Search to RefSeq (Human) database
Query= 20030531C-003954 (20030531C-003954) 20030531C-003954
(954 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,244 sequences; 10,046,356 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4502641|ref|NP_001829.1| (NM_001838) chemokine (C-C motif) r... 511 e-145
Alignment gi|14043042|ref|NP_112477.1| (NM_031200) chemokine (C-C motif) ... 218 5e-57
Alignment gi|14043044|ref|NP_006632.2| (NM_006641) chemokine (C-C motif) ... 218 5e-57
Alignment gi|14043040|ref|NP_113597.1| (NM_031409) chemokine (C-C motif) ... 202 4e-52
Alignment gi|4757940|ref|NP_004358.1| (NM_004367) chemokine (C-C motif) r... 202 4e-52
Alignment gi|5031627|ref|NP_005499.1| (NM_005508) chemokine (C-C motif) r... 186 3e-47
Alignment gi|7706769|ref|NP_057641.1| (NM_016557) chemokine (C-C motif) r... 183 2e-46
Alignment gi|30795217|ref|NP_848540.1| (NM_178445) chemokine (C-C motif) ... 183 2e-46
Alignment gi|5730106|ref|NP_006555.1| (NM_006564) G protein-coupled recep... 176 2e-44
Alignment gi|4503175|ref|NP_003458.1| (NM_003467) chemokine (C-X-C motif)... 171 5e-43
>gi|4502641|ref|NP_001829.1| (NM_001838) chemokine (C-C motif)
receptor 7 precursor; Epstein-Barr virus induced gene 1;
lymphocyte-specific G protein-coupled peptide receptor;
chemokine (C-C) receptor 7; C-C chemokine receptor type
7; Epstein-Barr virus induced G-protein coupled
receptor; MIP-3 beta receptor; EBV-induced G
protein-coupled receptor 1 [Homo sapiens]
Length = 378
Score = 511 bits (1316), Expect = e-145
Identities = 260/298 (87%), Positives = 272/298 (91%)
Frame = +2
Query: 56 MDLGKPMKKSLLVVALLVIFQVCLCQDEVTDDYIGDNTTVDYTLYESVCFKKDVRTFKAW 235
MDLGKPMK S+LVVALLVIFQVCLCQDEVTDDYIGDNTTVDYTL+ES+C KKDVR FKAW
Sbjct: 1 MDLGKPMK-SVLVVALLVIFQVCLCQDEVTDDYIGDNTTVDYTLFESLCSKKDVRNFKAW 59
Query: 236 FLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAA 415
FLP+MYSIICFVGLLGNGLV+LTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAA
Sbjct: 60 FLPIMYSIICFVGLLGNGLVVLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAA 119
Query: 416 KSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSC 595
KSWVFGVH CKLIF IYK+SFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSC
Sbjct: 120 KSWVFGVHFCKLIFAIYKMSFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSC 179
Query: 596 VGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAM 775
VGIW+LA VLS PELLYS Q+SSSEQA+RCSLITEHVEA ITIQVAQMV+GFL+PL+AM
Sbjct: 180 VGIWILATVLSIPELLYSDLQRSSSEQAMRCSLITEHVEAFITIQVAQMVIGFLVPLLAM 239
Query: 776 SFCYLVIIRTLLQARNFERNKAHXXXXXXXXXXXXXXLPYNGVVLAQTVANFNITSGT 949
SFCYLVIIRTLLQARNFERNKA LPYNGVVLAQTVANFNITS T
Sbjct: 240 SFCYLVIIRTLLQARNFERNKAIKVIIAVVVVFIVFQLPYNGVVLAQTVANFNITSST 297
>gi|14043042|ref|NP_112477.1| (NM_031200) chemokine (C-C motif)
receptor 9 isoform A [Homo sapiens]
Length = 369
Score = 218 bits (555), Expect = 5e-57
Identities = 113/272 (41%), Positives = 171/272 (62%), Gaps = 11/272 (4%)
Frame = +2
Query: 140 VTDDYIGDNTT-----VDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLT 304
+ DDY ++T+ V++ + C K +VR F + FLP +Y ++ VG LGN LV+L
Sbjct: 13 MADDYGSESTSSMEDYVNFNFTDFYCEKNNVRQFASHFLPPLYWLVFIVGALGNSLVILV 72
Query: 305 YIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFS 484
Y Y R+KTMTD +LLNLA+AD+LFL+TLPFWA +AA W F +CK++ +YK++F+S
Sbjct: 73 YWYCTRVKTMTDMFLLNLAIADLLFLVTLPFWAIAAADQWKFQTFMCKVVNSMYKMNFYS 132
Query: 485 GMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKS 664
+LL++CIS+DRY+AI QA+ AH R + LL SK+ C IW+LA L PE+LYS ++
Sbjct: 133 CVLLIMCISVDRYIAIAQAMRAHTWREKRLLYSKMVCFTIWVLAAALCIPEILYSQIKEE 192
Query: 665 SSEQALRCSLI------TEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNF 826
S C+++ T+ A++T++V ++GF +P V M+ CY +II TL+QA+
Sbjct: 193 SG--IAICTMVYPSDESTKLKSAVLTLKV---ILGFFLPFVVMACCYTIIIHTLIQAKKS 247
Query: 827 ERNKAHXXXXXXXXXXXXXXLPYNGVVLAQTV 922
++KA PYN ++L QT+
Sbjct: 248 SKHKALKVTITVLTVFVLSQFPYNCILLVQTI 279
>gi|14043044|ref|NP_006632.2| (NM_006641) chemokine (C-C motif)
receptor 9 isoform B [Homo sapiens]
Length = 357
Score = 218 bits (555), Expect = 5e-57
Identities = 113/272 (41%), Positives = 171/272 (62%), Gaps = 11/272 (4%)
Frame = +2
Query: 140 VTDDYIGDNTT-----VDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLT 304
+ DDY ++T+ V++ + C K +VR F + FLP +Y ++ VG LGN LV+L
Sbjct: 1 MADDYGSESTSSMEDYVNFNFTDFYCEKNNVRQFASHFLPPLYWLVFIVGALGNSLVILV 60
Query: 305 YIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFS 484
Y Y R+KTMTD +LLNLA+AD+LFL+TLPFWA +AA W F +CK++ +YK++F+S
Sbjct: 61 YWYCTRVKTMTDMFLLNLAIADLLFLVTLPFWAIAAADQWKFQTFMCKVVNSMYKMNFYS 120
Query: 485 GMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKS 664
+LL++CIS+DRY+AI QA+ AH R + LL SK+ C IW+LA L PE+LYS ++
Sbjct: 121 CVLLIMCISVDRYIAIAQAMRAHTWREKRLLYSKMVCFTIWVLAAALCIPEILYSQIKEE 180
Query: 665 SSEQALRCSLI------TEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNF 826
S C+++ T+ A++T++V ++GF +P V M+ CY +II TL+QA+
Sbjct: 181 SG--IAICTMVYPSDESTKLKSAVLTLKV---ILGFFLPFVVMACCYTIIIHTLIQAKKS 235
Query: 827 ERNKAHXXXXXXXXXXXXXXLPYNGVVLAQTV 922
++KA PYN ++L QT+
Sbjct: 236 SKHKALKVTITVLTVFVLSQFPYNCILLVQTI 267
>gi|14043040|ref|NP_113597.1| (NM_031409) chemokine (C-C motif)
receptor 6; G protein-coupled receptor 29; chemokine
(C-C) receptor 6; seven-transmembrane receptor,
lymphocyte, 22; chemokine receptor-like 3 [Homo sapiens]
Length = 374
Score = 202 bits (513), Expect = 4e-52
Identities = 110/269 (40%), Positives = 172/269 (63%), Gaps = 7/269 (2%)
Frame = +2
Query: 143 TDDYIGDNTTVDYTLYESV--CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYF 316
++DY T Y++ + C ++VR F F+P+ YS+IC GLLGN LV++T+ ++
Sbjct: 15 SEDYFVSVNTSYYSVDSEMLLCSLQEVRQFSRLFVPIAYSLICVFGLLGNILVVITFAFY 74
Query: 317 KRLKTMTDTYLLNLAVADILFLLTLPFWAYS-AAKSWVFGVHVCKLIFGIYKISFFSGML 493
K+ ++MTD YLLN+A+ADILF+LTLPFWA S A +WVF CKL+ GIY I+F GML
Sbjct: 75 KKARSMTDVYLLNMAIADILFVLTLPFWAVSHATGAWVFSNATCKLLKGIYAINFNCGML 134
Query: 494 LLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSE 673
LL CIS+DRY+AIVQA + R R+R L +K+ C+ +W L++++S+ +++ QK +++
Sbjct: 135 LLTCISMDRYIAIVQATKSFRLRSRTLPRTKIICLVVWGLSVIISSSTFVFN--QKYNTQ 192
Query: 674 QALRC----SLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNKA 841
+ C ++E + + + +++ GF IPL+ M FCY I++TL+QA+N +R+KA
Sbjct: 193 GSDVCEPKYQTVSEPIRWKLLMLGLELLFGFFIPLMFMIFCYTFIVKTLVQAQNSKRHKA 252
Query: 842 HXXXXXXXXXXXXXXLPYNGVVLAQTVAN 928
+P+N +VL T AN
Sbjct: 253 IRVIIAVVLVFLACQIPHN-MVLLVTAAN 280
>gi|4757940|ref|NP_004358.1| (NM_004367) chemokine (C-C motif)
receptor 6; G protein-coupled receptor 29; chemokine
(C-C) receptor 6; seven-transmembrane receptor,
lymphocyte, 22; chemokine receptor-like 3 [Homo sapiens]
Length = 374
Score = 202 bits (513), Expect = 4e-52
Identities = 110/269 (40%), Positives = 172/269 (63%), Gaps = 7/269 (2%)
Frame = +2
Query: 143 TDDYIGDNTTVDYTLYESV--CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYF 316
++DY T Y++ + C ++VR F F+P+ YS+IC GLLGN LV++T+ ++
Sbjct: 15 SEDYFVSVNTSYYSVDSEMLLCSLQEVRQFSRLFVPIAYSLICVFGLLGNILVVITFAFY 74
Query: 317 KRLKTMTDTYLLNLAVADILFLLTLPFWAYS-AAKSWVFGVHVCKLIFGIYKISFFSGML 493
K+ ++MTD YLLN+A+ADILF+LTLPFWA S A +WVF CKL+ GIY I+F GML
Sbjct: 75 KKARSMTDVYLLNMAIADILFVLTLPFWAVSHATGAWVFSNATCKLLKGIYAINFNCGML 134
Query: 494 LLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSE 673
LL CIS+DRY+AIVQA + R R+R L +K+ C+ +W L++++S+ +++ QK +++
Sbjct: 135 LLTCISMDRYIAIVQATKSFRLRSRTLPRTKIICLVVWGLSVIISSSTFVFN--QKYNTQ 192
Query: 674 QALRC----SLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNKA 841
+ C ++E + + + +++ GF IPL+ M FCY I++TL+QA+N +R+KA
Sbjct: 193 GSDVCEPKYQTVSEPIRWKLLMLGLELLFGFFIPLMFMIFCYTFIVKTLVQAQNSKRHKA 252
Query: 842 HXXXXXXXXXXXXXXLPYNGVVLAQTVAN 928
+P+N +VL T AN
Sbjct: 253 IRVIIAVVLVFLACQIPHN-MVLLVTAAN 280
>gi|5031627|ref|NP_005499.1| (NM_005508) chemokine (C-C motif)
receptor 4; chemokine (C-C) receptor 4 [Homo sapiens]
Length = 360
Score = 186 bits (471), Expect = 3e-47
Identities = 100/272 (36%), Positives = 163/272 (59%), Gaps = 5/272 (1%)
Frame = +2
Query: 137 EVTDDYIGDNTTVDYTLYESV---CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTY 307
++ D + ++ +Y LYES+ C K+ ++ F FLP +YS++ GLLGN +V+L
Sbjct: 5 DIADTTLDESIYSNYYLYESIPKPCTKEGIKAFGELFLPPLYSLVFVFGLLGNSVVVLVL 64
Query: 308 IYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSG 487
+KRL++MTD YLLNLA++D+LF+ +LPFW Y AA WVFG+ +CK+I +Y + F+SG
Sbjct: 65 FKYKRLRSMTDVYLLNLAISDLLFVFSLPFWGYYAADQWVFGLGLCKMISWMYLVGFYSG 124
Query: 488 MLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSG--TQK 661
+ ++ +SIDRY+AIV AV + RAR L ++ + W +A+ S P L+S T++
Sbjct: 125 IFFVMLMSIDRYLAIVHAVFS--LRARTLTYGVITSLATWSVAVFASLPGFLFSTCYTER 182
Query: 662 SSSEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNKA 841
+ + + SL + + L ++++ ++G +IPL M FCY +IIRTL +N ++NKA
Sbjct: 183 NHTYCKTKYSLNSTTWKVLSSLEI--NILGLVIPLGIMLFCYSMIIRTLQHCKNEKKNKA 240
Query: 842 HXXXXXXXXXXXXXXLPYNGVVLAQTVANFNI 937
PYN V+ +T+ +
Sbjct: 241 VKMIFAVVVLFLGFWTPYNIVLFLETLVELEV 272
>gi|7706769|ref|NP_057641.1| (NM_016557) chemokine (C-C motif)
receptor-like 1; orphan seven-transmembrane receptor,
chemokine related; chemokine, cc motif, receptor-like
protein 1; C-C chemokine receptor type 11; chemocentryx
chemokine receptor [Homo sapiens]
Length = 350
Score = 183 bits (464), Expect = 2e-46
Identities = 99/271 (36%), Positives = 154/271 (56%), Gaps = 3/271 (1%)
Frame = +2
Query: 119 VCLCQDEVTDDYIGDNT---TVDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNG 289
+ L Q++ TD Y +N T DY+ YE +C K+DVR F FLPV +I+ +GL GN
Sbjct: 1 MALEQNQSTDYYYEENEMNGTYDYSQYELICIKEDVREFAKVFLPVFLTIVFVIGLAGNS 60
Query: 290 LVMLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYK 469
+V+ Y Y+K+ +T TD Y+LNLAVAD+L L TLPFWA +A WV G +CK+ +Y
Sbjct: 61 MVVAIYAYYKKQRTKTDVYILNLAVADLLLLFTLPFWAVNAVHGWVLGKIMCKITSALYT 120
Query: 470 ISFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYS 649
++F SGM L CISIDRYVA+ + S ++ V + C +WM A++LS P+L++
Sbjct: 121 LNFVSGMQFLACISIDRYVAVTKVPS----QSGVGKPCWIICFCVWMAAILLSIPQLVFY 176
Query: 650 GTQKSSSEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFE 829
++ + + ++AL IQ+ ++ +GF++P + M CY + RTL++ N +
Sbjct: 177 TVNDNARCIPIFPRYLGTSMKAL--IQMLEICIGFVVPFLIMGVCYFITARTLMKMPNIK 234
Query: 830 RNKAHXXXXXXXXXXXXXXLPYNGVVLAQTV 922
++ LPYN V + +
Sbjct: 235 ISRPLKVLLTVVIVFIVTQLPYNIVKFCRAI 265
>gi|30795217|ref|NP_848540.1| (NM_178445) chemokine (C-C motif)
receptor-like 1; orphan seven-transmembrane receptor,
chemokine related; chemokine, cc motif, receptor-like
protein 1; C-C chemokine receptor type 11; chemocentryx
chemokine receptor [Homo sapiens]
Length = 350
Score = 183 bits (464), Expect = 2e-46
Identities = 99/271 (36%), Positives = 154/271 (56%), Gaps = 3/271 (1%)
Frame = +2
Query: 119 VCLCQDEVTDDYIGDNT---TVDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNG 289
+ L Q++ TD Y +N T DY+ YE +C K+DVR F FLPV +I+ +GL GN
Sbjct: 1 MALEQNQSTDYYYEENEMNGTYDYSQYELICIKEDVREFAKVFLPVFLTIVFVIGLAGNS 60
Query: 290 LVMLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYK 469
+V+ Y Y+K+ +T TD Y+LNLAVAD+L L TLPFWA +A WV G +CK+ +Y
Sbjct: 61 MVVAIYAYYKKQRTKTDVYILNLAVADLLLLFTLPFWAVNAVHGWVLGKIMCKITSALYT 120
Query: 470 ISFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYS 649
++F SGM L CISIDRYVA+ + S ++ V + C +WM A++LS P+L++
Sbjct: 121 LNFVSGMQFLACISIDRYVAVTKVPS----QSGVGKPCWIICFCVWMAAILLSIPQLVFY 176
Query: 650 GTQKSSSEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFE 829
++ + + ++AL IQ+ ++ +GF++P + M CY + RTL++ N +
Sbjct: 177 TVNDNARCIPIFPRYLGTSMKAL--IQMLEICIGFVVPFLIMGVCYFITARTLMKMPNIK 234
Query: 830 RNKAHXXXXXXXXXXXXXXLPYNGVVLAQTV 922
++ LPYN V + +
Sbjct: 235 ISRPLKVLLTVVIVFIVTQLPYNIVKFCRAI 265
>gi|5730106|ref|NP_006555.1| (NM_006564) G protein-coupled receptor
TYMSTR; G protein-coupled receptor [Homo sapiens]
Length = 342
Score = 176 bits (447), Expect = 2e-44
Identities = 84/231 (36%), Positives = 146/231 (62%), Gaps = 1/231 (0%)
Frame = +2
Query: 209 KDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTYLLNLAVADILFLLT 388
+D F FLP MY ++ GL+GN LV++ I++ +L+++TD +L+NL +AD++F+ T
Sbjct: 24 QDFLQFSKVFLPCMYLVVFVCGLVGNSLVLVISIFYHKLQSLTDVFLVNLPLADLVFVCT 83
Query: 389 LPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYVAIVQAVSAHRHRAR 568
LPFWAY+ WVFG +CK + GIY I+F++ ML+L CI++DR++ +V+A A+ +A+
Sbjct: 84 LPFWAYAGIHEWVFGQVMCKSLLGIYTINFYTSMLILTCITVDRFIVVVKATKAYNQQAK 143
Query: 569 VLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITEHVEALITIQVA-QMV 745
+ K++ + IW++++++S P+++Y + L C H EA+ T+ +A QM
Sbjct: 144 RMTWGKVTSLLIWVISLLVSLPQIIYGNV---FNLDKLICGY---HDEAISTVVLATQMT 197
Query: 746 VGFLIPLVAMSFCYLVIIRTLLQARNFERNKAHXXXXXXXXXXXXXXLPYN 898
+GF +PL+ M CY VII+TLL A F+++++ +P+N
Sbjct: 198 LGFFLPLLTMIVCYSVIIKTLLHAGGFQKHRSLKIIFLVMAVFLLTQMPFN 248
>gi|4503175|ref|NP_003458.1| (NM_003467) chemokine (C-X-C motif)
receptor 4; Neuropeptide Y receptor Y3; chemokine (C-X-C
motif), receptor 4 (fusin) [Homo sapiens]
Length = 352
Score = 171 bits (434), Expect = 5e-43
Identities = 88/251 (35%), Positives = 146/251 (58%)
Frame = +2
Query: 143 TDDYIGDNTTVDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYFKR 322
+D+Y + + DY + CF+++ F FLP +YSII G++GNGLV+L Y K+
Sbjct: 9 SDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKK 68
Query: 323 LKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGMLLLL 502
L++MTD Y L+L+VAD+LF++TLPFWA A +W FG +CK + IY ++ +S +L+L
Sbjct: 69 LRSMTDKYRLHLSVADLLFVITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVLILA 128
Query: 503 CISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSEQAL 682
IS+DRY+AIV A ++ R R LL K+ VG+W+ A++L+ P+ +++ S ++
Sbjct: 129 FISLDRYLAIVHATNS--QRPRKLLAEKVVYVGVWIPALLLTIPDFIFANV--SEADDRY 184
Query: 683 RCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNKAHXXXXXX 862
C + ++ Q ++VG ++P + + CY +II L ++ ++ KA
Sbjct: 185 ICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGHQKRKALKTTVIL 244
Query: 863 XXXXXXXXLPY 895
LPY
Sbjct: 245 ILAFFACWLPY 255
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 10,046,356
Number of sequences in database: 19,244
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13924549
Number of Sequences: 19244
Number of extensions: 274023
Number of successful extensions: 1639
Number of sequences better than 10.0: 286
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of query: 318
length of database: 10,046,356
effective HSP length: 47
effective length of query: 270
effective length of database: 9,141,888
effective search space: 2468309760
effective search space used: 2468309760
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search to RefSeq (Mouse) database
Query= 20030531C-003954 (20030531C-003954) 20030531C-003954
(954 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
15,330 sequences; 7,155,815 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|6671772|ref|NP_031745.1| (NM_007719) chemokine (C-C motif) r... 487 e-138
Alignment gi|6753462|ref|NP_034043.1| (NM_009913) chemokine (C-C motif) r... 218 3e-57
Alignment gi|6753318|ref|NP_033965.1| (NM_009835) chemokine (C-C motif) r... 201 4e-52
Alignment gi|13507658|ref|NP_109637.1| (NM_030712) chemokine (C-X-C motif... 187 7e-48
Alignment gi|6857773|ref|NP_034046.1| (NM_009916) chemokine (C-C motif) r... 178 3e-45
Alignment gi|21746187|ref|NP_663746.1| (NM_145700) chemokine (C-C) recept... 177 7e-45
Alignment gi|6753460|ref|NP_034041.1| (NM_009911) chemokine (C-X-C motif)... 164 6e-41
Alignment gi|31542356|ref|NP_034047.2| (NM_009917) chemokine (C-C motif) ... 162 3e-40
Alignment gi|6753466|ref|NP_034045.1| (NM_009915) chemokine (C-C) recepto... 161 4e-40
Alignment gi|6753458|ref|NP_034040.1| (NM_009910) chemokine (C-X-C motif)... 161 4e-40
>gi|6671772|ref|NP_031745.1| (NM_007719) chemokine (C-C motif)
receptor 7; chemokine (C-C) receptor 7 [Mus musculus]
Length = 378
Score = 487 bits (1254), Expect = e-138
Identities = 244/298 (81%), Positives = 265/298 (88%)
Frame = +2
Query: 56 MDLGKPMKKSLLVVALLVIFQVCLCQDEVTDDYIGDNTTVDYTLYESVCFKKDVRTFKAW 235
MD GKP +K++LVVALLVIFQVC CQDEVTDDYIG+NTTVDYTLYESVCFKKDVR FKAW
Sbjct: 1 MDPGKP-RKNVLVVALLVIFQVCFCQDEVTDDYIGENTTVDYTLYESVCFKKDVRNFKAW 59
Query: 236 FLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAA 415
FLP+MYS+ICFVGLLGNGLV+LTYIYFKRLKTMTDTYLLNLAVADILFLL LPFWAYS A
Sbjct: 60 FLPLMYSVICFVGLLGNGLVILTYIYFKRLKTMTDTYLLNLAVADILFLLILPFWAYSEA 119
Query: 416 KSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSC 595
KSW+FGV++CK IFGIYK+SFFSGMLLLLCISIDRYVAIVQAVS HRHRARVLLISKLSC
Sbjct: 120 KSWIFGVYLCKGIFGIYKLSFFSGMLLLLCISIDRYVAIVQAVSRHRHRARVLLISKLSC 179
Query: 596 VGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAM 775
VGIWMLA+ LS PELLYSG QK+S E LRCSL++ VEALITIQVAQMV GFL+P++AM
Sbjct: 180 VGIWMLALFLSIPELLYSGLQKNSGEDTLRCSLVSAQVEALITIQVAQMVFGFLVPMLAM 239
Query: 776 SFCYLVIIRTLLQARNFERNKAHXXXXXXXXXXXXXXLPYNGVVLAQTVANFNITSGT 949
SFCYL+IIRTLLQARNFERNKA LPYNGVVLAQTVANFNIT+ +
Sbjct: 240 SFCYLIIIRTLLQARNFERNKAIKVIIAVVVVFIVFQLPYNGVVLAQTVANFNITNSS 297
>gi|6753462|ref|NP_034043.1| (NM_009913) chemokine (C-C motif)
receptor 9; chemokine (C-C) receptor 10 [Mus musculus]
Length = 369
Score = 218 bits (555), Expect = 3e-57
Identities = 110/263 (41%), Positives = 166/263 (62%), Gaps = 3/263 (1%)
Frame = +2
Query: 143 TDDYIGDNTTVDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYFKR 322
TDDY+ N + + C K +VR F + FLP +Y ++ VG LGN LV+L Y Y R
Sbjct: 25 TDDYMNLNFSSFF------CKKNNVRQFASHFLPPLYWLVFIVGTLGNSLVILVYWYCTR 78
Query: 323 LKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGMLLLL 502
+KTMTD +LLNLA+AD+LFL TLPFWA +AA W+F +CK++ +YK++F+S +LL++
Sbjct: 79 VKTMTDMFLLNLAIADLLFLATLPFWAIAAAGQWMFQTFMCKVVNSMYKMNFYSCVLLIM 138
Query: 503 CISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSEQAL 682
CIS+DRY+AIVQA+ A R + LL SK+ C+ IW++A VL TPE+LYS Q S
Sbjct: 139 CISVDRYIAIVQAMKAQVWRQKRLLYSKMVCITIWVMAAVLCTPEILYS--QVSGESGIA 196
Query: 683 RCSLI---TEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNKAHXXX 853
C+++ ++ + + + ++ +GF +P + M+FCY +II TL+QA+ ++KA
Sbjct: 197 TCTMVYPKDKNAKLKSAVLILKVTLGFFLPFMVMAFCYTIIIHTLVQAKKSSKHKALKVT 256
Query: 854 XXXXXXXXXXXLPYNGVVLAQTV 922
PYN +++ Q V
Sbjct: 257 ITVLTVFIMSQFPYNSILVVQAV 279
>gi|6753318|ref|NP_033965.1| (NM_009835) chemokine (C-C motif)
receptor 6 [Mus musculus]
Length = 367
Score = 201 bits (511), Expect = 4e-52
Identities = 107/269 (39%), Positives = 163/269 (59%), Gaps = 9/269 (3%)
Frame = +2
Query: 143 TDDYIGDNTTVDYTLYESV------CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLT 304
TDDY D T Y S+ C ++VR F F+P+ YS+IC GLLGN +V++T
Sbjct: 10 TDDY-------DNTEYYSIPPDHGPCSLEEVRNFTKVFVPIAYSLICVFGLLGNIMVVMT 62
Query: 305 YIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYS-AAKSWVFGVHVCKLIFGIYKISFF 481
+ ++K+ ++MTD YLLN+A+ DILF+LTLPFWA + A +WVF +CKL+ G Y ++F
Sbjct: 63 FAFYKKARSMTDVYLLNMAITDILFVLTLPFWAVTHATNTWVFSDALCKLMKGTYAVNFN 122
Query: 482 SGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQK 661
GMLLL CIS+DRY+AIVQA + R R+R L SK+ CV +W +++++S+P +++ +
Sbjct: 123 CGMLLLACISMDRYIAIVQATKSFRVRSRTLTHSKVICVAVWFISIIISSPTFIFNKKYE 182
Query: 662 SSSEQAL--RCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERN 835
R ++E + + ++ GF PL+ M FCYL II+TL+QA+N +R+
Sbjct: 183 LQDRDVCEPRYRSVSEPITWKLLGMGLELFFGFFTPLLFMVFCYLFIIKTLVQAQNSKRH 242
Query: 836 KAHXXXXXXXXXXXXXXLPYNGVVLAQTV 922
+A +P+N V+L V
Sbjct: 243 RAIRVVIAVVLVFLACQIPHNMVLLVTAV 271
>gi|13507658|ref|NP_109637.1| (NM_030712) chemokine (C-X-C motif)
receptor 6; chemokine (C-X-C) receptor 6 [Mus musculus]
Length = 351
Score = 187 bits (475), Expect = 7e-48
Identities = 91/242 (37%), Positives = 150/242 (61%), Gaps = 2/242 (0%)
Frame = +2
Query: 224 FKAWFLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWA 403
FK FLP +Y ++ GLLGN LV++ YI++++L+T+TD +LLNL +AD++F+ TLPFWA
Sbjct: 38 FKEVFLPCVYLVVFVFGLLGNSLVLIIYIFYQKLRTLTDVFLLNLPLADLVFVCTLPFWA 97
Query: 404 YSAAKSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLIS 583
Y+ WVFG +CK + G+Y ++F+ ML L CI++DR++ +VQA A +A+ +
Sbjct: 98 YAGTYEWVFGTVMCKTLRGMYTMNFYVSMLTLTCITVDRFIVVVQATKAFNRQAKWKIWG 157
Query: 584 KLSCVGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITEHVEALITIQVAQMVVGFLIP 763
++ C+ IW++++++S P+++Y Q L C +E + ++ V QM GF +P
Sbjct: 158 QVICLLIWVVSLLVSLPQIIYGHVQDIDK---LICQYHSEEISTMVL--VIQMTRGFFLP 212
Query: 764 LVAMSFCYLVIIRTLLQARNFERNKAHXXXXXXXXXXXXXXLPYNGVVLAQTVA--NFNI 937
L+ M CY II+TLL ARNF+++K+ P+N +L Q+ + + I
Sbjct: 213 LLTMILCYSGIIKTLLHARNFQKHKSLKIIFLVVAVFLLTQTPFNLAMLIQSTSWEYYTI 272
Query: 938 TS 943
TS
Sbjct: 273 TS 274
Score = 30.0 bits (66), Expect = 1.8
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +2
Query: 215 VRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYFKRLK---TMTDTYLLNLAVADILFLL 385
++ + +FLP++ I+C+ G++ L + K LK + +LL ++ L+
Sbjct: 203 IQMTRGFFLPLLTMILCYSGIIKTLLHARNFQKHKSLKIIFLVVAVFLLTQTPFNLAMLI 262
Query: 386 TLPFWAYSAAKSWVFGVHVCKLI 454
W Y S+ + + V + I
Sbjct: 263 QSTSWEYYTITSFKYAIVVTEAI 285
>gi|6857773|ref|NP_034046.1| (NM_009916) chemokine (C-C motif)
receptor 4; chemokine (C-C) receptor 4; CC CKR-4;
leukocyte-expressed seven-transmembrane-domain receptor
[Mus musculus]
Length = 360
Score = 178 bits (452), Expect = 3e-45
Identities = 98/270 (36%), Positives = 150/270 (55%), Gaps = 3/270 (1%)
Frame = +2
Query: 137 EVTDDYIGDNTTVDYTLYESV---CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTY 307
EVTD + Y YES+ C K+ ++ F FLP +YS++ +GL GN +V+L
Sbjct: 5 EVTDTTQDETVYNSYYFYESMPKPCTKEGIKAFGEVFLPPLYSLVFLLGLFGNSVVVLVL 64
Query: 308 IYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSG 487
+KRLK+MTD YLLNLA++D+LF+L+LPFW Y AA WVFG+ +CK++ +Y + F+SG
Sbjct: 65 FKYKRLKSMTDVYLLNLAISDLLFVLSLPFWGYYAADQWVFGLGLCKIVSWMYLVGFYSG 124
Query: 488 MLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSS 667
+ ++ +SIDRY+AIV AV + +AR L ++ + W +A+ S P LL+S
Sbjct: 125 IFFIMLMSIDRYLAIVHAVFS--LKARTLTYGVITSLITWSVAVFASLPGLLFSTCYTEH 182
Query: 668 SEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNKAHX 847
+ + + + V+G LIPL M F Y +IIRTL +N ++N+A
Sbjct: 183 NHTYCKTQYSVNSTTWKVLSSLEINVLGLLIPLGIMLFWYSMIIRTLQHCKNEKKNRAVR 242
Query: 848 XXXXXXXXXXXXXLPYNGVVLAQTVANFNI 937
PYN V+ +T+ +
Sbjct: 243 MIFGVVVLFLGFWTPYNVVLFLETLVELEV 272
>gi|21746187|ref|NP_663746.1| (NM_145700) chemokine (C-C)
receptor-like 1; chemokine receptor CCX-CKR; chemokine
receptor CCR11; A630091E18Rik [Mus musculus]
Length = 350
Score = 177 bits (449), Expect = 7e-45
Identities = 94/256 (36%), Positives = 141/256 (54%), Gaps = 3/256 (1%)
Frame = +2
Query: 164 NTTVDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDT 343
N T DY+ YE +C K++VR F FLP +++ GL GN +V+ Y Y+K+ +T TD
Sbjct: 19 NYTHDYSQYEVICIKEEVRQFAKVFLPAFFTVAFVTGLAGNSVVVAIYAYYKKQRTKTDV 78
Query: 344 YLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRY 523
Y+LNLAVAD+L L+TLPFWA +A W+ G +CK+ +Y ++F SGM L CISIDRY
Sbjct: 79 YILNLAVADLLLLITLPFWAVNAVHGWILGKMMCKVTSALYTVNFVSGMQFLACISIDRY 138
Query: 524 VAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITE 703
AI +A S +I C +WM A++LS P+L++ + Q RC+ I
Sbjct: 139 WAITKAPSQSGAGRPCWII----CCCVWMAAILLSIPQLVF-----YTVNQNARCTPIFP 189
Query: 704 H---VEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNKAHXXXXXXXXXX 874
H +IQ+ ++ +GF++P + M CY R L++ N ++++
Sbjct: 190 HHLGTSLKASIQMLEIGIGFVVPFLIMGVCYASTARALIKMPNIKKSRPLRVLLAVVVVF 249
Query: 875 XXXXLPYNGVVLAQTV 922
LPYN V Q +
Sbjct: 250 IVTQLPYNVVKFCQAI 265
>gi|6753460|ref|NP_034041.1| (NM_009911) chemokine (C-X-C motif)
receptor 4; chemokine (C-X-C) receptor 4;
leukocyte-expressed seven-transmembrane-domain [Mus
musculus]
Length = 359
Score = 164 bits (415), Expect = 6e-41
Identities = 87/254 (34%), Positives = 142/254 (55%), Gaps = 3/254 (1%)
Frame = +2
Query: 143 TDDYIGDNTTVDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYFKR 322
+D+Y + + DY + CF+ + F FLP +Y II G++GNGLV+L Y K+
Sbjct: 11 SDNYSEEVGSGDYDSNKEPCFRDENVHFNRIFLPTIYFIIFLTGIVGNGLVILVMGYQKK 70
Query: 323 LKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGMLLLL 502
L++MTD Y L+L+VAD+LF++TLPFWA A W FG +CK + IY ++ +S +L+L
Sbjct: 71 LRSMTDKYRLHLSVADLLFVITLPFWAVDAMADWYFGKFLCKAVHIIYTVNLYSSVLILA 130
Query: 503 CISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQK---SSSE 673
IS+DRY+AIV A ++ R R LL K VG+W+ A++L+ P+ +++ + S +
Sbjct: 131 FISLDRYLAIVHATNS--QRPRKLLAEKAVYVGVWIPALLLTIPDFIFADVSQGDISQGD 188
Query: 674 QALRCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNKAHXXX 853
C + ++ Q ++VG ++P + + CY +II L ++ ++ KA
Sbjct: 189 DRYICDRLYPDSLWMVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGHQKRKALKTT 248
Query: 854 XXXXXXXXXXXLPY 895
LPY
Sbjct: 249 VILILAFFACWLPY 262
>gi|31542356|ref|NP_034047.2| (NM_009917) chemokine (C-C motif)
receptor 5; chemokine (C-C) receptor 5 [Mus musculus]
Length = 354
Score = 162 bits (409), Expect = 3e-40
Identities = 97/268 (36%), Positives = 148/268 (55%), Gaps = 7/268 (2%)
Frame = +2
Query: 149 DYIGDNTTVDYTL---YESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYFK 319
D+ G T Y + + C K +V+ A LP +YS++ G +GN +V L I K
Sbjct: 2 DFQGSVPTYSYDIDYGMSAPCQKINVKQIAAQLLPPLYSLVFIFGFVGNMMVFLILISCK 61
Query: 320 RLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGMLLL 499
+LK++TD YLLNLA++D+LFLLTLPFWA+ AA WVFG +CK+ G+Y I +F G+ +
Sbjct: 62 KLKSVTDIYLLNLAISDLLFLLTLPFWAHYAANEWVFGNIMCKVFTGLYHIGYFGGIFFI 121
Query: 500 LCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSEQA 679
+ ++IDRY+AIV AV A + R + ++ V W +A+ S PE++++ +QK
Sbjct: 122 ILLTIDRYLAIVHAVFA--LKVRTVNFGVITSVVTWAVAVFASLPEIIFTRSQKEGFHYT 179
Query: 680 LRCSLITEHVEALI--TIQVAQMVV-GFLIPLVAMSFCYLVIIRTLLQARN-FERNKAHX 847
CS H + + Q +MV+ ++PL+ M CY I+ TL + RN +R++A
Sbjct: 180 --CSPHFPHTQYHFWKSFQTLKMVILSLILPLLVMVICYSGILHTLFRCRNEKKRHRAVR 237
Query: 848 XXXXXXXXXXXXXLPYNGVVLAQTVANF 931
PYN V+L T F
Sbjct: 238 LIFAIMIVYFLFWTPYNIVLLLTTFQEF 265
>gi|6753466|ref|NP_034045.1| (NM_009915) chemokine (C-C) receptor 2;
MIP-1 alphaR; chemoattractant protein-1 receptor [Mus
musculus]
Length = 373
Score = 161 bits (408), Expect = 4e-40
Identities = 95/256 (37%), Positives = 144/256 (56%), Gaps = 2/256 (0%)
Frame = +2
Query: 158 GDNTTVDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMT 337
G T DY E C K V+ AW LP +YS++ G +GN LV++ I K+LK+MT
Sbjct: 32 GATTPYDYDDGEP-CHKTSVKQIGAWILPPLYSLVFIFGFVGNMLVIIILIGCKKLKSMT 90
Query: 338 DTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGMLLLLCISID 517
D YLLNLA++D+LFLLTLPFWA+ AA WVFG +CK+ G+Y I +F G+ ++ ++ID
Sbjct: 91 DIYLLNLAISDLLFLLTLPFWAHYAANEWVFGNIMCKVFTGLYHIGYFGGIFFIILLTID 150
Query: 518 RYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSEQALRCS-L 694
RY+AIV AV A +AR + ++ V W++A+ S P +++ T+ + C
Sbjct: 151 RYLAIVHAVFA--LKARTVTFGVITSVVTWVVAVFASLPGIIF--TKSKQDDHHYTCGPY 206
Query: 695 ITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARN-FERNKAHXXXXXXXXX 871
T+ + TI + ++ ++PL+ M CY I+ TL + RN +R++A
Sbjct: 207 FTQLWKNFQTIM--RNILSLILPLLVMVICYSGILHTLFRCRNEKKRHRAVRLIFAIMIV 264
Query: 872 XXXXXLPYNGVVLAQT 919
PYN V+ T
Sbjct: 265 YFLFWTPYNIVLFLTT 280
>gi|6753458|ref|NP_034040.1| (NM_009910) chemokine (C-X-C motif)
receptor 3; chemokine (C-X-C) receptor 3 [Mus musculus]
Length = 367
Score = 161 bits (408), Expect = 4e-40
Identities = 86/238 (36%), Positives = 130/238 (54%)
Frame = +2
Query: 224 FKAWFLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWA 403
F FLP +YS++ +GLLGNG V + + + TDT+LL+LAVAD+L +LTLP WA
Sbjct: 50 FDRTFLPALYSLLFLLGLLGNGAVAAVLLSQRTALSSTDTFLLHLAVADVLLVLTLPLWA 109
Query: 404 YSAAKSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLIS 583
AA WVFG +CK+ ++ I+F++G LL CIS DRY++IV A +R RV +
Sbjct: 110 VDAAVQWVFGPGLCKVAGALFNINFYAGAFLLACISFDRYLSIVHATQIYRRDPRVRV-- 167
Query: 584 KLSCVGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITEHVEALITIQVAQMVVGFLIP 763
L+C+ +W L ++ + P+ +Y A C V ++V Q+V GFL+P
Sbjct: 168 ALTCIVVWGLCLLFALPDFIYLSANYDQRLNATHCQYNFPQV-GRTALRVLQLVAGFLLP 226
Query: 764 LVAMSFCYLVIIRTLLQARNFERNKAHXXXXXXXXXXXXXXLPYNGVVLAQTVANFNI 937
L+ M++CY I+ LL +R R +A PY+ VVL + + +
Sbjct: 227 LLVMAYCYAHILAVLLVSRGQRRFRAMRLVVVVVAAFAVCWTPYHLVVLVDILMDVGV 284
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 7,155,815
Number of sequences in database: 15,330
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9864578
Number of Sequences: 15330
Number of extensions: 190881
Number of successful extensions: 1499
Number of sequences better than 10.0: 391
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of query: 318
length of database: 7,155,815
effective HSP length: 47
effective length of query: 270
effective length of database: 6,435,305
effective search space: 1737532350
effective search space used: 1737532350
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)