Search to RefSeq (Human) database
Query= 20030531S-010687 (20030531S-010687) 20030531S-010687
(910 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,244 sequences; 10,046,356 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|20149600|ref|NP_036360.2| (NM_012228) pilin-like transcripti... 292 2e-79
Alignment gi|7706511|ref|NP_057416.1| (NM_016332) selenoprotein X, 1 [Hom... 52 8e-07
Alignment gi|22779860|ref|NP_005241.1| (NM_005250) forkhead box L1; forkh... 30 1.8
Alignment gi|13435397|ref|NP_077084.1| (NM_024165) PHD finger protein 1 i... 30 1.8
Alignment gi|4505777|ref|NP_002627.1| (NM_002636) PHD finger protein 1 is... 30 1.8
Alignment gi|23510283|ref|NP_060561.3| (NM_018091) elongation protein 3 h... 29 4.0
Alignment gi|4507961|ref|NP_003398.1| (NM_003407) zinc finger protein 36,... 29 5.3
Alignment gi|13376247|ref|NP_079112.1| (NM_024836) hypothetical protein F... 29 5.3
Alignment gi|6912330|ref|NP_036271.1| (NM_012139) deafness locus associat... 28 6.9
Alignment gi|14150001|ref|NP_115642.1| (NM_032266) hypothetical protein D... 28 6.9
>gi|20149600|ref|NP_036360.2| (NM_012228) pilin-like transcription
factor [Homo sapiens]
Length = 201
Score = 292 bits (748), Expect = 2e-79
Identities = 141/173 (81%), Positives = 148/173 (85%)
Frame = +1
Query: 37 GLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTPERFHVTREK 216
GL RAV G+A GG G+AGSL E L+KSEWQKKLTPE+F+VTREK
Sbjct: 29 GLTLGTAPRRAVRGQAGGGGPGTAGIVGEAGSLATCELPLAKSEWQKKLTPEQFYVTREK 88
Query: 217 GTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESDTGI 396
GTEPPFSG YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDES TGI
Sbjct: 89 GTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESHTGI 148
Query: 397 LRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPRKH 555
LRR+DTSLG+ARTEVVCKQCEAHLGHVFPDGPGP GQRFCINSVALKFKPRKH
Sbjct: 149 LRRLDTSLGSARTEVVCKQCEAHLGHVFPDGPGPNGQRFCINSVALKFKPRKH 201
>gi|7706511|ref|NP_057416.1| (NM_016332) selenoprotein X, 1 [Homo
sapiens]
Length = 116
Score = 51.6 bits (122), Expect = 8e-07
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Frame = +1
Query: 244 YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA-HGTSGSDESDTGILRRVDTSL 420
+ N+ E G+Y C C LFSS KY + WP+F+E H S + +R + +
Sbjct: 12 FQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADS--------VAKRPEHNR 63
Query: 421 GTARTEVVCKQCEAHLGHVF-PDGPGPTGQRF-CINSVALKFKPR 549
A +V C +C LGH F DGP P RF +S +LKF P+
Sbjct: 64 SEA-LKVSCGKCGNGLGHEFLNDGPKPGQSRFUIFSS-SLKFVPK 106
>gi|22779860|ref|NP_005241.1| (NM_005250) forkhead box L1; forkhead
(Drosophila)-like 11 [Homo sapiens]
Length = 345
Score = 30.4 bits (67), Expect = 1.8
Identities = 19/60 (31%), Positives = 24/60 (39%)
Frame = +2
Query: 44 PSERCSRGQCGVVPTMAASARRSEPETQGPLQSVSRSSPRVSGKRS*LQSDSTSREKKGQ 223
P+E G A R+ PL+ SRSSP+ S K DS K+GQ
Sbjct: 214 PNEDAGDAAQGAAAVAVGQAARTGDGPGSPLRPASRSSPKSSDKSKSFSIDSILAGKQGQ 273
>gi|13435397|ref|NP_077084.1| (NM_024165) PHD finger protein 1
isoform b [Homo sapiens]
Length = 567
Score = 30.4 bits (67), Expect = 1.8
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 161 LERNGSRFVRDPASPVPTFGLRPPL 87
L R+G+ + DPASP PT G RP L
Sbjct: 7 LSRSGASSLWDPASPAPTSGPRPRL 31
>gi|4505777|ref|NP_002627.1| (NM_002636) PHD finger protein 1
isoform a [Homo sapiens]
Length = 457
Score = 30.4 bits (67), Expect = 1.8
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 161 LERNGSRFVRDPASPVPTFGLRPPL 87
L R+G+ + DPASP PT G RP L
Sbjct: 7 LSRSGASSLWDPASPAPTSGPRPRL 31
>gi|23510283|ref|NP_060561.3| (NM_018091) elongation protein 3
homolog; likely ortholog of mouse elongation protein 3
homolog (S. cerevisiae) [Homo sapiens]
Length = 547
Score = 29.3 bits (64), Expect = 4.0
Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 14/53 (26%)
Frame = -1
Query: 421 PARCPHVS--GSLC------------HSHQSQMCREPQKMKAIQCQSSTFSQS 305
P RCPH+S G++C +S QS EP M+AI+ + F Q+
Sbjct: 96 PHRCPHISFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPFLQT 148
>gi|4507961|ref|NP_003398.1| (NM_003407) zinc finger protein 36, C3H
type, homolog; G0S24; zinc finger protein homologous to
Zfp-36 in mouse; Zinc finger protein, C3H type, 36
homolog (mouse); tristetraprolin [Homo sapiens]
Length = 326
Score = 28.9 bits (63), Expect = 5.3
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Frame = -1
Query: 484 QETHGQGELRTACRQPP-----CELF--PARCPHVSGSLCH 383
Q HG GELR A R P C F RCP+ GS CH
Sbjct: 125 QFAHGLGELRQANRHPKYKTELCHKFYLQGRCPY--GSRCH 163
>gi|13376247|ref|NP_079112.1| (NM_024836) hypothetical protein
FLJ22301 [Homo sapiens]
Length = 452
Score = 28.9 bits (63), Expect = 5.3
Identities = 16/54 (29%), Positives = 23/54 (41%)
Frame = -1
Query: 466 GELRTACRQPPCELFPARCPHVSGSLCHSHQSQMCREPQKMKAIQCQSSTFSQS 305
G R CR PC R PH+ L H + + P++ + + TF QS
Sbjct: 90 GAHRQRCRTCPCRTCGRRFPHLPALLLHRRRQHL---PERPRRCPLCARTFRQS 140
>gi|6912330|ref|NP_036271.1| (NM_012139) deafness locus associated
putative guanine nucleotide exchange factor [Homo
sapiens]
Length = 458
Score = 28.5 bits (62), Expect = 6.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 73 WGRADNGGLSPKVGTGDAGSLTKREPFL 156
WGRAD G L K+ T + L K++ FL
Sbjct: 289 WGRADYGQLGRKLETYEGWKLEKQDSFL 316
>gi|14150001|ref|NP_115642.1| (NM_032266) hypothetical protein
DKFZp434G118 [Homo sapiens]
Length = 939
Score = 28.5 bits (62), Expect = 6.9
Identities = 21/57 (36%), Positives = 27/57 (46%), Gaps = 2/57 (3%)
Frame = -1
Query: 400 SGSLCHSHQSQMCREPQKMKAIQCQSSTFSQS*RVGCHST-HSDTFLLPCY-SGRSH 236
SG CHS + R P M+ Q T +S R C T HS + + P SGR+H
Sbjct: 828 SGKTCHSPSERSHRSPSGMR----QGRTSERSHRSSCERTRHSPSEMRPGRPSGRNH 880
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 10,046,356
Number of sequences in database: 19,244
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20364894
Number of Sequences: 19244
Number of extensions: 541688
Number of successful extensions: 1615
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1615
length of query: 303
length of database: 10,046,356
effective HSP length: 47
effective length of query: 255
effective length of database: 9,141,888
effective search space: 2331181440
effective search space used: 2331181440
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search to RefSeq (Mouse) database
Query= 20030531S-010687 (20030531S-010687) 20030531S-010687
(910 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
15,330 sequences; 7,155,815 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|21313208|ref|NP_083895.1| (NM_029619) RIKEN cDNA 2310050L06 ... 272 2e-73
Alignment gi|28893017|ref|NP_796066.1| (NM_177092) RIKEN cDNA D430026P16 ... 140 1e-33
Alignment gi|7305479|ref|NP_038787.1| (NM_013759) selenoprotein R [Mus mu... 45 5e-05
Alignment gi|22122409|ref|NP_666082.1| (NM_145970) cDNA sequence BC016188... 33 0.20
Alignment gi|31982382|ref|NP_038891.3| (NM_013863) Bcl2-associated athano... 32 0.44
Alignment gi|16716371|ref|NP_444316.1| (NM_053086) nucleolar and coiled-b... 29 3.7
Alignment gi|6756059|ref|NP_035886.1| (NM_011756) zinc finger protein 36;... 29 3.7
Alignment gi|19527092|ref|NP_598639.1| (NM_133878) chromosome condensatio... 28 4.8
Alignment gi|27261816|ref|NP_080861.1| (NM_026585) DNA segment, Chr 6, Wa... 28 4.8
Alignment gi|6678267|ref|NP_033369.1| (NM_009343) PHD finger protein 1; t... 28 4.8
>gi|21313208|ref|NP_083895.1| (NM_029619) RIKEN cDNA 2310050L06 [Mus
musculus]
Length = 175
Score = 272 bits (695), Expect = 2e-73
Identities = 133/181 (73%), Positives = 145/181 (79%)
Frame = +1
Query: 10 MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP 189
MAR RA GLP + R G A +G + D GSLTK + LS+++WQKKLTP
Sbjct: 1 MARLLRALRGLPLLQAPGRLARGCAGSG-------SKDTGSLTKSKRSLSEADWQKKLTP 53
Query: 190 ERFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 369
E+F+VTREKGTE PFSG YLNNKE GMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA+G+
Sbjct: 54 EQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAYGSK 113
Query: 370 GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR 549
GSDES TGILRR+DTSLG R EVVCKQCEAHLGHVFPDGP PTGQRFCINSVALKFKP
Sbjct: 114 GSDESHTGILRRLDTSLGCPRMEVVCKQCEAHLGHVFPDGPKPTGQRFCINSVALKFKPS 173
Query: 550 K 552
K
Sbjct: 174 K 174
>gi|28893017|ref|NP_796066.1| (NM_177092) RIKEN cDNA D430026P16 gene
[Mus musculus]
Length = 186
Score = 140 bits (352), Expect = 1e-33
Identities = 64/130 (49%), Positives = 86/130 (65%)
Frame = +1
Query: 157 SKSEWQKKLTPERFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 336
S+ E +K+LTP ++HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 337 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 516
WP+F + + + +D D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPAFHDVISSEAIEFTD-------DFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 517 INSVALKFKP 546
INS +L F P
Sbjct: 152 INSASLSFTP 161
>gi|7305479|ref|NP_038787.1| (NM_013759) selenoprotein R [Mus
musculus]
Length = 116
Score = 45.1 bits (105), Expect = 5e-05
Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Frame = +1
Query: 244 YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA-HGTSGSDESDTGILRRVDTSL 420
+ N+ E G+Y C C LFSS KY + WP+F+E H S + +
Sbjct: 12 FQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDS---------VTKCPEKN 62
Query: 421 GTARTEVVCKQCEAHLGHVF-PDGPGPTGQRF-CINSVALKFKPR 549
+V C +C LGH F DGP RF +S +LKF P+
Sbjct: 63 RPEALKVSCGKCGNGLGHEFLNDGPKRGQSRFUIFSS-SLKFVPK 106
>gi|22122409|ref|NP_666082.1| (NM_145970) cDNA sequence BC016188;
hypothetical protein MGC27560 [Mus musculus]
Length = 595
Score = 33.1 bits (74), Expect = 0.20
Identities = 27/78 (34%), Positives = 34/78 (42%), Gaps = 4/78 (5%)
Frame = +1
Query: 289 DSPLFSSEKKYCSGTGWPSFSEAHGTSG--SDESDTGILRRVDTSLGTARTEVVCKQ--C 456
DSP F + K C G F A T G + G L + D LGTA+ ++ + C
Sbjct: 351 DSPEFKEQFKLCINRGHRGFRRAIQTKGIKFEVVHKGGLFKTDRVLGTAQLKLGTLETAC 410
Query: 457 EAHLGHVFPDGPGPTGQR 510
E H DG PTG R
Sbjct: 411 EVHEILEVLDGRRPTGGR 428
>gi|31982382|ref|NP_038891.3| (NM_013863) Bcl2-associated athanogene
3; Bcl-2-interacting death supressor [Mus musculus]
Length = 577
Score = 32.0 bits (71), Expect = 0.44
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 68 QCGVVPTMAASARRSEPETQGPLQSVSRSSPRVSGKRS*LQSDSTSREKKGQNRLSVG 241
QCG +P A +A P GP +S S ++ S S S+ R G ++L G
Sbjct: 153 QCGQMPATATTAAAQPPTAHGPERSQSPAASDCSSSSSSASLPSSGRSSLGSHQLPRG 210
>gi|16716371|ref|NP_444316.1| (NM_053086) nucleolar and coiled-body
phosphoprotein 1 [Mus musculus]
Length = 399
Score = 28.9 bits (63), Expect = 3.7
Identities = 16/51 (31%), Positives = 25/51 (48%)
Frame = +2
Query: 65 GQCGVVPTMAASARRSEPETQGPLQSVSRSSPRVSGKRS*LQSDSTSREKK 217
G VP + + P TQ P ++ +++ P S S SDS+S E+K
Sbjct: 297 GPYSSVPPPSVPLPKKSPGTQAPKKAAAQTQPADSSDDSSDDSDSSSEEEK 347
>gi|6756059|ref|NP_035886.1| (NM_011756) zinc finger protein 36;
tristetraprolin [Mus musculus]
Length = 319
Score = 28.9 bits (63), Expect = 3.7
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Frame = -1
Query: 484 QETHGQGELRTACRQPP-----CELF--PARCPHVSGSLCH 383
Q HG GELR A R P C F RCP+ GS CH
Sbjct: 117 QFAHGLGELRQANRHPKYKTELCHKFYLQGRCPY--GSRCH 155
>gi|19527092|ref|NP_598639.1| (NM_133878) chromosome condensation 1
[Mus musculus]
Length = 421
Score = 28.5 bits (62), Expect = 4.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 602 FGNERVEEKGTPGDGQCFLGLNLSA 528
FG + GTPG G CF+ NL++
Sbjct: 264 FGLSNYHQLGTPGTGSCFIPQNLTS 288
>gi|27261816|ref|NP_080861.1| (NM_026585) DNA segment, Chr 6, Wayne
State University 116, expressed [Mus musculus]
Length = 1334
Score = 28.5 bits (62), Expect = 4.8
Identities = 11/30 (36%), Positives = 19/30 (62%)
Frame = +1
Query: 79 RADNGGLSPKVGTGDAGSLTKREPFLSKSE 168
+ DN +SP+VG+ D S+ ++E L S+
Sbjct: 740 KVDNARVSPEVGSADVASIAQKEGLLPASD 769
>gi|6678267|ref|NP_033369.1| (NM_009343) PHD finger protein 1;
t-complex testis-expressed 3; DNA segment, Chr 17, ERATO
Doi 455, expressed [Mus musculus]
Length = 580
Score = 28.5 bits (62), Expect = 4.8
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 161 LERNGSRFVRDPASPVPTFGLRPPL 87
L R G+ + DPASP PT G RP L
Sbjct: 7 LSRLGAPSLWDPASPAPTSGPRPRL 31
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 7,155,815
Number of sequences in database: 15,330
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14385284
Number of Sequences: 15330
Number of extensions: 373073
Number of successful extensions: 1155
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of query: 303
length of database: 7,155,815
effective HSP length: 47
effective length of query: 255
effective length of database: 6,435,305
effective search space: 1641002775
effective search space used: 1641002775
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)