Search to RefSeq (Human) database
Query= 20030826C-000863 (20030826C-000863) 20030826C-000863
(1171 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,804 sequences; 10,428,096 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4502899|ref|NP_001824.1| (NM_001833) clathrin, light polypept... 366 e-101
Alignment gi|6005993|ref|NP_009027.1| (NM_007096) clathrin, light polypept... 350 8e-97
Alignment gi|4502901|ref|NP_001825.1| (NM_001834) clathrin, light polypept... 243 1e-64
Alignment gi|6005995|ref|NP_009028.1| (NM_007097) clathrin, light polypept... 232 3e-61
Alignment gi|10835077|ref|NP_005074.1| (NM_005083) U2 small nuclear ribonu... 43 4e-04
Alignment gi|4827046|ref|NP_005080.1| (NM_005089) U2 small nuclear ribonuc... 39 0.007
Alignment gi|4506467|ref|NP_002897.1| (NM_002906) radixin [Homo sapiens] 38 0.009
Alignment gi|32698944|ref|NP_872367.1| (NM_182561) hypothetical protein FL... 36 0.034
Alignment gi|4505877|ref|NP_000436.1| (NM_000445) plectin 1, intermediate ... 36 0.034
Alignment gi|4505257|ref|NP_002435.1| (NM_002444) moesin [Homo sapiens] 36 0.045
>gi|4502899|ref|NP_001824.1| (NM_001833) clathrin, light polypeptide
A isoform a; clathrin light chain LCA [Homo sapiens]
Length = 218
Score = 366 bits (939), Expect = e-101
Identities = 192/218 (88%), Positives = 195/218 (89%), Gaps = 6/218 (2%)
Frame = +1
Query: 208 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 729
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 180
Query: 730 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 843
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 218
>gi|6005993|ref|NP_009027.1| (NM_007096) clathrin, light polypeptide
A isoform b; clathrin light chain LCA [Homo sapiens]
Length = 248
Score = 350 bits (898), Expect = 8e-97
Identities = 192/248 (77%), Positives = 195/248 (78%), Gaps = 36/248 (14%)
Frame = +1
Query: 208 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 675
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 676 ------------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 819
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
Sbjct: 181 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 240
Query: 820 LKQAPLVH 843
LKQAPLVH
Sbjct: 241 LKQAPLVH 248
>gi|4502901|ref|NP_001825.1| (NM_001834) clathrin, light polypeptide
isoform a; clathrin light chain LCB [Homo sapiens]
Length = 211
Score = 243 bits (620), Expect = 1e-64
Identities = 125/207 (60%), Positives = 148/207 (71%), Gaps = 1/207 (0%)
Frame = +1
Query: 220 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 396
D FG + G A EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPTSG 62
Query: 397 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 576
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 577 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 756
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182
Query: 757 FNPKSSKQAKDVSRMRSVLISLKQAPL 837
FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209
>gi|6005995|ref|NP_009028.1| (NM_007097) clathrin, light polypeptide
isoform b; clathrin light chain LCB [Homo sapiens]
Length = 229
Score = 232 bits (591), Expect = 3e-61
Identities = 125/225 (55%), Positives = 148/225 (65%), Gaps = 19/225 (8%)
Frame = +1
Query: 220 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 396
D FG + G A EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPTSG 62
Query: 397 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 576
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 577 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------AAEEAFVND 702
E EW+EKA K+LEEW RQ EQ++K K NNR A+EEAFV +
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKE 182
Query: 703 IEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 837
+E +PGTEWE+VA+LCDFNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 SKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPL 227
>gi|10835077|ref|NP_005074.1| (NM_005083) U2 small nuclear
ribonucleoprotein auxiliary factor, small
subunit-related protein 1 [Homo sapiens]
Length = 479
Score = 42.7 bits (99), Expect = 4e-04
Identities = 29/95 (30%), Positives = 46/95 (47%)
Frame = +1
Query: 499 QSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRA 678
+ + E+ +KW EEQ RK + +WKE+ KE EE +Q E+ +K +A +
Sbjct: 95 KEKEEAAKKWLEEQ----------ERKLKEQWKEQQRKEREEEEQKQQEKKEKEEAVQKM 144
Query: 679 AEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQA 783
++A ND+E S T W+ DF +A
Sbjct: 145 LDQA-ENDLENS---TTWQNPEPPVDFRVMEKDRA 175
>gi|4827046|ref|NP_005080.1| (NM_005089) U2 small nuclear
ribonucleoprotein auxiliary factor, small
subunit-related protein 2; U2AF35-related protein [Homo
sapiens]
Length = 482
Score = 38.5 bits (88), Expect = 0.007
Identities = 27/97 (27%), Positives = 47/97 (47%)
Frame = +1
Query: 493 RLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN 672
R++ E E K R+E+ ER K + +W+E+ KE EE ++ E+ +K +A
Sbjct: 87 RIKKEKEEAAKKRQEEQER---------KLKEQWEEQQRKEREEEEQKRQEKKEKEEALQ 137
Query: 673 RAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQA 783
+ ++A N++E GT W+ DF +A
Sbjct: 138 KMLDQA-ENELEN---GTTWQNPEPPVDFRVMEKDRA 170
>gi|4506467|ref|NP_002897.1| (NM_002906) radixin [Homo sapiens]
Length = 583
Score = 38.1 bits (87), Expect = 0.009
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +1
Query: 499 QSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIK--ELEEWYARQDEQLQKTKANN 672
+ E E I + +EE ERL+ ++ + K + E +E+ K EL++ R E+ ++ +
Sbjct: 334 EKEKERIEREKEELMERLKQIEEQTIKAQKELEEQTRKALELDQERKRAKEEAERLEKER 393
Query: 673 RAAEEA 690
RAAEEA
Sbjct: 394 RAAEEA 399
>gi|32698944|ref|NP_872367.1| (NM_182561) hypothetical protein
FLJ36144 [Homo sapiens]
Length = 650
Score = 36.2 bits (82), Expect = 0.034
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
Frame = +1
Query: 484 QVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWK----EKAIKELEEWYARQDEQL 651
Q RL+ + + +R+ +E E+ + + + QE E K E+ ++E EE RQ+E+L
Sbjct: 319 QEKRLREQEKELREQEKELREQKKLREQEEQMQEQEEKMWEQEEKMREQEEKMWRQEERL 378
Query: 652 QKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAK---DVSRMR 804
+ + R E+ + D EE WE+ RL + + +Q K V +MR
Sbjct: 379 WEQEKQMREQEQK-MRDQEERM----WEQDERLREKEERMREQEKMWEQVEKMR 427
Score = 34.3 bits (77), Expect = 0.13
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Frame = +1
Query: 484 QVDRLQSEPESIRK-----WREEQTERLEALDANSRKQEAE-WK-EKAIKELEEWYARQD 642
Q + L+ + + IRK WR+E ERL + R+QE + W+ EK ++E E+ Q+
Sbjct: 277 QEEELREQEKKIRKQEEKMWRQE--ERLREQEGKMREQEEKMWRQEKRLREQEKELREQE 334
Query: 643 EQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQ 780
++L++ K E+ + + EE WE+ ++ + K +Q
Sbjct: 335 KELREQKKLREQEEQ--MQEQEEKM----WEQEEKMREQEEKMWRQ 374
Score = 33.5 bits (75), Expect = 0.22
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +1
Query: 490 DRLQSEPESIRKWREEQTERLEALDANSRKQEAEW---KEKAIKELEEWYARQDEQLQKT 660
+++ + E +R+ ++ Q + + D + QE E +EK ++E EE Q+E++QK
Sbjct: 417 EKMWEQVEKMREEKKMQEQEKKTRDQEEKMQEEERIREREKKMREEEETMREQEEKMQKQ 476
Query: 661 KANNRAAEE 687
+ N EE
Sbjct: 477 EENMWEQEE 485
Score = 29.6 bits (65), Expect = 3.2
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 15/100 (15%)
Frame = +1
Query: 484 QVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWK-------EKAIKELEEWYARQD 642
Q +++ + E R W EQ ERL + R+QE W+ EK ++E E+ Q+
Sbjct: 388 QEQKMRDQEE--RMW--EQDERLREKEERMREQEKMWEQVEKMREEKKMQEQEKKTRDQE 443
Query: 643 EQLQ-----KTKANNRAAEEAFVNDIEESSPGTE---WER 738
E++Q + + EE + + EE E WE+
Sbjct: 444 EKMQEEERIREREKKMREEEETMREQEEKMQKQEENMWEQ 483
>gi|4505877|ref|NP_000436.1| (NM_000445) plectin 1, intermediate
filament binding protein 500kDa; plectin 1, intermediate
filament binding protein, 500kD [Homo sapiens]
Length = 4574
Score = 36.2 bits (82), Expect = 0.034
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Frame = +1
Query: 463 DSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIK---ELEEWYA 633
+ AAI + RL++E E K +E + ERL L + Q +E+A + ++EE A
Sbjct: 1864 EKLAAIGEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLA 1923
Query: 634 RQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAK---DVSRMR 804
QL+K + ++ V D E E +A F ++ +A+ ++ R+R
Sbjct: 1924 ----QLRKASDSELERQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELELGRIR 1979
Query: 805 S----VLISLKQAPL 837
S L S +QA L
Sbjct: 1980 SNAEDTLRSKEQAEL 1994
Score = 28.5 bits (62), Expect = 7.2
Identities = 32/127 (25%), Positives = 56/127 (43%), Gaps = 9/127 (7%)
Frame = +1
Query: 475 AISQVDRLQSEPESIRKWREEQTERLE-ALDANSRKQ-----EAEWKEKAIKELEEWYAR 636
A Q RLQ + E + + E+T+ + L+A ++Q EAE + + E+ AR
Sbjct: 2366 AQEQARRLQEDKEQMAQQLAEETQGFQRTLEAERQRQLEMSAEAERLKLRVAEMSRAQAR 2425
Query: 637 QDEQLQKTKANNRAAEEAFVNDIEESSPGTE---WERVARLCDFNPKSSKQAKDVSRMRS 807
+E Q+ + + AEE I E TE E+V + + + D R+R
Sbjct: 2426 AEEDAQRFR---KQAEE-----IGEKLHRTELATQEKVTLVQTLEIQRQQSDHDAERLRE 2477
Query: 808 VLISLKQ 828
+ L++
Sbjct: 2478 AIAELER 2484
>gi|4505257|ref|NP_002435.1| (NM_002444) moesin [Homo sapiens]
Length = 577
Score = 35.8 bits (81), Expect = 0.045
Identities = 21/66 (31%), Positives = 35/66 (52%), Gaps = 2/66 (3%)
Frame = +1
Query: 499 QSEPESIRKWREEQTERLEALDANSRK--QEAEWKEKAIKELEEWYARQDEQLQKTKANN 672
+ E E I + +EE ERL+ ++ ++K QE E + + ELE+ R + +K
Sbjct: 334 EKEKEKIEREKEELMERLKQIEEQTKKAQQELEEQTRRALELEQERKRAQSEAEKLAKER 393
Query: 673 RAAEEA 690
+ AEEA
Sbjct: 394 QEAEEA 399
Score = 31.2 bits (69), Expect = 1.1
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +1
Query: 493 RLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDE-QLQKTKAN 669
R QSE E + K R+E E EAL SR Q+ ++ A+ E+ E AR + ++ + K
Sbjct: 381 RAQSEAEKLAKERQEAEEAKEALLQASRDQKKTQEQLAL-EMAELTARISQLEMARQKKE 439
Query: 670 NRAAE 684
+ A E
Sbjct: 440 SEAVE 444
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Sep 13, 2003 12:13 AM
Number of letters in database: 10,428,096
Number of sequences in database: 19,804
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,280,955
Number of Sequences: 19804
Number of extensions: 471168
Number of successful extensions: 2417
Number of sequences better than 10.0: 139
Number of HSP's better than 10.0 without gapping: 1965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2384
length of database: 10,428,096
effective HSP length: 101
effective length of database: 8,427,892
effective search space used: 2427232896
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20030826C-000863 (20030826C-000863) 20030826C-000863
(1171 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
16,274 sequences; 7,609,334 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|7949023|ref|NP_058040.1| (NM_016760) clathrin, light polypept... 347 5e-96
Alignment gi|30794164|ref|NP_083146.1| (NM_028870) clathrin, light polypep... 240 9e-64
Alignment gi|6677699|ref|NP_033067.1| (NM_009041) radixin [Mus musculus] 38 0.006
Alignment gi|31560273|ref|NP_075617.2| (NM_023128) paralemmin [Mus musculus] 37 0.014
Alignment gi|6754750|ref|NP_034963.1| (NM_010833) moesin [Mus musculus] 35 0.042
Alignment gi|13384630|ref|NP_079561.1| (NM_025285) stathmin-like 2; superi... 35 0.055
Alignment gi|22203755|ref|NP_666312.1| (NM_146200) RIKEN cDNA 3230401O13 [... 33 0.21
Alignment gi|16716511|ref|NP_444434.1| (NM_053204) Rab6-interacting protei... 33 0.21
Alignment gi|7305295|ref|NP_038635.1| (NM_013607) myosin heavy chain 11, s... 33 0.27
Alignment gi|6677759|ref|NP_033097.1| (NM_009071) Rho-associated coiled-co... 33 0.27
>gi|7949023|ref|NP_058040.1| (NM_016760) clathrin, light polypeptide
(Lca) [Mus musculus]
Length = 235
Score = 347 bits (890), Expect = 5e-96
Identities = 188/236 (79%), Positives = 193/236 (81%), Gaps = 24/236 (10%)
Frame = +1
Query: 208 MADLDPFG----APAGPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFG AP GP+LGNGVAG EEDPAAAFLA +ESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGDPAGAPGGPALGNGVAGAGEEDPAAAFLAHEESEIAGIENDEAFAILDGGAP 60
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61 GRATRRAGGGP-DAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 119
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 675
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 120 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFYKQPFADVIGYV 179
Query: 676 AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 843
AAEEAFVNDI+ESSPGTEWERVA LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 180 AAEEAFVNDIDESSPGTEWERVAPLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 235
>gi|30794164|ref|NP_083146.1| (NM_028870) clathrin, light
polypeptide (Lcb) [Mus musculus]
Length = 211
Score = 240 bits (612), Expect = 9e-64
Identities = 123/207 (59%), Positives = 147/207 (70%), Gaps = 1/207 (0%)
Frame = +1
Query: 220 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 396
+ FG + G A EEDPAAAFLAQQESEIAGIEND F A
Sbjct: 3 EDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDPGFGAPAASQVASAQPGLASG 62
Query: 397 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 576
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMSTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASK 122
Query: 577 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 756
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182
Query: 757 FNPKSSKQAKDVSRMRSVLISLKQAPL 837
FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209
>gi|6677699|ref|NP_033067.1| (NM_009041) radixin [Mus musculus]
Length = 583
Score = 38.1 bits (87), Expect = 0.006
Identities = 23/66 (34%), Positives = 36/66 (53%), Gaps = 2/66 (3%)
Frame = +1
Query: 499 QSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIK--ELEEWYARQDEQLQKTKANN 672
+ E E I + +EE ERL ++ + K + E +E+ K ELE+ R E+ ++
Sbjct: 334 EKEKERIEREKEELMERLRQIEEQTVKAQKELEEQTRKALELEQERQRAKEEAERLDRER 393
Query: 673 RAAEEA 690
RAAEEA
Sbjct: 394 RAAEEA 399
>gi|31560273|ref|NP_075617.2| (NM_023128) paralemmin [Mus musculus]
Length = 383
Score = 37.0 bits (84), Expect = 0.014
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 18/137 (13%)
Frame = +1
Query: 481 SQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKE---LEEWYARQDE-- 645
SQ +RLQ+ E RK E +++R + D R+Q K KA++E LE + E
Sbjct: 10 SQQERLQAIAEKRRKQAEIESKRRQLED--DRRQLQYLKSKALRERWLLEGTPSSASEGD 67
Query: 646 -----QLQKTKANNRAAEEAF--------VNDIEESSPGTEWERVARLCDFNPKSSKQAK 786
Q+Q+ + R EE+ V + ES+P E A P+S+ AK
Sbjct: 68 EDIRKQMQEDEQKARGLEESITRLEKEIDVLEFGESAPAASKENSAAPSPGRPQSASPAK 127
Query: 787 DVSRMRSVLISLKQAPL 837
+ + + L++ +Q PL
Sbjct: 128 EEQKSET-LVNAQQTPL 143
>gi|6754750|ref|NP_034963.1| (NM_010833) moesin [Mus musculus]
Length = 566
Score = 35.4 bits (80), Expect = 0.042
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +1
Query: 490 DRLQSEPESIRKWREEQTERLEALDANSRK--QEAEWKEKAIKELEEWYARQDEQLQKTK 663
D + E E I + +EE E+L+ ++ ++K QE E + ++ ELE+ R + +K
Sbjct: 320 DVAEKEKEKIEREKEELMEKLKQIEEQTKKAQQELEEQTRSPLELEQERKRAQSEAEKLA 379
Query: 664 ANNRAAEEA 690
+ AEEA
Sbjct: 380 KERQEAEEA 388
Score = 31.6 bits (70), Expect = 0.61
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +1
Query: 493 RLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDE-QLQKTKAN 669
R QSE E + K R+E E EAL SR Q+ + +E+ E+ E AR + ++ + K
Sbjct: 370 RAQSEAEKLAKERQEAEEAKEALLQASRDQK-KTQEQLASEMAELTARISQLEMARKKKE 428
Query: 670 NRAAE 684
+ A E
Sbjct: 429 SEAVE 433
>gi|13384630|ref|NP_079561.1| (NM_025285) stathmin-like 2;
superiorcervical ganglia, neural specific 10 [Mus
musculus]
Length = 179
Score = 35.0 bits (79), Expect = 0.055
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Frame = +1
Query: 478 ISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQK 657
IS+ R + P+ EE ++LEA + + QEA+ +K+L E + E LQK
Sbjct: 64 ISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQ----VLKQLAEKREHEREVLQK 119
Query: 658 TKANN----RAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISL 822
N + AEE + +E+ E +A + + + + A +V R + + + L
Sbjct: 120 ALEENNNFSKMAEEKLILKMEQIKENRE-ANLAAIIERLQEKERHAAEVRRNKELQVEL 177
>gi|22203755|ref|NP_666312.1| (NM_146200) RIKEN cDNA 3230401O13 [Mus
musculus]
Length = 911
Score = 33.1 bits (74), Expect = 0.21
Identities = 29/118 (24%), Positives = 52/118 (43%), Gaps = 9/118 (7%)
Frame = +1
Query: 415 DGVMNGEYY---QESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQE 585
DGV N + QES+G + + + D SE +W T D++S ++E
Sbjct: 189 DGVGNTTFLKKKQESSGESRKFHKKMEDDDEDSEDSEDEEWDTSSTSS----DSDSEEEE 244
Query: 586 AEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAF------VNDIEESSPGTEWERV 741
+ A K L++ ++++ K A++ +++ EE + G EWERV
Sbjct: 245 GKQTVLASKFLKKAPTTEEDKKAAEKKREDKAKKKHDRKSKRLDEEEEDNEGGEWERV 302
>gi|16716511|ref|NP_444434.1| (NM_053204) Rab6-interacting protein 2
[Mus musculus]
Length = 1120
Score = 33.1 bits (74), Expect = 0.21
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 5/132 (3%)
Frame = +1
Query: 424 MNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA-----NSRKQEA 588
M + + ++ A+ DR+Q I ++++E ++ +D + E
Sbjct: 713 MESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEK 772
Query: 589 EWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPK 768
K+K I ELE +RQ + K AN + E+ +E+ E R D
Sbjct: 773 NDKDKKIAELESLTSRQVKDQNKKVANLKHKEQ-----VEKKKSAQMLEEARRREDSLSD 827
Query: 769 SSKQAKDVSRMR 804
SS+Q +D R +
Sbjct: 828 SSQQLQDSLRKK 839
>gi|7305295|ref|NP_038635.1| (NM_013607) myosin heavy chain 11, smooth
muscle [Mus musculus]
Length = 1938
Score = 32.7 bits (73), Expect = 0.27
Identities = 34/137 (24%), Positives = 65/137 (46%), Gaps = 15/137 (10%)
Frame = +1
Query: 442 QESNGPTDSYAAISQVD-RLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKEL 618
++ T+ YA ++ RL ++ + + + E RLE + ++ +AE K+ A + L
Sbjct: 894 EQLQAETELYAESEEMRVRLAAKKQELEEILHEMEARLEEEEDRRQQLQAERKKMAQQML 953
Query: 619 -------EEWYARQDEQLQKTKAN---NRAAEEAFVNDIEESSPGTE----WERVARLCD 756
EE ARQ QL+K A + ++ V D + S E ERV+ L
Sbjct: 954 DLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSKLSKERKLLEERVSDLTT 1013
Query: 757 FNPKSSKQAKDVSRMRS 807
+ ++AK++++++S
Sbjct: 1014 NLAEEEEKAKNLTKLKS 1030
>gi|6677759|ref|NP_033097.1| (NM_009071) Rho-associated coiled-coil
forming kinase 1 [Mus musculus]
Length = 1354
Score = 32.7 bits (73), Expect = 0.27
Identities = 24/109 (22%), Positives = 51/109 (46%)
Frame = +1
Query: 490 DRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKAN 669
+R+++ E + +EE+ L+A + E K +A+ +L E R+D ++ + KAN
Sbjct: 964 ERMRTAEEEYKLKKEEEINNLKAAFEKNISTERTLKTQAVNKLAEIMNRKDFKIDRKKAN 1023
Query: 670 NRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLI 816
+ + E+ + + E FN K K+++ M++ L+
Sbjct: 1024 TQDLRKK-----EKENRKLQLELNQEREKFNQMVVKHQKELNDMQAQLV 1067
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Sep 13, 2003 12:13 AM
Number of letters in database: 7,609,334
Number of sequences in database: 16,274
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,626,726
Number of Sequences: 16274
Number of extensions: 330175
Number of successful extensions: 1577
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1562
length of database: 7,609,334
effective HSP length: 99
effective length of database: 5,998,208
effective search space used: 1739480320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)