Search to RefSeq (Human) database
Query= 20030531S-007138 (20030531S-007138) 20030531S-007138
(749 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,244 sequences; 10,046,356 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|27597085|ref|NP_000357.3| (NM_000366) tropomyosin 1 (alpha) ... 189 2e-48
Alignment gi|4507649|ref|NP_003280.1| (NM_003289) tropomyosin 2 (beta) [H... 182 3e-46
Alignment gi|22748619|ref|NP_689476.1| (NM_152263) tropomyosin 3 [Homo sa... 113 2e-25
Alignment gi|4507651|ref|NP_003281.1| (NM_003290) tropomyosin 4 [Homo sap... 78 6e-15
Alignment gi|24119203|ref|NP_705935.1| (NM_153649) tropomyosin 3 [Homo sa... 70 1e-12
Alignment gi|21735548|ref|NP_009117.2| (NM_007186) centrosomal protein 2;... 53 3e-07
Alignment gi|4503469|ref|NP_003557.1| (NM_003566) early endosome antigen ... 47 2e-05
Alignment gi|7669506|ref|NP_005954.2| (NM_005963) myosin, heavy polypepti... 45 4e-05
Alignment gi|6005904|ref|NP_009045.1| (NM_007114) TATA element modulatory... 45 4e-05
Alignment gi|24431997|ref|NP_078857.2| (NM_024581) chromosome 6 open read... 45 4e-05
>gi|27597085|ref|NP_000357.3| (NM_000366) tropomyosin 1 (alpha)
[Homo sapiens]
Length = 284
Score = 189 bits (479), Expect = 2e-48
Identities = 103/160 (64%), Positives = 119/160 (74%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 247
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 248 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 427
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 428 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 547
M +E EEK+ A +A+R
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Score = 47.4 bits (111), Expect = 1e-05
Identities = 27/98 (27%), Positives = 53/98 (53%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 250
E + +K+ +++ D E A +RAE +E + EE+ + +++ L L + D+Y
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYE 222
Query: 251 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 364
+ +K +KL+ ++ +A AE V L + I +E+EL
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>gi|4507649|ref|NP_003280.1| (NM_003289) tropomyosin 2 (beta) [Homo
sapiens]
Length = 284
Score = 182 bits (461), Expect = 3e-46
Identities = 96/141 (68%), Positives = 113/141 (80%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 247
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 248 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 427
+++K+AQEKLE ++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 428 XXXXXXMNGMEKAGH*KEEKI 490
M +E EEK+
Sbjct: 121 DESERGMKVIENRAMKDEEKM 141
Score = 54.7 bits (130), Expect = 7e-08
Identities = 33/103 (32%), Positives = 59/103 (57%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 250
E + +K+ +L+ + E + +RAE AES + EE+ + +++ L L + + DKY
Sbjct: 163 EEVARKLVILEGELERSEERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYE 222
Query: 251 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 379
+ +K +EKL+ ++ +A AE VA L + I +EE L A+E
Sbjct: 223 EEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEETLASAKE 265
>gi|22748619|ref|NP_689476.1| (NM_152263) tropomyosin 3 [Homo
sapiens]
Length = 243
Score = 113 bits (282), Expect = 2e-25
Identities = 59/109 (54%), Positives = 81/109 (74%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 247
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELD+
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDRA 61
Query: 248 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 394
+ L A +KLE ++K A ++E + + R EE+++ + +L A
Sbjct: 62 QERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEA 110
Score = 53.9 bits (128), Expect = 1e-07
Identities = 32/98 (32%), Positives = 54/98 (54%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 250
E + +K+ +++ D E +RAE AES EE+ K V L L+ + + + DKY
Sbjct: 122 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 181
Query: 251 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 364
+ +K +KL+ ++ +A AE VA L + I +E+EL
Sbjct: 182 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDEL 219
>gi|4507651|ref|NP_003281.1| (NM_003290) tropomyosin 4 [Homo
sapiens]
Length = 248
Score = 78.2 bits (191), Expect = 6e-15
Identities = 47/118 (39%), Positives = 64/118 (53%)
Frame = +2
Query: 194 LTHLQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRA 373
L +++K++ + + D+ + Q +L+ +++ AEGDVAALNRRIQLVEEELDRA
Sbjct: 7 LEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRA 66
Query: 374 QERLATALQKLXXXXXXXXXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 547
QERLATALQKL M +E EEK+ A EA+R
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADR 124
Score = 58.2 bits (139), Expect = 6e-09
Identities = 30/110 (27%), Positives = 64/110 (57%)
Frame = +2
Query: 65 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDK 244
++EA+K+K+Q L+ + A DRA+ + + E+ ++ E ++ L ++++ E+ELD+
Sbjct: 6 SLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDR 65
Query: 245 YFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 394
+ L A +KLE ++K A ++E + + R EE+++ + +L A
Sbjct: 66 AQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEA 115
Score = 52.4 bits (124), Expect = 4e-07
Identities = 36/110 (32%), Positives = 61/110 (54%), Gaps = 7/110 (6%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTE------- 229
E + +K+ +L+ + E A +RAE +E KC +EEEL ++ LK E
Sbjct: 127 EEVARKLVILEGELERAEERAE-------VSELKCGDLEEELKNVTNNLKSLEAASEKYS 179
Query: 230 DELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 379
++ DKY + +K +KL+ ++ +A AE VA L + I +EE+L +A+E
Sbjct: 180 EKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 229
Score = 33.5 bits (75), Expect = 0.17
Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Frame = +2
Query: 80 KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTE-------DEL 238
++KM++ ++ + A AE+A+ + K +E EL +++ + +E +EL
Sbjct: 102 EEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEEL 161
Query: 239 DKYFQNLKDA--------------QEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQ 376
NLK +E+++L K +AE R + +E+ +D +
Sbjct: 162 KNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLE 221
Query: 377 ERLATALQK 403
E+LA A ++
Sbjct: 222 EKLAQAKEE 230
Score = 32.3 bits (72), Expect = 0.38
Identities = 27/129 (20%), Positives = 55/129 (41%), Gaps = 7/129 (5%)
Frame = +2
Query: 125 DRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYFQNLKDAQEKLELSKKKAS 304
++ E E K A+ ++ + + + +KL E EL++ A+E+ E+S+ K
Sbjct: 103 EKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELER-------AEERAEVSELKCG 155
Query: 305 DAEGDVAALNRRIQLVE-------EELDRAQERLATALQKLXXXXXXXXXXXXXMNGMEK 463
D E ++ + ++ +E E+ D+ +E + KL + +EK
Sbjct: 156 DLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEK 215
Query: 464 AGH*KEEKI 490
EEK+
Sbjct: 216 TIDDLEEKL 224
>gi|24119203|ref|NP_705935.1| (NM_153649) tropomyosin 3 [Homo
sapiens]
Length = 248
Score = 70.5 bits (171), Expect = 1e-12
Identities = 43/115 (37%), Positives = 61/115 (52%)
Frame = +2
Query: 203 LQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQER 382
+++K++ + + D + + Q ++E ++ AE +VA+LNRRIQLVEEELDRAQER
Sbjct: 10 VKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQER 69
Query: 383 LATALQKLXXXXXXXXXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 547
LATALQKL M +E EEK+ A EA+R
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 124
Score = 59.7 bits (143), Expect = 2e-09
Identities = 31/109 (28%), Positives = 65/109 (59%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 247
+EA+K+K+Q+L+ ++A +RAE+ + + + +Q E E+ L ++++ E+ELD+
Sbjct: 7 IEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRA 66
Query: 248 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 394
+ L A +KLE ++K A ++E + + R EE+++ + +L A
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEA 115
Score = 48.1 bits (113), Expect = 7e-06
Identities = 29/103 (28%), Positives = 57/103 (55%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 250
E + +K+ +++ D E +RAE AES + +E+ + +++ L L + + DKY
Sbjct: 127 EEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYE 186
Query: 251 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQE 379
+ +K +KL+ ++ +A AE VA L + I +E++L +E
Sbjct: 187 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKE 229
>gi|21735548|ref|NP_009117.2| (NM_007186) centrosomal protein 2;
centrosome associated protein; centrosomal
Nek2-associated protein 1 [Homo sapiens]
Length = 2442
Score = 52.8 bits (125), Expect = 3e-07
Identities = 35/122 (28%), Positives = 69/122 (55%), Gaps = 9/122 (7%)
Frame = +2
Query: 65 AMEAIKKKMQMLKLDKENA-----IDRAEQAES----DKKAAEEKCKQVEEELTHLQKKL 217
A++ + Q+L+L++EN ++ AEQA + D AE++ + + E+ THL+ +L
Sbjct: 609 ALDKVGLNQQLLQLEEENQSVCSRMEAAEQARNALQVDLAEAEKRREALWEKNTHLEAQL 668
Query: 218 KGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATAL 397
+ E+ + +L+D QE+ E +KK S++ A +++ + +E R +E LA A+
Sbjct: 669 QKAEEAGAELQADLRDIQEEKEEIQKKLSESRHQQEAATTQLEQLHQEAKRQEEVLARAV 728
Query: 398 QK 403
Q+
Sbjct: 729 QE 730
Score = 37.0 bits (84), Expect = 0.015
Identities = 22/105 (20%), Positives = 54/105 (50%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 250
EA+ +K L+ + A + + ++D + +E+ ++++++L+ + + + +L++
Sbjct: 655 EALWEKNTHLEAQLQKAEEAGAELQADLRDIQEEKEEIQKKLSESRHQQEAATTQLEQLH 714
Query: 251 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERL 385
Q K +E L + ++ + AAL R+Q VE + E+L
Sbjct: 715 QEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAEQL 759
>gi|4503469|ref|NP_003557.1| (NM_003566) early endosome antigen 1,
162kD; early endosome-associated protein [Homo sapiens]
Length = 1410
Score = 46.6 bits (109), Expect = 2e-05
Identities = 37/114 (32%), Positives = 65/114 (56%), Gaps = 5/114 (4%)
Frame = +2
Query: 59 CPAMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDEL 238
C A++ I+K+ + +KE ++++ AE + E KC+Q E+E+T L ++LK + E
Sbjct: 1102 CKALQDIQKEKSLK--EKELVNEKSKLAEIE----EIKCRQ-EKEITKLNEELKSHKLES 1154
Query: 239 DKYFQNLKDA-----QEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERL 385
K NLKDA Q+KLEL + KA + V R Q++++++ + +E L
Sbjct: 1155 IKEITNLKDAKQLLIQQKLEL-QGKADSLKAAVEQEKRNQQILKDQVKKEEEEL 1207
Score = 35.8 bits (81), Expect = 0.034
Identities = 22/103 (21%), Positives = 49/103 (47%)
Frame = +2
Query: 98 LKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYFQNLKDAQEK 277
+K KE A+ +Q E + ++ ++L ++ + T +L K + L+ ++K
Sbjct: 742 VKASKEQALQDLQQQRQLNTDLELRATELSKQLEMEKEIVSSTRLDLQKKSEALESIKQK 801
Query: 278 LELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL 406
L +++ + D L++ ++ EEL+ + T LQK+
Sbjct: 802 LTKQEEEKQILKQDFETLSQETKIQHEELNNRIQTTVTELQKV 844
Score = 34.7 bits (78), Expect = 0.076
Identities = 19/102 (18%), Positives = 51/102 (49%), Gaps = 1/102 (0%)
Frame = +2
Query: 104 LDKENAIDRAE-QAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYFQNLKDAQEKL 280
L+ E + A + + ++ + EK E+++ LQ KL E++L + N + Q +L
Sbjct: 424 LETERQLGEAHGRLKEQRQLSSEKLMDKEQQVADLQLKLSRLEEQLKEKVTNSTELQHQL 483
Query: 281 ELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL 406
+ +K++ + + + +++ + +L++ ++ QK+
Sbjct: 484 DKTKQQHQEQQALQQSTTAKLREAQNDLEQVLRQIGEKDQKI 525
Score = 33.1 bits (74), Expect = 0.22
Identities = 24/102 (23%), Positives = 49/102 (47%)
Frame = +2
Query: 80 KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYFQNL 259
+KK Q+ L E I ++ E + K ++++LT ++L ++++ N
Sbjct: 970 QKKKQIEALQGELKIAVLQKTELENK--------LQQQLTQAAQELAAEKEKISVLQNNY 1021
Query: 260 KDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERL 385
+ +QE + + E ++ A + ++ VEE+L AQE L
Sbjct: 1022 EKSQETFKQLQSDFYGRESELLATRQDLKSVEEKLSLAQEDL 1063
Score = 31.6 bits (70), Expect = 0.64
Identities = 19/110 (17%), Positives = 55/110 (49%), Gaps = 3/110 (2%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAA---EEKCKQVEEELTHLQKKLKGTEDEL 238
++ K+ + +L+ ++E+ + + E + +EK +++E+T L + +K +
Sbjct: 532 LQKSKENISLLEKEREDLYAKIQAGEGETAVLNQLQEKNHTLQDEVTQLTENVKNQSESH 591
Query: 239 DKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLA 388
+ +NL D ++ + + A D V +L + + +L+ ++E+++
Sbjct: 592 KQAQENLHDQVQEQKAHLRAAQDR---VLSLETSVNELNSQLNESKEKVS 638
Score = 30.0 bits (66), Expect = 1.9
Identities = 26/111 (23%), Positives = 49/111 (43%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 250
EA + + +L E +D+ +Q + K ++EE+L + +LDK
Sbjct: 432 EAHGRLKEQRQLSSEKLMDKEQQVAD----LQLKLSRLEEQLKEKVTNSTELQHQLDKTK 487
Query: 251 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQK 403
Q ++ Q + + K +A+ D+ + R+I E D+ + L LQK
Sbjct: 488 QQHQEQQALQQSTTAKLREAQNDLEQVLRQI----GEKDQKIQNLEALLQK 534
>gi|7669506|ref|NP_005954.2| (NM_005963) myosin, heavy polypeptide 1,
skeletal muscle, adult; myosin heavy chain IIx/d [Homo
sapiens]
Length = 1939
Score = 45.4 bits (106), Expect = 4e-05
Identities = 32/110 (29%), Positives = 63/110 (57%), Gaps = 8/110 (7%)
Frame = +2
Query: 68 MEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTED---E 235
+E K+K++ LKL +E+A+D E+DK+ +EK K+ E E++ LQ K++ + +
Sbjct: 1052 LERAKRKLEGDLKLAQESAMD----IENDKQQLDEKLKKKEFEMSGLQSKIEDEQALGMQ 1107
Query: 236 LDKYFQNL----KDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRA 373
L K + L ++ +E++E + + AE + L+R ++ + E L+ A
Sbjct: 1108 LQKKIKELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEA 1157
Score = 40.0 bits (92), Expect = 0.002
Identities = 27/111 (24%), Positives = 59/111 (52%), Gaps = 1/111 (0%)
Frame = +2
Query: 77 IKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYFQN 256
I+ +M+ + + NA ++A++A +D E+ K+ ++ HL++ K E Q
Sbjct: 1741 IQGEMEDIIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLE-------QT 1793
Query: 257 LKDAQEKLELSKKKA-SDAEGDVAALNRRIQLVEEELDRAQERLATALQKL 406
+KD Q +L+ +++ A + + L R++ +E E++ Q+R A++ L
Sbjct: 1794 VKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVESEQKRNVEAVKGL 1844
Score = 38.1 bits (87), Expect = 0.007
Identities = 29/110 (26%), Positives = 52/110 (46%), Gaps = 1/110 (0%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 247
+E ++ + +++D E A + E D K A+E +E + L +KLK E E+
Sbjct: 1038 LEGSLEQEKKIRMDLERA---KRKLEGDLKLAQESAMDIENDKQQLDEKLKKKEFEMSGL 1094
Query: 248 FQNLKDAQEK-LELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATA 394
++D Q ++L KK + L RI+ +EEE++ + A A
Sbjct: 1095 QSKIEDEQALGMQLQKK--------IKELQARIEELEEEIEAERASRAKA 1136
Score = 33.5 bits (75), Expect = 0.17
Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Frame = +2
Query: 77 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVEEELTHLQKKLKGTEDELDKYFQ 253
+++KM L +K N + QAE+D A AEE+C Q+ + L+ K+K + + +
Sbjct: 877 LEEKMVTLMQEK-NDLQLQVQAEADSLADAEERCDQLIKTKIQLEAKIKEVTERAEDEEE 935
Query: 254 NLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL 406
+ K + + S+ + D+ L + VE+E + ++ +++
Sbjct: 936 INAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEM 986
Score = 32.0 bits (71), Expect = 0.49
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Frame = +2
Query: 134 EQAESDKKAA--EEKCKQVEEELTHLQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASD 307
+ AE++K+ A +E+ ++ +EEL + K K E+++ Q D Q +++ +D
Sbjct: 845 KSAETEKEMANMKEEFEKTKEELAKTEAKRKELEEKMVTLMQEKNDLQLQVQAEADSLAD 904
Query: 308 AEGDVAAL-NRRIQL---VEEELDRAQE 379
AE L +IQL ++E +RA++
Sbjct: 905 AEERCDQLIKTKIQLEAKIKEVTERAED 932
Score = 30.0 bits (66), Expect = 1.9
Identities = 22/96 (22%), Positives = 46/96 (47%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 250
+ IK K+Q+ KE +RAE E K +++E+E + L+K + E L K
Sbjct: 911 QLIKTKIQLEAKIKE-VTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVE 969
Query: 251 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEE 358
+ + K++ ++ + + +A L + + ++E
Sbjct: 970 KEKHATENKVKNLTEEMAGLDETIAKLTKEKKALQE 1005
Score = 29.3 bits (64), Expect = 3.2
Identities = 24/101 (23%), Positives = 52/101 (50%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 247
+E +K++ + L+ + + ++ + E+ KQVE+E + LQ L+ E L+
Sbjct: 1499 LETLKRENKNLQQEISDLTEQIAEGGKRIHELEKIKKQVEQEKSELQAALEEAEASLE-- 1556
Query: 248 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDR 370
+ K + +LEL++ K+ ++R+I +EE+D+
Sbjct: 1557 HEEGKILRIQLELNQVKSE--------VDRKIAEKDEEIDQ 1589
>gi|6005904|ref|NP_009045.1| (NM_007114) TATA element modulatory
factor 1 [Homo sapiens]
Length = 1093
Score = 45.4 bits (106), Expect = 4e-05
Identities = 29/105 (27%), Positives = 55/105 (51%), Gaps = 4/105 (3%)
Frame = +2
Query: 83 KKMQMLKLDKENAID--RAEQAESDKKAAE--EKCKQVEEELTHLQKKLKGTEDELDKYF 250
+K+ +L N I RA+ E++ A+ +K K++EEEL HL++ L G E+ ++
Sbjct: 563 EKLSKQQLHNSNIIKKLRAKDKENENMVAKLNKKVKELEEELQHLKQVLDGKEEVEKQHR 622
Query: 251 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERL 385
+N+K +E +K + D+ L + + ++ LD A + L
Sbjct: 623 ENIKKLNSMVERQEKDLGRLQVDMDELEEKNRSIQAALDSAYKEL 667
Score = 36.2 bits (82), Expect = 0.026
Identities = 33/129 (25%), Positives = 61/129 (46%), Gaps = 23/129 (17%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAES-------DKKAAEEKCKQVEEELTHLQKKLKGT 226
M +K++ + K+ R +AE ++ AA+++ K ++EEL +L +
Sbjct: 486 MFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEIKNIKEELA---TRLNSS 542
Query: 227 ED-----ELDKYFQNLKDAQEKLE---------LSKKKASDAEGD--VAALNRRIQLVEE 358
E E D+ + L + EKL + K +A D E + VA LN++++ +EE
Sbjct: 543 ETADLLKEKDEQIRGLMEEGEKLSKQQLHNSNIIKKLRAKDKENENMVAKLNKKVKELEE 602
Query: 359 ELDRAQERL 385
EL ++ L
Sbjct: 603 ELQHLKQVL 611
>gi|24431997|ref|NP_078857.2| (NM_024581) chromosome 6 open reading
frame 60 [Homo sapiens]
Length = 936
Score = 45.4 bits (106), Expect = 4e-05
Identities = 36/117 (30%), Positives = 59/117 (49%), Gaps = 7/117 (5%)
Frame = +2
Query: 56 HCPAMEAI-------KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKK 214
H A+EA+ KKK+QM D EQ DK EE Q+++EL +L++
Sbjct: 370 HHMAIEAVHSNAIRDKKKLQM---------DLEEQHNKDKLNLEEDKNQLQQELENLKEV 420
Query: 215 LKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERL 385
L ED+L+ Q + Q+ + S++ AEG +A+L + ++ ELD ++ L
Sbjct: 421 L---EDKLNTANQEIGHLQDMVRKSEQGLGSAEGLIASLQDSQERLQNELDLTKDSL 474
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 10,046,356
Number of sequences in database: 19,244
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12403816
Number of Sequences: 19244
Number of extensions: 296527
Number of successful extensions: 2486
Number of sequences better than 10.0: 317
Number of HSP's better than 10.0 without gapping: 1756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2349
length of query: 249
length of database: 10,046,356
effective HSP length: 47
effective length of query: 202
effective length of database: 9,141,888
effective search space: 1846661376
effective search space used: 1846661376
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search to RefSeq (Mouse) database
Query= 20030531S-007138 (20030531S-007138) 20030531S-007138
(749 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
15,330 sequences; 7,155,815 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|31560030|ref|NP_077745.2| (NM_024427) tropomyosin 1, alpha; ... 189 2e-48
Alignment gi|11875203|ref|NP_033442.2| (NM_009416) tropomyosin 2, beta [M... 183 7e-47
Alignment gi|13928666|ref|NP_071709.1| (NM_022314) tropomyosin 3, gamma; ... 182 2e-46
Alignment gi|31981983|ref|NP_033313.2| (NM_009287) stromal interaction mo... 42 3e-04
Alignment gi|6754774|ref|NP_034986.1| (NM_010856) myosin, heavy polypepti... 41 6e-04
Alignment gi|18859641|ref|NP_542766.1| (NM_080728) myosin, heavy polypept... 40 0.001
Alignment gi|30424776|ref|NP_780381.1| (NM_175172) RIKEN cDNA 4930506M07 ... 40 0.002
Alignment gi|25072201|ref|NP_739563.1| (NM_170757) oocyte-testis gene 1 [... 40 0.002
Alignment gi|9507021|ref|NP_062273.1| (NM_019400) rabaptin 5; neurocresci... 40 0.002
Alignment gi|16716511|ref|NP_444434.1| (NM_053204) Rab6-interacting prote... 39 0.002
>gi|31560030|ref|NP_077745.2| (NM_024427) tropomyosin 1, alpha;
alpha tropomyosin [Mus musculus]
Length = 284
Score = 189 bits (479), Expect = 2e-48
Identities = 103/160 (64%), Positives = 119/160 (74%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 247
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 248 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 427
+ LKDAQEKLEL++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 428 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 547
M +E EEK+ A +A+R
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Score = 54.7 bits (130), Expect = 5e-08
Identities = 31/111 (27%), Positives = 59/111 (52%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 250
E + +K+ +++ D E A +RAE +E KC ++EEEL + LK E + +KY
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEG-------KCAELEEELKTVTNNLKSLEAQAEKYS 215
Query: 251 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQK 403
Q +E++++ K +AE R + +E+ +D +E++A A ++
Sbjct: 216 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEE 266
>gi|11875203|ref|NP_033442.2| (NM_009416) tropomyosin 2, beta [Mus
musculus]
Length = 284
Score = 183 bits (465), Expect = 7e-47
Identities = 97/141 (68%), Positives = 113/141 (79%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 247
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 248 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 427
+++KDAQEKLE ++KKA+DAE DVA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 428 XXXXXXMNGMEKAGH*KEEKI 490
M +E EEK+
Sbjct: 121 DESERGMKVIENRAMKDEEKM 141
Score = 50.8 bits (120), Expect = 7e-07
Identities = 32/98 (32%), Positives = 55/98 (55%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 250
E + +K+ +L+ + E + +RAE AES EE+ K V L L+ + + DKY
Sbjct: 163 EEVARKLVILEGELERSEERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYE 222
Query: 251 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 364
+ +K +EKL+ ++ +A AE VA L + I +E+E+
Sbjct: 223 EEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEV 260
>gi|13928666|ref|NP_071709.1| (NM_022314) tropomyosin 3, gamma;
skalphaTM.2; tropomyosin 5 [Mus musculus]
Length = 284
Score = 182 bits (461), Expect = 2e-46
Identities = 100/160 (62%), Positives = 117/160 (72%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 247
MEAIKKKMQMLKLDKEN +DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKY 60
Query: 248 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLXXXXXXX 427
+ LKDAQEKLEL++KKA+DAE +VA+LNRRIQLVEEELDRAQERLATALQKL
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 428 XXXXXXMNGMEKAGH*KEEKIGXXXXXXXXXXXXAMEANR 547
M +E EEK+ A EA+R
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 160
Score = 53.9 bits (128), Expect = 9e-08
Identities = 32/98 (32%), Positives = 54/98 (54%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYF 250
E + +K+ +++ D E +RAE AES EE+ K V L L+ + + + DKY
Sbjct: 163 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 251 QNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 364
+ +K +KL+ ++ +A AE VA L + I +E+EL
Sbjct: 223 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDEL 260
Score = 27.3 bits (59), Expect = 8.5
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +2
Query: 80 KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELD 241
++++++L + A RAE AE E+ +E+EL + K K DELD
Sbjct: 222 EEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISDELD 275
>gi|31981983|ref|NP_033313.2| (NM_009287) stromal interaction
molecule 1 [Mus musculus]
Length = 685
Score = 42.4 bits (98), Expect = 3e-04
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Frame = +2
Query: 80 KKKMQMLKLDKENAIDRAEQAESDKKA----AEEKCKQVEEELTHLQKKLKGTEDELDKY 247
K+ M+ + D E + RAEQ+ D + A+E+ + VE E HL+KKL+ + +
Sbjct: 238 KEHMKKMMKDLEG-LHRAEQSLHDLQERLHKAQEEHRTVEVEKVHLEKKLRDEINLAKQE 296
Query: 248 FQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLA-TALQK 403
Q LK+ +E E + + AE ++ + ++ E+EL+ A ALQK
Sbjct: 297 AQRLKELREGTENERSRQKYAEEELEQVREALRKAEKELESHSSWYAPEALQK 349
>gi|6754774|ref|NP_034986.1| (NM_010856) myosin, heavy polypeptide 6,
cardiac muscle, alpha; myosin heavy chain, cardiac
muscle, adult; alpha myosin; alpha cardiac MHC;
cardiomyopathy, hypertrophic 1 [Mus musculus]
Length = 1938
Score = 41.2 bits (95), Expect = 6e-04
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 26/131 (19%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQ-----AESDKKAAEEKCKQVEEELTHLQKK----LK 220
+E +KK M+ D ++ +D AEQ + + E + +++E EL QK+ +K
Sbjct: 1781 LERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQKLEARVRELENELEAEQKRNAESVK 1840
Query: 221 GTE-------------DELDKYFQNLKDAQEKLELS----KKKASDAEGDVAALNRRIQL 349
G +E K L+D +KL+L K++A +AE + +
Sbjct: 1841 GMRKSERRIKELTYQTEEDKKNLMRLQDLVDKLQLKVKAYKRQAEEAEEQANTNLSKFRK 1900
Query: 350 VEEELDRAQER 382
V+ ELD A+ER
Sbjct: 1901 VQHELDEAEER 1911
Score = 38.5 bits (88), Expect = 0.004
Identities = 25/96 (26%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Frame = +2
Query: 116 NAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYFQNLKDAQEKLELSKK 295
NA ++A++A +D E+ K+ ++ HL++ K E Q +KD Q +L+ +++
Sbjct: 1752 NAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNME-------QTIKDLQHRLDEAEQ 1804
Query: 296 KA-SDAEGDVAALNRRIQLVEEELDRAQERLATALQ 400
A + + L R++ +E EL+ Q+R A +++
Sbjct: 1805 IALKGGKKQLQKLEARVRELENELEAEQKRNAESVK 1840
Score = 35.4 bits (80), Expect = 0.031
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Frame = +2
Query: 68 MEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTH-------------- 202
+E K+K++ LKL +E+ +D E+DK EEK K+ E +++
Sbjct: 1050 LERAKRKLEGDLKLTQESIMD----LENDKLQLEEKLKKKEFDISQQNSKIEDEQALALQ 1105
Query: 203 LQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRA 373
LQKKLK + +++ +E+LE + + E + L+R ++ + E L+ A
Sbjct: 1106 LQKKLKENQ-------ARIEELEEELEAERTARAKVEKLRSDLSRELEEISERLEEA 1155
Score = 34.3 bits (77), Expect = 0.070
Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Frame = +2
Query: 77 IKKKMQMLKLDKENAIDRAEQAESDK-KAAEEKCKQVEEELTHLQKKLKGTEDELDKYFQ 253
+++KM L L ++N + QAE D AEE+C Q+ + L+ K+K + L+ +
Sbjct: 875 LEEKMVSL-LQEKNDLQLQVQAEQDNLNDAEERCDQLIKNKIQLEAKVKEMTERLEDEEE 933
Query: 254 NLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL 406
+ K + + S+ + D+ L + VE+E + ++ +++
Sbjct: 934 MNAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEM 984
Score = 31.6 bits (70), Expect = 0.45
Identities = 30/97 (30%), Positives = 48/97 (48%), Gaps = 2/97 (2%)
Frame = +2
Query: 101 KLDKEN-AIDRA-EQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYFQNLKDAQE 274
KL KE A+ A +QA D +A E+K LT + KL+ D+L+ + K +
Sbjct: 993 KLTKEKKALQEAHQQALDDLQAEEDKVNT----LTKSKVKLEQQVDDLEGSLEQEKKVRM 1048
Query: 275 KLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERL 385
LE +K+K EGD+ I +E + + +E+L
Sbjct: 1049 DLERAKRK---LEGDLKLTQESIMDLENDKLQLEEKL 1082
Score = 28.1 bits (61), Expect = 5.0
Identities = 20/86 (23%), Positives = 43/86 (49%), Gaps = 2/86 (2%)
Frame = +2
Query: 134 EQAESDKKAA--EEKCKQVEEELTHLQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASD 307
+ AE++K+ A +E+ +V++ L + + K E+++ Q D Q +++ + +D
Sbjct: 843 KSAETEKEMANMKEEFGRVKDALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLND 902
Query: 308 AEGDVAALNRRIQLVEEELDRAQERL 385
AE L + +E ++ ERL
Sbjct: 903 AEERCDQLIKNKIQLEAKVKEMTERL 928
>gi|18859641|ref|NP_542766.1| (NM_080728) myosin, heavy polypeptide 7,
cardiac muscle, beta; myosin heavy chain, cardiac muscle,
fetal [Mus musculus]
Length = 1935
Score = 40.0 bits (92), Expect = 0.001
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 26/131 (19%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQ-----AESDKKAAEEKCKQVEEELTHLQKK----LK 220
+E +KK M+ D ++ +D AEQ + + E + +++E EL QK+ +K
Sbjct: 1779 LERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQKLEARVRELENELEAEQKRNAESVK 1838
Query: 221 GTE-------------DELDKYFQNLKDAQEKLELS----KKKASDAEGDVAALNRRIQL 349
G +E K L+D +KL+L K++A +AE + +
Sbjct: 1839 GMRKSERRIKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQAEEAEEQANTNLSKFRK 1898
Query: 350 VEEELDRAQER 382
V+ ELD A+ER
Sbjct: 1899 VQHELDEAEER 1909
Score = 38.5 bits (88), Expect = 0.004
Identities = 25/96 (26%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Frame = +2
Query: 116 NAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYFQNLKDAQEKLELSKK 295
NA ++A++A +D E+ K+ ++ HL++ K E Q +KD Q +L+ +++
Sbjct: 1750 NAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNME-------QTIKDLQHRLDEAEQ 1802
Query: 296 KA-SDAEGDVAALNRRIQLVEEELDRAQERLATALQ 400
A + + L R++ +E EL+ Q+R A +++
Sbjct: 1803 IALKGGKKQLQKLEARVRELENELEAEQKRNAESVK 1838
Score = 35.8 bits (81), Expect = 0.024
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Frame = +2
Query: 77 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVEEELTHLQKKLKGTEDELDKYFQ 253
+++KM L L ++N + QAE D A AEE+C Q+ + L+ K+K + L+ +
Sbjct: 873 LEEKMVSL-LQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMTERLEDEEE 931
Query: 254 NLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKL 406
+ K + + S+ + D+ L + VE+E + ++ +++
Sbjct: 932 MNAELTAKKRKLEDECSELKRDIDDLELTLAKVEKEKHATENKVKNLTEEM 982
Score = 34.7 bits (78), Expect = 0.053
Identities = 30/117 (25%), Positives = 58/117 (48%), Gaps = 15/117 (12%)
Frame = +2
Query: 68 MEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVEEEL--------------TH 202
+E K+K++ LKL +E+ +D E+DK+ +E+ K+ + EL +
Sbjct: 1048 LERAKRKLEGDLKLTQESIMD----LENDKQQLDERLKKKDFELNALNARIEDEQALGSQ 1103
Query: 203 LQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRA 373
LQKKLK + +++ +E+LE + + E + L+R ++ + E L+ A
Sbjct: 1104 LQKKLKELQ-------ARIEELEEELEAERTARAKVEKLRSDLSRELEEISERLEEA 1153
Score = 34.7 bits (78), Expect = 0.053
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = +2
Query: 95 MLKLDKEN-AIDRA-EQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYFQNLKDA 268
++KL KE A+ A +QA D +A E+K LT + KL+ D+L+ + K
Sbjct: 989 IVKLTKEKKALQEAHQQALDDLQAEEDKVNT----LTKAKVKLEQQVDDLEGSLEQEKKV 1044
Query: 269 QEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERL 385
+ LE +K+K EGD+ I +E + + ERL
Sbjct: 1045 RMDLERAKRK---LEGDLKLTQESIMDLENDKQQLDERL 1080
Score = 34.3 bits (77), Expect = 0.070
Identities = 22/104 (21%), Positives = 50/104 (47%), Gaps = 4/104 (3%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESD----KKAAEEKCKQVEEELTHLQKKLKGTEDE 235
ME K+ + + ++D ++ ++ KK E ++E +L+H + + +
Sbjct: 1583 MEQAKRNHLRMVDSLQTSLDAETRSRNEALRVKKKMEGDLNEMEIQLSHANRMAAEAQKQ 1642
Query: 236 LDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELD 367
+ LKD Q +L+ + + D + ++A + RR L++ EL+
Sbjct: 1643 VKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAELE 1686
Score = 28.1 bits (61), Expect = 5.0
Identities = 20/86 (23%), Positives = 43/86 (49%), Gaps = 2/86 (2%)
Frame = +2
Query: 134 EQAESDKKAA--EEKCKQVEEELTHLQKKLKGTEDELDKYFQNLKDAQEKLELSKKKASD 307
+ AE++K+ A +E+ +V++ L + + K E+++ Q D Q +++ + +D
Sbjct: 841 KSAETEKEMATMKEEFGRVKDALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLAD 900
Query: 308 AEGDVAALNRRIQLVEEELDRAQERL 385
AE L + +E ++ ERL
Sbjct: 901 AEERCDQLIKNKIQLEAKVKEMTERL 926
>gi|30424776|ref|NP_780381.1| (NM_175172) RIKEN cDNA 4930506M07 [Mus
musculus]
Length = 456
Score = 39.7 bits (91), Expect = 0.002
Identities = 22/86 (25%), Positives = 40/86 (45%)
Frame = +2
Query: 80 KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYFQNL 259
+K++Q++ KE AI E ++ + +EKC ++ +E KKL+ + + +
Sbjct: 7 EKQLQLITSLKEQAIGEYEDLRAENQKTKEKCDKIRQERDEAVKKLEEFQKISHMVIEEV 66
Query: 260 KDAQEKLELSKKKASDAEGDVAALNR 337
Q LE+ K AE LN+
Sbjct: 67 NFMQNHLEIEKTCRESAEALATKLNK 92
Score = 31.6 bits (70), Expect = 0.45
Identities = 21/82 (25%), Positives = 42/82 (50%), Gaps = 5/82 (6%)
Frame = +2
Query: 155 KAAEEKCK---QVEEELTHLQKKLKGTEDELDK--YFQNLKDAQEKLELSKKKASDAEGD 319
KA +E K Q+EEE QKK+K E+ L+ + + + +++LEL + + E
Sbjct: 264 KALDENAKLIQQLEEERIQHQKKVKELEERLENEALHKEIHNLRQQLELLEDDKRELEQK 323
Query: 320 VAALNRRIQLVEEELDRAQERL 385
+ + + ++ +D Q+R+
Sbjct: 324 YQSSEEKARNLKHSVDELQKRV 345
Score = 30.0 bits (66), Expect = 1.3
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDEL 238
EA+ K++ L+ E D + E +++EEK + ++ + LQK++ +E+ +
Sbjct: 297 EALHKEIHNLRQQLELLEDDKRELEQKYQSSEEKARNLKHSVDELQKRVNQSENSV 352
>gi|25072201|ref|NP_739563.1| (NM_170757) oocyte-testis gene 1 [Mus
musculus]
Length = 917
Score = 39.7 bits (91), Expect = 0.002
Identities = 29/121 (23%), Positives = 60/121 (48%), Gaps = 7/121 (5%)
Frame = +2
Query: 65 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKA-------AEEKCKQVEEELTHLQKKLKG 223
A++ I K+M ++D+ N + E+A +K+A E++ + +E L++KL+
Sbjct: 301 AIQQIHKEMAQ-RMDQANK--KCEEARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRD 357
Query: 224 TEDELDKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQK 403
EL+K +K ++ ++ EG+ L R I+ ++EE++ ++ A K
Sbjct: 358 ASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLIREIEKLKEEMNSQVIKVKWAQNK 417
Query: 404 L 406
L
Sbjct: 418 L 418
Score = 28.1 bits (61), Expect = 5.0
Identities = 28/126 (22%), Positives = 58/126 (45%), Gaps = 24/126 (19%)
Frame = +2
Query: 77 IKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLK-------GTEDE 235
++K+MQ +K + ++ + + + K+ +EL L+ K K TEDE
Sbjct: 482 LEKQMQ----EKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKAKCLEDERLRTEDE 537
Query: 236 LDKY----------FQNLKD-------AQEKLELSKKKASDAEGDVAALNRRIQLVEEEL 364
L KY QNL D E+L+ K++ + ++ +LN I +++++
Sbjct: 538 LSKYREIINRQKSEIQNLLDKVKITDQLHEQLQSGKQEIEHLKEEMESLNSLINDLQKDI 597
Query: 365 DRAQER 382
+ +++R
Sbjct: 598 EGSRKR 603
>gi|9507021|ref|NP_062273.1| (NM_019400) rabaptin 5; neurocrescin;
RAB5 effector protein [Mus musculus]
Length = 862
Score = 39.7 bits (91), Expect = 0.002
Identities = 23/94 (24%), Positives = 49/94 (51%), Gaps = 1/94 (1%)
Frame = +2
Query: 107 DKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY-FQNLKDAQEKLE 283
++EN + ++A+ D + +E+E+ L+ KL ED++ + +K+ LE
Sbjct: 166 EEENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVKELNHYLE 225
Query: 284 LSKKKASDAEGDVAALNRRIQLVEEELDRAQERL 385
K +D E VA LN + +++E+ ++ ++ L
Sbjct: 226 AEKSCRTDLEMYVAVLNTQKSVLQEDAEKLRKEL 259
>gi|16716511|ref|NP_444434.1| (NM_053204) Rab6-interacting protein 2
[Mus musculus]
Length = 1120
Score = 39.3 bits (90), Expect = 0.002
Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKEN---AIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDEL 238
M ++K++++ L+ D N A+ E+A +DK+ E+ K+ + + + ++E+
Sbjct: 594 MSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRD------RDEREKQEEI 647
Query: 239 DKYFQNLKDAQEKLELSKKKASDAEGDVAALNRRIQLVEEELDRAQERLAT 391
D Y ++LKD +EK+ L + S+ E + + + + RL T
Sbjct: 648 DTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKT 698
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 7,155,815
Number of sequences in database: 15,330
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8725901
Number of Sequences: 15330
Number of extensions: 203362
Number of successful extensions: 1498
Number of sequences better than 10.0: 209
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1428
length of query: 249
length of database: 7,155,815
effective HSP length: 47
effective length of query: 202
effective length of database: 6,435,305
effective search space: 1299931610
effective search space used: 1299931610
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)