Search to RefSeq (Human) database
Query= 20030826C-001638 (20030826C-001638) 20030826C-001638
(904 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,804 sequences; 10,428,096 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|24234683|ref|NP_004642.2| (NM_004651) ubiquitin specific prot... 479 e-136
Alignment gi|14149627|ref|NP_006304.1| (NM_006313) ubiquitin specific prot... 215 2e-56
Alignment gi|4507853|ref|NP_003354.1| (NM_003363) ubiquitin specific prote... 197 8e-51
Alignment gi|22550104|ref|NP_115971.2| (NM_032582) ubiquitin specific prot... 108 3e-24
Alignment gi|4758564|ref|NP_004496.1| (NM_004505) ubiquitin specific prote... 75 5e-14
Alignment gi|21361712|ref|NP_004196.3| (NM_004205) ubiquitin specific prot... 57 1e-08
Alignment gi|4827054|ref|NP_005145.1| (NM_005154) ubiquitin specific prote... 57 1e-08
Alignment gi|28565285|ref|NP_741994.1| (NM_171997) ubiquitin specific prot... 56 3e-08
Alignment gi|21489975|ref|NP_055832.2| (NM_015017) ubiquitin specific prot... 54 9e-08
Alignment gi|31543912|ref|NP_006667.2| (NM_006676) ubiquitin specific prot... 54 1e-07
>gi|24234683|ref|NP_004642.2| (NM_004651) ubiquitin specific
protease 11; ubiquitin carboxyl-terminal hydrolase,
X-linked; ubiquitin thiolesterase 11; deubiquitinating
enzyme 11 [Homo sapiens]
Length = 963
Score = 479 bits (1233), Expect = e-136
Identities = 223/281 (79%), Positives = 256/281 (90%), Gaps = 1/281 (0%)
Frame = +1
Query: 61 EDQELQREAVPGLESQRRQIENGENGRGRPLQAGESWFLVEQHWYQKWEEYVQGGDQDSS 240
ED+E Q E +PGL+SQ RQIENGE+GR RPL+AGESWFLVE+HWY++WE YVQGGDQDSS
Sbjct: 66 EDREPQHEELPGLDSQWRQIENGESGRERPLRAGESWFLVEKHWYKQWEAYVQGGDQDSS 125
Query: 241 TSPGCINNAGLFEDQVNWRLKKGLVEGEDYVLLPAAAWHYLVNWYGLEHGQPPVERKVVE 420
T PGCINNA LF+D++NWRLK+GLVEGEDYVLLPAAAWHYLV+WYGLEHGQPP+ERKV+E
Sbjct: 126 TFPGCINNATLFQDEINWRLKEGLVEGEDYVLLPAAAWHYLVSWYGLEHGQPPIERKVIE 185
Query: 421 LPGIQKVEVYPVELLLVQHSDMDTAHTAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIK 600
LP IQKVEVYPVELLLV+H+D+ +HT QFSHTDS+ LVL TARE+FLV PQE+TRLW K
Sbjct: 186 LPNIQKVEVYPVELLLVRHNDLGKSHTVQFSHTDSIGLVLRTARERFLVEPQEDTRLWAK 245
Query: 601 NAEGSFERLCNTHVTVLDAALKTGQVVIMETRNKDGTWPSAQPHAM-NSATEEEEDFQGQ 777
N+EGS +RL +TH+TVLDAAL+TGQ++IMETR KDGTWPSAQ H M N+ +EE+EDF+GQ
Sbjct: 246 NSEGSLDRLYDTHITVLDAALETGQLIIMETRKKDGTWPSAQLHVMNNNMSEEDEDFKGQ 305
Query: 778 PGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEEL 900
PGICGLTNLGNTCFMNSALQCLSNVPQLTEYFL N YLEEL
Sbjct: 306 PGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNCYLEEL 346
>gi|14149627|ref|NP_006304.1| (NM_006313) ubiquitin specific
protease 15; deubiquitinating enzyme [Homo sapiens]
Length = 952
Score = 215 bits (548), Expect = 2e-56
Identities = 118/276 (42%), Positives = 167/276 (59%), Gaps = 26/276 (9%)
Frame = +1
Query: 151 LQAGESWFLVEQHWYQKWEEYV--------QGGDQDSSTSPGCINNAGLFEDQVNWRLKK 306
L+ G++W+LV+ W+++W++YV Q GDQ+ PG I+N+GL +D LK+
Sbjct: 24 LRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQN--VYPGPIDNSGLLKDGDAQSLKE 81
Query: 307 GLVEGEDYVLLPAAAWHYLVNWYGLEHGQPPVERKVVELPGIQK---VEVYPVELLLVQH 477
L++ DY+LLP W+ LV+WY L GQ P+ RKVVE K VEVY EL L ++
Sbjct: 82 HLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCEN 141
Query: 478 SDMDTAHTAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDA 657
+M+ T +FS D++D + R+ F + ++ETRLW K +FE L T+ DA
Sbjct: 142 GNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDA 201
Query: 658 ALKTGQVVIMETRNKDGTWP--SAQPHAMNS-------ATEEEEDF------QGQPGICG 792
L GQV+++E +N+DGTWP + P+ NS + D+ QPG+CG
Sbjct: 202 GLYQGQVLVIEQKNEDGTWPRGPSTPNVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCG 261
Query: 793 LTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEEL 900
L+NLGNTCFMNSA+QCLSN P LTEYFL ++Y EEL
Sbjct: 262 LSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEEL 297
>gi|4507853|ref|NP_003354.1| (NM_003363) ubiquitin specific
protease, proto-oncogene; Unph [Homo sapiens]
Length = 963
Score = 197 bits (500), Expect = 8e-51
Identities = 117/313 (37%), Positives = 163/313 (51%), Gaps = 63/313 (20%)
Frame = +1
Query: 151 LQAGESWFLVEQHWYQKWEEYVQGGDQDS------STSPGCINNAGLFEDQVNWRLKKGL 312
LQ G W+L++ W+++W++YV D + PG I+N+GLF D + LK+ L
Sbjct: 28 LQRGAQWYLIDSRWFKQWKKYVGFDSWDMYNVGEHNLFPGPIDNSGLFSDPESQTLKEHL 87
Query: 313 VEGEDYVLLPAAAWHYLVNWYGLEHGQPPVERKVVELPGIQ----KVEVYPVELLLVQHS 480
++ DYVL+P AW+ L+NWYG GQ P+ RKVVE G+ KVEVY +EL L ++S
Sbjct: 88 IDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVE-HGLFVKHCKVEVYLLELKLCENS 146
Query: 481 DMDTAHTAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDAA 660
D + FS D++ + R+ F + + ETRLW K ++E+L TV DA
Sbjct: 147 DPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTVQDAG 206
Query: 661 LKTGQVVIMETRNKDGTWP----------------------SAQPHAMNSAT-------- 750
L GQV+++E +N+DGTWP SA P++ SA+
Sbjct: 207 LYQGQVLVIEPQNEDGTWPRQTLQSKSSTAPSRNFTTSPKSSASPYSSVSASLIANGDST 266
Query: 751 -----------------------EEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQL 861
+E QPG+CGL NLGNTCFMNSALQCLSN L
Sbjct: 267 STCGMHSSGVSRGGSGFSASYNCQEPPSSHIQPGLCGLGNLGNTCFMNSALQCLSNTAPL 326
Query: 862 TEYFLKNRYLEEL 900
T+YFLK+ Y E+
Sbjct: 327 TDYFLKDEYEAEI 339
>gi|22550104|ref|NP_115971.2| (NM_032582) ubiquitin specific protease
32; ubiquitin specific protease [Homo sapiens]
Length = 1604
Score = 108 bits (271), Expect = 3e-24
Identities = 74/255 (29%), Positives = 118/255 (46%), Gaps = 37/255 (14%)
Frame = +1
Query: 247 PGCINNAGLFEDQV---------NWRLKKG--LVEGEDYVLLPAAAWHYLVNWYG--LEH 387
PG I+N L + RLK+ L+ G DY ++P W L +WYG L
Sbjct: 521 PGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYEMVPEPVWRALYHWYGANLAL 580
Query: 388 GQPPVERKVVELPGIQKVEVYPVELLLVQHSDMDT------------------------A 495
+P ++ ++P ++E++P LL ++ A
Sbjct: 581 PRPVIKNSKTDIP---ELELFPRYLLFLRQQPATRTQQSNIWVNMGNVPSPNAPLKRVLA 637
Query: 496 HTAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDAALKTGQ 675
+T FS ++ + H Q L +E+ RLW+ N+E L + + ++ Q
Sbjct: 638 YTGCFSRMQTIKEI-HEYLSQRLRIKEEDMRLWLYNSENYLTLLDDEDHKLEYLKIQDEQ 696
Query: 676 VVIMETRNKDGTWPSAQPHAMNSATEEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVP 855
+++E RNKD +WP NS+ + + G GL+NLGNTCFMNS++QC+SN
Sbjct: 697 HLVIEVRNKDMSWPEEMSFIANSSKIDRHKVPTEKGATGLSNLGNTCFMNSSIQCVSNTQ 756
Query: 856 QLTEYFLKNRYLEEL 900
LT+YF+ R+L EL
Sbjct: 757 PLTQYFISGRHLYEL 771
Score = 42.0 bits (97), Expect = 4e-04
Identities = 15/42 (35%), Positives = 24/42 (56%)
Frame = +1
Query: 151 LQAGESWFLVEQHWYQKWEEYVQGGDQDSSTSPGCINNAGLF 276
LQAG +WF++ W+Q+W+EYV+ P + N G +
Sbjct: 390 LQAGHNWFIISMQWWQQWKEYVKYDANPVVIEPSSVLNGGKY 431
>gi|4758564|ref|NP_004496.1| (NM_004505) ubiquitin specific protease
6; tre-2 oncogene; hyperpolymorphic gene 1 [Homo
sapiens]
Length = 786
Score = 75.1 bits (183), Expect = 5e-14
Identities = 33/71 (46%), Positives = 45/71 (62%)
Frame = +1
Query: 688 ETRNKDGTWPSAQPHAMNSATEEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTE 867
E NKD +WP NS+ + + + G GL+NLGNTCFMNS++QC+SN LT+
Sbjct: 499 EVHNKDMSWPEEMSFTANSSKIDRQKVPTEKGATGLSNLGNTCFMNSSIQCVSNTQPLTQ 558
Query: 868 YFLKNRYLEEL 900
YF+ R+L EL
Sbjct: 559 YFISGRHLYEL 569
>gi|21361712|ref|NP_004196.3| (NM_004205) ubiquitin specific
protease 2 isoform a; ubiquitin specific protease 12;
ubiquitin specific protease 9 [Homo sapiens]
Length = 605
Score = 57.4 bits (137), Expect = 1e-08
Identities = 30/77 (38%), Positives = 43/77 (54%)
Frame = +1
Query: 670 GQVVIMETRNKDGTWPSAQPHAMNSATEEEEDFQGQPGICGLTNLGNTCFMNSALQCLSN 849
G+ + ET G + P +S + + + G+ GL NLGNTCFMNS LQCLSN
Sbjct: 232 GRYTLWET----GKGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSN 287
Query: 850 VPQLTEYFLKNRYLEEL 900
+L +Y L+ Y+ +L
Sbjct: 288 TRELRDYCLQRLYMRDL 304
>gi|4827054|ref|NP_005145.1| (NM_005154) ubiquitin specific protease
8 [Homo sapiens]
Length = 1118
Score = 57.4 bits (137), Expect = 1e-08
Identities = 29/71 (40%), Positives = 43/71 (59%), Gaps = 3/71 (4%)
Frame = +1
Query: 697 NKDGTWPSAQPHAMNSATEEEED--FQGQ-PGICGLTNLGNTCFMNSALQCLSNVPQLTE 867
NK +P A+ ++++ + F G P + GL NLGNTC+MNS LQCL N P L +
Sbjct: 744 NKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAD 803
Query: 868 YFLKNRYLEEL 900
YF +N Y +++
Sbjct: 804 YFNRNCYQDDI 814
>gi|28565285|ref|NP_741994.1| (NM_171997) ubiquitin specific
protease 2 isoform b; ubiquitin specific protease 12;
ubiquitin specific protease 9 [Homo sapiens]
Length = 396
Score = 55.8 bits (133), Expect = 3e-08
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +1
Query: 781 GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEEL 900
G+ GL NLGNTCFMNS LQCLSN +L +Y L+ Y+ +L
Sbjct: 56 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDL 95
>gi|21489975|ref|NP_055832.2| (NM_015017) ubiquitin specific
protease 33; pVHL-interacting deubiquitinating enzyme 1
[Homo sapiens]
Length = 911
Score = 54.3 bits (129), Expect = 9e-08
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = +1
Query: 754 EEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFL 876
+EED G+ GL N+GNTC+MN+ALQ LSN P LT++FL
Sbjct: 143 DEEDELRARGLTGLKNIGNTCYMNAALQALSNCPPLTQFFL 183
Score = 35.8 bits (81), Expect = 0.031
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +1
Query: 166 SWFLVEQHWYQKWEEYVQGGDQDSSTSPGCINNAGLFEDQV-NWRLKKGLVEGEDYVLLP 342
+++ + W+++WE +V+G D D PG I+N + + N L++G G+ +
Sbjct: 815 TFYCISMQWFREWESFVKGKDGD---PPGPIDNTKIAVTKCGNVMLRQGADSGQ----IS 867
Query: 343 AAAWHYLVNWYG 378
W++L + YG
Sbjct: 868 EETWNFLQSIYG 879
>gi|31543912|ref|NP_006667.2| (NM_006676) ubiquitin specific
protease 20; pVHL-interacting deubiquitinating enzyme 2
[Homo sapiens]
Length = 913
Score = 53.5 bits (127), Expect = 1e-07
Identities = 23/44 (52%), Positives = 33/44 (74%)
Frame = +1
Query: 748 TEEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLK 879
+E E+D G+ G+ NLGN+C+MN+ALQ LSN P LT++FL+
Sbjct: 132 SESEDDDLKPRGLTGMKNLGNSCYMNAALQALSNCPPLTQFFLE 175
Score = 40.0 bits (92), Expect = 0.002
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Frame = +1
Query: 172 FLVEQHWYQKWEEYVQGGDQDSSTSPGCINNAGLFEDQVNWRLKKGLVEGEDYVLLPAAA 351
+ + W+++WE +V+G D + PG I+N+ + + + + ++ L +G DY +
Sbjct: 817 YCISMQWFREWEAFVKGKDNE---PPGPIDNSRIAQVKGSGHVQ--LKQGADYGQISEET 871
Query: 352 WHYLVNWYGLEHGQPPVE-RKVVELP-------GIQKVE 444
W YL + YG G P + R+ V P G QK+E
Sbjct: 872 WTYLNSLYG---GGPEIAIRQSVAQPLGPENLHGEQKIE 907
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Sep 13, 2003 12:13 AM
Number of letters in database: 10,428,096
Number of sequences in database: 19,804
Lambda K H
0.314 0.133 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,048,529
Number of Sequences: 19804
Number of extensions: 616178
Number of successful extensions: 1793
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 1601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1780
length of database: 10,428,096
effective HSP length: 99
effective length of database: 8,467,500
effective search space used: 1701967500
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
Search to RefSeq (Mouse) database
Query= 20030826C-001638 (20030826C-001638) 20030826C-001638
(904 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
16,274 sequences; 7,609,334 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|21489969|ref|NP_081880.2| (NM_027604) ubiquitin specific prot... 203 8e-53
Alignment gi|6755943|ref|NP_035808.1| (NM_011678) ubiquitin specific prote... 199 2e-51
Alignment gi|31981834|ref|NP_663603.2| (NM_145628) ubiquitin specific prot... 134 6e-32
Alignment gi|31981044|ref|NP_062703.2| (NM_019729) ubiquitin specific prot... 58 6e-09
Alignment gi|7949158|ref|NP_058088.1| (NM_016808) ubiquitin-specific prote... 56 2e-08
Alignment gi|18875422|ref|NP_573510.1| (NM_133247) Vhlh-interacting deubiq... 55 3e-08
Alignment gi|21312902|ref|NP_083439.1| (NM_029163) RIKEN cDNA 4930511O11 [... 55 5e-08
Alignment gi|30794162|ref|NP_083122.1| (NM_028846) ubiquitin specific prot... 54 1e-07
Alignment gi|31982806|ref|NP_034219.2| (NM_010089) deubiquitinating enzyme... 49 2e-06
Alignment gi|31560313|ref|NP_067497.2| (NM_021522) ubiquitin specific prot... 47 8e-06
>gi|21489969|ref|NP_081880.2| (NM_027604) ubiquitin specific
protease 15; granule cell antiserum positive 18 [Mus
musculus]
Length = 981
Score = 203 bits (516), Expect = 8e-53
Identities = 118/305 (38%), Positives = 164/305 (53%), Gaps = 55/305 (18%)
Frame = +1
Query: 151 LQAGESWFLVEQHWYQKWEEYV--------QGGDQDSSTSPGCINNAGLFEDQVNWRLKK 306
L+ G++W+LV+ W+++W++YV Q GDQ+ PG I+N+GL +D LK+
Sbjct: 24 LRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQN--VYPGPIDNSGLLKDGDAQSLKE 81
Query: 307 GLVEGEDYVLLPAAAWHYLVNWYGLEHGQPPVERKVVELPGIQK---VEVYPVELLLVQH 477
L++ DY+LLP W+ LV+WY L GQ P+ RKVVE K VEVY EL L ++
Sbjct: 82 HLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCEN 141
Query: 478 SDMDTAHTAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDA 657
+M+ T +FS D++D + R+ F + ++E RLW K +FE L T+ DA
Sbjct: 142 GNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKEARLWNKYMSNTFEPLNKPDSTIQDA 201
Query: 658 ALKTGQVVIMETRNKDGTWPSA-----QPHAMNSAT------------------------ 750
L GQV+++E +N+DGTWP P A N +T
Sbjct: 202 GLYQGQVLVIEQKNEDGTWPRGPSTPKSPGASNFSTLPKISPSSLSNNYNNINNRNVKNS 261
Query: 751 ---------------EEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNR 885
E QPG+CGL+NLGNTCFMNSA+QCLSN P LTEYFL ++
Sbjct: 262 NYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDK 321
Query: 886 YLEEL 900
Y EEL
Sbjct: 322 YQEEL 326
>gi|6755943|ref|NP_035808.1| (NM_011678) ubiquitin specific protease
4 (proto-oncogene); ubiquitous nuclear protein [Mus
musculus]
Length = 962
Score = 199 bits (505), Expect = 2e-51
Identities = 118/316 (37%), Positives = 164/316 (51%), Gaps = 63/316 (19%)
Frame = +1
Query: 142 GRPLQAGESWFLVEQHWYQKWEEYVQGGDQDS------STSPGCINNAGLFEDQVNWRLK 303
G LQ G W+L++ W+++W++YV D + PG I+N+GLF D + LK
Sbjct: 25 GTTLQRGAQWYLIDSRWFKQWKKYVGFDSWDMYNVGEHNLFPGPIDNSGLFSDPESQTLK 84
Query: 304 KGLVEGEDYVLLPAAAWHYLVNWYGLEHGQPPVERKVVELPGIQ----KVEVYPVELLLV 471
+ L++ DYVL+PA AW+ L+NWYG GQ P+ RKVV+ G+ KVEVY +EL L
Sbjct: 85 EHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVD-DGLFVKHCKVEVYLLELKLC 143
Query: 472 QHSDMDTAHTAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVL 651
++SD + FS D++ + R+ F + + ETRLW K ++E+L T+
Sbjct: 144 ENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQ 203
Query: 652 DAALKTGQVVIMETRNKDGTW----------------------PSAQPHAMNSAT----- 750
DA L GQV+++E +N+DGTW PSA P+ SA+
Sbjct: 204 DAGLYQGQVLVIEPQNEDGTWPRQSLQSKSSTAPSRNFTTSSKPSASPYCSVSASLIANG 263
Query: 751 --------------------------EEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNV 852
+E QPG+CGL NLGNTCFMNSALQCLSN
Sbjct: 264 DSTNSSGMHSSGVSRGGSGFSASYNCQEAPSPHIQPGLCGLGNLGNTCFMNSALQCLSNT 323
Query: 853 PQLTEYFLKNRYLEEL 900
LTEYFLK+ Y E+
Sbjct: 324 APLTEYFLKDEYEAEI 339
>gi|31981834|ref|NP_663603.2| (NM_145628) ubiquitin specific
protease 11 [Mus musculus]
Length = 699
Score = 134 bits (336), Expect = 6e-32
Identities = 62/72 (86%), Positives = 65/72 (90%)
Frame = +1
Query: 685 METRNKDGTWPSAQPHAMNSATEEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLT 864
METRNKDGTWPSAQ MN+ +E+EDFQGQPGICGLTNLGNTCFMNSA QCLSNVPQLT
Sbjct: 1 METRNKDGTWPSAQLCGMNNIPDEDEDFQGQPGICGLTNLGNTCFMNSAQQCLSNVPQLT 60
Query: 865 EYFLKNRYLEEL 900
EYFL NRYLEEL
Sbjct: 61 EYFLNNRYLEEL 72
>gi|31981044|ref|NP_062703.2| (NM_019729) ubiquitin specific
protease 8; putative deubiquitinating enzyme [Mus
musculus]
Length = 1080
Score = 57.8 bits (138), Expect = 6e-09
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Frame = +1
Query: 682 IMETRNKDGTWPSAQPHAMNSATEEEED--FQGQ-PGICGLTNLGNTCFMNSALQCLSNV 852
++ NK +P A+ ++++ + F G P + GL NLGNTC+MNS LQCL N
Sbjct: 701 MVNRENKPPCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNA 760
Query: 853 PQLTEYFLKNRYLEEL 900
P L +YF +N Y +++
Sbjct: 761 PHLADYFNRNCYQDDI 776
>gi|7949158|ref|NP_058088.1| (NM_016808) ubiquitin-specific protease
2; ubiquitin-specific protease UBP41 [Mus musculus]
Length = 353
Score = 55.8 bits (133), Expect = 2e-08
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +1
Query: 781 GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEEL 900
G+ GL NLGNTCFMNS LQCLSN +L +Y L+ Y+ +L
Sbjct: 13 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDL 52
>gi|18875422|ref|NP_573510.1| (NM_133247) Vhlh-interacting
deubiquitinating enzyme 1; pVHL-interacting
deubiquitinating enzyme 1 [Mus musculus]
Length = 909
Score = 55.5 bits (132), Expect = 3e-08
Identities = 25/41 (60%), Positives = 31/41 (74%)
Frame = +1
Query: 754 EEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFL 876
EEED G+ GL N+GNTC+MN+ALQ LSN P LT++FL
Sbjct: 143 EEEDELKARGLTGLKNIGNTCYMNAALQALSNCPPLTQFFL 183
Score = 35.4 bits (80), Expect = 0.030
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +1
Query: 166 SWFLVEQHWYQKWEEYVQGGDQDSSTSPGCINNAGLFEDQVNWRLKKGLVEGEDYVLLPA 345
+++ + W+++WE +V+G D D PG I+N + + + K +G D +
Sbjct: 813 TFYCISMQWFREWESFVKGKDGD---PPGPIDNTKIAVTKCGSVMLK---QGADSGQISE 866
Query: 346 AAWHYLVNWYG 378
W++L + YG
Sbjct: 867 ETWNFLQSIYG 877
>gi|21312902|ref|NP_083439.1| (NM_029163) RIKEN cDNA 4930511O11 [Mus
musculus]
Length = 390
Score = 54.7 bits (130), Expect = 5e-08
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = +1
Query: 781 GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEEL 900
G+ GL NLGNTC+MN+ LQCL +V L EYFL +Y+ L
Sbjct: 43 GVTGLRNLGNTCYMNAILQCLCSVSPLVEYFLSGKYITAL 82
>gi|30794162|ref|NP_083122.1| (NM_028846) ubiquitin specific
protease 20 [Mus musculus]
Length = 916
Score = 53.5 bits (127), Expect = 1e-07
Identities = 23/44 (52%), Positives = 33/44 (74%)
Frame = +1
Query: 748 TEEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLK 879
+E E+D G+ G+ NLGN+C+MN+ALQ LSN P LT++FL+
Sbjct: 132 SESEDDDLKPRGLTGMKNLGNSCYMNAALQALSNCPPLTQFFLE 175
Score = 43.5 bits (101), Expect = 1e-04
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Frame = +1
Query: 172 FLVEQHWYQKWEEYVQGGDQDSSTSPGCINNAGLFEDQVNWRLKKGLVEGEDYVLLPAAA 351
+ + HW+++WE +V+G D S PG I+N+ + + + + ++ L +G D +
Sbjct: 820 YCISMHWFREWEAFVKGKD---SEPPGPIDNSRIAQVKGSGHIQ--LKQGADCGQISEET 874
Query: 352 WHYLVNWYGLEHGQP--PVERKVVELP------GIQKVE 444
W YL + YG G P + + V +LP G QK+E
Sbjct: 875 WTYLSSLYG---GGPEIAIRQSVAQLPDPESLHGEQKIE 910
>gi|31982806|ref|NP_034219.2| (NM_010089) deubiquitinating enzyme 2
[Mus musculus]
Length = 545
Score = 49.3 bits (116), Expect = 2e-06
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +1
Query: 778 PGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRY 888
PG CGL N GN+C++N+ALQCL++ P L +Y L Y
Sbjct: 49 PG-CGLQNTGNSCYLNAALQCLTHTPPLADYMLSQEY 84
>gi|31560313|ref|NP_067497.2| (NM_021522) ubiquitin specific
protease 14; dUB-type TGT for deubiquitinating enzyme;
dUB-type TGT; ataxia [Mus musculus]
Length = 493
Score = 47.4 bits (111), Expect = 8e-06
Identities = 23/51 (45%), Positives = 34/51 (66%)
Frame = +1
Query: 715 PSAQPHAMNSATEEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTE 867
PSA+ + TEE+ + CGLTNLGNTC+MN+ +QC+ +VP+L +
Sbjct: 82 PSAKTVFVEDMTEEQLATAMELP-CGLTNLGNTCYMNATVQCIRSVPELKD 131
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Sep 13, 2003 12:13 AM
Number of letters in database: 7,609,334
Number of sequences in database: 16,274
Lambda K H
0.314 0.133 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,824,991
Number of Sequences: 16274
Number of extensions: 432606
Number of successful extensions: 1285
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 7,609,334
effective HSP length: 96
effective length of database: 6,047,030
effective search space used: 1233594120
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)