Search to RefSeq (Human) database
Query= 20030531C-003564 (20030531C-003564) 20030531C-003564
(917 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,244 sequences; 10,046,356 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4826667|ref|NP_004922.1| (NM_004931) CD8 antigen beta polype... 230 1e-60
Alignment gi|27886639|ref|NP_757362.1| (NM_172213) CD8 antigen beta polyp... 226 1e-59
Alignment gi|27886635|ref|NP_742099.1| (NM_172101) CD8 antigen beta polyp... 226 1e-59
Alignment gi|27886631|ref|NP_742097.1| (NM_172099) CD8 antigen beta polyp... 226 1e-59
Alignment gi|27886637|ref|NP_742100.1| (NM_172102) CD8 antigen beta polyp... 207 6e-54
Alignment gi|27886633|ref|NP_742098.1| (NM_172100) CD8 antigen beta polyp... 207 6e-54
Alignment gi|18426911|ref|NP_542970.1| (NM_080792) protein tyrosine phosp... 37 0.020
Alignment gi|5032141|ref|NP_005807.1| (NM_005816) T cell activation, incr... 35 0.057
Alignment gi|7427517|ref|NP_005520.2| (NM_005529) heparan sulfate proteog... 35 0.074
Alignment gi|31083306|ref|NP_114141.1| (NM_031935) hemicentin; fibulin 6 ... 34 0.13
>gi|4826667|ref|NP_004922.1| (NM_004931) CD8 antigen beta
polypeptide 1 isoform 5 precursor; T-cell surface
glycoprotein CD8 beta chain; antigen CD8B [Homo sapiens]
Length = 210
Score = 230 bits (586), Expect = 1e-60
Identities = 115/210 (54%), Positives = 144/210 (67%), Gaps = 1/210 (0%)
Frame = +2
Query: 23 MQPRLWLLIAAQLSTLHGGSALLQTPSSVMAQTNQMVKLSCEARTFPTNTRIYWLRLRQA 202
M+PRLWLL+AAQL+ LHG S L QTP+ + QTN+MV LSCEA+ +N RIYWLR RQA
Sbjct: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
Query: 203 PSANSHYEFLALWIPNGNPVYGKETEKQ-LTVLQDSSRYLLQLRHVKPADSGNYFCMAVG 379
PS++SH+EFLALW ++G+E E++ + V +D+SR++L L VKP DSG YFCM VG
Sbjct: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
Query: 380 NPELTFGKGTRLSVVDVFPTTAQPTKKTRPKKKICRLPNLVPPKGPACAPXXXXXXXXXX 559
+PELTFGKGT+LSVVD PTTAQPTKK+ KK++CRLP KGP C+P
Sbjct: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180
Query: 560 XXXXXXXXXXXHVYCLQRRAWHRLMKQFCK 649
H+ C +RRA R MKQF K
Sbjct: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQFYK 210
>gi|27886639|ref|NP_757362.1| (NM_172213) CD8 antigen beta
polypeptide 1 isoform 2 precursor; T-cell surface
glycoprotein CD8 beta chain; antigen CD8B [Homo sapiens]
Length = 243
Score = 226 bits (577), Expect = 1e-59
Identities = 113/207 (54%), Positives = 142/207 (68%), Gaps = 1/207 (0%)
Frame = +2
Query: 23 MQPRLWLLIAAQLSTLHGGSALLQTPSSVMAQTNQMVKLSCEARTFPTNTRIYWLRLRQA 202
M+PRLWLL+AAQL+ LHG S L QTP+ + QTN+MV LSCEA+ +N RIYWLR RQA
Sbjct: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
Query: 203 PSANSHYEFLALWIPNGNPVYGKETEKQ-LTVLQDSSRYLLQLRHVKPADSGNYFCMAVG 379
PS++SH+EFLALW ++G+E E++ + V +D+SR++L L VKP DSG YFCM VG
Sbjct: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
Query: 380 NPELTFGKGTRLSVVDVFPTTAQPTKKTRPKKKICRLPNLVPPKGPACAPXXXXXXXXXX 559
+PELTFGKGT+LSVVD PTTAQPTKK+ KK++CRLP KGP C+P
Sbjct: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180
Query: 560 XXXXXXXXXXXHVYCLQRRAWHRLMKQ 640
H+ C +RRA R MKQ
Sbjct: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQ 207
>gi|27886635|ref|NP_742099.1| (NM_172101) CD8 antigen beta
polypeptide 1 isoform 3 precursor; T-cell surface
glycoprotein CD8 beta chain; antigen CD8B [Homo sapiens]
Length = 221
Score = 226 bits (577), Expect = 1e-59
Identities = 113/207 (54%), Positives = 142/207 (68%), Gaps = 1/207 (0%)
Frame = +2
Query: 23 MQPRLWLLIAAQLSTLHGGSALLQTPSSVMAQTNQMVKLSCEARTFPTNTRIYWLRLRQA 202
M+PRLWLL+AAQL+ LHG S L QTP+ + QTN+MV LSCEA+ +N RIYWLR RQA
Sbjct: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
Query: 203 PSANSHYEFLALWIPNGNPVYGKETEKQ-LTVLQDSSRYLLQLRHVKPADSGNYFCMAVG 379
PS++SH+EFLALW ++G+E E++ + V +D+SR++L L VKP DSG YFCM VG
Sbjct: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
Query: 380 NPELTFGKGTRLSVVDVFPTTAQPTKKTRPKKKICRLPNLVPPKGPACAPXXXXXXXXXX 559
+PELTFGKGT+LSVVD PTTAQPTKK+ KK++CRLP KGP C+P
Sbjct: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180
Query: 560 XXXXXXXXXXXHVYCLQRRAWHRLMKQ 640
H+ C +RRA R MKQ
Sbjct: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQ 207
>gi|27886631|ref|NP_742097.1| (NM_172099) CD8 antigen beta
polypeptide 1 isoform 1 precursor; T-cell surface
glycoprotein CD8 beta chain; antigen CD8B [Homo sapiens]
Length = 246
Score = 226 bits (577), Expect = 1e-59
Identities = 113/207 (54%), Positives = 142/207 (68%), Gaps = 1/207 (0%)
Frame = +2
Query: 23 MQPRLWLLIAAQLSTLHGGSALLQTPSSVMAQTNQMVKLSCEARTFPTNTRIYWLRLRQA 202
M+PRLWLL+AAQL+ LHG S L QTP+ + QTN+MV LSCEA+ +N RIYWLR RQA
Sbjct: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
Query: 203 PSANSHYEFLALWIPNGNPVYGKETEKQ-LTVLQDSSRYLLQLRHVKPADSGNYFCMAVG 379
PS++SH+EFLALW ++G+E E++ + V +D+SR++L L VKP DSG YFCM VG
Sbjct: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
Query: 380 NPELTFGKGTRLSVVDVFPTTAQPTKKTRPKKKICRLPNLVPPKGPACAPXXXXXXXXXX 559
+PELTFGKGT+LSVVD PTTAQPTKK+ KK++CRLP KGP C+P
Sbjct: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180
Query: 560 XXXXXXXXXXXHVYCLQRRAWHRLMKQ 640
H+ C +RRA R MKQ
Sbjct: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQ 207
Score = 30.8 bits (68), Expect = 1.4
Identities = 19/43 (44%), Positives = 21/43 (48%)
Frame = +1
Query: 568 AGVLGCCCPCILPAEESLASPHETVL*VSREYAFGVLLQKYIG 696
+G CCC IL +SREY FGVLLQK IG
Sbjct: 217 SGFTTCCCFQILQ--------------MSREYGFGVLLQKDIG 245
>gi|27886637|ref|NP_742100.1| (NM_172102) CD8 antigen beta
polypeptide 1 isoform 4 precursor; T-cell surface
glycoprotein CD8 beta chain; antigen CD8B [Homo sapiens]
Length = 213
Score = 207 bits (528), Expect = 6e-54
Identities = 101/165 (61%), Positives = 127/165 (76%), Gaps = 1/165 (0%)
Frame = +2
Query: 23 MQPRLWLLIAAQLSTLHGGSALLQTPSSVMAQTNQMVKLSCEARTFPTNTRIYWLRLRQA 202
M+PRLWLL+AAQL+ LHG S L QTP+ + QTN+MV LSCEA+ +N RIYWLR RQA
Sbjct: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
Query: 203 PSANSHYEFLALWIPNGNPVYGKETEKQ-LTVLQDSSRYLLQLRHVKPADSGNYFCMAVG 379
PS++SH+EFLALW ++G+E E++ + V +D+SR++L L VKP DSG YFCM VG
Sbjct: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
Query: 380 NPELTFGKGTRLSVVDVFPTTAQPTKKTRPKKKICRLPNLVPPKG 514
+PELTFGKGT+LSVVD PTTAQPTKK+ KK++CRLP KG
Sbjct: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKG 165
>gi|27886633|ref|NP_742098.1| (NM_172100) CD8 antigen beta
polypeptide 1 isoform 6 precursor; T-cell surface
glycoprotein CD8 beta chain; antigen CD8B [Homo sapiens]
Length = 168
Score = 207 bits (528), Expect = 6e-54
Identities = 101/165 (61%), Positives = 127/165 (76%), Gaps = 1/165 (0%)
Frame = +2
Query: 23 MQPRLWLLIAAQLSTLHGGSALLQTPSSVMAQTNQMVKLSCEARTFPTNTRIYWLRLRQA 202
M+PRLWLL+AAQL+ LHG S L QTP+ + QTN+MV LSCEA+ +N RIYWLR RQA
Sbjct: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
Query: 203 PSANSHYEFLALWIPNGNPVYGKETEKQ-LTVLQDSSRYLLQLRHVKPADSGNYFCMAVG 379
PS++SH+EFLALW ++G+E E++ + V +D+SR++L L VKP DSG YFCM VG
Sbjct: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
Query: 380 NPELTFGKGTRLSVVDVFPTTAQPTKKTRPKKKICRLPNLVPPKG 514
+PELTFGKGT+LSVVD PTTAQPTKK+ KK++CRLP KG
Sbjct: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKG 165
>gi|18426911|ref|NP_542970.1| (NM_080792) protein tyrosine
phosphatase, non-receptor type substrate 1 precursor;
myd-1 antigen; signal regulatory protein, alpha type 2;
SHP substrate-1; brain-immunoglobulin-like molecule with
tyrosine-based activation motifs; signal regulatory
protein, alpha type 1; tyrosine phosphatase SHP
substrate 1; macrophage fusion receptor [Homo sapiens]
Length = 504
Score = 37.0 bits (84), Expect = 0.020
Identities = 43/169 (25%), Positives = 68/169 (39%), Gaps = 11/169 (6%)
Frame = +2
Query: 8 PGRAKMQPRLWLLIAAQL--STLHGGSAL--LQTPSSVMAQTNQMVKLSCEARTFPTNTR 175
P ++ P L LL+AA S + G L +Q SV+ + L C A +
Sbjct: 6 PAPGRLGPLLCLLLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTATSLIPVGP 65
Query: 176 IYWLRLRQAPSANSHYEFLALWIPNGNPVYGKETEKQLTVLQDSSRYLLQLRHVKPADSG 355
I W R P Y P V LT +++ + +++ ++ PAD+G
Sbjct: 66 IQWFR-GAGPGRELIYNQKEGHFPRVTTV------SDLTK-RNNMDFSIRIGNITPADAG 117
Query: 356 NYFCMAV--GNP---ELTFGKGTRLSV--VDVFPTTAQPTKKTRPKKKI 481
Y+C+ G+P E G GT LSV P + P + P+ +
Sbjct: 118 TYYCVKFRKGSPDDVEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTV 166
>gi|5032141|ref|NP_005807.1| (NM_005816) T cell activation,
increased late expression; CD96 antigen; tactile protein
[Homo sapiens]
Length = 569
Score = 35.4 bits (80), Expect = 0.057
Identities = 26/105 (24%), Positives = 49/105 (45%), Gaps = 5/105 (4%)
Frame = +2
Query: 89 LQTPSSVMAQTNQMVKLSCEARTFPTNTRIYWLRLRQAPSANSHYEFLALWIPNGN--PV 262
+ T +V A V L+C+ +T ++ W ++ + + +A++ P
Sbjct: 27 VNTEENVYATLGSDVNLTCQTQTVGFFVQMQWSKV------TNKIDLIAVYHPQYGFYCA 80
Query: 263 YGKETEKQLTVLQ---DSSRYLLQLRHVKPADSGNYFCMAVGNPE 388
YG+ E +T + + S++ L LR++ + SG Y CM V PE
Sbjct: 81 YGRPCESLVTFTETPENGSKWTLHLRNMSCSVSGRYECMLVLYPE 125
>gi|7427517|ref|NP_005520.2| (NM_005529) heparan sulfate proteoglycan
2 (perlecan); heparan sulfate proteoglycan of basement
membrane (perlecan); endorepellin (domain V region of
perlecan) [Homo sapiens]
Length = 4393
Score = 35.0 bits (79), Expect = 0.074
Identities = 14/22 (63%), Positives = 15/22 (67%)
Frame = +2
Query: 320 LQLRHVKPADSGNYFCMAVGNP 385
L+L HV PADSG Y C A G P
Sbjct: 2978 LRLHHVSPADSGEYVCRAAGGP 2999
Score = 31.6 bits (70), Expect = 0.82
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 320 LQLRHVKPADSGNYFCMAVGN 382
L+L HV PADSG Y C +G+
Sbjct: 2780 LRLHHVSPADSGEYVCRVMGS 2800
Score = 31.2 bits (69), Expect = 1.1
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = +2
Query: 227 FLALWIPNGNPVYGKETEKQLTVLQDSSRYLLQLRHVKPADSGNYFCMAVGNPELTFGKG 406
FL W N + ++ ++TV + R L +R VK +D G Y C A+ + FG
Sbjct: 437 FLINWRLNWGHI---PSQPRVTVTSEGGRGTLIIRDVKESDQGAYTCEAMNARGMVFGIP 493
Query: 407 TRLSVVDVFPTTAQP 451
V+++ P A P
Sbjct: 494 D--GVLELVPQRAGP 506
Score = 30.0 bits (66), Expect = 2.4
Identities = 13/21 (61%), Positives = 14/21 (65%)
Frame = +2
Query: 317 LLQLRHVKPADSGNYFCMAVG 379
LL+L V PADSG Y C VG
Sbjct: 2204 LLRLHQVTPADSGEYVCHVVG 2224
Score = 29.6 bits (65), Expect = 3.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 317 LLQLRHVKPADSGNYFCMAVGN 382
LL+L V PADSG Y C G+
Sbjct: 2879 LLRLNQVSPADSGEYSCQVTGS 2900
Score = 28.5 bits (62), Expect = 6.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 320 LQLRHVKPADSGNYFCMAVGN 382
L+L V PADSG Y C VG+
Sbjct: 2490 LRLLQVTPADSGEYVCRVVGS 2510
Score = 28.1 bits (61), Expect = 9.1
Identities = 13/32 (40%), Positives = 17/32 (52%)
Frame = +2
Query: 287 LTVLQDSSRYLLQLRHVKPADSGNYFCMAVGN 382
L V + LL+L PADSG Y C +G+
Sbjct: 2383 LPVRHQTHGSLLRLYQASPADSGEYVCRVLGS 2414
>gi|31083306|ref|NP_114141.1| (NM_031935) hemicentin; fibulin 6 [Homo
sapiens]
Length = 5636
Score = 34.3 bits (77), Expect = 0.13
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +2
Query: 239 WIPNGNPVYGKETEKQLTVLQDSSRYLLQLRHVKPADSGNYFCMAVGNPELT 394
W+ NG + G+E +++L+D + LL + V P D+G Y C+AV T
Sbjct: 1300 WLHNGRELTGREPG--ISILEDGT--LLVIASVTPYDNGEYICVAVNEAGTT 1347
Score = 34.3 bits (77), Expect = 0.13
Identities = 29/130 (22%), Positives = 56/130 (42%)
Frame = +2
Query: 5 VPGRAKMQPRLWLLIAAQLSTLHGGSALLQTPSSVMAQTNQMVKLSCEARTFPTNTRIYW 184
V G AK + L + I ++ + GS P+ ++ + + L CE + P T
Sbjct: 2275 VAGTAKKEYNLQVYIRPTIT--NSGSH----PTEIIVTRGKSISLECEVQGIPPPT---- 2324
Query: 185 LRLRQAPSANSHYEFLALWIPNGNPVYGKETEKQLTVLQDSSRYLLQLRHVKPADSGNYF 364
W+ +G+P+ K + +L + ++LQL+++ +D+G Y
Sbjct: 2325 ----------------VTWMKDGHPLI---KAKGVEILDEG--HILQLKNIHVSDTGRYV 2363
Query: 365 CMAVGNPELT 394
C+AV +T
Sbjct: 2364 CVAVNVAGMT 2373
Score = 32.7 bits (73), Expect = 0.37
Identities = 34/150 (22%), Positives = 56/150 (36%), Gaps = 10/150 (6%)
Frame = +2
Query: 92 QTPSSVMAQTNQMVKLSCEARTFPTNTRIYWLRLRQAPSANSHYEFLALWIPNGNPVYGK 271
+ PS V + V+L C A PT L W+ +G P+
Sbjct: 3252 EIPSDVSVLLGENVELVCNANGIPTP--------------------LIQWLKDGKPIASG 3291
Query: 272 ETEKQLTVLQDSSRYLLQLRHVKPADSGNYFCMAVGNPELTFGKGTRLSVVDVFPTTAQP 451
ETE+ + ++ L + +D+G Y C+A NP G+ R+ ++V+ T
Sbjct: 3292 ETER---IRVSANGSTLNIYGALTSDTGKYTCVAT-NPA---GEEDRIFNLNVYVTPTIR 3344
Query: 452 TKKTRPKKKI----------CRLPNLVPPK 511
K +K + CR PP+
Sbjct: 3345 GNKDEAEKLMTLVDTSINIECRATGTPPPQ 3374
Score = 32.3 bits (72), Expect = 0.48
Identities = 27/103 (26%), Positives = 42/103 (40%)
Frame = +2
Query: 68 LHGGSALLQTPSSVMAQTNQMVKLSCEARTFPTNTRIYWLRLRQAPSANSHYEFLALWIP 247
+H ++ + + V N V+L CEAR P APS W+
Sbjct: 2008 VHVAPSISGSNNMVAVVVNNPVRLECEARGIP------------APSLT--------WLK 2047
Query: 248 NGNPVYGKETEKQLTVLQDSSRYLLQLRHVKPADSGNYFCMAV 376
+G+PV Q+ S +L L + +D+G Y C+AV
Sbjct: 2048 DGSPVSSFSNGLQVL----SGGRILALTSAQISDTGRYTCVAV 2086
Score = 30.0 bits (66), Expect = 2.4
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 3/104 (2%)
Frame = +2
Query: 95 TPSSVMAQTNQMVKLSCEARTFPTNTRIYWLRLRQAPSANSHYEFLALWIPNGNPVYGKE 274
+P V + N + L CEA P+ + + W + Q ++ H A NG
Sbjct: 2681 SPKEVKIKVNNTLTLECEAYAIPSAS-LSWYKDGQPLKSDDHVNIAA----NG------- 2728
Query: 275 TEKQLTVLQDSSRYLLQLRHVKPADSGNYFCMA---VGNPELTF 397
+ LQ++ + +D+G Y C+A G EL F
Sbjct: 2729 -------------HTLQIKEAQISDTGRYTCVASNIAGEDELDF 2759
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 10,046,356
Number of sequences in database: 19,244
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22253418
Number of Sequences: 19244
Number of extensions: 636440
Number of successful extensions: 2773
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 2115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2747
length of query: 305
length of database: 10,046,356
effective HSP length: 47
effective length of query: 258
effective length of database: 9,141,888
effective search space: 2358607104
effective search space used: 2358607104
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search to RefSeq (Mouse) database
Query= 20030531C-003564 (20030531C-003564) 20030531C-003564
(917 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
15,330 sequences; 7,155,815 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|6753358|ref|NP_033988.1| (NM_009858) CD8 antigen, beta chain... 163 1e-40
Alignment gi|9790003|ref|NP_062607.1| (NM_019633) recombinant antineurami... 35 0.068
Alignment gi|31559837|ref|NP_848911.2| (NM_178796) RIKEN cDNA A530064D06 ... 34 0.12
Alignment gi|31559881|ref|NP_766158.2| (NM_172570) RIKEN cDNA 2210023F24 ... 33 0.15
Alignment gi|18426807|ref|NP_291086.1| (NM_033608) immunoglobulin superfa... 33 0.15
Alignment gi|27734196|ref|NP_775561.1| (NM_173385) cartilage intermediate... 33 0.15
Alignment gi|27777681|ref|NP_766094.1| (NM_172506) brother of CDO; Biregi... 33 0.20
Alignment gi|6680311|ref|NP_032331.1| (NM_008305) perlecan (heparan sulfa... 33 0.26
Alignment gi|29244014|ref|NP_808294.1| (NM_177626) hypothetical protein B... 32 0.44
Alignment gi|21313683|ref|NP_082236.1| (NM_027960) RIKEN cDNA 1700018F16 ... 32 0.44
>gi|6753358|ref|NP_033988.1| (NM_009858) CD8 antigen, beta chain
[Mus musculus]
Length = 213
Score = 163 bits (412), Expect = 1e-40
Identities = 91/215 (42%), Positives = 123/215 (56%), Gaps = 6/215 (2%)
Frame = +2
Query: 23 MQPRLWLLIAAQLSTLHGGSALLQTPSSVMAQTNQMVKLSCEARTFPTNTRIYWLRLRQA 202
MQP LWL+ + +L+ L SAL+QTPSS++ QTN K+SCE ++ T IYWLR RQ
Sbjct: 1 MQPWLWLVFSMKLAALWSSSALIQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQD 60
Query: 203 PSANSHYEFLALWIPNGNPVYGKETEKQLTVL---QDSSRYLLQLRHVKPADSGNYFCMA 373
P + ++EFLA W + +YG+ +K+ ++ DS R L + +VKP DS YFC
Sbjct: 61 PK-DKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNVKPEDSDFYFCAT 119
Query: 374 VGNPELTFGKGTRLSVVDVFPTTAQPTKKT---RPKKKICRLPNLVPPKGPACAPXXXXX 544
VG+P++ FG GT+L+VVDV PTTA PTKKT KKK C P+ KG C+
Sbjct: 120 VGSPKMVFGTGTKLTVVDVLPTTA-PTKKTTLKMKKKKQCPFPHPETQKGLTCSLTTLSL 178
Query: 545 XXXXXXXXXXXXXXXXHVYCLQRRAWHRLMKQFCK 649
+ YC++RRA MKQF K
Sbjct: 179 LVVCILLLLAFLGVAVYFYCVRRRARIHFMKQFHK 213
>gi|9790003|ref|NP_062607.1| (NM_019633) recombinant
antineuraminidase single chain Ig VH and VL domains [Mus
musculus]
Length = 273
Score = 34.7 bits (78), Expect = 0.068
Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Frame = +2
Query: 74 GGS--ALLQTPSSVMAQTNQMVKLSCEARTFPTNTRIYWLRLRQAPSANSHYEFLALWIP 247
GGS L QT SS+ A V +SC A +N Y +Q P + L +
Sbjct: 156 GGSDIELTQTTSSLSASLGDRVTISCRASQDISN---YLNWYQQNPDGT--VKLLIYYTS 210
Query: 248 NGNPVYGKETEKQLTVLQDSSRYLLQLRHVKPADSGNYFCMAVGNPELTFGKGTRLSVVD 427
N + E + + + Y L + +++ D YFC TFG GT+L + D
Sbjct: 211 NLH----SEVPSRFSGSGSGTDYSLTISNLEQEDIATYFCQQDFTLPFTFGGGTKLEIRD 266
>gi|31559837|ref|NP_848911.2| (NM_178796) RIKEN cDNA A530064D06 gene
[Mus musculus]
Length = 229
Score = 33.9 bits (76), Expect = 0.12
Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 3/159 (1%)
Frame = +2
Query: 44 LIAAQLSTLHGGSALLQTPSSVMAQTNQMVKLSCEARTFPTNTRIYWLRLRQAPSANSHY 223
L++ L L + Q P + Q + V ++C + ++ W + N Y
Sbjct: 8 LLSPVLLLLLASGSWTQNPELLRTQEGETVSVTCWYDSLYHSSEKIWCKQID----NLCY 63
Query: 224 EFLALWIPNGNPVYGKETEKQLTVLQDSSRY---LLQLRHVKPADSGNYFCMAVGNPELT 394
F++ K EK ++Q SSR+ + + +K +DSG Y C V N
Sbjct: 64 PFVS-----------KSAEKPRFLIQQSSRFNFFTVTMTKLKMSDSGIYHCGIVANNTSV 112
Query: 395 FGKGTRLSVVDVFPTTAQPTKKTRPKKKICRLPNLVPPK 511
+ + L V ++ T P ++ +LP L+ K
Sbjct: 113 YLRNIHLVVSK--GSSVVSTPDIIPATRLTKLPTLITTK 149
>gi|31559881|ref|NP_766158.2| (NM_172570) RIKEN cDNA 2210023F24 [Mus
musculus]
Length = 554
Score = 33.5 bits (75), Expect = 0.15
Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Frame = +1
Query: 466 TQEENMPITKPGAPKGPCLCPPHHWPAGGRP-SGSAGVLGCCCPCILPAEESLAS----- 627
T E + P P AP+ C P WPAG P A G P L LAS
Sbjct: 13 TPEPSAPSAPPPAPEPSAPCAPEQWPAGEEPVRCDACPEGAALPAALSCLSCLASFCSAH 72
Query: 628 --PHE 636
PHE
Sbjct: 73 LAPHE 77
>gi|18426807|ref|NP_291086.1| (NM_033608) immunoglobulin
superfamily, member 9; NCAM-like protein NRT1; neural
cell adhesion molecule (Ncam)-like [Mus musculus]
Length = 1179
Score = 33.5 bits (75), Expect = 0.15
Identities = 26/107 (24%), Positives = 44/107 (40%)
Frame = +2
Query: 50 AAQLSTLHGGSALLQTPSSVMAQTNQMVKLSCEARTFPTNTRIYWLRLRQAPSANSHYEF 229
A QL L G ++ PS+ ++Q V L+C A +P N W +
Sbjct: 218 ATQLLVL-GPPVIVVPPSNSTVNSSQDVSLACRAEAYPANLTYSWFQ------------- 263
Query: 230 LALWIPNGNPVYGKETEKQLTVLQDSSRYLLQLRHVKPADSGNYFCM 370
N + + ++ +L D S L L+ +P D+G+Y C+
Sbjct: 264 -----DGVNVFHISRLQSRVRILVDGS---LWLQATQPDDAGHYTCV 302
>gi|27734196|ref|NP_775561.1| (NM_173385) cartilage intermediate
layer protein, nucleotide pyrophosphohydrolase [Mus
musculus]
Length = 1250
Score = 33.5 bits (75), Expect = 0.15
Identities = 32/137 (23%), Positives = 54/137 (39%)
Frame = +2
Query: 86 LLQTPSSVMAQTNQMVKLSCEARTFPTNTRIYWLRLRQAPSANSHYEFLALWIPNGNPVY 265
++ P + Q V L C+A P+ + +W Y L P+ +Y
Sbjct: 311 IVMNPEMKARRAGQSVSLCCKATGKPSPDKYFW------------YHNNTLLDPS---LY 355
Query: 266 GKETEKQLTVLQDSSRYLLQLRHVKPADSGNYFCMAVGNPELTFGKGTRLSVVDVFPTTA 445
E++ L LR+++ +G YFC A + K T+L+V+ T
Sbjct: 356 KHESK-------------LVLRNLQQDQAGEYFCKAQSDAGAVKSKVTQLTVIAHDETPC 402
Query: 446 QPTKKTRPKKKICRLPN 496
PT P+ + RLP+
Sbjct: 403 NPT----PESYLIRLPH 415
>gi|27777681|ref|NP_766094.1| (NM_172506) brother of CDO; Biregional
Cdon binding protein [Mus musculus]
Length = 1110
Score = 33.1 bits (74), Expect = 0.20
Identities = 40/157 (25%), Positives = 55/157 (34%), Gaps = 14/157 (8%)
Frame = +2
Query: 101 SSVMAQTNQMVKLSCEARTFPTNTRIYWLRLRQAPSANSHYEFLALWIPNGNPVYGKETE 280
S ++ Q KL+CE R P PS LW+ N P+ T
Sbjct: 325 SQLVIPWGQSAKLTCEVRGNPP------------PSV--------LWLRNAVPL----TS 360
Query: 281 KQLTVLQDSSRYLLQLRHVKPADSGNYFCMA--------------VGNPELTFGKGTRLS 418
Q L SR L++ V P D G Y CMA P+ T G
Sbjct: 361 SQRLRL---SRRALRVVSVGPEDEGVYQCMAENAVGSAHAVVQLRTARPDTTLRPGRDTK 417
Query: 419 VVDVFPTTAQPTKKTRPKKKICRLPNLVPPKGPACAP 529
+ P P++ +RP + + P LV P + P
Sbjct: 418 PIAATP-PMPPSRPSRPDQMLREQPGLVKPPTSSVQP 453
>gi|6680311|ref|NP_032331.1| (NM_008305) perlecan (heparan sulfate
proteoglycan 2) [Mus musculus]
Length = 3707
Score = 32.7 bits (73), Expect = 0.26
Identities = 26/102 (25%), Positives = 38/102 (36%), Gaps = 3/102 (2%)
Frame = +2
Query: 104 SVMAQTNQMVKLSCEARTFPT---NTRIYWLRLRQAPSANSHYEFLALWIPNGNPVYGKE 274
S+ A Q V +C A PT N R+ W + P
Sbjct: 415 SIQASRGQTVTFTCVATGVPTPIINWRLNWGHIPAHP----------------------- 451
Query: 275 TEKQLTVLQDSSRYLLQLRHVKPADSGNYFCMAVGNPELTFG 400
++T+ + R L +R VK AD G Y C A+ + + FG
Sbjct: 452 ---RVTMTSEGGRGTLIIRDVKEADQGAYTCEAMNSRGMVFG 490
Score = 31.2 bits (69), Expect = 0.75
Identities = 16/51 (31%), Positives = 25/51 (48%)
Frame = +2
Query: 317 LLQLRHVKPADSGNYFCMAVGNPELTFGKGTRLSVVDVFPTTAQPTKKTRP 469
+L +R+V+P+D+G Y C G+ +GT V V T+ P P
Sbjct: 1823 ILTIRNVQPSDAGTYVC--TGSNMFAMDQGTATLHVQVSGTSTAPVASIHP 1871
Score = 29.6 bits (65), Expect = 2.2
Identities = 11/23 (47%), Positives = 15/23 (64%)
Frame = +2
Query: 314 YLLQLRHVKPADSGNYFCMAVGN 382
++L+L V PADSG Y C G+
Sbjct: 2198 HMLRLNRVSPADSGEYSCQVTGS 2220
Score = 28.5 bits (62), Expect = 4.9
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 320 LQLRHVKPADSGNYFCMAVGNPELTFGKGTRLSVVDVFPTTAQPTKKTRP 469
L+L H+ ADSG Y C A N + + T + ++ V P+T P P
Sbjct: 2006 LRLHHMSVADSGEYVCRANNNID---AQETSI-MISVSPSTNSPPAPASP 2051
Score = 28.1 bits (61), Expect = 6.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 317 LLQLRHVKPADSGNYFCMAVGN 382
LL+L + PADSG Y C G+
Sbjct: 2297 LLRLYQLSPADSGEYVCQVAGS 2318
>gi|29244014|ref|NP_808294.1| (NM_177626) hypothetical protein
B230359F08 [Mus musculus]
Length = 146
Score = 32.0 bits (71), Expect = 0.44
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Frame = +2
Query: 77 GSALLQTPSSVMAQTNQMVKLSCEARTFPTNTRIYWLRLRQAPSANSHYEFLAL-WIPNG 253
G + Q+P+S++ Q + +L C + + TN ++ W R + L +IP
Sbjct: 21 GQQVQQSPASLVLQEGENAELQC-SFSISTN-QVQWFYQRPGG------RLIGLSYIPGM 72
Query: 254 NPVYGKETEKQLTVLQDSSRYLLQLRHVKPADSGNYFCM 370
P GK+T +T + SS L + + DSG YFC+
Sbjct: 73 KPT-GKQTSSTVTKGRHSS---LTISSSQTTDSGTYFCV 107
>gi|21313683|ref|NP_082236.1| (NM_027960) RIKEN cDNA 1700018F16 [Mus
musculus]
Length = 493
Score = 32.0 bits (71), Expect = 0.44
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 427 CLSHHCPAHQEDQTQEENMPITK-PGAPKGPCLCPPHHWPA-GGRPSGSAGVLGCCC 591
C SH P QEDQ Q+ ++ +TK P + PPH P + A +L CC
Sbjct: 431 CHSHLLPQPQEDQHQDTHLKVTKLPNILQRASKAPPHPLPGLMATLTSLALILWLCC 487
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 7,155,815
Number of sequences in database: 15,330
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15650168
Number of Sequences: 15330
Number of extensions: 435593
Number of successful extensions: 1734
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 1459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1724
length of query: 305
length of database: 7,155,815
effective HSP length: 47
effective length of query: 258
effective length of database: 6,435,305
effective search space: 1660308690
effective search space used: 1660308690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)