Search to RefSeq (Human) database
Query= 20030531C-003703 (20030531C-003703) 20030531C-003703
(1080 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,244 sequences; 10,046,356 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4503175|ref|NP_003458.1| (NM_003467) chemokine (C-X-C motif)... 631 0.0
Alignment gi|5031627|ref|NP_005499.1| (NM_005508) chemokine (C-C motif) r... 233 1e-61
Alignment gi|4504099|ref|NP_001495.1| (NM_001504) chemokine (C-X-C motif)... 224 1e-58
Alignment gi|4502641|ref|NP_001829.1| (NM_001838) chemokine (C-C motif) r... 215 4e-56
Alignment gi|4504681|ref|NP_000625.1| (NM_000634) interleukin 8 receptor ... 215 5e-56
Alignment gi|14043042|ref|NP_112477.1| (NM_031200) chemokine (C-C motif) ... 213 2e-55
Alignment gi|14043044|ref|NP_006632.2| (NM_006641) chemokine (C-C motif) ... 213 2e-55
Alignment gi|4504683|ref|NP_001548.1| (NM_001557) interleukin 8 receptor ... 212 4e-55
Alignment gi|14589869|ref|NP_116743.1| (NM_032966) Burkitt lymphoma recep... 207 1e-53
Alignment gi|4502415|ref|NP_001707.1| (NM_001716) Burkitt lymphoma recept... 207 1e-53
>gi|4503175|ref|NP_003458.1| (NM_003467) chemokine (C-X-C motif)
receptor 4; Neuropeptide Y receptor Y3; chemokine (C-X-C
motif), receptor 4 (fusin) [Homo sapiens]
Length = 352
Score = 631 bits (1627), Expect = 0.0
Identities = 310/330 (93%), Positives = 323/330 (96%)
Frame = +3
Query: 90 MDGFRIFTSDNYTEDDLGSGDYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLV 269
M+G I+TSDNYTE+ +GSGDYDS+KEPCFREENA+FN+IFLPT+YSIIFLTGIVGNGLV
Sbjct: 1 MEGISIYTSDNYTEE-MGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLV 59
Query: 270 ILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVN 449
ILVMGYQKKLRSMTDKYRLHLSVADLLFV+TLPFWAVDAVANWYFG FLCKAVHVIYTVN
Sbjct: 60 ILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVANWYFGNFLCKAVHVIYTVN 119
Query: 450 LYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVRE 629
LYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANV E
Sbjct: 120 LYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSE 179
Query: 630 GDGRYICDRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALK 809
D RYICDRFYPNDLW+VVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKG+QKRKALK
Sbjct: 180 ADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGHQKRKALK 239
Query: 810 TTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNP 989
TTVILILAFFACWLPYYIGISIDSFILLEII+QGCEFE+TVHKWISITEALAFFHCCLNP
Sbjct: 240 TTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNP 299
Query: 990 ILYAFLGAKFKTSAQHALTSVSRGSSLKIL 1079
ILYAFLGAKFKTSAQHALTSVSRGSSLKIL
Sbjct: 300 ILYAFLGAKFKTSAQHALTSVSRGSSLKIL 329
>gi|5031627|ref|NP_005499.1| (NM_005508) chemokine (C-C motif)
receptor 4; chemokine (C-C) receptor 4 [Homo sapiens]
Length = 360
Score = 233 bits (595), Expect = 1e-61
Identities = 117/292 (40%), Positives = 174/292 (59%), Gaps = 2/292 (0%)
Frame = +3
Query: 153 YDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHL 332
Y+SI +PC +E F +FLP +YS++F+ G++GN +V+LV+ K+LRSMTD Y L+L
Sbjct: 22 YESIPKPCTKEGIKAFGELFLPPLYSLVFVFGLLGNSVVVLVLFKYKRLRSMTDVYLLNL 81
Query: 333 SVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVH 512
+++DLLFV +LPFW A W FG LCK + +Y V YS + + +S+DRYLAIVH
Sbjct: 82 AISDLLFVFSLPFWGYYAADQWVFGLGLCKMISWMYLVGFYSGIFFVMLMSIDRYLAIVH 141
Query: 513 ATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDGRYICDRFYP--NDLWLVV 686
A S R R L + + W A+ ++P F+F+ C Y + W V+
Sbjct: 142 AVFSLRARTLTYGVITSLATWSVAVFASLPGFLFSTCYTERNHTYCKTKYSLNSTTWKVL 201
Query: 687 FQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILAFFACWLPYYIG 866
+ ++GL++P ++L CY +II L H K +K KA+K +++ F W PY I
Sbjct: 202 SSLEINILGLVIPLGIMLFCYSMIIRTLQHCKNEKKNKAVKMIFAVVVLFLGFWTPYNIV 261
Query: 867 ISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFK 1022
+ +++ + LE++Q C FE + I TE LAF HCCLNPI+Y FLG KF+
Sbjct: 262 LFLETLVELEVLQD-CTFERYLDYAIQATETLAFVHCCLNPIIYFFLGEKFR 312
>gi|4504099|ref|NP_001495.1| (NM_001504) chemokine (C-X-C motif)
receptor 3; chemokine (C-X-C) receptor 3; IP10 receptor;
Mig receptor; G protein-coupled receptor 9 [Homo sapiens]
Length = 368
Score = 224 bits (570), Expect = 1e-58
Identities = 115/300 (38%), Positives = 173/300 (57%), Gaps = 4/300 (1%)
Frame = +3
Query: 135 DLGSGDYDSI--KEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSM 308
D G + DS PC ++ + +F+R FLP +YS++FL G++GNG V V+ ++ S
Sbjct: 28 DYGENESDSCCTSPPCPQDFSLNFDRAFLPALYSLLFLLGLLGNGAVAAVLLSRRTALSS 87
Query: 309 TDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISL 488
TD + LHL+VAD L VLTLP WAVDA W FG LCK ++ +N Y+ L+LA IS
Sbjct: 88 TDTFLLHLAVADTLLVLTLPLWAVDAAVQWVFGSGLCKVAGALFNINFYAGALLLACISF 147
Query: 489 DRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGD--GRYICDRFY 662
DRYL IVHAT R + + VW LL +PDFIF + + C +
Sbjct: 148 DRYLNIVHATQLYRRGPPARVTLTCLAVWGLCLLFALPDFIFLSAHHDERLNATHCQYNF 207
Query: 663 PNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILAFFA 842
P + + ++ G +LP +V+ CY I++ L S+G ++ +A++ V++++AF
Sbjct: 208 P-QVGRTALRVLQLVAGFLLPLLVMAYCYAHILAVLLVSRGQRRLRAMRLVVVVVVAFAL 266
Query: 843 CWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFK 1022
CW PY++ + +D + L + + C ES V S+T L + HCCLNP+LYAF+G KF+
Sbjct: 267 CWTPYHLVVLVDILMDLGALARNCGRESRVDVAKSVTSGLGYMHCCLNPLLYAFVGVKFR 326
>gi|4502641|ref|NP_001829.1| (NM_001838) chemokine (C-C motif)
receptor 7 precursor; Epstein-Barr virus induced gene 1;
lymphocyte-specific G protein-coupled peptide receptor;
chemokine (C-C) receptor 7; C-C chemokine receptor type
7; Epstein-Barr virus induced G-protein coupled receptor;
MIP-3 beta receptor; EBV-induced G protein-coupled
receptor 1 [Homo sapiens]
Length = 378
Score = 215 bits (548), Expect = 4e-56
Identities = 109/309 (35%), Positives = 178/309 (57%), Gaps = 7/309 (2%)
Frame = +3
Query: 117 DNYTEDDLGSG---DYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGY 287
D T+D +G DY + C +++ +F FLP +YSII G++GNGLV+L Y
Sbjct: 26 DEVTDDYIGDNTTVDYTLFESLCSKKDVRNFKAWFLPIMYSIICFVGLLGNGLVVLTYIY 85
Query: 288 QKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVL 467
K+L++MTD Y L+L+VAD+LF+LTLPFWA A +W FG CK + IY ++ +S +L
Sbjct: 86 FKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHFCKLIFAIYKMSFFSGML 145
Query: 468 ILAFISLDRYLAIVHATNS--QRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDGR 641
+L IS+DRY+AIV A ++ R R LL K+ VG+WI A +L+IP+ ++++++
Sbjct: 146 LLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWILATVLSIPELLYSDLQRSSSE 205
Query: 642 YI--CDRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTT 815
C + + Q +++G ++P + + CY +II L ++ +++ KA+K
Sbjct: 206 QAMRCSLITEHVEAFITIQVAQMVIGFLVPLLAMSFCYLVIIRTLLQARNFERNKAIKVI 265
Query: 816 VILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPIL 995
+ +++ F LPY + + I CE ++ +T +LA CC+NP L
Sbjct: 266 IAVVVVFIVFQLPYNGVVLAQTVANFNITSSTCELSKQLNIAYDVTYSLACVRCCVNPFL 325
Query: 996 YAFLGAKFK 1022
YAF+G KF+
Sbjct: 326 YAFIGVKFR 334
>gi|4504681|ref|NP_000625.1| (NM_000634) interleukin 8 receptor alpha;
chemokine (C-X-C) receptor 1; high affinity interleukin-8
receptor A; IL-8 receptor type 1; interleukin-8 receptor
type 1; interleukin-8 receptor type A; IL-8 receptor
[Homo sapiens]
Length = 350
Score = 215 bits (547), Expect = 5e-56
Identities = 122/317 (38%), Positives = 176/317 (55%), Gaps = 11/317 (3%)
Frame = +3
Query: 132 DDL---GSGDYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLR 302
DDL G D PC E N+ + Y+++FL ++GN LV+LV+ Y + R
Sbjct: 13 DDLNFTGMPPADEDYSPCMLETET-LNKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGR 71
Query: 303 SMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFI 482
S+TD Y L+L++ADLLF LTLP WA V W FG FLCK V ++ VN YS +L+LA I
Sbjct: 72 SVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLCKVVSLLKEVNFYSGILLLACI 131
Query: 483 SLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANV-REGDGRYICDRF 659
S+DRYLAIVHAT + ++ L K V +G W ++ L++P F+F + +C
Sbjct: 132 SVDRYLAIVHATRTLTQKRHLV-KFVCLGCWGLSMNLSLPFFLFRQAYHPNNSSPVCYEV 190
Query: 660 YPNDL--WLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILA 833
ND W +V + G I+P V+L CY + L + QK +A++ ++L
Sbjct: 191 LGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKAHMGQKHRAMRVIFAVVLI 250
Query: 834 FFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGA 1013
F CWLPY + + D+ + ++IQ+ CE + + + + TE L F H CLNPI+YAF+G
Sbjct: 251 FLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQ 310
Query: 1014 KF-----KTSAQHALTS 1049
F K A H L S
Sbjct: 311 NFRHGFLKILAMHGLVS 327
>gi|14043042|ref|NP_112477.1| (NM_031200) chemokine (C-C motif)
receptor 9 isoform A [Homo sapiens]
Length = 369
Score = 213 bits (542), Expect = 2e-55
Identities = 112/312 (35%), Positives = 177/312 (55%), Gaps = 15/312 (4%)
Frame = +3
Query: 132 DDLGSGDYDSIKEP---------CFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMG 284
DD GS S+++ C + F FLP +Y ++F+ G +GN LVILV
Sbjct: 15 DDYGSESTSSMEDYVNFNFTDFYCEKNNVRQFASHFLPPLYWLVFIVGALGNSLVILVYW 74
Query: 285 YQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSV 464
Y ++++MTD + L+L++ADLLF++TLPFWA+ A W F F+CK V+ +Y +N YS V
Sbjct: 75 YCTRVKTMTDMFLLNLAIADLLFLVTLPFWAIAAADQWKFQTFMCKVVNSMYKMNFYSCV 134
Query: 465 LILAFISLDRYLAIVHA--TNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDG 638
L++ IS+DRY+AI A ++ R ++LL K+V +W+ A L IP+ +++ ++E G
Sbjct: 135 LLIMCISVDRYIAIAQAMRAHTWREKRLLYSKMVCFTIWVLAAALCIPEILYSQIKEESG 194
Query: 639 RYICDRFYPND----LWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKAL 806
IC YP+D L V + +++G LP +V+ CY III L +K K KAL
Sbjct: 195 IAICTMVYPSDESTKLKSAVLTLK-VILGFFLPFVVMACCYTIIIHTLIQAKKSSKHKAL 253
Query: 807 KTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLN 986
K T+ ++ F PY + + + + C + + +T+ +AFFH CLN
Sbjct: 254 KVTITVLTVFVLSQFPYNCILLVQTIDAYAMFISNCAVSTNIDICFQVTQTIAFFHSCLN 313
Query: 987 PILYAFLGAKFK 1022
P+LY F+G +F+
Sbjct: 314 PVLYVFVGERFR 325
>gi|14043044|ref|NP_006632.2| (NM_006641) chemokine (C-C motif)
receptor 9 isoform B [Homo sapiens]
Length = 357
Score = 213 bits (542), Expect = 2e-55
Identities = 112/312 (35%), Positives = 177/312 (55%), Gaps = 15/312 (4%)
Frame = +3
Query: 132 DDLGSGDYDSIKEP---------CFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMG 284
DD GS S+++ C + F FLP +Y ++F+ G +GN LVILV
Sbjct: 3 DDYGSESTSSMEDYVNFNFTDFYCEKNNVRQFASHFLPPLYWLVFIVGALGNSLVILVYW 62
Query: 285 YQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSV 464
Y ++++MTD + L+L++ADLLF++TLPFWA+ A W F F+CK V+ +Y +N YS V
Sbjct: 63 YCTRVKTMTDMFLLNLAIADLLFLVTLPFWAIAAADQWKFQTFMCKVVNSMYKMNFYSCV 122
Query: 465 LILAFISLDRYLAIVHA--TNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDG 638
L++ IS+DRY+AI A ++ R ++LL K+V +W+ A L IP+ +++ ++E G
Sbjct: 123 LLIMCISVDRYIAIAQAMRAHTWREKRLLYSKMVCFTIWVLAAALCIPEILYSQIKEESG 182
Query: 639 RYICDRFYPND----LWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKAL 806
IC YP+D L V + +++G LP +V+ CY III L +K K KAL
Sbjct: 183 IAICTMVYPSDESTKLKSAVLTLK-VILGFFLPFVVMACCYTIIIHTLIQAKKSSKHKAL 241
Query: 807 KTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLN 986
K T+ ++ F PY + + + + C + + +T+ +AFFH CLN
Sbjct: 242 KVTITVLTVFVLSQFPYNCILLVQTIDAYAMFISNCAVSTNIDICFQVTQTIAFFHSCLN 301
Query: 987 PILYAFLGAKFK 1022
P+LY F+G +F+
Sbjct: 302 PVLYVFVGERFR 313
>gi|4504683|ref|NP_001548.1| (NM_001557) interleukin 8 receptor beta;
chemokine (CXC) receptor 2; high affinity interleukin-8
receptor B; GRO/MGSA receptor; interleukin 8 receptor B;
interleukin 8 receptor; CXCR2 gene for IL8 receptor type
B; interleukin 8 receptor type 2 [Homo sapiens]
Length = 360
Score = 212 bits (539), Expect = 4e-55
Identities = 113/311 (36%), Positives = 178/311 (56%), Gaps = 9/311 (2%)
Frame = +3
Query: 117 DNYTEDDLGSGDYDSIKEPCFRE------ENAHFNRIFLPTVYSIIFLTGIVGNGLVILV 278
D + +DL + Y S P + E+ N+ F+ +Y+++FL ++GN LV+LV
Sbjct: 13 DFWKGEDLSNYSYSSTLPPFLLDAAPCEPESLEINKYFVVIIYALVFLLSLLGNSLVMLV 72
Query: 279 MGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYS 458
+ Y + RS+TD Y L+L++ADLLF LTLP WA V W FG FLCK V ++ VN YS
Sbjct: 73 ILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLCKVVSLLKEVNFYS 132
Query: 459 SVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIF-ANVREGD 635
+L+LA IS+DRYLAIVHAT + ++ L K + + +W +LLL +P +F V +
Sbjct: 133 GILLLACISVDRYLAIVHATRTLTQKRYLV-KFICLSIWGLSLLLALPVLLFRRTVYSSN 191
Query: 636 GRYICDRFYPNDL--WLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALK 809
C N+ W ++ + G I+P +++L CY + L + QK +A++
Sbjct: 192 VSPACYEDMGNNTANWRMLLRILPQSFGFIVPLLIMLFCYGFTLRTLFKAHMGQKHRAMR 251
Query: 810 TTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNP 989
++L F CWLPY + + D+ + ++IQ+ CE + + + + TE L H CLNP
Sbjct: 252 VIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQETCERRNHIDRALDATEILGILHSCLNP 311
Query: 990 ILYAFLGAKFK 1022
++YAF+G KF+
Sbjct: 312 LIYAFIGQKFR 322
>gi|14589869|ref|NP_116743.1| (NM_032966) Burkitt lymphoma receptor 1
isoform 2; Burkitt lymphoma receptor 1, GTP-binding
protein; C-X-C chemokine receptor type 5;
monocyte-derived receptor 15; Burkitt lymphoma receptor
1, GTP binding protein [Homo sapiens]
Length = 327
Score = 207 bits (526), Expect = 1e-53
Identities = 104/295 (35%), Positives = 169/295 (57%), Gaps = 8/295 (2%)
Frame = +3
Query: 192 AHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPF 371
A F +F+P YS+IFL G++GN LV++++ ++ RS T+ + HL+VADLL V LPF
Sbjct: 2 ASFKAVFVPVAYSLIFLLGVIGNVLVLVILERHRQTRSSTETFLFHLAVADLLLVFILPF 61
Query: 372 WAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVHATNSQRPRKLLAE 551
+ W G FLCK V ++ VN Y S L+LA I++DRYLAIVHA ++ R R+LL+
Sbjct: 62 AVAEGSVGWVLGTFLCKTVIALHKVNFYCSSLLLACIAVDRYLAIVHAVHAYRHRRLLSI 121
Query: 552 KVVYVGVWIPALLLTIPDFIFANVREGDGR-------YICDRFYPNDLWLVVFQFQHIMV 710
+ +W+ LL +P+ +FA V +G + + W +F + +
Sbjct: 122 HITCGTIWLVGFLLALPEILFAKVSQGHHNNSLPRCTFSQENQAETHAWF-TSRFLYHVA 180
Query: 711 GLILPGIVILSCYCIIISKLSHS-KGYQKRKALKTTVILILAFFACWLPYYIGISIDSFI 887
G +LP +V+ CY ++ +L + + Q++KA++ +++ FF CW PY+I I +D+
Sbjct: 181 GFLLPMLVMGWCYVGVVHRLRQAQRRPQRQKAVRVAILVTSIFFLCWSPYHIVIFLDTLA 240
Query: 888 LLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSV 1052
L+ + C+ ++ I++ E L HCCLNP+LY F G KF++ LT +
Sbjct: 241 RLKAVDNTCKLNGSLPVAITMCEFLGLAHCCLNPMLYTFAGVKFRSDLSRLLTKL 295
>gi|4502415|ref|NP_001707.1| (NM_001716) Burkitt lymphoma receptor 1
isoform 1; Burkitt lymphoma receptor 1, GTP-binding
protein; C-X-C chemokine receptor type 5;
monocyte-derived receptor 15; Burkitt lymphoma receptor
1, GTP binding protein [Homo sapiens]
Length = 372
Score = 207 bits (526), Expect = 1e-53
Identities = 104/295 (35%), Positives = 169/295 (57%), Gaps = 8/295 (2%)
Frame = +3
Query: 192 AHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPF 371
A F +F+P YS+IFL G++GN LV++++ ++ RS T+ + HL+VADLL V LPF
Sbjct: 47 ASFKAVFVPVAYSLIFLLGVIGNVLVLVILERHRQTRSSTETFLFHLAVADLLLVFILPF 106
Query: 372 WAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVHATNSQRPRKLLAE 551
+ W G FLCK V ++ VN Y S L+LA I++DRYLAIVHA ++ R R+LL+
Sbjct: 107 AVAEGSVGWVLGTFLCKTVIALHKVNFYCSSLLLACIAVDRYLAIVHAVHAYRHRRLLSI 166
Query: 552 KVVYVGVWIPALLLTIPDFIFANVREGDGR-------YICDRFYPNDLWLVVFQFQHIMV 710
+ +W+ LL +P+ +FA V +G + + W +F + +
Sbjct: 167 HITCGTIWLVGFLLALPEILFAKVSQGHHNNSLPRCTFSQENQAETHAWF-TSRFLYHVA 225
Query: 711 GLILPGIVILSCYCIIISKLSHS-KGYQKRKALKTTVILILAFFACWLPYYIGISIDSFI 887
G +LP +V+ CY ++ +L + + Q++KA++ +++ FF CW PY+I I +D+
Sbjct: 226 GFLLPMLVMGWCYVGVVHRLRQAQRRPQRQKAVRVAILVTSIFFLCWSPYHIVIFLDTLA 285
Query: 888 LLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSV 1052
L+ + C+ ++ I++ E L HCCLNP+LY F G KF++ LT +
Sbjct: 286 RLKAVDNTCKLNGSLPVAITMCEFLGLAHCCLNPMLYTFAGVKFRSDLSRLLTKL 340
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 10,046,356
Number of sequences in database: 19,244
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24001322
Number of Sequences: 19244
Number of extensions: 646274
Number of successful extensions: 2846
Number of sequences better than 10.0: 319
Number of HSP's better than 10.0 without gapping: 1628
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 387
Number of HSP's gapped (non-prelim): 1975
length of query: 360
length of database: 10,046,356
effective HSP length: 47
effective length of query: 312
effective length of database: 9,141,888
effective search space: 2852269056
effective search space used: 2852269056
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search to RefSeq (Mouse) database
Query= 20030531C-003703 (20030531C-003703) 20030531C-003703
(1080 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
15,330 sequences; 7,155,815 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|6753460|ref|NP_034041.1| (NM_009911) chemokine (C-X-C motif)... 595 e-170
Alignment gi|6753458|ref|NP_034040.1| (NM_009910) chemokine (C-X-C motif)... 225 3e-59
Alignment gi|6671772|ref|NP_031745.1| (NM_007719) chemokine (C-C motif) r... 220 1e-57
Alignment gi|6857773|ref|NP_034046.1| (NM_009916) chemokine (C-C motif) r... 218 5e-57
Alignment gi|6753318|ref|NP_033965.1| (NM_009835) chemokine (C-C motif) r... 213 1e-55
Alignment gi|6753462|ref|NP_034043.1| (NM_009913) chemokine (C-C motif) r... 208 3e-54
Alignment gi|6753456|ref|NP_034039.1| (NM_009909) interleukin 8 receptor ... 202 2e-52
Alignment gi|31542483|ref|NP_067622.2| (NM_021609) D6 beta-chemokine rece... 202 3e-52
Alignment gi|6680790|ref|NP_031577.1| (NM_007551) Burkitt lymphoma recept... 202 3e-52
Alignment gi|6671774|ref|NP_031746.1| (NM_007720) chemokine (C-C motif) r... 200 9e-52
>gi|6753460|ref|NP_034041.1| (NM_009911) chemokine (C-X-C motif)
receptor 4; chemokine (C-X-C) receptor 4;
leukocyte-expressed seven-transmembrane-domain [Mus
musculus]
Length = 359
Score = 595 bits (1534), Expect = e-170
Identities = 292/330 (88%), Positives = 313/330 (94%), Gaps = 5/330 (1%)
Frame = +3
Query: 105 IFTSDNYTEDDLGSGDYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMG 284
I+TSDNY+E+ +GSGDYDS KEPCFR+EN HFNRIFLPT+Y IIFLTGIVGNGLVILVMG
Sbjct: 8 IYTSDNYSEE-VGSGDYDSNKEPCFRDENVHFNRIFLPTIYFIIFLTGIVGNGLVILVMG 66
Query: 285 YQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSV 464
YQKKLRSMTDKYRLHLSVADLLFV+TLPFWAVDA+A+WYFGKFLCKAVH+IYTVNLYSSV
Sbjct: 67 YQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAMADWYFGKFLCKAVHIIYTVNLYSSV 126
Query: 465 LILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANV-----RE 629
LILAFISLDRYLAIVHATNSQRPRKLLAEK VYVGVWIPALLLTIPDFIFA+V +
Sbjct: 127 LILAFISLDRYLAIVHATNSQRPRKLLAEKAVYVGVWIPALLLTIPDFIFADVSQGDISQ 186
Query: 630 GDGRYICDRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALK 809
GD RYICDR YP+ LW+VVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKG+QKRKALK
Sbjct: 187 GDDRYICDRLYPDSLWMVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGHQKRKALK 246
Query: 810 TTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNP 989
TTVILILAFFACWLPYY+GISIDSFILL +I+QGC+FES VHKWISITEALAFFHCCLNP
Sbjct: 247 TTVILILAFFACWLPYYVGISIDSFILLGVIKQGCDFESIVHKWISITEALAFFHCCLNP 306
Query: 990 ILYAFLGAKFKTSAQHALTSVSRGSSLKIL 1079
ILYAFLGAKFK+SAQHAL S+SRGSSLKIL
Sbjct: 307 ILYAFLGAKFKSSAQHALNSMSRGSSLKIL 336
>gi|6753458|ref|NP_034040.1| (NM_009910) chemokine (C-X-C motif)
receptor 3; chemokine (C-X-C) receptor 3 [Mus musculus]
Length = 367
Score = 225 bits (574), Expect = 3e-59
Identities = 119/321 (37%), Positives = 183/321 (56%), Gaps = 4/321 (1%)
Frame = +3
Query: 108 FTSDNYTED-DLGSGDYD-SIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVM 281
F +N T D G + D S PC ++ + +F+R FLP +YS++FL G++GNG V V+
Sbjct: 18 FLLENSTSPYDYGENESDFSDSPPCPQDFSLNFDRTFLPALYSLLFLLGLLGNGAVAAVL 77
Query: 282 GYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSS 461
Q+ S TD + LHL+VAD+L VLTLP WAVDA W FG LCK ++ +N Y+
Sbjct: 78 LSQRTALSSTDTFLLHLAVADVLLVLTLPLWAVDAAVQWVFGPGLCKVAGALFNINFYAG 137
Query: 462 VLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIF--ANVREGD 635
+LA IS DRYL+IVHAT R + + + VW LL +PDFI+ AN +
Sbjct: 138 AFLLACISFDRYLSIVHATQIYRRDPRVRVALTCIVVWGLCLLFALPDFIYLSANYDQRL 197
Query: 636 GRYICDRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTT 815
C +P + + ++ G +LP +V+ CY I++ L S+G ++ +A++
Sbjct: 198 NATHCQYNFP-QVGRTALRVLQLVAGFLLPLLVMAYCYAHILAVLLVSRGQRRFRAMRLV 256
Query: 816 VILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPIL 995
V+++ AF CW PY++ + +D + + ++ + C ES V S+T + + HCCLNP+L
Sbjct: 257 VVVVAAFAVCWTPYHLVVLVDILMDVGVLARNCGRESHVDVAKSVTSGMGYMHCCLNPLL 316
Query: 996 YAFLGAKFKTSAQHALTSVSR 1058
YAF+G KF+ T + R
Sbjct: 317 YAFVGVKFREQMWMLFTRLGR 337
>gi|6671772|ref|NP_031745.1| (NM_007719) chemokine (C-C motif)
receptor 7; chemokine (C-C) receptor 7 [Mus musculus]
Length = 378
Score = 220 bits (560), Expect = 1e-57
Identities = 113/313 (36%), Positives = 181/313 (57%), Gaps = 7/313 (2%)
Frame = +3
Query: 108 FTSDNYTEDDLGSG---DYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILV 278
F D T+D +G DY + CF+++ +F FLP +YS+I G++GNGLVIL
Sbjct: 23 FCQDEVTDDYIGENTTVDYTLYESVCFKKDVRNFKAWFLPLMYSVICFVGLLGNGLVILT 82
Query: 279 MGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYS 458
Y K+L++MTD Y L+L+VAD+LF+L LPFWA +W FG +LCK + IY ++ +S
Sbjct: 83 YIYFKRLKTMTDTYLLNLAVADILFLLILPFWAYSEAKSWIFGVYLCKGIFGIYKLSFFS 142
Query: 459 SVLILAFISLDRYLAIVHAT--NSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVRE- 629
+L+L IS+DRY+AIV A + R R LL K+ VG+W+ AL L+IP+ +++ +++
Sbjct: 143 GMLLLLCISIDRYVAIVQAVSRHRHRARVLLISKLSCVGIWMLALFLSIPELLYSGLQKN 202
Query: 630 -GDGRYICDRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKAL 806
G+ C L+ Q ++ G ++P + + CY III L ++ +++ KA+
Sbjct: 203 SGEDTLRCSLVSAQVEALITIQVAQMVFGFLVPMLAMSFCYLIIIRTLLQARNFERNKAI 262
Query: 807 KTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLN 986
K + +++ F LPY + + I CE ++ +T +LA CC+N
Sbjct: 263 KVIIAVVVVFIVFQLPYNGVVLAQTVANFNITNSSCETSKQLNIAYDVTYSLASVRCCVN 322
Query: 987 PILYAFLGAKFKT 1025
P LYAF+G KF++
Sbjct: 323 PFLYAFIGVKFRS 335
>gi|6857773|ref|NP_034046.1| (NM_009916) chemokine (C-C motif)
receptor 4; chemokine (C-C) receptor 4; CC CKR-4;
leukocyte-expressed seven-transmembrane-domain receptor
[Mus musculus]
Length = 360
Score = 218 bits (554), Expect = 5e-57
Identities = 109/292 (37%), Positives = 170/292 (57%), Gaps = 2/292 (0%)
Frame = +3
Query: 153 YDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHL 332
Y+S+ +PC +E F +FLP +YS++FL G+ GN +V+LV+ K+L+SMTD Y L+L
Sbjct: 22 YESMPKPCTKEGIKAFGEVFLPPLYSLVFLLGLFGNSVVVLVLFKYKRLKSMTDVYLLNL 81
Query: 333 SVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVH 512
+++DLLFVL+LPFW A W FG LCK V +Y V YS + + +S+DRYLAIVH
Sbjct: 82 AISDLLFVLSLPFWGYYAADQWVFGLGLCKIVSWMYLVGFYSGIFFIMLMSIDRYLAIVH 141
Query: 513 ATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDGRYICDRFYP--NDLWLVV 686
A S + R L + + W A+ ++P +F+ C Y + W V+
Sbjct: 142 AVFSLKARTLTYGVITSLITWSVAVFASLPGLLFSTCYTEHNHTYCKTQYSVNSTTWKVL 201
Query: 687 FQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILAFFACWLPYYIG 866
+ ++GL++P ++L Y +II L H K +K +A++ +++ F W PY +
Sbjct: 202 SSLEINVLGLLIPLGIMLFWYSMIIRTLQHCKNEKKNRAVRMIFGVVVLFLGFWTPYNVV 261
Query: 867 ISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFK 1022
+ +++ + LE++Q C E + I TE L F HCCLNP++Y FLG KF+
Sbjct: 262 LFLETLVELEVLQD-CTLERYLDYAIQATETLGFIHCCLNPVIYFFLGEKFR 312
>gi|6753318|ref|NP_033965.1| (NM_009835) chemokine (C-C motif)
receptor 6 [Mus musculus]
Length = 367
Score = 213 bits (542), Expect = 1e-55
Identities = 114/316 (36%), Positives = 179/316 (56%), Gaps = 15/316 (4%)
Frame = +3
Query: 120 NYTEDDLGSGDYDSIKE--------PCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVIL 275
N TE G+ DYD+ + PC EE +F ++F+P YS+I + G++GN +V++
Sbjct: 2 NSTESYFGTDDYDNTEYYSIPPDHGPCSLEEVRNFTKVFVPIAYSLICVFGLLGNIMVVM 61
Query: 276 VMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVAN-WYFGKFLCKAVHVIYTVNL 452
+ KK RSMTD Y L++++ D+LFVLTLPFWAV N W F LCK + Y VN
Sbjct: 62 TFAFYKKARSMTDVYLLNMAITDILFVLTLPFWAVTHATNTWVFSDALCKLMKGTYAVNF 121
Query: 453 YSSVLILAFISLDRYLAIVHATNS--QRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVR 626
+L+LA IS+DRY+AIV AT S R R L KV+ V VW +++++ P FIF
Sbjct: 122 NCGMLLLACISMDRYIAIVQATKSFRVRSRTLTHSKVICVAVWFISIIISSPTFIFNKKY 181
Query: 627 EGDGRYICDRFYPN----DLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQK 794
E R +C+ Y + W ++ + G P + ++ CY II L ++ ++
Sbjct: 182 ELQDRDVCEPRYRSVSEPITWKLLGMGLELFFGFFTPLLFMVFCYLFIIKTLVQAQNSKR 241
Query: 795 RKALKTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFH 974
+A++ + ++L F AC +P+ + + + + + + + C E + ++ E LAF H
Sbjct: 242 HRAIRVVIAVVLVFLACQIPHNMVLLVTA-VNTGKVGRSCSTEKVLAYTRNVAEVLAFLH 300
Query: 975 CCLNPILYAFLGAKFK 1022
CCLNP+LYAF+G KF+
Sbjct: 301 CCLNPVLYAFIGQKFR 316
>gi|6753462|ref|NP_034043.1| (NM_009913) chemokine (C-C motif)
receptor 9; chemokine (C-C) receptor 10 [Mus musculus]
Length = 369
Score = 208 bits (530), Expect = 3e-54
Identities = 107/289 (37%), Positives = 165/289 (57%), Gaps = 6/289 (2%)
Frame = +3
Query: 174 CFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF 353
C + F FLP +Y ++F+ G +GN LVILV Y ++++MTD + L+L++ADLLF
Sbjct: 38 CKKNNVRQFASHFLPPLYWLVFIVGTLGNSLVILVYWYCTRVKTMTDMFLLNLAIADLLF 97
Query: 354 VLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVHATNSQ-- 527
+ TLPFWA+ A W F F+CK V+ +Y +N YS VL++ IS+DRY+AIV A +Q
Sbjct: 98 LATLPFWAIAAAGQWMFQTFMCKVVNSMYKMNFYSCVLLIMCISVDRYIAIVQAMKAQVW 157
Query: 528 RPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDGRYICDRFYPND----LWLVVFQF 695
R ++LL K+V + +W+ A +L P+ +++ V G C YP D L V
Sbjct: 158 RQKRLLYSKMVCITIWVMAAVLCTPEILYSQVSGESGIATCTMVYPKDKNAKLKSAVLIL 217
Query: 696 QHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILAFFACWLPYYIGISI 875
+ + +G LP +V+ CY III L +K K KALK T+ ++ F PY + +
Sbjct: 218 K-VTLGFFLPFMVMAFCYTIIIHTLVQAKKSSKHKALKVTITVLTVFIMSQFPYNSILVV 276
Query: 876 DSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFK 1022
+ + C + + +T+ +AFFH CLNP+LY F+G +F+
Sbjct: 277 QAVDAYAMFISNCTISTNIDICFQVTQTIAFFHSCLNPVLYVFVGERFR 325
>gi|6753456|ref|NP_034039.1| (NM_009909) interleukin 8 receptor beta;
chemokine (C-X-C) receptor 2; IL-8 receptor alpha chain;
interleukin-8 receptor type B [Mus musculus]
Length = 359
Score = 202 bits (515), Expect = 2e-52
Identities = 115/320 (35%), Positives = 173/320 (53%), Gaps = 15/320 (4%)
Frame = +3
Query: 108 FTSDNYTEDDLGSGDYDSIKE------------PCFREENAHFNRIFLPTVYSIIFLTGI 251
F D + +D SGD D PC EN N + +Y ++ L +
Sbjct: 4 FKVDKFNIEDFFSGDLDIFNYSSGMPSILPDAVPC-HSENLEINSYAVVVIYVLVTLLSL 62
Query: 252 VGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVH 431
VGN LV+LV+ Y + S+TD Y L+L++ADL F LTLP WA V W FG LCK
Sbjct: 63 VGNSLVMLVILYNRSTCSVTDVYLLNLAIADLFFALTLPVWAASKVNGWTFGSTLCKIFS 122
Query: 432 VIYTVNLYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFI 611
+ V YSSVL+LA IS+DRYLAIVHAT++ ++ L K V + +W+ +++L +P I
Sbjct: 123 YVKEVTFYSSVLLLACISMDRYLAIVHATSTLIQKRHLV-KFVCIAMWLLSVILALPILI 181
Query: 612 FAN-VREGDGRYICDRFYPNDL--WLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSK 782
N V+ +C N+ VV + G ++P +++L CY + L +
Sbjct: 182 LRNPVKVNLSTLVCYEDVGNNTSRLRVVLRILPQTFGFLVPLLIMLFCYGFTLRTLFKAH 241
Query: 783 GYQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEAL 962
QK +A++ ++L F CWLPY + + D+ + ++I++ CE + K ++ TE L
Sbjct: 242 MGQKHRAMRVIFAVVLVFLLCWLPYNLVLFTDTLMRTKLIKETCERRDDIDKALNATEIL 301
Query: 963 AFFHCCLNPILYAFLGAKFK 1022
F H CLNPI+YAF+G KF+
Sbjct: 302 GFLHSCLNPIIYAFIGQKFR 321
>gi|31542483|ref|NP_067622.2| (NM_021609) D6 beta-chemokine receptor
[Mus musculus]
Length = 378
Score = 202 bits (513), Expect = 3e-52
Identities = 100/298 (33%), Positives = 170/298 (56%), Gaps = 7/298 (2%)
Frame = +3
Query: 150 DYDSIKEP----CFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSMTDK 317
DYD + + C ++E F R+FLP VYS+IF+ G+ GN L+++V+ + R +
Sbjct: 23 DYDYLDDMTILVCRKDEVLSFGRVFLPVVYSLIFVLGLAGNLLLLVVLLHSAPRRRTMEL 82
Query: 318 YRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISLDRY 497
Y L+L+V++LLFV+T+PFWA+ +W FG FLCK + +Y++N Y + + +SLD+Y
Sbjct: 83 YLLNLAVSNLLFVVTMPFWAISVAWHWVFGSFLCKVISTLYSINFYCGIFFITCMSLDKY 142
Query: 498 LAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREG-DGRYICDRFYPN-- 668
L IVHA RP+ ++ V VWI +L +++P+ +F + + DG + C +
Sbjct: 143 LEIVHAQPLHRPKAQFRNLLLIVMVWITSLAISVPEMVFVQIHQTLDGVWHCYADFGGHA 202
Query: 669 DLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILAFFACW 848
+W + +FQ ++G +LP + ++ Y I L + + +AL+ L++ FF W
Sbjct: 203 TIWKLYLRFQLNLLGFLLPLLAMIFFYSRIGCVLVRLRPPGQGRALRMAAALVIVFFMLW 262
Query: 849 LPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFK 1022
PY + + + S + L + CE + + +TE+LAF HCC P+LYAF +F+
Sbjct: 263 FPYNLTLFLHSLLDLHVF-GNCEISHRLDYTLQVTESLAFSHCCFTPVLYAFCSHRFR 319
>gi|6680790|ref|NP_031577.1| (NM_007551) Burkitt lymphoma receptor 1
[Mus musculus]
Length = 374
Score = 202 bits (513), Expect = 3e-52
Identities = 103/293 (35%), Positives = 165/293 (56%), Gaps = 8/293 (2%)
Frame = +3
Query: 198 FNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWA 377
F +F+P YS+IFL G++GN LV++++ + RS T+ + HL+VADLL V LPF
Sbjct: 51 FKAVFMPVAYSLIFLLGMMGNILVLVILERHRHTRSSTETFLFHLAVADLLLVFILPFAV 110
Query: 378 VDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKV 557
+ W G FLCK V ++ +N Y S L++A I++DRYLAIVHA ++ R R+LL+ +
Sbjct: 111 AEGSVGWVLGTFLCKTVIALHKINFYCSSLLVACIAVDRYLAIVHAVHAYRRRRLLSIHI 170
Query: 558 VYVGVWIPALLLTIPDFIFANV---REGDGRYICDRFYPND----LWLVVFQFQHIMVGL 716
+W+ L +P+ +FA V D C N+ W +F + + G
Sbjct: 171 TCTAIWLAGFLFALPELLFAKVGQPHNNDSLPQCTFSQENEAETRAWF-TSRFLYHIGGF 229
Query: 717 ILPGIVILSCYCIIISKLSHS-KGYQKRKALKTTVILILAFFACWLPYYIGISIDSFILL 893
+LP +V+ CY ++ +L + + Q++KA++ +++ FF CW PY+I I +D+ L
Sbjct: 230 LLPMLVMGWCYVGVVHRLLQAQRRPQRQKAVRVAILVTSIFFLCWSPYHIVIFLDTLERL 289
Query: 894 EIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSV 1052
+ + CE + I++ E L HCCLNP+LY F G KF++ LT +
Sbjct: 290 KAVNSSCELSGYLSVAITLCEFLGLAHCCLNPMLYTFAGVKFRSDLSRLLTKL 342
>gi|6671774|ref|NP_031746.1| (NM_007720) chemokine (C-C motif)
receptor 8; chemokine (C-C) receptor 8 [Mus musculus]
Length = 353
Score = 200 bits (509), Expect = 9e-52
Identities = 107/306 (34%), Positives = 174/306 (55%), Gaps = 5/306 (1%)
Frame = +3
Query: 120 NYT-EDDLGSGDY--DSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQ 290
+YT E ++ DY D PC E + ++L +Y ++F+ G++GN LVILV+
Sbjct: 2 DYTMEPNVTMTDYYPDFFTAPCDAEFLLRGSMLYLAILYCVLFVLGLLGNSLVILVLVGC 61
Query: 291 KKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLI 470
KKLRS+TD Y L+L+ +DLLFVL++PF + + W FG +CK V +Y + +SS+
Sbjct: 62 KKLRSITDIYLLNLAASDLLFVLSIPFQTHNLLDQWVFGTAMCKVVSGLYYIGFFSSMFF 121
Query: 471 LAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDGRYIC 650
+ +S+DRYLAIVHA + + R + + VW+ A+ TIP +F V DG C
Sbjct: 122 ITLMSVDRYLAIVHAVYAIKVRTASVGTALSLTVWLAAVTATIPLMVFYQVASEDGMLQC 181
Query: 651 DRFYPND--LWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVIL 824
+FY W + F+ +GL+LP ++L CY I+ +L + + +A+K + +
Sbjct: 182 FQFYEEQSLRWKLFTHFEINALGLLLPFAILLFCYVRILQQLRGCLNHNRTRAIKLVLTV 241
Query: 825 ILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAF 1004
++ W+P+ + + + S L I+ GC + I +TE ++F HCC+NP++YAF
Sbjct: 242 VIVSLLFWVPFNVALFLTSLHDLHIL-DGCATRQRLALAIHVTEVISFTHCCVNPVIYAF 300
Query: 1005 LGAKFK 1022
+G KFK
Sbjct: 301 IGEKFK 306
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 7,155,815
Number of sequences in database: 15,330
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17054580
Number of Sequences: 15330
Number of extensions: 452395
Number of successful extensions: 2238
Number of sequences better than 10.0: 391
Number of HSP's better than 10.0 without gapping: 1623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1816
length of query: 360
length of database: 7,155,815
effective HSP length: 47
effective length of query: 312
effective length of database: 6,435,305
effective search space: 2007815160
effective search space used: 2007815160
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)