Search to RefSeq (Human) database
Query= 20030826C-001381 (20030826C-001381) 20030826C-001381
(1308 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,804 sequences; 10,428,096 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|8923911|ref|NP_061167.1| (NM_018697) LanC lantibiotic synthet... 572 e-163
Alignment gi|5174445|ref|NP_006046.1| (NM_006055) lanthionine synthetase C... 305 3e-83
Alignment gi|34222203|ref|NP_694964.2| (NM_153232) hypothetical protein MG... 34 0.20
Alignment gi|4502951|ref|NP_000081.1| (NM_000090) alpha 1 type III collage... 33 0.26
Alignment gi|14165442|ref|NP_112730.1| (NM_031362) alpha 3 type IV collage... 33 0.33
Alignment gi|14165446|ref|NP_112732.1| (NM_031364) alpha 3 type IV collage... 33 0.33
Alignment gi|14165444|ref|NP_112731.1| (NM_031363) alpha 3 type IV collage... 33 0.33
Alignment gi|14165448|ref|NP_112733.1| (NM_031365) alpha 3 type IV collage... 33 0.33
Alignment gi|14165450|ref|NP_112734.1| (NM_031366) alpha 3 type IV collage... 33 0.33
Alignment gi|10835113|ref|NP_000082.1| (NM_000091) alpha 3 type IV collage... 33 0.33
>gi|8923911|ref|NP_061167.1| (NM_018697) LanC lantibiotic synthetase
component C-like 2; testis-specific adriamycin
sensitivity protein; LanC (bacterial lantibiotic
synthetase component C)-like 2; G protein-coupled
receptor 69B [Homo sapiens]
Length = 450
Score = 572 bits (1474), Expect = e-163
Identities = 281/344 (81%), Positives = 300/344 (86%), Gaps = 5/344 (1%)
Frame = +1
Query: 292 MGETISRRLWFQGDWDAEMEERAFPNPFPDYXXXXXXXXXXXXXXXXXL-----TPEELG 456
MGET+S+RL +AEMEERAF NPFPDY T +E G
Sbjct: 1 MGETMSKRLKLHLGGEAEMEERAFVNPFPDYEAAAGALLASGAAEETGCVRPPATTDEPG 60
Query: 457 LPFHSDGKIIHNFTRRIQSKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVT 636
LPFH DGKIIHNF RRIQ+KIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVT
Sbjct: 61 LPFHQDGKIIHNFIRRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVT 120
Query: 637 CDQNYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQ 816
CDQ YLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAV+YHKL+SD ESQEC+TKLLQ
Sbjct: 121 CDQTYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVIYHKLRSDCESQECVTKLLQ 180
Query: 817 LQRTIVCRDSDLPDELLFGRAGYLYALLYVNTEMDPGAVCESAIKEVVDAIIVSGKTLSK 996
LQR++VC++SDLPDELL+GRAGYLYALLY+NTE+ PG VCESAIKEVV+AII SGKTLS+
Sbjct: 181 LQRSVVCQESDLPDELLYGRAGYLYALLYLNTEIGPGTVCESAIKEVVNAIIESGKTLSR 240
Query: 997 EERKAERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKR 1176
EERK ERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDY+RHK+
Sbjct: 241 EERKTERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYVRHKK 300
Query: 1177 FRSRNYPSSLSNETDRLVHWLHGAPGVIHTLMQAYKVVKEEKYL 1308
FRS NYPSSLSNETDRLVHW HGAPGVIH LMQAYKV KEEKYL
Sbjct: 301 FRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYL 344
>gi|5174445|ref|NP_006046.1| (NM_006055) lanthionine synthetase C-like
protein 1; G protein-coupled receptor 69A; LanC
(bacterial lantibiotic synthetase component C)-like 1;
LanC (bacterial lantibiotic synthetase component) [Homo
sapiens]
Length = 399
Score = 305 bits (782), Expect = 3e-83
Identities = 149/321 (46%), Positives = 212/321 (65%)
Frame = +1
Query: 346 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 525
M +RAFPNP+ DY F + G++ F++R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAEGY------------------FDAAGRLTPEFSQRLTNKIRE 42
Query: 526 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 705
LLQQME GLK+ADP D + YTGW GIA+LYL LY V D YL + YVK++L L R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKR 102
Query: 706 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 885
+TFLCGDAGPLAV AV+YHK+ ++ ++++CIT+L+ L + D P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKI----DPHAPNEMLYGRIGY 158
Query: 886 LYALLYVNTEMDPGAVCESAIKEVVDAIIVSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1065
+YALL+VN + +S I+++ + I+ SG+ L+++ + PL+Y+W+++ YVGAA
Sbjct: 159 IYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAA 218
Query: 1066 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSRNYPSSLSNETDRLVHWLHG 1245
HG+AGIYY LMQP+ +V Q L +VKPS+DY+ +F S NYP + + D LVHW HG
Sbjct: 219 HGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHG 278
Query: 1246 APGVIHTLMQAYKVVKEEKYL 1308
APGVI+ L+QAYKV +EEKYL
Sbjct: 279 APGVIYMLIQAYKVFREEKYL 299
>gi|34222203|ref|NP_694964.2| (NM_153232) hypothetical protein
MGC20452 [Homo sapiens]
Length = 174
Score = 33.9 bits (76), Expect = 0.20
Identities = 30/75 (40%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = -2
Query: 293 MSAARPALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPAP---P 123
M+AAR A AAR A L R A AG R SP AA + A G P P
Sbjct: 1 MAAARAAPAAAARGAPVAAAALARAAAAG-RESPAAAAAREARMAEVARLLGEPVDEEGP 59
Query: 122 RLRTGPRGGCGGIAA 78
R R G GG+AA
Sbjct: 60 EGRPRSRHGNGGLAA 74
>gi|4502951|ref|NP_000081.1| (NM_000090) alpha 1 type III collagen;
Collagen III, alpha-1 polypeptide; collagen, fetal [Homo
sapiens]
Length = 1466
Score = 33.5 bits (75), Expect = 0.26
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Frame = -2
Query: 215 PAGPRASPGK--------AAGAQRCEAGTRGCGGRPAPPRLRTGPRGGCG 90
P GPR +PG+ AAGA R G RG G+P PP GP G G
Sbjct: 298 PMGPRGAPGERGRPGLPGAAGA-RGNDGARGSDGQPGPP----GPPGTAG 342
Score = 32.3 bits (72), Expect = 0.57
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = -2
Query: 242 AGTNLRRGAPAGP--RASPGKAAG----AQRCEAGTRGCGGRPAPPRLRTGPRGGCG 90
AG R G P GP R PG G + G++G GRP PP +GPRG G
Sbjct: 521 AGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPG-PSGPRGQPG 576
Score = 31.2 bits (69), Expect = 1.3
Identities = 17/46 (36%), Positives = 22/46 (46%)
Frame = -2
Query: 215 PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRGGCGGIAA 78
P GPR + G +R G+ G G+P PP P CGG+ A
Sbjct: 1162 PPGPRGNRG-----ERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGA 1202
Score = 28.9 bits (63), Expect = 6.3
Identities = 24/69 (34%), Positives = 26/69 (36%)
Frame = -2
Query: 296 PMSAARPALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRL 117
P A P G A G RG+P GP A+ A R G G G P PP
Sbjct: 839 PGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGA---RGLPGPPGSNGNPGPP-- 893
Query: 116 RTGPRGGCG 90
GP G G
Sbjct: 894 --GPSGSPG 900
Score = 28.5 bits (62), Expect = 8.2
Identities = 20/63 (31%), Positives = 22/63 (34%)
Frame = -2
Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRG 99
P L G A R G G P + GK + G G G P PP GP G
Sbjct: 1001 PGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPP----GPVG 1056
Query: 98 GCG 90
G
Sbjct: 1057 PAG 1059
>gi|14165442|ref|NP_112730.1| (NM_031362) alpha 3 type IV collagen
isoform 2, precursor; Goodpasture antigen; collagen IV,
alpha-3 polypeptide [Homo sapiens]
Length = 1642
Score = 33.1 bits (74), Expect = 0.33
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -2
Query: 215 PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRG 99
PAGP PG + GT+G G P PP GPRG
Sbjct: 609 PAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPG-EAGPRG 646
Score = 32.3 bits (72), Expect = 0.57
Identities = 26/73 (35%), Positives = 30/73 (40%), Gaps = 7/73 (9%)
Frame = -2
Query: 287 AARPALRGAARYGERAGTNLRRGAPA----GPRASPGKAAGAQRCEAGTRGCGGRPAPPR 120
++RP LRGA + G+ RG P G SPG A G G G P PP
Sbjct: 385 SSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAG-----SPGLPGSPGPPGPPG 439
Query: 119 ---LRTGPRGGCG 90
R GP G G
Sbjct: 440 DIVFRKGPPGDHG 452
Score = 28.9 bits (63), Expect = 6.3
Identities = 23/71 (32%), Positives = 27/71 (37%), Gaps = 8/71 (11%)
Frame = -2
Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPA--------PP 123
P L G G + RG P P PG+ RC G RG G P
Sbjct: 773 PGLPGLPGTPGNEGLDGPRGDPGQP-GPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGR 831
Query: 122 RLRTGPRGGCG 90
R +TGP+G G
Sbjct: 832 RGKTGPKGDPG 842
>gi|14165446|ref|NP_112732.1| (NM_031364) alpha 3 type IV collagen
isoform 3, precursor; Goodpasture antigen; collagen IV,
alpha-3 polypeptide [Homo sapiens]
Length = 1498
Score = 33.1 bits (74), Expect = 0.33
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -2
Query: 215 PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRG 99
PAGP PG + GT+G G P PP GPRG
Sbjct: 609 PAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPG-EAGPRG 646
Score = 32.3 bits (72), Expect = 0.57
Identities = 26/73 (35%), Positives = 30/73 (40%), Gaps = 7/73 (9%)
Frame = -2
Query: 287 AARPALRGAARYGERAGTNLRRGAPA----GPRASPGKAAGAQRCEAGTRGCGGRPAPPR 120
++RP LRGA + G+ RG P G SPG A G G G P PP
Sbjct: 385 SSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAG-----SPGLPGSPGPPGPPG 439
Query: 119 ---LRTGPRGGCG 90
R GP G G
Sbjct: 440 DIVFRKGPPGDHG 452
Score = 28.9 bits (63), Expect = 6.3
Identities = 23/71 (32%), Positives = 27/71 (37%), Gaps = 8/71 (11%)
Frame = -2
Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPA--------PP 123
P L G G + RG P P PG+ RC G RG G P
Sbjct: 773 PGLPGLPGTPGNEGLDGPRGDPGQP-GPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGR 831
Query: 122 RLRTGPRGGCG 90
R +TGP+G G
Sbjct: 832 RGKTGPKGDPG 842
>gi|14165444|ref|NP_112731.1| (NM_031363) alpha 3 type IV collagen
isoform 3, precursor; Goodpasture antigen; collagen IV,
alpha-3 polypeptide [Homo sapiens]
Length = 1498
Score = 33.1 bits (74), Expect = 0.33
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -2
Query: 215 PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRG 99
PAGP PG + GT+G G P PP GPRG
Sbjct: 609 PAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPG-EAGPRG 646
Score = 32.3 bits (72), Expect = 0.57
Identities = 26/73 (35%), Positives = 30/73 (40%), Gaps = 7/73 (9%)
Frame = -2
Query: 287 AARPALRGAARYGERAGTNLRRGAPA----GPRASPGKAAGAQRCEAGTRGCGGRPAPPR 120
++RP LRGA + G+ RG P G SPG A G G G P PP
Sbjct: 385 SSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAG-----SPGLPGSPGPPGPPG 439
Query: 119 ---LRTGPRGGCG 90
R GP G G
Sbjct: 440 DIVFRKGPPGDHG 452
Score = 28.9 bits (63), Expect = 6.3
Identities = 23/71 (32%), Positives = 27/71 (37%), Gaps = 8/71 (11%)
Frame = -2
Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPA--------PP 123
P L G G + RG P P PG+ RC G RG G P
Sbjct: 773 PGLPGLPGTPGNEGLDGPRGDPGQP-GPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGR 831
Query: 122 RLRTGPRGGCG 90
R +TGP+G G
Sbjct: 832 RGKTGPKGDPG 842
>gi|14165448|ref|NP_112733.1| (NM_031365) alpha 3 type IV collagen
isoform 4, precursor; Goodpasture antigen; collagen IV,
alpha-3 polypeptide [Homo sapiens]
Length = 1494
Score = 33.1 bits (74), Expect = 0.33
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -2
Query: 215 PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRG 99
PAGP PG + GT+G G P PP GPRG
Sbjct: 609 PAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPG-EAGPRG 646
Score = 32.3 bits (72), Expect = 0.57
Identities = 26/73 (35%), Positives = 30/73 (40%), Gaps = 7/73 (9%)
Frame = -2
Query: 287 AARPALRGAARYGERAGTNLRRGAPA----GPRASPGKAAGAQRCEAGTRGCGGRPAPPR 120
++RP LRGA + G+ RG P G SPG A G G G P PP
Sbjct: 385 SSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAG-----SPGLPGSPGPPGPPG 439
Query: 119 ---LRTGPRGGCG 90
R GP G G
Sbjct: 440 DIVFRKGPPGDHG 452
Score = 28.9 bits (63), Expect = 6.3
Identities = 23/71 (32%), Positives = 27/71 (37%), Gaps = 8/71 (11%)
Frame = -2
Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPA--------PP 123
P L G G + RG P P PG+ RC G RG G P
Sbjct: 773 PGLPGLPGTPGNEGLDGPRGDPGQP-GPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGR 831
Query: 122 RLRTGPRGGCG 90
R +TGP+G G
Sbjct: 832 RGKTGPKGDPG 842
>gi|14165450|ref|NP_112734.1| (NM_031366) alpha 3 type IV collagen
isoform 5, precursor; Goodpasture antigen; collagen IV,
alpha-3 polypeptide [Homo sapiens]
Length = 1424
Score = 33.1 bits (74), Expect = 0.33
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -2
Query: 215 PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRG 99
PAGP PG + GT+G G P PP GPRG
Sbjct: 609 PAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPG-EAGPRG 646
Score = 32.3 bits (72), Expect = 0.57
Identities = 26/73 (35%), Positives = 30/73 (40%), Gaps = 7/73 (9%)
Frame = -2
Query: 287 AARPALRGAARYGERAGTNLRRGAPA----GPRASPGKAAGAQRCEAGTRGCGGRPAPPR 120
++RP LRGA + G+ RG P G SPG A G G G P PP
Sbjct: 385 SSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAG-----SPGLPGSPGPPGPPG 439
Query: 119 ---LRTGPRGGCG 90
R GP G G
Sbjct: 440 DIVFRKGPPGDHG 452
Score = 28.9 bits (63), Expect = 6.3
Identities = 23/71 (32%), Positives = 27/71 (37%), Gaps = 8/71 (11%)
Frame = -2
Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPA--------PP 123
P L G G + RG P P PG+ RC G RG G P
Sbjct: 773 PGLPGLPGTPGNEGLDGPRGDPGQP-GPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGR 831
Query: 122 RLRTGPRGGCG 90
R +TGP+G G
Sbjct: 832 RGKTGPKGDPG 842
>gi|10835113|ref|NP_000082.1| (NM_000091) alpha 3 type IV collagen
isoform 1, precursor; Goodpasture antigen; collagen IV,
alpha-3 polypeptide [Homo sapiens]
Length = 1670
Score = 33.1 bits (74), Expect = 0.33
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -2
Query: 215 PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRG 99
PAGP PG + GT+G G P PP GPRG
Sbjct: 609 PAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPG-EAGPRG 646
Score = 32.3 bits (72), Expect = 0.57
Identities = 26/73 (35%), Positives = 30/73 (40%), Gaps = 7/73 (9%)
Frame = -2
Query: 287 AARPALRGAARYGERAGTNLRRGAPA----GPRASPGKAAGAQRCEAGTRGCGGRPAPPR 120
++RP LRGA + G+ RG P G SPG A G G G P PP
Sbjct: 385 SSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAG-----SPGLPGSPGPPGPPG 439
Query: 119 ---LRTGPRGGCG 90
R GP G G
Sbjct: 440 DIVFRKGPPGDHG 452
Score = 28.9 bits (63), Expect = 6.3
Identities = 23/71 (32%), Positives = 27/71 (37%), Gaps = 8/71 (11%)
Frame = -2
Query: 278 PALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPA--------PP 123
P L G G + RG P P PG+ RC G RG G P
Sbjct: 773 PGLPGLPGTPGNEGLDGPRGDPGQP-GPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGR 831
Query: 122 RLRTGPRGGCG 90
R +TGP+G G
Sbjct: 832 RGKTGPKGDPG 842
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Sep 13, 2003 12:13 AM
Number of letters in database: 10,428,096
Number of sequences in database: 19,804
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,707,292
Number of Sequences: 19804
Number of extensions: 842513
Number of successful extensions: 5026
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 3159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4960
length of database: 10,428,096
effective HSP length: 102
effective length of database: 8,408,088
effective search space used: 2799893304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20030826C-001381 (20030826C-001381) 20030826C-001381
(1308 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
16,274 sequences; 7,609,334 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|19526936|ref|NP_598498.1| (NM_133737) RIKEN cDNA 1700003F10 [... 544 e-155
Alignment gi|21489937|ref|NP_067270.1| (NM_021295) LanC (bacterial lantibi... 310 8e-85
Alignment gi|27734148|ref|NP_775590.1| (NM_173414) RIKEN cDNA 6030463G20 [... 105 3e-23
Alignment gi|33468851|ref|NP_031762.1| (NM_007736) procollagen, type IV, a... 37 0.017
Alignment gi|31543172|ref|NP_659162.2| (NM_144913) DNA segment, Chr 5, Way... 35 0.082
Alignment gi|33859526|ref|NP_034060.1| (NM_009930) procollagen, type III, ... 33 0.18
Alignment gi|34328045|ref|NP_031761.1| (NM_007735) procollagen, type IV, a... 33 0.24
Alignment gi|6680972|ref|NP_031764.1| (NM_007738) procollagen, type VII, a... 33 0.31
Alignment gi|6678581|ref|NP_033541.1| (NM_009515) Wiskott-Aldrich syndrome... 32 0.41
Alignment gi|6678069|ref|NP_033259.1| (NM_009233) SRY (sex determining reg... 32 0.41
>gi|19526936|ref|NP_598498.1| (NM_133737) RIKEN cDNA 1700003F10 [Mus
musculus]
Length = 450
Score = 544 bits (1402), Expect = e-155
Identities = 270/345 (78%), Positives = 297/345 (85%), Gaps = 6/345 (1%)
Frame = +1
Query: 292 MGETISRRLWFQGDWDAEMEERAFPNPFPDYXXXXXXXXXXXXXXXXX------LTPEEL 453
MGET+S+RL F +AEMEER+FPNPFPDY T E+
Sbjct: 1 MGETMSKRLKFHLG-EAEMEERSFPNPFPDYEAAASAAGLAAGSAEETGRVCPLPTTEDP 59
Query: 454 GLPFHSDGKIIHNFTRRIQSKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRV 633
GLPFH +GKI+ NF +RIQ+KIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRV
Sbjct: 60 GLPFHPNGKIVPNFIKRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRV 119
Query: 634 TCDQNYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLL 813
T DQ YLLRSLDYVKRTLRNL+GRRVTFLCGDAGPLAVGAV+YHKLKS+ ESQECITKLL
Sbjct: 120 TGDQTYLLRSLDYVKRTLRNLSGRRVTFLCGDAGPLAVGAVIYHKLKSECESQECITKLL 179
Query: 814 QLQRTIVCRDSDLPDELLFGRAGYLYALLYVNTEMDPGAVCESAIKEVVDAIIVSGKTLS 993
Q+ RTIVC++S+LPDELL+GRAGYLYALLY+NTE+ PG V E+AIKEVV AII SGK+LS
Sbjct: 180 QMHRTIVCQESELPDELLYGRAGYLYALLYLNTEIGPGTVGETAIKEVVSAIIESGKSLS 239
Query: 994 KEERKAERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHK 1173
+EERK+ERCPLLYQWHRKQYVGAAHGMAGIYYMLMQP AKVDQETLTEMVKPSIDY+RHK
Sbjct: 240 REERKSERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPEAKVDQETLTEMVKPSIDYVRHK 299
Query: 1174 RFRSRNYPSSLSNETDRLVHWLHGAPGVIHTLMQAYKVVKEEKYL 1308
+FRS NYPSSLSNETDRLVHW HGAPGVIH L+QAY+V KEEKYL
Sbjct: 300 KFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLLQAYQVFKEEKYL 344
>gi|21489937|ref|NP_067270.1| (NM_021295) LanC (bacterial lantibiotic
synthetase component C)-like; G protein-coupled receptor
69; G protein-coupled receptor 69A; LanC-like protein 1
[Mus musculus]
Length = 399
Score = 310 bits (794), Expect = 8e-85
Identities = 152/321 (47%), Positives = 215/321 (66%)
Frame = +1
Query: 346 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 525
M +RAFPNP+ DY F S G++ F+ R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAENY------------------FDSTGRLTPEFSHRLTNKIRE 42
Query: 526 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 705
LLQQME GLK+ADP D + YTGW GIA+LYL L+ V D YL + YVK++L L+ R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLHNVFGDPAYLQMAHSYVKQSLNCLSRR 102
Query: 706 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 885
+TFLCGDAGPLAV AV+YHK+ S+ +++ECIT+L+ L + D +P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNSEKQAEECITRLIHLNKI----DPHVPNEMLYGRIGY 158
Query: 886 LYALLYVNTEMDPGAVCESAIKEVVDAIIVSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1065
++ALL+VN + +S I+++ + I+ SG+ LS++ A + PL+Y+W+++ YVGAA
Sbjct: 159 IFALLFVNKNFGEEKIPQSHIQQICENILTSGENLSRKRNLAAKSPLMYEWYQEYYVGAA 218
Query: 1066 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSRNYPSSLSNETDRLVHWLHG 1245
HG+AGIYY LMQP+ +V+Q L +VKPS+D++ +F S NYP L + D LVHW HG
Sbjct: 219 HGLAGIYYYLMQPSLQVNQGKLHSLVKPSVDFVCRLKFPSGNYPPCLDDTRDLLVHWCHG 278
Query: 1246 APGVIHTLMQAYKVVKEEKYL 1308
APGVI+ L+QAYKV KEE+YL
Sbjct: 279 APGVIYMLIQAYKVFKEERYL 299
>gi|27734148|ref|NP_775590.1| (NM_173414) RIKEN cDNA 6030463G20 [Mus
musculus]
Length = 420
Score = 105 bits (263), Expect = 3e-23
Identities = 71/208 (34%), Positives = 108/208 (51%), Gaps = 7/208 (3%)
Frame = +1
Query: 706 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDL----PDELLFG 873
R FL G AG AV +VYH L Q + K L VC DEL G
Sbjct: 117 RAAFLLGGAGVYAVATLVYHALGRPDYVQP-LGKFRAL--CAVCAPVSFLDCGSDELFVG 173
Query: 874 RAGYLYALLYVNTEMDPGAVCESAIKEVVDAIIVSGKTLSKEERKAERCPLLYQWHRKQY 1053
RAGYL A L + ++ + + IK + AI+ SGK + ++RK PL+Y ++ +Y
Sbjct: 174 RAGYLCAALVLKQKLAQEVLTPTQIKAICQAILDSGKQYALKKRKP--FPLMYSYYGTEY 231
Query: 1054 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSRNYPSSLSNETDR--- 1224
+GAAHG++ I ML+ + E+V+ S+D++ + ++ N+P L +R
Sbjct: 232 LGAAHGLSSILQMLLSYQEHLKPSD-RELVRQSVDFLMEQE-QNCNWPPELGETIERENE 289
Query: 1225 LVHWLHGAPGVIHTLMQAYKVVKEEKYL 1308
LVHW HGAPG+ + +AY + K+ +YL
Sbjct: 290 LVHWCHGAPGIAYLFAKAYLISKKPQYL 317
>gi|33468851|ref|NP_031762.1| (NM_007736) procollagen, type IV, alpha
5 [Mus musculus]
Length = 1691
Score = 37.0 bits (84), Expect = 0.017
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Frame = -2
Query: 215 PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLR-----TGPRG--GCGGI 84
P GP SPG+A + G +G GRP PP + GPRG G GGI
Sbjct: 1236 PPGPPGSPGQALEGPKGNPGPQGPPGRPGPPGFQGPPGTEGPRGPPGNGGI 1286
>gi|31543172|ref|NP_659162.2| (NM_144913) DNA segment, Chr 5, Wayne
State University 46, expressed [Mus musculus]
Length = 665
Score = 34.7 bits (78), Expect = 0.082
Identities = 30/92 (32%), Positives = 35/92 (37%), Gaps = 5/92 (5%)
Frame = -2
Query: 347 ISASQSPWNQSLRDMVSPMSAARPALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQR 168
+ + Q + LRD R GAA G G P G A+P +R
Sbjct: 32 VQSHQEAASGELRDGTEHGPGPRAHSAGAAASGGGGPQAQAHGEPHGRAAAPADVGEERR 91
Query: 167 CEAGTRGCGGRPAPPRLRTG-----PRGGCGG 87
GT G PAPPR R G P GG GG
Sbjct: 92 GGGGTD--LGPPAPPRPRNGYQPHRPPGGGGG 121
>gi|33859526|ref|NP_034060.1| (NM_009930) procollagen, type III,
alpha 1; minisatellite 10w detected by probe MMS10 [Mus
musculus]
Length = 1464
Score = 33.5 bits (75), Expect = 0.18
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Frame = -2
Query: 215 PAGPRASPGK--------AAGAQRCEAGTRGCGGRPAPPRLRTGPRGGCG 90
P GPR +PG+ AAGA R G RG G+P PP GP G G
Sbjct: 297 PMGPRGAPGERGRPGLPGAAGA-RGNDGARGSDGQPGPP----GPPGTAG 341
Score = 32.3 bits (72), Expect = 0.41
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = -2
Query: 242 AGTNLRRGAPAGP--RASPGKAAG----AQRCEAGTRGCGGRPAPPRLRTGPRGGCG 90
AG R G P GP R PG G + G++G GRP PP +GPRG G
Sbjct: 520 AGEPGRDGTPGGPGIRGMPGSPGGPGNDGKPGPPGSQGESGRPGPPG-PSGPRGQPG 575
Score = 30.0 bits (66), Expect = 2.0
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = -2
Query: 215 PAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRGGCGGIAA 78
P GPR + G +R G+ G G+P PP P CGG AA
Sbjct: 1161 PPGPRGNRG-----ERGSEGSPGHPGQPGPPGPPGAPGPCCGGGAA 1201
>gi|34328045|ref|NP_031761.1| (NM_007735) procollagen, type IV, alpha
4 [Mus musculus]
Length = 1682
Score = 33.1 bits (74), Expect = 0.24
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -2
Query: 224 RGAPAGPRASPGKAAGAQRCEAGTRGCGGRPAP--PRLRTGPRGGCGGI 84
R P GP +PG+AA + G G G P P PR GP G G +
Sbjct: 1228 RPGPPGPAGAPGRAAKGDIPDPGPPGDRGPPGPDGPRGVPGPPGSPGNV 1276
Score = 31.2 bits (69), Expect = 0.91
Identities = 17/40 (42%), Positives = 18/40 (44%)
Frame = -2
Query: 209 GPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRGGCG 90
G R PG + G RG G P PP RTGP G G
Sbjct: 585 GERGDPGPRGDHKDAAPGERGLPGLPGPPG-RTGPEGPPG 623
Score = 28.5 bits (62), Expect = 5.9
Identities = 24/64 (37%), Positives = 28/64 (43%)
Frame = -2
Query: 281 RPALRGAARYGERAGTNLRRGAPAGPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPR 102
R L G GE G + RRG P SPG ++ + G GC G P PP GP
Sbjct: 1391 RRGLPGPGCKGE-PGPDGRRGQDGIP-GSPGPPG--RKGDTGEAGCPGAPGPP----GPT 1442
Query: 101 GGCG 90
G G
Sbjct: 1443 GDPG 1446
>gi|6680972|ref|NP_031764.1| (NM_007738) procollagen, type VII, alpha
1 [Mus musculus]
Length = 2944
Score = 32.7 bits (73), Expect = 0.31
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Frame = -2
Query: 215 PAGPRASPGKAAGAQRCEAGTRGCGGRPAP---PRLR-----TGPRGGCG 90
P GP PG+ CE G G G+P P P LR TGP+G G
Sbjct: 1432 PQGPAGRPGEKGEKGDCEDGGPGLPGQPGPPGEPGLRGAPGMTGPKGDRG 1481
Score = 29.6 bits (65), Expect = 2.7
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = -2
Query: 209 GPRASPGKAAGAQRCEAGTRGCGGRPAPPRLRTGPRGGCGG 87
G + +PG AGA E G +G G P PR G G GG
Sbjct: 2301 GEKGAPGDLAGALLGEPGAKGDRGLPG-PRGEKGEAGRAGG 2340
>gi|6678581|ref|NP_033541.1| (NM_009515) Wiskott-Aldrich syndrome
homolog; Wiskott-Aldrich syndrome protein [Mus musculus]
Length = 520
Score = 32.3 bits (72), Expect = 0.41
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 57 PQPRRPGGSDPATASPRARPEPGRGGAP 140
P P P G P +PR P PGRGG P
Sbjct: 358 PLPPVPMGGAPPPPTPRGPPPPGRGGPP 385
>gi|6678069|ref|NP_033259.1| (NM_009233) SRY (sex determining region
Y)-box 1 [Mus musculus]
Length = 391
Score = 32.3 bits (72), Expect = 0.41
Identities = 20/37 (54%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 23 PAGRSLLHRGDPATAAPGWQRSR-HSLPEGPSGAGAG 130
PAG GDPA AA +SR HSLP+ GAGAG
Sbjct: 349 PAGEG----GDPAAAAAAAAQSRLHSLPQHYQGAGAG 381
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Sep 13, 2003 12:13 AM
Number of letters in database: 7,609,334
Number of sequences in database: 16,274
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,196,479
Number of Sequences: 16274
Number of extensions: 575591
Number of successful extensions: 3296
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 2189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3251
length of database: 7,609,334
effective HSP length: 100
effective length of database: 5,981,934
effective search space used: 2003947890
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)