Search to RefSeq (Human) database
Query= 20030531C-003380 (20030531C-003380) 20030531C-003380
(941 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,244 sequences; 10,046,356 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4758484|ref|NP_004823.1| (NM_004832) glutathione-S-transfera... 89 6e-18
Alignment gi|23397674|ref|NP_055028.2| (NM_014213) homeo box D9; homeobox... 33 0.22
Alignment gi|28274709|ref|NP_009087.1| (NM_007156) zinc finger, X-linked,... 33 0.29
Alignment gi|19923529|ref|NP_060853.2| (NM_018383) hypothetical protein F... 32 0.65
Alignment gi|18379346|ref|NP_055793.1| (NM_014978) VPS10 domain receptor ... 32 0.85
Alignment gi|31543906|ref|NP_060052.3| (NM_017582) ubiquitin-conjugating ... 30 1.9
Alignment gi|5730045|ref|NP_006508.1| (NM_006517) solute carrier family 1... 30 1.9
Alignment gi|9506643|ref|NP_061906.1| (NM_019033) hypothetical protein FL... 30 1.9
Alignment gi|21703362|ref|NP_663320.1| (NM_145345) socius [Homo sapiens] 30 1.9
Alignment gi|17978502|ref|NP_001842.2| (NM_001851) alpha 1 type IX collag... 30 2.5
>gi|4758484|ref|NP_004823.1| (NM_004832) glutathione-S-transferase
like; glutathione transferase omega [Homo sapiens]
Length = 241
Score = 88.6 bits (218), Expect = 6e-18
Identities = 43/50 (86%), Positives = 45/50 (90%)
Frame = +1
Query: 94 MSGGSARSLGKGSAPPGPVPEGLIRVYSMRFCPFAQRTLLVLNAKGIR*E 243
MSG SARSLGKGSAPPGPVPEG IR+YSMRFCPFA+RT LVL AKGIR E
Sbjct: 1 MSGESARSLGKGSAPPGPVPEGSIRIYSMRFCPFAERTRLVLKAKGIRHE 50
>gi|23397674|ref|NP_055028.2| (NM_014213) homeo box D9; homeobox
protein Hox-D9; Hox-4.3, mouse, homolog of [Homo
sapiens]
Length = 342
Score = 33.5 bits (75), Expect = 0.22
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -2
Query: 304 PLAPLAAAGSWPERRAAAALV-LTGFPWHSGPGESSGRKDRISCCRHGSGP-RGPAPGAH 131
P PLAA+ S P R + + L GFP +G G G G GP RGP+PG
Sbjct: 91 PPPPLAASASEPGRYVRSWMEPLPGFPGGAGGGGGGG----------GGGPGRGPSPGPS 140
Query: 130 FPSPG 116
P+ G
Sbjct: 141 GPANG 145
>gi|28274709|ref|NP_009087.1| (NM_007156) zinc finger, X-linked,
duplicated A [Homo sapiens]
Length = 799
Score = 33.1 bits (74), Expect = 0.29
Identities = 26/68 (38%), Positives = 32/68 (46%), Gaps = 3/68 (4%)
Frame = -2
Query: 295 PLAAAGSWPERRAAAALVLTGFPWHSGPGESSGRKDRISCCRHGSGPRGPAPGAHFPSPG 116
P + AG P RR L+L P GPG R++ S G GP AP H PS G
Sbjct: 32 PDSPAGQVPTRR----LLLPRGPQDGGPGR---RREEASTASRGPGPSLFAPRPHQPSGG 84
Query: 115 ---FWLIL 101
F+L+L
Sbjct: 85 GDDFFLVL 92
>gi|19923529|ref|NP_060853.2| (NM_018383) hypothetical protein
FLJ11294 [Homo sapiens]
Length = 1336
Score = 32.0 bits (71), Expect = 0.65
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Frame = -2
Query: 229 PWHSGPGESSGRKDRI----SCCRHGSGPRGPAPGAHFPSPG 116
PWH GPG S R+ S R G G GP P P G
Sbjct: 1234 PWHDGPGTSEHREMEAPGGPSEDRGGKGRGGPGPAQRVPKSG 1275
>gi|18379346|ref|NP_055793.1| (NM_014978) VPS10 domain receptor
protein SORCS 3 [Homo sapiens]
Length = 1222
Score = 31.6 bits (70), Expect = 0.85
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Frame = -2
Query: 304 PLAPLAAAGSWPER----RAAAALVLTGFPWHSGPGESSGRKDRISCCRHGSGPRGPAPG 137
PL+P A A WPE R AA L P P + GR + G+ P G G
Sbjct: 58 PLSPRAVASQWPEELASARRAAVLGRRAGP-ELLPQQGGGRGGEMQVEAGGTSPAGERRG 116
Query: 136 AHFPSP 119
P+P
Sbjct: 117 RGIPAP 122
>gi|31543906|ref|NP_060052.3| (NM_017582) ubiquitin-conjugating
enzyme E2Q [Homo sapiens]
Length = 422
Score = 30.4 bits (67), Expect = 1.9
Identities = 30/94 (31%), Positives = 37/94 (38%), Gaps = 4/94 (4%)
Frame = +3
Query: 57 QLRKRAQPLLRQDVWRISQKPGEGKCAPGAGPRGPDPCLQHEILSFRPEDSPGPECQGNP 236
Q + + QP Q + PG G PG GP GP PCL+ E+ G E
Sbjct: 5 QPQGQQQPGPGQQLGGQGAAPGAGG-GPGGGP-GPGPCLRRELKLLESIFHRGHE----- 57
Query: 237 VRTKAAAALLSGQE----PAAASGASGNLRQGPH 326
R + A+A L A A GA GPH
Sbjct: 58 -RFRIASACLDELSCEFLLAGAGGAGAGAAPGPH 90
>gi|5730045|ref|NP_006508.1| (NM_006517) solute carrier family 16
(monocarboxylic acid transporters), member 2; X-linked
PEST-containing transporter [Homo sapiens]
Length = 613
Score = 30.4 bits (67), Expect = 1.9
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 191 LSPRGL-SWS*MPRESGENQGSSSSPLRPRTSCCKRREWESQTGS 322
LS GL SW P G GSSS P +SC R +++ Q+GS
Sbjct: 21 LSRDGLASWGAEPGGGGSGSGSSSPP--SSSSCSSRNKYQPQSGS 63
>gi|9506643|ref|NP_061906.1| (NM_019033) hypothetical protein
FLJ11235 [Homo sapiens]
Length = 273
Score = 30.4 bits (67), Expect = 1.9
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 277 SWPERRAAAALVLTGFPWHSGPGESS-GRKDRISCCRHGSGPRGPAPGAHFPSPG 116
SW A+ G P G GESS GR G P G +PGA P PG
Sbjct: 121 SWERGGRASGGCALGAPGRRGSGESSLGRAS-------GGAPGGSSPGACGPGPG 168
>gi|21703362|ref|NP_663320.1| (NM_145345) socius [Homo sapiens]
Length = 472
Score = 30.4 bits (67), Expect = 1.9
Identities = 21/57 (36%), Positives = 25/57 (43%)
Frame = +3
Query: 51 AGQLRKRAQPLLRQDVWRISQKPGEGKCAPGAGPRGPDPCLQHEILSFRPEDSPGPE 221
AG + K A L + + S K G C PG GP GP PC P SP P+
Sbjct: 426 AGLVPKAALLLRARRAPKSSLKFSPGPCPPGPGP-GPSPC---------PGPSPSPQ 472
>gi|17978502|ref|NP_001842.2| (NM_001851) alpha 1 type IX collagen
isoform 1 precursor; collagen IX, alpha-1 polypeptide;
cartilage-specific short collagen [Homo sapiens]
Length = 921
Score = 30.0 bits (66), Expect = 2.5
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = +1
Query: 22 GESGDRLPESLGNSGRELNPCCAKMSGGSARSLGKGSAPPGPVPEGL 162
GE G R P+ L S EL P + G SLG P P P GL
Sbjct: 613 GEVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPPGL 659
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 10,046,356
Number of sequences in database: 19,244
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21130794
Number of Sequences: 19244
Number of extensions: 596271
Number of successful extensions: 2341
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2331
length of query: 313
length of database: 10,046,356
effective HSP length: 47
effective length of query: 266
effective length of database: 9,141,888
effective search space: 2431742208
effective search space used: 2431742208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search to RefSeq (Mouse) database
Query= 20030531C-003380 (20030531C-003380) 20030531C-003380
(941 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
15,330 sequences; 7,155,815 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|6754090|ref|NP_034492.1| (NM_010362) glutathione S-transfera... 91 1e-18
Alignment gi|21311857|ref|NP_080895.1| (NM_026619) RIKEN cDNA 1700020F09 ... 79 4e-15
Alignment gi|6681089|ref|NP_031830.1| (NM_007804) cut-like 2 [Mus musculus] 32 0.60
Alignment gi|14010843|ref|NP_076188.1| (NM_023699) cytoplasmic nuclear fa... 31 1.0
Alignment gi|12963561|ref|NP_075673.1| (NM_023184) Kruppel-like factor 15... 30 1.7
Alignment gi|31541872|ref|NP_081591.2| (NM_027315) ubiquitin-conjugating ... 30 1.7
Alignment gi|21450245|ref|NP_659132.1| (NM_144883) RIKEN cDNA 5430407P10 ... 30 1.7
Alignment gi|21322236|ref|NP_034589.1| (NM_010459) homeo box B4 [Mus musc... 30 1.7
Alignment gi|6754874|ref|NP_035059.1| (NM_010929) Notch gene homolog 4; N... 29 3.0
Alignment gi|7106451|ref|NP_035880.1| (NM_011750) zinc finger protein 162... 29 3.0
>gi|6754090|ref|NP_034492.1| (NM_010362) glutathione S-transferase
omega 1; glutathione-S-transferase like; glutathione
S-transferase like [Mus musculus]
Length = 240
Score = 90.5 bits (223), Expect = 1e-18
Identities = 44/50 (88%), Positives = 46/50 (92%)
Frame = +1
Query: 94 MSGGSARSLGKGSAPPGPVPEGLIRVYSMRFCPFAQRTLLVLNAKGIR*E 243
MSG S+RSLGKGSAPPGPVPEG IRVYSMRFCPFAQRTL+VL AKGIR E
Sbjct: 1 MSGESSRSLGKGSAPPGPVPEGQIRVYSMRFCPFAQRTLMVLKAKGIRHE 50
>gi|21311857|ref|NP_080895.1| (NM_026619) RIKEN cDNA 1700020F09 [Mus
musculus]
Length = 248
Score = 78.6 bits (192), Expect = 4e-15
Identities = 38/59 (64%), Positives = 44/59 (74%)
Frame = +1
Query: 94 MSGGSARSLGKGSAPPGPVPEGLIRVYSMRFCPFAQRTLLVLNAKGIR*EPRQQQLSSQ 270
MSG +R LGKGS PPGPVPEG+IR+YSMRFCP++ R LVL AKGIR E L S+
Sbjct: 1 MSGDLSRCLGKGSCPPGPVPEGVIRIYSMRFCPYSHRARLVLKAKGIRHEVININLKSK 59
>gi|6681089|ref|NP_031830.1| (NM_007804) cut-like 2 [Mus musculus]
Length = 1426
Score = 31.6 bits (70), Expect = 0.60
Identities = 23/77 (29%), Positives = 34/77 (43%)
Frame = +3
Query: 105 ISQKPGEGKCAPGAGPRGPDPCLQHEILSFRPEDSPGPECQGNPVRTKAAAALLSGQEPA 284
+S P + P GP GP ++ LS P +PG G+ + +K PA
Sbjct: 390 LSPSPAQPLLGPSLGPDGP----RNFSLSPFPSLAPGERLAGDSLLSKHMMG------PA 439
Query: 285 AASGASGNLRQGPHSFF 335
A G +GNL P +F+
Sbjct: 440 AFKGETGNLLAFPPTFY 456
>gi|14010843|ref|NP_076188.1| (NM_023699) cytoplasmic nuclear factor
of activated T-cells 4 [Mus musculus]
Length = 901
Score = 30.8 bits (68), Expect = 1.0
Identities = 20/56 (35%), Positives = 23/56 (40%), Gaps = 20/56 (35%)
Frame = -2
Query: 217 GPGESSGRKDRISCCR--------HGSGPRG------PAPGAH------FPSPGFW 110
GPGE +D CCR +G+ P G P PG H PSPG W
Sbjct: 30 GPGEELDSEDTPPCCRLALGEPLPYGAAPIGIPRPPPPRPGMHSPPPRPAPSPGTW 85
>gi|12963561|ref|NP_075673.1| (NM_023184) Kruppel-like factor 15
[Mus musculus]
Length = 415
Score = 30.0 bits (66), Expect = 1.7
Identities = 17/37 (45%), Positives = 19/37 (50%)
Frame = +1
Query: 43 PESLGNSGRELNPCCAKMSGGSARSLGKGSAPPGPVP 153
PES G P SGG A+S G+G A GPVP
Sbjct: 183 PESAGRE--RCTPPPGGTSGGGAQSAGEGPAHDGPVP 217
>gi|31541872|ref|NP_081591.2| (NM_027315) ubiquitin-conjugating
enzyme E2Q [Mus musculus]
Length = 422
Score = 30.0 bits (66), Expect = 1.7
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Frame = +3
Query: 117 PGEGKCAPGAGPRGPDPCLQHEILSFRPEDSPGPECQGNPVRTKAAAALLSGQE----PA 284
PG G PG GP GP PCL+ E+ G E R + A+A L A
Sbjct: 25 PGAGG-GPGGGP-GPGPCLRRELKLLESIFHRGHE------RFRIASACLDELSCEFLLA 76
Query: 285 AASGASGNLRQGPH 326
A GA GPH
Sbjct: 77 GAGGAGAGAAPGPH 90
>gi|21450245|ref|NP_659132.1| (NM_144883) RIKEN cDNA 5430407P10 [Mus
musculus]
Length = 471
Score = 30.0 bits (66), Expect = 1.7
Identities = 17/44 (38%), Positives = 22/44 (49%), Gaps = 3/44 (6%)
Frame = +3
Query: 210 PGPECQGNPVRTKAAAALLSGQEPAAASGASG---NLRQGPHSF 332
PG C G P R + + A+ + Q PA A+G LR P SF
Sbjct: 343 PGAPCAGVPARAQQSRAVQTEQPPALANGFQSVHEALRSEPSSF 386
>gi|21322236|ref|NP_034589.1| (NM_010459) homeo box B4 [Mus
musculus]
Length = 250
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/51 (35%), Positives = 23/51 (44%)
Frame = -1
Query: 251 CLGSHRIPLAFRTRRVLWAKGQNLML*TRIRPSGTGPGGALPFPRLLADPP 99
CL +I + F+ RR+ W K L T+IR GT P R PP
Sbjct: 199 CLSERQIKIWFQNRRMKWKKDHKLPN-TKIRSGGTAGAAGGPPGRPNGGPP 248
>gi|6754874|ref|NP_035059.1| (NM_010929) Notch gene homolog 4; Notch
gene homolog 4, (Drosophila) [Mus musculus]
Length = 1964
Score = 29.3 bits (64), Expect = 3.0
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Frame = +3
Query: 138 PGAGPRGPDPCLQHEILSFRP------------EDSPGPECQGNPVRTKAAAALLSGQEP 281
PG GP P PCL + + P DSPGP CQ R A+ G +
Sbjct: 1128 PGCGP--PSPCLHNGTCTETPGLGNPGFQCTCPPDSPGPRCQ----RPGASGCEGRGGDG 1181
Query: 282 AAASGASG 305
+G SG
Sbjct: 1182 TCDAGCSG 1189
>gi|7106451|ref|NP_035880.1| (NM_011750) zinc finger protein 162
[Mus musculus]
Length = 653
Score = 29.3 bits (64), Expect = 3.0
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -2
Query: 289 AAAGSWPERRAAAALVLTGFPW-HSGPGESSGRKDRISCCRHGSGPRGPAPGAH-FPSP 119
AA S P + + + PW +SGP E+ R HG GP GP G H FP P
Sbjct: 347 AAPASNPPPPSLMSTTQSRPPWMNSGPSEN-----RPYHGMHGGGPGGPGGGPHSFPHP 400
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 7,155,815
Number of sequences in database: 15,330
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14898758
Number of Sequences: 15330
Number of extensions: 407411
Number of successful extensions: 1530
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1522
length of query: 313
length of database: 7,155,815
effective HSP length: 47
effective length of query: 266
effective length of database: 6,435,305
effective search space: 1711791130
effective search space used: 1711791130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)