPEPMELDGPKGTGYIKTELISVSEVH--P 2394
NIPENPLKYLYP+I KD AFGK+Y S+P E P E G K GY+ + I +S +
Sbjct: 652 NIPENPLKYLYPDIPKDKAFGKHYSSQPCEVSRPTE-RGDK--GYVPSVFIPISTIRSDS 708
Query: 2395 SRLQTTDNLLPMSPEEFDEVSRMVGPVEFD 2484
+ Q+ +LLPMSP + + + P +
Sbjct: 709 TEPQSPSDLLPMSPSAYAVLRENLSPTTIE 738
>gi|9910572|ref|NP_064347.1| (NM_019963) signal transducer and
activator of transcription 2 [Mus musculus]
Length = 922
Score = 498 bits (1282), Expect = e-141
Identities = 303/727 (41%), Positives = 421/727 (57%), Gaps = 23/727 (3%)
Frame = +1
Query: 295 MSQWYELQQLDSKFLEQVHQLYDDSF-PMEIRQYLAQWLENQDWEHAA--NDVSFATIRF 465
M+QW LQ LDS FL+Q+HQ+Y S PM++RQ+LA W+E+Q+W AA +D + A + +
Sbjct: 1 MAQWEMLQNLDSLFLDQLHQVYSQSILPMDVRQHLATWIEDQNWREAALGSDDAKANMLY 60
Query: 466 HDLLSQLD--DQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIICNCLKEERKI 639
+L QL+ D YS S N+FLLQHN+RK R++Q F P Q++ +I N L EE++I
Sbjct: 61 FSILDQLNQWDHYSSDS--NHFLLQHNLRKFSRDIQ-TFPNGPTQLAEMIFNLLLEEQRI 117
Query: 640 LENAQRFNQTQSGNIQSTVMLDKVMCIEHEI--------------KTLEDLQDEYDFKCK 777
L AQR + Q V+ + + IE+ I + L+D QD + F+
Sbjct: 118 LNQAQRAQEVQPPPAPEAVVESQQLEIENRIQGLHVDIEFLVRSIRQLKDEQDVFSFRYT 177
Query: 778 TLQNREHDTNGVAKNDQKQEQMLLQKMYLMLDNKRKEVVNKIIELLN-VTELTQKALIND 954
++ ++ Q Q+ L+Q +D RKEV++ L+ +T L L+
Sbjct: 178 VFSLKKTSSSDP---HQSQQAQLVQATANKVDRMRKEVLDISKGLVGRLTTLVD--LLLP 232
Query: 955 ELVEWKRRQQSACIGGPPNAC-LDQLQNWFTIVAESLQQVRXXXXXXXXXXXXYTYEHDP 1131
+L EWK +QQ +CIG PP L+QL+ W T A+ L +R Y+ D
Sbjct: 233 KLDEWKVQQQKSCIGAPPPELQLEQLEQWLTAGAKFLFHLRQLLKQLKEMSHMLRYKGDM 292
Query: 1132 ITKNKQALWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQE 1311
+ + L Q+L+Q SFVVE QPCMP RPL+LKTG +FTV+ RLLV+LQE
Sbjct: 293 FGQGVDLQNAQVMELLQRLLQRSFVVETQPCMPQTLHRPLILKTGNKFTVRTRLLVRLQE 352
Query: 1312 LNYNLKVKVLFDKDVSERNTVKGFRKFNILGTHTKVMNMEESTNGSLAAEFRHLQLKEQK 1491
+ +LK +V D++ + + GFRKFNIL ++ K + EE L +F L L EQ+
Sbjct: 353 GSESLKAEVSVDRN----SDLPGFRKFNILTSNQKTLTPEEGQRQGLIWDFGFLTLVEQR 408
Query: 1492 NAGA-RTNEGPLIVTEELHSLSFETQLCQPGLVIDLETTSLPVVVISNVSQLPSGWASIL 1668
GA + N+GPL VTEELH +SF + GL + L+T +LPVV+ISN++QL WASIL
Sbjct: 409 AVGAGKGNKGPLAVTEELHVISFVVEYVYQGLKMKLQTDTLPVVIISNMNQLSIAWASIL 468
Query: 1669 WYNMLVAEPRNLSFFLNPPCARWSQLSEVLSWQFSSVTKRGLNVDQLNMLGEKLLGPTAG 1848
W+NML P+N FF P A WS L VLSWQFSS RGL+ +QL ML KL G +
Sbjct: 469 WFNMLSPNPKNQQFFCQAPKAPWSLLGPVLSWQFSSYVGRGLDSEQLGMLRTKLFGKSCK 528
Query: 1849 -PDGLIPWTRFCKENINDKNFPFWLWIESILELIKKHLLSLWNDGCIVGFISKERERALL 2025
D L+ W FCK PFW W++ ILEL+ HL LW DG I+GF+S+ +ER LL
Sbjct: 529 MEDALLSWVDFCKRESPPGKIPFWTWLDKILELVHDHLKDLWKDGRIMGFVSRNQERRLL 588
Query: 2026 KDQQPGTFLLRFSESCREGAITFTWVERSQNGGEPYFHAVEPYTKKELSAVTFPDIIRNY 2205
K GTFLLRFSE+ EG IT +WVE Q+ + ++V+PYTK+ L ++ +IIR+Y
Sbjct: 589 KKMLSGTFLLRFSET-SEGGITCSWVEH-QDDDKVEIYSVQPYTKEVLQSLPLTEIIRHY 646
Query: 2206 KVMAAENIPENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELDGPKGTGYIKTELISVSE 2385
+V+A ENIPENPL++LYP I +D AFG YY E + Y+K +LI +S
Sbjct: 647 QVLAEENIPENPLRFLYPRIPRDEAFGCYYQEKVNFEEQRK--------YLKHKLIVISN 698
Query: 2386 VHPSRLQ 2406
LQ
Sbjct: 699 RQVDELQ 705
>gi|31543780|ref|NP_035619.2| (NM_011489) signal transducer and
activator of transcription 5B [Mus musculus]
Length = 786
Score = 268 bits (685), Expect = 9e-72
Identities = 215/742 (28%), Positives = 351/742 (46%), Gaps = 47/742 (6%)
Frame = +1
Query: 295 MSQWYELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLENQDWEHAANDVSFATIRFHDL 474
M+ W + QQL L Q+ LY FP+E+R YL+QW+E+Q W+ D I+ L
Sbjct: 1 MAMWIQAQQLQGDALHQMQALYGQHFPIEVRHYLSQWIESQAWDSIDLDNPQENIKATQL 60
Query: 475 LSQLDDQYSRFSL----ENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIICNCLKEERKIL 642
L L + + + E+ FLL+ + LQ + P+++ I + L E++++
Sbjct: 61 LEGLVQELQKKAEHQVGEDGFLLKIKLGHYATQLQSTYDRCPMELVRCIRHILYNEQRLV 120
Query: 643 ENAQRFNQTQSG--------NIQSTVMLDKVMCI----EHEIKTLEDLQDEYDFKCKT-- 780
A + ++Q +++ I E+E+K L+ Q+ + + +
Sbjct: 121 REANNGSSPAGSLADAMSQKHLQINQTFEELRLITQDTENELKKLQQTQEYFIIQYQESL 180
Query: 781 -----------LQNREHDTNGVA-KNDQKQEQMLLQKMYLMLDNKRKEVVNKIIELLNVT 924
L +E + A + Q + LQ+ L R E+ K + L +
Sbjct: 181 RIQAQFAQLGQLNPQERMSRETALQQKQVSLETWLQREAQTLQQYRVELAEKHQKTLQLL 240
Query: 925 ELTQKALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRXXXXXXXXXX 1104
Q +++DEL++WKRRQQ A GGPP LD LQ+W +AE + Q R
Sbjct: 241 RKQQTIILDDELIQWKRRQQLAGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAEHLC 300
Query: 1105 XXYTYEHDPITKNKQALWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVK 1284
P+ + + + L+ S+F++E+QP P VLKT +F
Sbjct: 301 QQLPIP-GPVEEMLAEVNATITDIISALVTSTFIIEKQP--------PQVLKTQTKFAAT 351
Query: 1285 LRLLVKLQELNYNLKVKVLFDKDVSERNTVKGFRKFNILGTHTK-------VMNMEESTN 1443
+RLLV +LN ++ + +SE+ + N ++ VM ++T
Sbjct: 352 VRLLVG-GKLNVHMNPPQVKATIISEQQAKSLLKNENTRNDYSGEILNNCCVMEYHQAT- 409
Query: 1444 GSLAAEFRHLQLKEQKNAGARTNEGPLIVTEELHSLSFETQLCQPG--LVIDLETTSLPV 1617
G+L+A FR++ LK K + R G VTEE ++ F++Q G LV ++T SLPV
Sbjct: 410 GTLSAHFRNMSLKRIKRSDRR---GAGSVTEEKFTILFDSQFSVGGNELVFQVKTLSLPV 466
Query: 1618 VVISNVSQLPSGWASILWYNMLVAEPRNLSFFLNPPCARWSQLSEVLSWQFSSVTK--RG 1791
VVI + SQ + A++LW N AEP + F + P W QL E L+ +F + + RG
Sbjct: 467 VVIVHGSQDNNATATVLWDNAF-AEPGRVPFAV-PDKVLWPQLCEALNMKFKAEVQSNRG 524
Query: 1792 LNVDQLNMLGEKLLGPTAGP-----DGLIPWTRFCKENINDKNFPFWLWIESILELIKKH 1956
L + L L +KL ++ + W++F +EN+ +N+ FW W + ++E++KKH
Sbjct: 525 LTKENLVFLAQKLFNISSNHLEDYNSMSVSWSQFNRENLPGRNYTFWQWFDGVMEVLKKH 584
Query: 1957 LLSLWNDGCIVGFISKERERALLKDQQPGTFLLRFSESCREGAITFTWVERSQNGGEPYF 2136
L WNDG I+GF++K++ LL ++ GTFLLRFS+S G IT W SQ E F
Sbjct: 585 LKPHWNDGAILGFVNKQQAHDLLINKPDGTFLLRFSDS-EIGGITIAWKFDSQ---ERMF 640
Query: 2137 HAVEPYTKKELSAVTFPDIIRNYKVMAAENIPENPLKYLYPNIDKDHAFGKYYSRPKEAP 2316
+ P+T ++ S + D + + N L Y++P+ KD + KYY+ P
Sbjct: 641 WNLMPFTTRDFSIRSLADRLGDL----------NYLIYVFPDRPKDEVYSKYYT-----P 685
Query: 2317 EPMELDGPKGT-GYIKTELISV 2379
P E K GY+K ++ V
Sbjct: 686 VPCEPATAKAADGYVKPQIKQV 707
>gi|6755672|ref|NP_035618.1| (NM_011488) signal transducer and
activator of transcription 5A [Mus musculus]
Length = 793
Score = 257 bits (656), Expect = 2e-68
Identities = 207/714 (28%), Positives = 337/714 (46%), Gaps = 46/714 (6%)
Frame = +1
Query: 295 MSQWYELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLENQDWEHA----ANDVSFATIR 462
M+ W + QQL L Q+ LY FP+E+R YLAQW+E+Q W+ D AT
Sbjct: 1 MAGWIQAQQLQGDALRQMQVLYGQHFPIEVRHYLAQWIESQPWDAIDLDNPQDRGQATQL 60
Query: 463 FHDLLSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIICNCLKEERKIL 642
L+ +L + E+ FLL+ + LQ+ + P+++ I + L E++++
Sbjct: 61 LEGLVQELQKKAEHQVGEDGFLLKIKLGHYATQLQNTYDRCPMELVRCIRHILYNEQRLV 120
Query: 643 ENAQRFNQT--------QSGNIQSTVMLDKVMCI----EHEIKTLEDLQDEYDFKCKT-- 780
A + ++Q +++ I E+E+K L+ Q+ + + +
Sbjct: 121 REANNCSSPAGVLVDAMSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESL 180
Query: 781 -----------LQNREHDTNGVA-KNDQKQEQMLLQKMYLMLDNKRKEVVNKIIELLNVT 924
L +E + A + Q + LQ+ L R E+ K + L +
Sbjct: 181 RIQAQFAQLGQLNPQERMSRETALQQKQVSLETWLQREAQTLQQYRVELAEKHQKTLQLL 240
Query: 925 ELTQKALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRXXXXXXXXXX 1104
Q +++DEL++WKRRQQ A GGPP LD LQ+W +AE + Q R
Sbjct: 241 RKQQTIILDDELIQWKRRQQLAGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAEHLC 300
Query: 1105 XXYTYEHDPITKNKQALWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVK 1284
P+ + + + L+ S+F++E+QP P VLKT +F
Sbjct: 301 QQLPIP-GPVEEMLAEVNATITDIISALVTSTFIIEKQP--------PQVLKTQTKFAAT 351
Query: 1285 LRLLVKLQELNYNL---KVKVLFDKDVSERNTVKGFRKFNILG----THTKVMNMEESTN 1443
+RLLV +LN ++ +VK + ++ +K N + VM ++T
Sbjct: 352 VRLLVG-GKLNVHMNPPQVKATIISEQQAKSLLKNENTRNECSGEILNNCCVMEYHQAT- 409
Query: 1444 GSLAAEFRHLQLKEQKNAGARTNEGPLIVTEELHSLSFETQLCQPG--LVIDLETTSLPV 1617
G+L+A FR++ LK K A R E VTEE ++ FE+Q LV ++T SLPV
Sbjct: 410 GTLSAHFRNMSLKRIKRADRRGAES---VTEEKFTVLFESQFSVGSNELVFQVKTLSLPV 466
Query: 1618 VVISNVSQLPSGWASILWYNMLVAEPRNLSFFLNPPCARWSQLSEVLSWQFSSVTK--RG 1791
VVI + SQ + A++LW N AEP + F + P W QL E L+ +F + + RG
Sbjct: 467 VVIVHGSQDHNATATVLWDNAF-AEPGRVPFAV-PDKVLWPQLCEALNMKFKAEVQSNRG 524
Query: 1792 LNVDQLNMLGEKLLGPTAGP-----DGLIPWTRFCKENINDKNFPFWLWIESILELIKKH 1956
L + L L +KL ++ + W++F +EN+ N+ FW W + ++E++KKH
Sbjct: 525 LTKENLVFLAQKLFNISSNHLEDYNSMSVSWSQFNRENLPGWNYTFWQWFDGVMEVLKKH 584
Query: 1957 LLSLWNDGCIVGFISKERERALLKDQQPGTFLLRFSESCREGAITFTWVERSQNGGEPYF 2136
WNDG I+GF++K++ LL ++ GTFLLRFS+S G IT W S +
Sbjct: 585 HKPHWNDGAILGFVNKQQAHDLLINKPDGTFLLRFSDS-EIGGITIAWKFDSPDRN---L 640
Query: 2137 HAVEPYTKKELSAVTFPDIIRNYKVMAAENIPENPLKYLYPNIDKDHAFGKYYS 2298
++P+T ++ S + D + + N L Y++P+ KD F KYY+
Sbjct: 641 WNLKPFTTRDFSIRSLADRLGDL----------NYLIYVFPDRPKDEVFAKYYT 684
>gi|6678155|ref|NP_033310.1| (NM_009284) signal transducer and
activator of transcription 6 [Mus musculus]
Length = 837
Score = 182 bits (461), Expect = 9e-46
Identities = 210/752 (27%), Positives = 327/752 (42%), Gaps = 34/752 (4%)
Frame = +1
Query: 295 MSQWYELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLENQDWEHAANDVSFATIRFHDL 474
MS W + ++ E++ +LY D FP +R LA WLE+Q WE +F L
Sbjct: 1 MSLWGLISKMSP---EKLQRLYVD-FPQRLRHLLADWLESQPWEFLVGSDAFCYNMASAL 56
Query: 475 LSQLDDQYSRFSLEN---NFLLQHNIRKSKRNLQDNFQEDPIQMSMIICNCLKEERKILE 645
LS + + E N +L H L+ +Q DP+++ I L+ E+K +
Sbjct: 57 LSATVQRLQATAGEQGKGNSILPHI-----STLESIYQRDPLKLVATIRQILQGEKKAVI 111
Query: 646 NAQR-----FNQTQSGNIQSTVMLDKVMCIEHEIKTLEDLQDEYDFKCKT----LQNR-E 795
R F++ Q ++ T L + + H ++ L++ KT LQN +
Sbjct: 112 EEFRHLPGPFHRKQE-ELKFTTPLGR---LHHRVRETRLLRESLHLGPKTGQVSLQNLID 167
Query: 796 HDTNGVAKNDQKQEQMLLQKMYLMLDNKRKEVVNKIIELLNVTELTQKALINDELVEWKR 975
NG ++ +LQ L+ T + L+ + WKR
Sbjct: 168 PPLNGPGPSEDLPT--ILQGTVGDLE-------------------TTQPLVLLRIQIWKR 206
Query: 976 RQQSACIGGPPNACLDQLQNWFTIVAESLQQVRXXXXXXXXXXXXYTYEHDPITKNKQAL 1155
+QQ A G P L LQ + E Q+ E +P K + +L
Sbjct: 207 QQQLAGNGTPFEESLAGLQERCESLVEIYSQLHQEIGAASG-------ELEP--KTRASL 257
Query: 1156 WDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYNLKVK 1335
R + + L+ SSF+VE+QP P VLKT +F +R L+ LQ L + K
Sbjct: 258 ISRLDEVLRTLVTSSFLVEKQP--------PQVLKTQTKFQAGVRFLLGLQFLGTSTKPP 309
Query: 1336 VLFDKDVSERNTVKGFRKFNIL-GTHTKVMNMEESTNGSLAAE-----------FRHLQL 1479
++ V+E+ R+ ++ G T V + E N ++ E F++L L
Sbjct: 310 MVRADMVTEKQA----RELSLSQGPGTGVESTGEIMNNTVPLENSIPSNCCSALFKNLLL 365
Query: 1480 KEQKNAGARTNEGPLIVTEELHSLSFETQ--LCQPGLVIDLETTSLPVVVISNVSQLPSG 1653
K+ K + E VTEE ++ F T L L+I L+ SL +VVI + +Q +
Sbjct: 366 KKIKRCERKGTES---VTEEKCAVLFSTSFTLGPNKLLIQLQALSLSLVVIVHGNQDNNA 422
Query: 1654 WASILWYNMLVAEPRNLSFFLNPPCARWSQLSEVLSWQFSSV--TKRGLNVDQLNMLGEK 1827
A+ILW N +E + F + W ++ E L+ +F T RGL + L +K
Sbjct: 423 KATILWDNAF-SEMDRVPFVVGERVP-WEKMCETLNLKFMVEVGTSRGLLPEHFLFLAQK 480
Query: 1828 L-----LGPTAGPDGLIPWTRFCKENINDKNFPFWLWIESILELIKKHLLSLWNDGCIVG 1992
+ L A + W++F KE + + F FW W + +L+L K+ L S W+D I+G
Sbjct: 481 IFNDNSLSVEAFQHRCVSWSQFNKEILLGRGFTFWQWFDGVLDLTKRCLRSYWSDRLIIG 540
Query: 1993 FISKERERALLKDQQPGTFLLRFSESCREGAITFTWVERSQNGGEPYFHAVEPYTKKELS 2172
FISK+ +LL ++ GTFLLRFS+S G IT V R Q+G ++P++ K+LS
Sbjct: 541 FISKQYVTSLLLNEPDGTFLLRFSDS-EIGGITIAHVIRGQDGSS-QIENIQPFSAKDLS 598
Query: 2173 AVTFPDIIRNYKVMAAENIPENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELDGPKGTG 2352
+ D IR+ LK LYP KD AF +Y PE M G G G
Sbjct: 599 IRSLGDRIRDLA----------QLKNLYPKKPKDEAFRSHYK-----PEQM---GKDGRG 640
Query: 2353 YIKTELISVSEVHPSRLQTTDNLLPMSPEEFD 2448
Y+ T I ++ L T + +P +D
Sbjct: 641 YVST-TIKMTVERDQPLPTPEPQMPAMVPPYD 671
>gi|9507021|ref|NP_062273.1| (NM_019400) rabaptin 5; neurocrescin;
RAB5 effector protein [Mus musculus]
Length = 862
Score = 37.4 bits (85), Expect = 0.035
Identities = 53/241 (21%), Positives = 94/241 (38%), Gaps = 12/241 (4%)
Frame = +1
Query: 301 QWYELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLENQDWEHAANDVSFATIRFHDLLS 480
QW E +++ + Y+ F + + Q AQW + + E A +++ DL
Sbjct: 109 QWREEVASLQAIMKETVRDYEHQFHLRLEQERAQWAQYR--ESAEREIA-------DLRR 159
Query: 481 QLDDQYSRFSLENNFLLQHNIRKSKRN-----------LQDNFQEDPIQMSMIICNCLKE 627
+L + +LEN + R+ L+D E ++ + + +KE
Sbjct: 160 RLSEGQEEENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVKE 219
Query: 628 ERKILENAQRFNQTQSGNIQSTVMLDKVMCIEHEIKTLEDLQDEYDFKCKTLQNREHDTN 807
LE A++ +T + + K + E E L+ E C L+ N
Sbjct: 220 LNHYLE-AEKSCRTDLEMYVAVLNTQKSVLQE----DAEKLRKELHEVCHLLEQERQQHN 274
Query: 808 GVAKNDQK-QEQMLLQKMYLMLDNKRKEVVNKIIELLNVTELTQKALINDELVEWKRRQQ 984
+ QK +Q L + LM D +R E+V +L V EL +K DE +R+
Sbjct: 275 QLKHTWQKANDQFLESQRLLMRDMQRMEIVLTSEQLRQVEELKKKDQEEDEQQRVNKRKD 334
Query: 985 S 987
+
Sbjct: 335 N 335
>gi|23510277|ref|NP_700455.1| (NM_153406) RIKEN cDNA 4932439K10;
9530057A13Rik [Mus musculus]
Length = 776
Score = 35.4 bits (80), Expect = 0.13
Identities = 38/192 (19%), Positives = 84/192 (42%), Gaps = 2/192 (1%)
Frame = +1
Query: 415 QDWEHAANDVSFATIRFHDLLSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQ 594
+D H ND + R D +++++D+Y F E ++ ++ + L+ +E +
Sbjct: 287 EDLAHTRNDAN----RLQDTIAKVEDEYRAFQEEAKKQIE-DLNMTLEKLRSELEEKDTE 341
Query: 595 MSMIICNCLKEERKILENAQRFNQTQSGNIQSTVMLDKVMCIEHEIKTLEDLQDEYDFKC 774
S + + I E Q ++ + +++ +E+ +K L+D + + + +
Sbjct: 342 RSDM-------KETIFELEDEVEQHRAVKLHDNLIISD---LENTVKKLQDQKHDMEREI 391
Query: 775 KTLQNREHDTNGVAKNDQKQEQMLLQKMYLMLDNKRKEVVNKIIELLNVTELTQK--ALI 948
KTL R + + + +Q Q LQ ++ ++ + E +I +L Q+ +
Sbjct: 392 KTLHRRLREESA----EWRQFQADLQTAVVIANDIKSEAQEEIGDLKRRLHEAQEKNEKL 447
Query: 949 NDELVEWKRRQQ 984
EL E K R+Q
Sbjct: 448 TKELEEIKSRKQ 459
>gi|13540492|ref|NP_082160.1| (NM_027884) tensin [Mus musculus]
Length = 624
Score = 34.7 bits (78), Expect = 0.23
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +1
Query: 1996 ISKERERALLKDQQPGTFLLRFSESCR 2076
IS+E+ ALLKDQ+PG F++R S S R
Sbjct: 357 ISREQAIALLKDQEPGAFIIRDSHSFR 383
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 7,155,815
Number of sequences in database: 15,330
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41341661
Number of Sequences: 15330
Number of extensions: 1066813
Number of successful extensions: 3495
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 2221
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 686
Number of HSP's gapped (non-prelim): 2910
length of query: 905
length of database: 7,155,815
effective HSP length: 49
effective length of query: 856
effective length of database: 6,404,645
effective search space: 5482376120
effective search space used: 5482376120
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)