Search to RefSeq (Human) database
Query= 20030531S-016235 (20030531S-016235) 20030531S-016235
(570 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,244 sequences; 10,046,356 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|27597085|ref|NP_000357.3| (NM_000366) tropomyosin 1 (alpha) ... 197 5e-51
Alignment gi|4507649|ref|NP_003280.1| (NM_003289) tropomyosin 2 (beta) [H... 191 3e-49
Alignment gi|22748619|ref|NP_689476.1| (NM_152263) tropomyosin 3 [Homo sa... 115 2e-26
Alignment gi|4507651|ref|NP_003281.1| (NM_003290) tropomyosin 4 [Homo sap... 92 2e-19
Alignment gi|24119203|ref|NP_705935.1| (NM_153649) tropomyosin 3 [Homo sa... 85 3e-17
Alignment gi|11024712|ref|NP_060003.1| (NM_017533) myosin, heavy polypept... 45 3e-05
Alignment gi|21735548|ref|NP_009117.2| (NM_007186) centrosomal protein 2;... 45 5e-05
Alignment gi|7669506|ref|NP_005954.2| (NM_005963) myosin, heavy polypepti... 45 5e-05
Alignment gi|4557773|ref|NP_000248.1| (NM_000257) myosin, heavy polypepti... 44 7e-05
Alignment gi|13259510|ref|NP_004073.2| (NM_004082) dynactin 1 isoform 1; ... 44 9e-05
>gi|27597085|ref|NP_000357.3| (NM_000366) tropomyosin 1 (alpha)
[Homo sapiens]
Length = 284
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 247
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 248 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 427
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 428 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 568
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
Score = 37.7 bits (86), Expect = 0.006
Identities = 29/119 (24%), Positives = 56/119 (46%), Gaps = 4/119 (3%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDEL---- 238
E + +K+ +++ D E A +RAE +E + EE+ + + + L K L ED+
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTL----KALMAAEDKYSQKE 218
Query: 239 DLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEA 415
D Y E +K + L+ + +A ++ V L + I +DE + + + L+ A
Sbjct: 219 DRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHA 277
>gi|4507649|ref|NP_003280.1| (NM_003289) tropomyosin 2 (beta) [Homo
sapiens]
Length = 284
Score = 191 bits (486), Expect = 3e-49
Identities = 100/167 (59%), Positives = 132/167 (78%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 247
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+ EE L KKLKGTEDE++ Y
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 248 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 427
SE++K+AQE LE + KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 428 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 568
D ++R KV + RA+ + EKM + + QL E K A+D+ ++E AR
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVAR 167
Score = 39.7 bits (91), Expect = 0.002
Identities = 32/122 (26%), Positives = 58/122 (47%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYS 250
E + +K+ +L+ + E + +RAE AES + EE+ + + + L L + + D Y
Sbjct: 163 EEVARKLVILEGELERSEERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYE 222
Query: 251 ENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAAD 430
E +K +E L+ + +A ++ VA L + I +E L++A E Q D
Sbjct: 223 EEIKLLEEKLKEAETRAEFAERSVAKLEKTID-------DLEETLASAKEENVEIHQTLD 275
Query: 431 AT 436
T
Sbjct: 276 QT 277
>gi|22748619|ref|NP_689476.1| (NM_152263) tropomyosin 3 [Homo
sapiens]
Length = 243
Score = 115 bits (288), Expect = 2e-26
Identities = 73/167 (43%), Positives = 98/167 (57%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 247
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+ EDEL
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQL--------------EDEL--- 44
Query: 248 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 427
AA+ ++++ +DE R+QERL+TAL LEEAE+AA
Sbjct: 45 -------------------------AAMQKKLKGTEDELDRAQERLATALQKLEEAEKAA 79
Query: 428 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 568
D ++R KV + RAL + EKM + + QL E K A++A ++E AR
Sbjct: 80 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVAR 126
Score = 43.5 bits (101), Expect = 1e-04
Identities = 30/115 (26%), Positives = 54/115 (46%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYS 250
E + +K+ +++ D E +RAE AES EE+ K V L L + + + D Y
Sbjct: 122 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 181
Query: 251 ENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEA 415
E +K + L+ + +A ++ VA L + I +DE + + + L+ A
Sbjct: 182 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHA 236
>gi|4507651|ref|NP_003281.1| (NM_003290) tropomyosin 4 [Homo
sapiens]
Length = 248
Score = 92.4 bits (228), Expect = 2e-19
Identities = 51/125 (40%), Positives = 79/125 (62%)
Frame = +2
Query: 194 LTHLHKKLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRS 373
L + +K++ + + D + + Q L+ + ++GDVAALN+RIQL ++E R+
Sbjct: 7 LEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRA 66
Query: 374 QERLSTALPNLEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHF 553
QERL+TAL LEEAE+AAD ++R KV + RA+ + EKM I + QL E K A++A +
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 126
Query: 554 KEAAR 568
+E AR
Sbjct: 127 EEVAR 131
Score = 51.6 bits (122), Expect = 4e-07
Identities = 30/127 (23%), Positives = 66/127 (51%)
Frame = +2
Query: 65 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDL 244
++EA+K+K+Q L+ + A DRA+ + + E+ ++ ++ L+++++ E+ELD
Sbjct: 6 SLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDR 65
Query: 245 YSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQA 424
E L A + LE + A +S+ + + R +++ + +L A EEA++
Sbjct: 66 AQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRK 125
Query: 425 ADATQRR 445
+ R+
Sbjct: 126 YEEVARK 132
Score = 35.8 bits (81), Expect = 0.024
Identities = 26/103 (25%), Positives = 52/103 (50%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYS 250
E + +K+ +L+ + E A +RAE +E EE+ K V L L + ++ D Y
Sbjct: 127 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 186
Query: 251 ENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQE 379
E +K + L+ + +A ++ VA L + I +++ +++E
Sbjct: 187 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 229
>gi|24119203|ref|NP_705935.1| (NM_153649) tropomyosin 3 [Homo
sapiens]
Length = 248
Score = 85.1 bits (209), Expect = 3e-17
Identities = 48/120 (40%), Positives = 75/120 (62%)
Frame = +2
Query: 209 KKLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLS 388
+K++ + + D E + Q +E ++ +VA+LN+RIQL ++E R+QERL+
Sbjct: 12 RKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLA 71
Query: 389 TALPNLEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 568
TAL LEEAE+AAD ++R KV + RAL + EKM + + QL E K A++A ++E AR
Sbjct: 72 TALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVAR 131
Score = 55.8 bits (133), Expect = 2e-08
Identities = 47/181 (25%), Positives = 91/181 (49%), Gaps = 21/181 (11%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 247
+EA+K+K+Q+L+ ++A +RAE+ + + + +Q E+ L+++++ E+ELD
Sbjct: 7 IEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRA 66
Query: 248 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQE-RLSTALPNLEEAEQA 424
E L A + LE + A +S+ + + R L +EK QE +L A EEA++
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENR-ALKDEEKMELQEIQLKEAKHIAEEADRK 125
Query: 425 --------------ADATQRRTKVTKTRALYESEKMVIHDKQL-----AEDK-STADDAY 544
+ T+ R ++ ++R E++ + D+ L AE+K S +D Y
Sbjct: 126 YEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKY 185
Query: 545 D 547
+
Sbjct: 186 E 186
Score = 37.7 bits (86), Expect = 0.006
Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHL-------HKKLKGTE 229
E + +K+ +++ D E +RAE AES + +E+ + + + L L +K E
Sbjct: 127 EEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYE 186
Query: 230 DELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLE 409
+E+ + ++ LK+A+ E + + + + L +++ ++E +Q L L +L
Sbjct: 187 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 246
Query: 410 E 412
E
Sbjct: 247 E 247
>gi|11024712|ref|NP_060003.1| (NM_017533) myosin, heavy polypeptide 4,
skeletal muscle [Homo sapiens]
Length = 1939
Score = 45.4 bits (106), Expect = 3e-05
Identities = 48/155 (30%), Positives = 77/155 (48%), Gaps = 6/155 (3%)
Frame = +2
Query: 77 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVGEELTHLHKKLK----GTEDELD 241
+++KM L +K N + QAE+D A AEE+C Q+ + L K+K EDE +
Sbjct: 877 LEEKMVTLMQEK-NDLQLQVQAEADALADAEERCDQLIKTKIQLEAKIKEVTERAEDEEE 935
Query: 242 LYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQ 421
+ +E L + LE + S+ K D+ L + + EKH ++ ++ NL E
Sbjct: 936 INAE-LTAKKRKLE---DECSELKKDIDDLELTLAKVEKEKHATENKVK----NLTEEMA 987
Query: 422 AADATQRRTKVTK-TRALYESEKMVIHDKQLAEDK 523
D T K+TK +AL E+ + + D Q+ EDK
Sbjct: 988 GLDET--IAKLTKEKKALQEAHQQTLDDLQMEEDK 1020
Score = 31.6 bits (70), Expect = 0.45
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 16/174 (9%)
Frame = +2
Query: 59 CPAMEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLH--------- 208
C +E K+K++ LKL +E+ +D E+DK+ EK K+ E+++L
Sbjct: 1049 CMDLERAKRKLEGDLKLAQESTMD----TENDKQQLNEKLKKKEFEMSNLQGKIEDEQAL 1104
Query: 209 -----KKLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRS 373
KK+K EL E L++ E S KA + D++ R
Sbjct: 1105 AMQLQKKIK----ELQARIEELEEEIEAERASRAKAEKQRSDLS--------------RE 1146
Query: 374 QERLSTALPNLEEAEQAADATQRRTKVTKTR-ALYESEKMVIHDKQLAEDKSTA 532
E +S E E+A AT + ++ K R A ++ + + + L + + A
Sbjct: 1147 LEEIS------ERLEEAGGATSAQIELNKKREAEFQKMRRDLEESTLQHEATAA 1194
>gi|21735548|ref|NP_009117.2| (NM_007186) centrosomal protein 2;
centrosome associated protein; centrosomal
Nek2-associated protein 1 [Homo sapiens]
Length = 2442
Score = 44.7 bits (104), Expect = 5e-05
Identities = 36/141 (25%), Positives = 68/141 (47%), Gaps = 9/141 (6%)
Frame = +2
Query: 65 AMEAIKKKMQMLKLDKENA-----IDRAEQAES----DKKAAEEKCKQVGEELTHLHKKL 217
A++ + Q+L+L++EN ++ AEQA + D AE++ + + E+ THL +L
Sbjct: 609 ALDKVGLNQQLLQLEEENQSVCSRMEAAEQARNALQVDLAEAEKRREALWEKNTHLEAQL 668
Query: 218 KGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTAL 397
+ E+ +L+D QE E K S+S+ A +++ E R +E L+ A+
Sbjct: 669 QKAEEAGAELQADLRDIQEEKEEIQKKLSESRHQQEAATTQLEQLHQEAKRQEEVLARAV 728
Query: 398 PNLEEAEQAADATQRRTKVTK 460
E + A + R + +
Sbjct: 729 QEKEALVREKAALEVRLQAVE 749
Score = 30.4 bits (67), Expect = 1.0
Identities = 27/133 (20%), Positives = 61/133 (45%), Gaps = 3/133 (2%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYS 250
EA+ +K L+ + A + + ++D + +E+ +++ ++L+ + + +L+
Sbjct: 655 EALWEKNTHLEAQLQKAEEAGAELQADLRDIQEEKEEIQKKLSESRHQQEAATTQLEQLH 714
Query: 251 ENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQER---LSTALPNLEEAEQ 421
+ K +E L + + + AAL R+Q + ++ E+ LS+A LE +
Sbjct: 715 QEAKRQEEVLARAVQEKEALVREKAALEVRLQAVERDRQDLAEQLQGLSSAKELLESSLF 774
Query: 422 AADATQRRTKVTK 460
A +VTK
Sbjct: 775 EAQQQNSVIEVTK 787
>gi|7669506|ref|NP_005954.2| (NM_005963) myosin, heavy polypeptide 1,
skeletal muscle, adult; myosin heavy chain IIx/d [Homo
sapiens]
Length = 1939
Score = 44.7 bits (104), Expect = 5e-05
Identities = 48/155 (30%), Positives = 76/155 (48%), Gaps = 6/155 (3%)
Frame = +2
Query: 77 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVGEELTHLHKKLK----GTEDELD 241
+++KM L +K N + QAE+D A AEE+C Q+ + L K+K EDE +
Sbjct: 877 LEEKMVTLMQEK-NDLQLQVQAEADSLADAEERCDQLIKTKIQLEAKIKEVTERAEDEEE 935
Query: 242 LYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQ 421
+ +E L + LE + S+ K D+ L + + EKH ++ ++ NL E
Sbjct: 936 INAE-LTAKKRKLE---DECSELKKDIDDLELTLAKVEKEKHATENKVK----NLTEEMA 987
Query: 422 AADATQRRTKVTK-TRALYESEKMVIHDKQLAEDK 523
D T K+TK +AL E+ + + D Q EDK
Sbjct: 988 GLDET--IAKLTKEKKALQEAHQQTLDDLQAEEDK 1020
Score = 37.0 bits (84), Expect = 0.011
Identities = 39/146 (26%), Positives = 71/146 (47%), Gaps = 5/146 (3%)
Frame = +2
Query: 68 MEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDL 244
+E K+K++ LKL +E+A+D E+DK+ +EK K+ E++ L K+ EDE L
Sbjct: 1052 LERAKRKLEGDLKLAQESAMD----IENDKQQLDEKLKKKEFEMSGLQSKI---EDEQAL 1104
Query: 245 YSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEE---- 412
+ K K + + + L + I+ + + +++++ S LEE
Sbjct: 1105 GMQLQK-----------KIKELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISER 1153
Query: 413 AEQAADATQRRTKVTKTRALYESEKM 490
E+A AT + ++ K R E +KM
Sbjct: 1154 LEEAGGATSAQIEMNKKREA-EFQKM 1178
>gi|4557773|ref|NP_000248.1| (NM_000257) myosin, heavy polypeptide 7,
cardiac muscle, beta [Homo sapiens]
Length = 1935
Score = 44.3 bits (103), Expect = 7e-05
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 2/151 (1%)
Frame = +2
Query: 77 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVGEELTHLHKKLKGTEDELDLYSE 253
+++KM L L ++N + QAE D A AEE+C Q+ + L K+K + L+ E
Sbjct: 873 LEEKMVSL-LQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNERLEDEEE 931
Query: 254 NLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAADA 433
+ + S+ K D+ L + + EKH ++ ++ E+ A
Sbjct: 932 MNAELTAKKRKLEDECSELKRDIDDLELTLAKVEKEKHATENKVKNL------TEEMAGL 985
Query: 434 TQRRTKVTK-TRALYESEKMVIHDKQLAEDK 523
+ K+TK +AL E+ + + D Q EDK
Sbjct: 986 DEIIAKLTKEKKALQEAHQQALDDLQAEEDK 1016
Score = 34.7 bits (78), Expect = 0.053
Identities = 30/165 (18%), Positives = 74/165 (44%), Gaps = 10/165 (6%)
Frame = +2
Query: 80 KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYSENL 259
+K+M +K + + E++E+ +K EEK + +E L +++ +D NL
Sbjct: 846 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQD-------NL 898
Query: 260 KDAQE*LELSYMKASDSKGDVAALNQRIQLPQD-------EKHRSQERLSTALPNLEEAE 418
DA+E + + V +N+R++ ++ +K + ++ S ++++ E
Sbjct: 899 ADAEERCDQLIKNKIQLEAKVKEMNERLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 958
Query: 419 QAADATQRRTKVTKTRALYESEKMVIHDK---QLAEDKSTADDAY 544
++ T+ + +E+M D+ +L ++K +A+
Sbjct: 959 LTLAKVEKEKHATENKVKNLTEEMAGLDEIIAKLTKEKKALQEAH 1003
Score = 30.4 bits (67), Expect = 1.0
Identities = 33/172 (19%), Positives = 73/172 (42%), Gaps = 7/172 (4%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESD----KKAAEEKCKQVGEELTHLHKKLKGTEDE 235
ME K+ + + ++D ++ ++ KK E ++ +L+H ++ + +
Sbjct: 1583 MEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEMEIQLSHANRMAAEAQKQ 1642
Query: 236 LDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEA 415
+ LKD Q L+ + D K ++A + +R L Q E + + + + A
Sbjct: 1643 VKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAELEELRAVVEQTERSRKLA 1702
Query: 416 EQAADATQRRTKV---TKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEA 562
EQ T R ++ T + + +KM D L++ ++ ++A + A
Sbjct: 1703 EQELIETSERVQLLHSQNTSLINQKKKM---DADLSQLQTEVEEAVQECRNA 1751
>gi|13259510|ref|NP_004073.2| (NM_004082) dynactin 1 isoform 1;
dynactin 1 (p150, Glued (Drosophila) homolog); p150,
Glued (Drosophila) homolog; 150 kDa dynein-associated
polypeptide; p150-glued [Homo sapiens]
Length = 1278
Score = 43.9 bits (102), Expect = 9e-05
Identities = 43/179 (24%), Positives = 85/179 (47%), Gaps = 19/179 (10%)
Frame = +2
Query: 89 MQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKL--KGTE--------DEL 238
++M LDKE A +RAE + + +A +E+ ++ +L L ++ KG++ +L
Sbjct: 304 IEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQLKQL 363
Query: 239 DLYSENLKDAQE*LELSYMKASDSKGDV------AALNQRIQLPQDEKHRSQERLSTALP 400
+ + LKDA + + + +S+ + V NQ +++ + ++ R QE LS A
Sbjct: 364 EEQNARLKDAL--VRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQAES 421
Query: 401 NLEEAEQAADA---TQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 568
++E ++ DA + ++ R L EK V ++ D ++ D +E AR
Sbjct: 422 TIDELKEQVDAALGAEEMVEMLTDRNLNLEEK-VRELRETVGDLEAMNEMNDELQENAR 479
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 10,046,356
Number of sequences in database: 19,244
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8853035
Number of Sequences: 19244
Number of extensions: 197870
Number of successful extensions: 1203
Number of sequences better than 10.0: 165
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of query: 190
length of database: 10,046,356
effective HSP length: 47
effective length of query: 142
effective length of database: 9,141,888
effective search space: 1298148096
effective search space used: 1298148096
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search to RefSeq (Mouse) database
Query= 20030531S-016235 (20030531S-016235) 20030531S-016235
(570 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
15,330 sequences; 7,155,815 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|31560030|ref|NP_077745.2| (NM_024427) tropomyosin 1, alpha; ... 197 3e-51
Alignment gi|11875203|ref|NP_033442.2| (NM_009416) tropomyosin 2, beta [M... 193 6e-50
Alignment gi|13928666|ref|NP_071709.1| (NM_022314) tropomyosin 3, gamma; ... 190 6e-49
Alignment gi|18859641|ref|NP_542766.1| (NM_080728) myosin, heavy polypept... 44 6e-05
Alignment gi|6681147|ref|NP_031861.1| (NM_007835) dynactin 1; dynactin 1,... 44 8e-05
Alignment gi|21489941|ref|NP_659210.1| (NM_144961) myosin, heavy polypept... 43 1e-04
Alignment gi|6754774|ref|NP_034986.1| (NM_010856) myosin, heavy polypepti... 42 2e-04
Alignment gi|9910570|ref|NP_064322.1| (NM_019938) polyamine modulated fac... 40 0.001
Alignment gi|9507021|ref|NP_062273.1| (NM_019400) rabaptin 5; neurocresci... 39 0.003
Alignment gi|6679671|ref|NP_031969.1| (NM_007943) epidermal growth factor... 38 0.003
>gi|31560030|ref|NP_077745.2| (NM_024427) tropomyosin 1, alpha;
alpha tropomyosin [Mus musculus]
Length = 284
Score = 197 bits (501), Expect = 3e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 247
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 248 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 427
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 428 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 568
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
Score = 41.6 bits (96), Expect = 3e-04
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYS 250
E + +K+ +++ D E A +RAE +E EE+ K V L L + + + D Y
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 251 ENLKDAQE*LELSYMKASDSKGDVAALNQRI-QLPQDEKHRSQERLS 388
E +K + L+ + +A ++ V L + I L + H +E LS
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLS 269
>gi|11875203|ref|NP_033442.2| (NM_009416) tropomyosin 2, beta [Mus
musculus]
Length = 284
Score = 193 bits (490), Expect = 6e-50
Identities = 101/167 (60%), Positives = 132/167 (78%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 247
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+ EE L KKLKGTEDE++ Y
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 248 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 427
SE++KDAQE LE + KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 428 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 568
D ++R KV + RA+ + EKM + + QL E K A+D+ ++E AR
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVAR 167
Score = 42.0 bits (97), Expect = 2e-04
Identities = 31/115 (26%), Positives = 55/115 (46%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYS 250
E + +K+ +L+ + E + +RAE AES EE+ K V L L + + D Y
Sbjct: 163 EEVARKLVILEGELERSEERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYE 222
Query: 251 ENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEA 415
E +K +E L+ + +A ++ VA L + I +DE + + + L+ A
Sbjct: 223 EEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNA 277
>gi|13928666|ref|NP_071709.1| (NM_022314) tropomyosin 3, gamma;
skalphaTM.2; tropomyosin 5 [Mus musculus]
Length = 284
Score = 190 bits (482), Expect = 6e-49
Identities = 101/167 (60%), Positives = 131/167 (77%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 247
MEAIKKKMQMLKLDKEN +DRAEQAE+++K AEE+ KQ+ +EL + KKLKGTEDELD Y
Sbjct: 1 MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKY 60
Query: 248 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 427
SE LKDAQE LEL+ KA+D++ +VA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 428 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 568
D ++R KV + RAL + EKM + + QL E K A++A ++E AR
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVAR 167
Score = 43.5 bits (101), Expect = 8e-05
Identities = 30/115 (26%), Positives = 54/115 (46%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYS 250
E + +K+ +++ D E +RAE AES EE+ K V L L + + + D Y
Sbjct: 163 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 251 ENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEA 415
E +K + L+ + +A ++ VA L + I +DE + + + L+ A
Sbjct: 223 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISDELDHA 277
>gi|18859641|ref|NP_542766.1| (NM_080728) myosin, heavy polypeptide 7,
cardiac muscle, beta; myosin heavy chain, cardiac muscle,
fetal [Mus musculus]
Length = 1935
Score = 43.9 bits (102), Expect = 6e-05
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 2/151 (1%)
Frame = +2
Query: 77 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVGEELTHLHKKLKGTEDELDLYSE 253
+++KM L L ++N + QAE D A AEE+C Q+ + L K+K + L+ E
Sbjct: 873 LEEKMVSL-LQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMTERLEDEEE 931
Query: 254 NLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAADA 433
+ + S+ K D+ L + + EKH ++ ++ E+ A
Sbjct: 932 MNAELTAKKRKLEDECSELKRDIDDLELTLAKVEKEKHATENKVKNL------TEEMAGL 985
Query: 434 TQRRTKVTK-TRALYESEKMVIHDKQLAEDK 523
+ K+TK +AL E+ + + D Q EDK
Sbjct: 986 DEIIVKLTKEKKALQEAHQQALDDLQAEEDK 1016
Score = 39.7 bits (91), Expect = 0.001
Identities = 35/126 (27%), Positives = 61/126 (47%), Gaps = 5/126 (3%)
Frame = +2
Query: 107 DKENAIDRA----EQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYSENLKDAQE 274
DK N + +A EQ D + + E+ K+V +L +KL+G +L L E++ D +
Sbjct: 1015 DKVNTLTKAKVKLEQQVDDLEGSLEQEKKVRMDLERAKRKLEG---DLKLTQESIMDLEN 1071
Query: 275 *LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAADATQ-RRTK 451
+ + ++ ALN RI+ Q + Q++L +EE E+ +A + R K
Sbjct: 1072 DKQQLDERLKKKDFELNALNARIEDEQALGSQLQKKLKELQARIEELEEELEAERTARAK 1131
Query: 452 VTKTRA 469
V K R+
Sbjct: 1132 VEKLRS 1137
Score = 33.9 bits (76), Expect = 0.066
Identities = 30/165 (18%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Frame = +2
Query: 80 KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYSENL 259
+K+M +K + D E++E+ +K EEK + +E L +++ +D NL
Sbjct: 846 EKEMATMKEEFGRVKDALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQD-------NL 898
Query: 260 KDAQE*LELSYMKASDSKGDVAALNQRIQLPQD-------EKHRSQERLSTALPNLEEAE 418
DA+E + + V + +R++ ++ +K + ++ S ++++ E
Sbjct: 899 ADAEERCDQLIKNKIQLEAKVKEMTERLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 958
Query: 419 QAADATQRRTKVTKTRALYESEKMVIHDK---QLAEDKSTADDAY 544
++ T+ + +E+M D+ +L ++K +A+
Sbjct: 959 LTLAKVEKEKHATENKVKNLTEEMAGLDEIIVKLTKEKKALQEAH 1003
Score = 30.8 bits (68), Expect = 0.56
Identities = 33/172 (19%), Positives = 73/172 (42%), Gaps = 7/172 (4%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESD----KKAAEEKCKQVGEELTHLHKKLKGTEDE 235
ME K+ + + ++D ++ ++ KK E ++ +L+H ++ + +
Sbjct: 1583 MEQAKRNHLRMVDSLQTSLDAETRSRNEALRVKKKMEGDLNEMEIQLSHANRMAAEAQKQ 1642
Query: 236 LDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEA 415
+ LKD Q L+ + D K ++A + +R L Q E + + + + A
Sbjct: 1643 VKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAELEELRAVVEQTERSRKLA 1702
Query: 416 EQAADATQRRTKV---TKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEA 562
EQ T R ++ T + + +KM D L++ ++ ++A + A
Sbjct: 1703 EQELIETSERVQLLHSQNTSLINQKKKM---DADLSQLQTEVEEAVQECRNA 1751
>gi|6681147|ref|NP_031861.1| (NM_007835) dynactin 1; dynactin 1,
retrograde axonal transport [Mus musculus]
Length = 1281
Score = 43.5 bits (101), Expect = 8e-05
Identities = 43/179 (24%), Positives = 85/179 (47%), Gaps = 19/179 (10%)
Frame = +2
Query: 89 MQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKL--KGTE--------DEL 238
++M LDKE A +RAE + + +A +E+ ++ +L L ++ KG++ +L
Sbjct: 304 IEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQLKQL 363
Query: 239 DLYSENLKDAQE*LELSYMKASDSKGDV------AALNQRIQLPQDEKHRSQERLSTALP 400
+ + LKDA + + + +S+ + V NQ +++ + ++ R QE LS A
Sbjct: 364 EEQNARLKDAL--VRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQAES 421
Query: 401 NLEEAEQAADA---TQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 568
++E ++ DA + ++ R L EK V ++ D ++ D +E AR
Sbjct: 422 TIDELKEQVDAALGAEEMVEMLTDRNLNLEEK-VRELRETVGDLEAMNEMNDXLQENAR 479
>gi|21489941|ref|NP_659210.1| (NM_144961) myosin, heavy polypeptide 2,
skeletal muscle, adult; myosin heavy chain 2A [Mus
musculus]
Length = 1598
Score = 43.1 bits (100), Expect = 1e-04
Identities = 50/160 (31%), Positives = 80/160 (49%), Gaps = 9/160 (5%)
Frame = +2
Query: 71 EAIKKKMQ--MLKLDKE-NAIDRAEQAESDKKA-AEEKCKQVGEELTHLHKKLK----GT 226
EA +K+++ M+ L KE N + QAE++ A AEE+C Q+ + L K+K
Sbjct: 874 EAKRKELEEKMVSLLKEKNDLQLQVQAEAEGLADAEERCDQLIKTKIQLEAKIKEVTERA 933
Query: 227 EDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNL 406
EDE ++ +E L + LE + S+ K D+ L + + EKH ++ ++ NL
Sbjct: 934 EDEEEINAE-LTAKKRKLE---DECSELKKDIDDLELTLAKVEKEKHATENKVK----NL 985
Query: 407 EEAEQAADATQRRTKVTK-TRALYESEKMVIHDKQLAEDK 523
E D T K+TK +AL E+ + + D Q EDK
Sbjct: 986 TEEMAGLDET--IAKLTKEKKALQEAHQQTLDDLQAEEDK 1023
Score = 26.9 bits (58), Expect = 8.1
Identities = 19/96 (19%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Frame = +2
Query: 293 MKASDSKGDVAALNQRIQLPQDEKHRSQ---------------ERLSTALPNLEEAEQAA 427
+K+++++ ++A + + Q +D+ +S+ E+ L EAE A
Sbjct: 847 LKSAETEKEMATMKEEFQKTKDDLAKSEAKRKELEEKMVSLLKEKNDLQLQVQAEAEGLA 906
Query: 428 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTAD 535
DA +R ++ KT+ E++ + ++ E++ A+
Sbjct: 907 DAEERCDQLIKTKIQLEAKIKEVTERAEDEEEINAE 942
>gi|6754774|ref|NP_034986.1| (NM_010856) myosin, heavy polypeptide 6,
cardiac muscle, alpha; myosin heavy chain, cardiac
muscle, adult; alpha myosin; alpha cardiac MHC;
cardiomyopathy, hypertrophic 1 [Mus musculus]
Length = 1938
Score = 42.4 bits (98), Expect = 2e-04
Identities = 39/151 (25%), Positives = 68/151 (44%), Gaps = 2/151 (1%)
Frame = +2
Query: 77 IKKKMQMLKLDKENAIDRAEQAESDK-KAAEEKCKQVGEELTHLHKKLKGTEDELDLYSE 253
+++KM L L ++N + QAE D AEE+C Q+ + L K+K + L+ E
Sbjct: 875 LEEKMVSL-LQEKNDLQLQVQAEQDNLNDAEERCDQLIKNKIQLEAKVKEMTERLEDEEE 933
Query: 254 NLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAADA 433
+ + S+ K D+ L + + EKH ++ ++ E+ A
Sbjct: 934 MNAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNL------TEEMAGL 987
Query: 434 TQRRTKVTK-TRALYESEKMVIHDKQLAEDK 523
+ K+TK +AL E+ + + D Q EDK
Sbjct: 988 DEIIAKLTKEKKALQEAHQQALDDLQAEEDK 1018
Score = 34.3 bits (77), Expect = 0.050
Identities = 30/165 (18%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Frame = +2
Query: 80 KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYSENL 259
+K+M +K + D E++E+ +K EEK + +E L +++ +D NL
Sbjct: 848 EKEMANMKEEFGRVKDALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQD-------NL 900
Query: 260 KDAQE*LELSYMKASDSKGDVAALNQRIQLPQD-------EKHRSQERLSTALPNLEEAE 418
DA+E + + V + +R++ ++ +K + ++ S ++++ E
Sbjct: 901 NDAEERCDQLIKNKIQLEAKVKEMTERLEDEEEMNAELTAKKRKLEDECSELKKDIDDLE 960
Query: 419 QAADATQRRTKVTKTRALYESEKMVIHDK---QLAEDKSTADDAY 544
++ T+ + +E+M D+ +L ++K +A+
Sbjct: 961 LTLAKVEKEKHATENKVKNLTEEMAGLDEIIAKLTKEKKALQEAH 1005
Score = 30.4 bits (67), Expect = 0.73
Identities = 41/143 (28%), Positives = 71/143 (48%), Gaps = 2/143 (1%)
Frame = +2
Query: 68 MEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDL 244
+E K+K++ LKL +E+ +D E+DK EEK K+ +++ + K+ EDE L
Sbjct: 1050 LERAKRKLEGDLKLTQESIMD----LENDKLQLEEKLKKKEFDISQQNSKI---EDEQAL 1102
Query: 245 YSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNL-EEAEQ 421
+ K +E + + + + ++ A +R + EK RS LS L + E E+
Sbjct: 1103 ALQLQKKLKE----NQARIEELEEELEA--ERTARAKVEKLRSD--LSRELEEISERLEE 1154
Query: 422 AADATQRRTKVTKTRALYESEKM 490
A AT + ++ K R E +KM
Sbjct: 1155 AGGATSVQIEMNKKREA-EFQKM 1176
>gi|9910570|ref|NP_064322.1| (NM_019938) polyamine modulated factor
1 binding protein 1; sperm tail associated protein [Mus
musculus]
Length = 1022
Score = 40.0 bits (92), Expect = 0.001
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 13/164 (7%)
Frame = +2
Query: 71 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLYS 250
EA++ ++Q LK E A ++ + ++ + ++E+ L H+K++ +
Sbjct: 472 EALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKE 531
Query: 251 ENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTA-------LPNLE 409
E +KD Q L ++S + + QR+Q E Q RLS A L+
Sbjct: 532 EVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLD 591
Query: 410 EAEQAADATQRRTKVTK------TRALYESEKMVIHDKQLAEDK 523
E E+ D T+V++ T ++ + E+ ++ K L E+K
Sbjct: 592 EDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEK 635
Score = 30.4 bits (67), Expect = 0.73
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Frame = +2
Query: 68 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 247
++ +KKK+ L+ + E + + + ++ +L LH+ K EDE+ LY
Sbjct: 97 LQQLKKKLLTLQQELEFRTQELQASYCSLLQYQSILEKQTSDLLVLHRHCKLKEDEVILY 156
Query: 248 SENL----KDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEA 415
E + K E L L+ + + + + +L + + L +D + T+L N+E
Sbjct: 157 EEEMGNHSKSTGEKLHLAQEQLALAGDKILSLERSLNLYRD-------KYQTSLSNIELL 209
Query: 416 E 418
E
Sbjct: 210 E 210
Score = 28.9 bits (63), Expect = 2.1
Identities = 30/143 (20%), Positives = 57/143 (38%), Gaps = 6/143 (4%)
Frame = +2
Query: 65 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDL 244
A E + +K + D A+++ QA S+ K+ +Q E L EDE+
Sbjct: 746 AYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQL-------EDEIAA 798
Query: 245 YSENLKDAQE*LELSYMKASDSKGDVAALNQRIQ------LPQDEKHRSQERLSTALPNL 406
Y E +K L+ S+ +V +++++ L +H+S ++ A +
Sbjct: 799 YEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQ 858
Query: 407 EEAEQAADATQRRTKVTKTRALY 475
Q AT R + + + Y
Sbjct: 859 LREFQEEMATLRESLLADEKEPY 881
>gi|9507021|ref|NP_062273.1| (NM_019400) rabaptin 5; neurocrescin;
RAB5 effector protein [Mus musculus]
Length = 862
Score = 38.5 bits (88), Expect = 0.003
Identities = 31/144 (21%), Positives = 68/144 (46%), Gaps = 1/144 (0%)
Frame = +2
Query: 107 DKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDEL-DLYSENLKDAQE*LE 283
++EN + ++A+ D + + +E+ L KL ED++ +L + +K+ LE
Sbjct: 166 EEENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVKELNHYLE 225
Query: 284 LSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAADATQRRTKVTKT 463
+D + VA LN + + Q++ + ++ L LE+ Q + + +
Sbjct: 226 AEKSCRTDLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKAND 285
Query: 464 RALYESEKMVIHDKQLAEDKSTAD 535
+ L ES+++++ D Q E T++
Sbjct: 286 QFL-ESQRLLMRDMQRMEIVLTSE 308
>gi|6679671|ref|NP_031969.1| (NM_007943) epidermal growth factor
receptor pathway substrate 15; epidermal growth factor
pathway substrate 15 [Mus musculus]
Length = 897
Score = 38.1 bits (87), Expect = 0.003
Identities = 31/128 (24%), Positives = 64/128 (49%), Gaps = 4/128 (3%)
Frame = +2
Query: 68 MEAIKKKMQML--KLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELD 241
++A K+++Q L +LD++ A Q E + +KC + + ++ L ++ E ++
Sbjct: 387 LQAQKQQVQELLGELDEQKA-----QLEEQLQEVRKKCAEEAQLISSLKAEITSQESQIS 441
Query: 242 LYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKH--RSQERLSTALPNLEEA 415
Y E L A+E ELS ++ ++ + + + + QL ++H SQ+ +S+ LE
Sbjct: 442 SYEEELLKARE--ELSRLQQETAQLEESVESGKAQLEPLQQHLQESQQEISSMQMRLEMK 499
Query: 416 EQAADATQ 439
+ D Q
Sbjct: 500 DLETDNNQ 507
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 7,155,815
Number of sequences in database: 15,330
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6245401
Number of Sequences: 15330
Number of extensions: 136315
Number of successful extensions: 789
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of query: 190
length of database: 7,155,815
effective HSP length: 44
effective length of query: 145
effective length of database: 6,481,295
effective search space: 939787775
effective search space used: 939787775
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)