Search to RefSeq (Human) database
Query= 20030826C-001770 (20030826C-001770) 20030826C-001770
(1178 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,804 sequences; 10,428,096 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|17738292|ref|NP_004042.1| (NM_004051) 3-hydroxybutyrate dehyd... 305 e-142
Alignment gi|21361105|ref|NP_003699.2| (NM_003708) microsomal NAD+-depende... 108 2e-41
Alignment gi|22758144|ref|NP_005762.2| (NM_005771) NADP-dependent retinol ... 108 3e-41
Alignment gi|31542941|ref|NP_000187.2| (NM_000196) hydroxysteroid (11-beta... 100 4e-32
Alignment gi|4504503|ref|NP_002144.1| (NM_002153) hydroxysteroid (17-beta)... 117 2e-26
Alignment gi|19743808|ref|NP_003716.2| (NM_003725) 3-hydroxysteroid epimer... 110 1e-24
Alignment gi|22507405|ref|NP_683695.1| (NM_148897) orphan short-chain dehy... 98 1e-20
Alignment gi|4506463|ref|NP_002896.1| (NM_002905) retinol dehydrogenase 5 ... 91 1e-18
Alignment gi|20149619|ref|NP_056325.2| (NM_015510) DKFZP566O084 protein [H... 54 3e-13
Alignment gi|7657478|ref|NP_056540.1| (NM_015725) retinol dehydrogenase 8 ... 58 4e-13
>gi|17738292|ref|NP_004042.1| (NM_004051) 3-hydroxybutyrate
dehydrogenase precursor; (R)-3-hydroxybutyrate
dehydrogenase [Homo sapiens]
Length = 343
Score = 305 bits (781), Expect(2) = e-142
Identities = 153/194 (78%), Positives = 167/194 (85%)
Frame = +2
Query: 233 RLSRPLSQLPRKTLNFSERENGARGSLLFYSPSFVPGSRRTYADSVNPVGSKAVLVTGCD 412
RLSRPLS+LP KTL+ +RENGAR LL S SF+P RRTYA + PVGSKAVLVTGCD
Sbjct: 5 RLSRPLSRLPGKTLSACDRENGARRPLLLGSTSFIPIGRRTYASAAEPVGSKAVLVTGCD 64
Query: 413 SGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQLNXXXXXXXXXXX 592
SGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSL SDRLRTVQLN
Sbjct: 65 SGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQLNVCSSEEVEKVV 124
Query: 593 XTIRSSLQDPEKGLWGLVNNAGISTFGDVEFTSMETYKEVAEVNLWGTVRVTKSFLPLIR 772
+RSSL+DPEKG+WGLVNNAGISTFG+VEFTS+ETYK+VAEVNLWGTVR+TKSFLPLIR
Sbjct: 125 EIVRSSLKDPEKGMWGLVNNAGISTFGEVEFTSLETYKQVAEVNLWGTVRMTKSFLPLIR 184
Query: 773 RAKGRVVNISSIMG 814
RAKGRVVNISS++G
Sbjct: 185 RAKGRVVNISSMLG 198
Score = 220 bits (561), Expect(2) = e-142
Identities = 101/122 (82%), Positives = 115/122 (93%)
Frame = +1
Query: 811 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 990
GR+AN +RSPYCITKFGVEAFSDCLRYEM+PLGVKVSVVEPGNFI ATSLYSPE I+AIA
Sbjct: 198 GRMANPARSPYCITKFGVEAFSDCLRYEMYPLGVKVSVVEPGNFIAATSLYSPESIQAIA 257
Query: 991 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRYHP 1170
KMWE++PE VR+DYG+KYFDE +A+ME +C+SGSTDTSPVI+AVTHALT+TTPYTRYHP
Sbjct: 258 KKMWEELPEVVRKDYGKKYFDEKIAKMETYCSSGSTDTSPVIDAVTHALTATTPYTRYHP 317
Query: 1171 MD 1176
MD
Sbjct: 318 MD 319
>gi|21361105|ref|NP_003699.2| (NM_003708) microsomal NAD+-dependent
retinol dehydrogenase 4 [Homo sapiens]
Length = 317
Score = 108 bits (271), Expect(2) = 2e-41
Identities = 62/144 (43%), Positives = 84/144 (58%), Gaps = 1/144 (0%)
Frame = +2
Query: 386 KAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQLNXX 565
K V +TGCDSGFG LA+ L ++G V A CL + G ++L SDRL TV L+
Sbjct: 30 KYVFITGCDSGFGKLLARQLDARGLRVLAACLTEK----GAEQLRGQTSDRLETVTLDVT 85
Query: 566 XXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIST-FGDVEFTSMETYKEVAEVNLWGTVR 742
++ ++D KGLWGLVNNAGIS E + + + +VNL G +
Sbjct: 86 KTESVAAAAQWVKECVRD--KGLWGLVNNAGISLPTAPNELLTKQDLLTILDVNLLGVID 143
Query: 743 VTKSFLPLIRRAKGRVVNISSIMG 814
VT + LPL+RRA+GRVVN+ S+MG
Sbjct: 144 VTLNLLPLVRRARGRVVNVFSVMG 167
Score = 79.3 bits (194), Expect(2) = 2e-41
Identities = 43/108 (39%), Positives = 62/108 (56%)
Frame = +1
Query: 841 YCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIATKMWEQVPET 1020
YCI+K+GVEAFSD LR E+ GVKV+++EPG F T++ S ER ++W++
Sbjct: 176 YCISKYGVEAFSDSLRRELSYFGVKVAMIEPGYF--KTAVTSKERFLKSFLEIWDRSSPE 233
Query: 1021 VRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRY 1164
V++ YG K+ + E + D S V N + HAL + P TRY
Sbjct: 234 VKEAYGEKFVADYKKSAEQMEQKCTQDLSLVTNCMEHALIACHPRTRY 281
>gi|22758144|ref|NP_005762.2| (NM_005771) NADP-dependent retinol
dehydrogenase/reductase; 3-alpha hydroxysteroid
dehydrogenase [Homo sapiens]
Length = 319
Score = 108 bits (271), Expect(2) = 3e-41
Identities = 59/150 (39%), Positives = 88/150 (58%), Gaps = 1/150 (0%)
Frame = +2
Query: 368 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 547
+ + K + +TGCDSGFG A+ KGF V A CL + G L + S+RLRT
Sbjct: 24 IEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLRT 79
Query: 548 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGI-STFGDVEFTSMETYKEVAEVN 724
V L+ +++ Q EKGLWGL+NNAG+ ++ ++E Y+E EVN
Sbjct: 80 VLLDVTDPENVKRTAQWVKN--QVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIEVN 137
Query: 725 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 814
L+G + VT + LPL+++A+GRV+N+SS+ G
Sbjct: 138 LFGLISVTLNMLPLVKKAQGRVINVSSVGG 167
Score = 78.2 bits (191), Expect(2) = 3e-41
Identities = 44/118 (37%), Positives = 66/118 (55%)
Frame = +1
Query: 811 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 990
GRLA V Y +K+ VE F+D LR +M GV VS +EPG F T+L P ++
Sbjct: 167 GRLAIVGGG-YTPSKYAVEGFNDSLRRDMKAFGVHVSCIEPGLF--KTNLADPVKVIEKK 223
Query: 991 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRY 1164
+WEQ+ ++Q YG Y ++ + +++ + + D SPV+ + HALTS P T Y
Sbjct: 224 LAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKSYVNMDLSPVVECMDHALTSLFPKTHY 281
>gi|31542941|ref|NP_000187.2| (NM_000196) hydroxysteroid (11-beta)
dehydrogenase 2 [Homo sapiens]
Length = 405
Score = 99.8 bits (247), Expect(2) = 4e-32
Identities = 59/151 (39%), Positives = 82/151 (54%), Gaps = 1/151 (0%)
Frame = +2
Query: 374 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQ 553
PV ++AVL+TGCDSGFG AK L S GF V A L + G EL + S RLR +Q
Sbjct: 79 PVATRAVLITGCDSGFGKETAKKLDSMGFTVLATVL--ELNSPGAIELRTCCSPRLRLLQ 136
Query: 554 LNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIS-TFGDVEFTSMETYKEVAEVNLW 730
++ ++ GLWGLVNNAG + D E + + T++ EVN +
Sbjct: 137 MDLTKPGDISRVLEFTKA--HTTSTGLWGLVNNAGHNEVVADAELSPVATFRSCMEVNFF 194
Query: 731 GTVRVTKSFLPLIRRAKGRVVNISSIMGAWP 823
G + +TK LPL+R ++GR+V + S G P
Sbjct: 195 GALELTKGLLPLLRSSRGRIVTVGSPAGDMP 225
Score = 57.0 bits (136), Expect(2) = 4e-32
Identities = 34/118 (28%), Positives = 57/118 (47%), Gaps = 8/118 (6%)
Frame = +1
Query: 841 YCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIATKMWEQ---- 1008
Y +K V D E+ P GVKVS+++PG F E +R + WE+
Sbjct: 232 YGTSKAAVALLMDTFSCELLPWGVKVSIIQPGCF-------KTESVRNVG--QWEKRKQL 282
Query: 1009 ----VPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRYHP 1170
+P+ + Q YG+ Y + + + + +D +PV++A+T AL + P RY+P
Sbjct: 283 LLANLPQELLQAYGKDYIEHLHGQFLHSLRLAMSDLTPVVDAITDALLAARPRRRYYP 340
>gi|4504503|ref|NP_002144.1| (NM_002153) hydroxysteroid (17-beta)
dehydrogenase 2 [Homo sapiens]
Length = 387
Score = 117 bits (292), Expect = 2e-26
Identities = 68/152 (44%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Frame = +2
Query: 374 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQ 553
PV KAVLVTG D G G +L K+L GF VFAG L ++ G +EL S RL +Q
Sbjct: 79 PVDQKAVLVTGGDCGLGHALCKYLDELGFTVFAGVL--NENGPGAEELRRTCSPRLSVLQ 136
Query: 554 LNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGISTFG-DVEFTSMETYKEVAEVNLW 730
++ + + LQD +GLW ++NNAG+ F D E M YK+ VN +
Sbjct: 137 MDITKPVQIKDAYSKVAAMLQD--RGLWAVINNAGVLGFPTDGELLLMTDYKQCMAVNFF 194
Query: 731 GTVRVTKSFLPLIRRAKGRVVNISSIMGAWPM 826
GTV VTK+FLPL+R++KGR+VN+SS+ G PM
Sbjct: 195 GTVEVTKTFLPLLRKSKGRLVNVSSMGGGAPM 226
Score = 58.2 bits (139), Expect = 9e-09
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Frame = +1
Query: 799 QQHNGRLANVSR----------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIV 948
++ GRL NVS + Y +K V FS +R E+ G+KV+ ++PG F+
Sbjct: 208 RKSKGRLVNVSSMGGGAPMERLASYGSSKAAVTMFSSVMRLELSKWGIKVASIQPGGFLT 267
Query: 949 ATSLYSPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFC----NSGSTDTSPVI 1116
+ S ++ + + + +P V++DYG+ Y + NF + S D SPV+
Sbjct: 268 NIAGTS-DKWEKLEKDILDHLPAEVQEDYGQDY----ILAQRNFLLLINSLASKDFSPVL 322
Query: 1117 NAVTHALTSTTPYTRYHP 1170
+ HA+ + +P+ Y P
Sbjct: 323 RDIQHAILAKSPFAYYTP 340
>gi|19743808|ref|NP_003716.2| (NM_003725) 3-hydroxysteroid
epimerase; oxidative
3-alpha-hydroxysteroid-dehydrogenase;
3(alpha->beta)-hydroxysteroid epimerase; retinol
dehydrogenase; oxidoreductase; NAD+ -dependent 3
alpha-hydroxysteroid dehydrogenase [Homo sapiens]
Length = 317
Score = 110 bits (275), Expect = 1e-24
Identities = 64/150 (42%), Positives = 89/150 (58%), Gaps = 1/150 (0%)
Frame = +2
Query: 368 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 547
V+ + K V +TGCDSGFG LA+ L ++G V A CL + G ++L SDRL T
Sbjct: 24 VSHLQDKYVFITGCDSGFGNLLARQLDARGLRVLAACLTEK----GAEQLRGQTSDRLET 79
Query: 548 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIST-FGDVEFTSMETYKEVAEVN 724
V L+ ++ + D +GLWGLVNNAGI T E+ + E + +VN
Sbjct: 80 VTLDVTKMESIAAATQWVKEHVGD--RGLWGLVNNAGILTPITLCEWLNTEDSMNMLKVN 137
Query: 725 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 814
L G ++VT S LPL+RRA+GR+VN+SSI+G
Sbjct: 138 LIGVIQVTLSMLPLVRRARGRIVNVSSILG 167
Score = 88.2 bits (217), Expect = 8e-18
Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 11/129 (8%)
Frame = +1
Query: 811 GRLANVSR---------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFI--VATS 957
GR+ NVS YC++K+GVEAFSD LR E+ GVK+S+VEPG F +
Sbjct: 157 GRIVNVSSILGRVAFFVGGYCVSKYGVEAFSDILRREIQHFGVKISIVEPGYFRTGMTNM 216
Query: 958 LYSPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHAL 1137
S ER++ + W++ P+ +++ YG++YFD + M+ + ST+ + V + + HAL
Sbjct: 217 TQSLERMK----QSWKEAPKHIKETYGQQYFDALYNIMKEGLLNCSTNLNLVTDCMEHAL 272
Query: 1138 TSTTPYTRY 1164
TS P TRY
Sbjct: 273 TSVHPRTRY 281
>gi|22507405|ref|NP_683695.1| (NM_148897) orphan short-chain
dehydrogenase / reductase; retinol dehydrogenase similar
protein [Homo sapiens]
Length = 313
Score = 97.8 bits (242), Expect = 1e-20
Identities = 49/136 (36%), Positives = 77/136 (56%), Gaps = 2/136 (1%)
Frame = +1
Query: 769 PEGQRPRGQ--HQQHNGRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNF 942
P +R RG+ + +G V YC++KFGVEAFSD +R E++ GVKV ++EPGN+
Sbjct: 146 PMVKRARGRVVNMSSSGGRVAVIGGGYCVSKFGVEAFSDSIRRELYYFGVKVCIIEPGNY 205
Query: 943 IVATSLYSPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINA 1122
T++ E + + K+WE++P+ R YG YF +++N VIN+
Sbjct: 206 --RTAILGKENLESRMRKLWERLPQETRDSYGEDYFRIYTDKLKNIMQVAEPRVRDVINS 263
Query: 1123 VTHALTSTTPYTRYHP 1170
+ HA+ S +P RY+P
Sbjct: 264 MEHAIVSRSPRIRYNP 279
Score = 95.5 bits (236), Expect = 5e-20
Identities = 58/150 (38%), Positives = 82/150 (54%), Gaps = 1/150 (0%)
Frame = +2
Query: 368 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 547
V + K V +TGCDSGFG LAK L +G V A C ++ G ++L S RL+T
Sbjct: 20 VGNLSEKYVFITGCDSGFGNLLAKQLVDRGMQVLAACFTEE----GSQKLQRDTSYRLQT 75
Query: 548 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIST-FGDVEFTSMETYKEVAEVN 724
L+ +R + E+GLW LVNNAG+ G E+ + + + +V VN
Sbjct: 76 TLLDVTKSESIKAAAQWVRDKVG--EQGLWALVNNAGVGLPSGPNEWLTKDDFVKVINVN 133
Query: 725 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 814
L G + VT LP+++RA+GRVVN+SS G
Sbjct: 134 LVGLIEVTLHMLPMVKRARGRVVNMSSSGG 163
>gi|4506463|ref|NP_002896.1| (NM_002905) retinol dehydrogenase 5
(11-cis and 9-cis); retinol dehydrogenase 5 (11-cisand
9-cis) [Homo sapiens]
Length = 318
Score = 90.9 bits (224), Expect = 1e-18
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 1/148 (0%)
Frame = +2
Query: 374 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQ 553
P + V +TGCDSGFG LA L K F V A CL G ++L + S T
Sbjct: 25 PASNAFVFITGCDSGFGRLLALQLDQKSFRVLASCLTPS----GAEDLQGVASSGFNTTL 80
Query: 554 LNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIS-TFGDVEFTSMETYKEVAEVNLW 730
L+ + ++ E GL+GLVNNAG++ G + + + ++ V VN
Sbjct: 81 LDITDPQSFQQAAKWVEMHVK--EAGLFGLVNNAGVAGIIGPTPWLTRDDFQRVLNVNTM 138
Query: 731 GTVRVTKSFLPLIRRAKGRVVNISSIMG 814
G + VT + LPL+++A+GRV+NI+S++G
Sbjct: 139 GPIGVTLALLPLLQQARGRVINITSVLG 166
Score = 71.2 bits (173), Expect = 1e-12
Identities = 42/134 (31%), Positives = 66/134 (48%), Gaps = 10/134 (7%)
Frame = +1
Query: 799 QQHNGRLANVSR---------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVA 951
QQ GR+ N++ YC++KFG+EAFSD LR ++ G++ S+VEPG F
Sbjct: 152 QQARGRVINITSVLGRLAANGGGYCVSKFGLEAFSDSLRRDVAHFGIRESIVEPGFF--R 209
Query: 952 TSLYSPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCN-SGSTDTSPVINAVT 1128
T + + E + W ++P + YG + + + + N D + V +
Sbjct: 210 TPVTNLESLEKTLQACWARLPPATQAHYGGAFLTKYLKMQQRIMNLICDPDLTKVSRCLE 269
Query: 1129 HALTSTTPYTRYHP 1170
HALT+ P TRY P
Sbjct: 270 HALTARHPRTRYSP 283
>gi|20149619|ref|NP_056325.2| (NM_015510) DKFZP566O084 protein [Homo
sapiens]
Length = 325
Score = 53.9 bits (128), Expect(2) = 3e-13
Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Frame = +2
Query: 392 VLVTGCDSGFGFSLAKHLHSKGF-LVFAGCLMKDKG--HDGVKELDSLKSDRLRT----- 547
V++TG SG G AK ++ G LV G ++ G + ++EL + + +++T
Sbjct: 55 VVITGATSGLGKECAKVFYAAGAKLVLCG---RNGGALEELIRELTASHATKVQTHKPYL 111
Query: 548 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGISTFGDVEFTSMETYKEVAEVNL 727
V + I + LVNNAGIS G + T+++ K V E N
Sbjct: 112 VTFDLTDSGAIVAAAAEILQCFGYVDI----LVNNAGISYRGTIMDTTVDVDKRVMETNY 167
Query: 728 WGTVRVTKSFLP-LIRRAKGRVVNISSIMG 814
+G V +TK+ LP +I+R +G +V ISSI G
Sbjct: 168 FGPVALTKALLPSMIKRRQGHIVAISSIQG 197
Score = 39.3 bits (90), Expect(2) = 3e-13
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +1
Query: 811 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPG 936
G+++ RS Y +K +AF DCLR EM ++V+V+ PG
Sbjct: 197 GKMSIPFRSAYAASKHATQAFFDCLRAEMEQYEIEVTVISPG 238
>gi|7657478|ref|NP_056540.1| (NM_015725) retinol dehydrogenase 8
(all-trans); photoreceptor outer segment all-trans
retinol dehydrogenase [Homo sapiens]
Length = 311
Score = 58.2 bits (139), Expect(2) = 4e-13
Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 6/149 (4%)
Frame = +2
Query: 386 KAVLVTGCDSGFGFSLA---KHLHSKGFLVFAGCLMKDKGHDGVKELDSLKS--DRLRTV 550
+ VL++GC SG G LA H K + V A M+D G E + ++ L
Sbjct: 6 RTVLISGCSSGIGLELAVQLAHDPKKRYQVVA--TMRDLGKKETLEAAAGEALGQTLTVA 63
Query: 551 QLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGISTFGDVEFTSMETYKEVAEVNLW 730
QL+ I+ + LVNNAG+ G +E S+ + V + N +
Sbjct: 64 QLDVCSDESVAQCLSCIQGEVDV-------LVNNAGMGLVGPLEGLSLAAMQNVFDTNFF 116
Query: 731 GTVRVTKSFLP-LIRRAKGRVVNISSIMG 814
G VR+ K+ LP + RR +G +V ISS+MG
Sbjct: 117 GAVRLVKAVLPGMKRRRQGHIVVISSVMG 145
Score = 34.7 bits (78), Expect(2) = 4e-13
Identities = 28/107 (26%), Positives = 49/107 (45%)
Frame = +1
Query: 841 YCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIATKMWEQVPET 1020
Y +KF +E F + L ++ + +S+VEPG V T + + PET
Sbjct: 155 YAASKFALEGFFESLAIQLLQFNIFISLVEPGP--VVTEFEGKLLAQVSMAEFPGTDPET 212
Query: 1021 VRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTR 1161
+ Y R + + A + FC+ G + V+ A+ + ++ST P R
Sbjct: 213 LH--YFRDLY--LPASRKLFCSVGQ-NPQDVVQAIVNVISSTRPPLR 254
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Sep 13, 2003 12:13 AM
Number of letters in database: 10,428,096
Number of sequences in database: 19,804
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,244,051
Number of Sequences: 19804
Number of extensions: 719232
Number of successful extensions: 2589
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 2178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2553
length of database: 10,428,096
effective HSP length: 101
effective length of database: 8,427,892
effective search space used: 2452516572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20030826C-001770 (20030826C-001770) 20030826C-001770
(1178 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
16,274 sequences; 7,609,334 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|31982169|ref|NP_780386.2| (NM_175177) 3-hydroxybutyrate dehyd... 296 e-141
Alignment gi|27544937|ref|NP_671755.1| (NM_147222) retinol dehydrogenase s... 112 1e-44
Alignment gi|23680945|ref|NP_694773.1| (NM_153133) cis-retinol/androgen de... 109 4e-44
Alignment gi|21703846|ref|NP_663399.1| (NM_145424) cis-retinol/3alpha hydr... 107 3e-43
Alignment gi|30425272|ref|NP_780721.1| (NM_175512) RIKEN cDNA C730025I08 g... 107 1e-39
Alignment gi|6680281|ref|NP_032315.1| (NM_008289) hydroxysteroid 11-beta d... 101 2e-31
Alignment gi|6680283|ref|NP_032316.1| (NM_008290) hydroxysteroid (17-beta)... 125 2e-29
Alignment gi|6677697|ref|NP_033066.1| (NM_009040) retinol dehydrogenase 6;... 115 3e-26
Alignment gi|20147789|ref|NP_536684.1| (NM_080436) retinol dehydrogenase 1... 114 7e-26
Alignment gi|8567342|ref|NP_059501.1| (NM_017473) retinol dehydrogenase 7;... 114 9e-26
>gi|31982169|ref|NP_780386.2| (NM_175177) 3-hydroxybutyrate
dehydrogenase (heart, mitochondrial); 3-hydroxybutyrate
dehydrogenase; D-beta-hydroxybutyrate dehydrogenase [Mus
musculus]
Length = 343
Score = 296 bits (758), Expect(2) = e-141
Identities = 147/194 (75%), Positives = 161/194 (82%)
Frame = +2
Query: 233 RLSRPLSQLPRKTLNFSERENGARGSLLFYSPSFVPGSRRTYADSVNPVGSKAVLVTGCD 412
RLSRPLSQLP K L+ +RENG R +LLFY SF P +RRTYA + KA+L+TGCD
Sbjct: 5 RLSRPLSQLPGKALSVRDRENGTRHTLLFYPASFSPDTRRTYASQADAASGKAILITGCD 64
Query: 413 SGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQLNXXXXXXXXXXX 592
SGFGFSLAKHLHSKGFLVFAGCLMKDKG GVKELDSLKSDRLRT+QLN
Sbjct: 65 SGFGFSLAKHLHSKGFLVFAGCLMKDKGDAGVKELDSLKSDRLRTIQLNVCNSEEVEKAV 124
Query: 593 XTIRSSLQDPEKGLWGLVNNAGISTFGDVEFTSMETYKEVAEVNLWGTVRVTKSFLPLIR 772
TIRS L+DPEKG+WGLVNNAGISTFG+VEFTSMETYKEVAEVNLWGTVR TKSFLPL+R
Sbjct: 125 ETIRSGLKDPEKGMWGLVNNAGISTFGEVEFTSMETYKEVAEVNLWGTVRTTKSFLPLLR 184
Query: 773 RAKGRVVNISSIMG 814
RAKGRVVNISS++G
Sbjct: 185 RAKGRVVNISSMLG 198
Score = 223 bits (568), Expect(2) = e-141
Identities = 103/122 (84%), Positives = 113/122 (92%)
Frame = +1
Query: 811 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 990
GR+AN +RSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFI ATSLYSPERI+AIA
Sbjct: 198 GRMANPARSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIAATSLYSPERIQAIA 257
Query: 991 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRYHP 1170
KMW+ +PE VR+DYGRKYFDE +A+ME +CNSGSTDTS VINAVTHALT+ TPYTRYHP
Sbjct: 258 KKMWDDLPEVVRKDYGRKYFDEKIAKMETYCNSGSTDTSSVINAVTHALTAATPYTRYHP 317
Query: 1171 MD 1176
MD
Sbjct: 318 MD 319
>gi|27544937|ref|NP_671755.1| (NM_147222) retinol dehydrogenase
similar protein 2 [Mus musculus]
Length = 318
Score = 112 bits (279), Expect(2) = 1e-44
Identities = 64/150 (42%), Positives = 90/150 (59%), Gaps = 1/150 (0%)
Frame = +2
Query: 368 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 547
V+ + K V +TGCDSGFG LA+ L +G V A CL + G +EL + SDRL T
Sbjct: 24 VSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAACLTEK----GAEELRNKTSDRLET 79
Query: 548 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIST-FGDVEFTSMETYKEVAEVN 724
V L+ ++ + + +GLWGLVNNAGIS G ++ + + + V +VN
Sbjct: 80 VILDVTKTESIVAATQWVKERVGN--RGLWGLVNNAGISVPLGLSQWMNKQNFASVLDVN 137
Query: 725 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 814
L G + VT + LPL+R+A+GRVVN+SSIMG
Sbjct: 138 LLGMIEVTLTMLPLVRKARGRVVNVSSIMG 167
Score = 86.3 bits (212), Expect(2) = 1e-44
Identities = 45/118 (38%), Positives = 67/118 (56%)
Frame = +1
Query: 811 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 990
GR++ YCI+K+GVEAFSD LR E+ GVKV+++EPG F+ T + S R+ +
Sbjct: 167 GRVSLHGNGGYCISKYGVEAFSDSLRRELSYFGVKVAIIEPGFFL--TGMASSARLSSNT 224
Query: 991 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRY 1164
+W+Q +R+ YG KY + + + D S V + + HALT+ P TRY
Sbjct: 225 QMLWDQTSSEIREIYGEKYLAFYLKSLNELDKRCNKDLSLVTDCMEHALTACHPRTRY 282
>gi|23680945|ref|NP_694773.1| (NM_153133) cis-retinol/androgen
dehydrogenase type 3 [Mus musculus]
Length = 317
Score = 109 bits (273), Expect(2) = 4e-44
Identities = 62/150 (41%), Positives = 89/150 (59%), Gaps = 1/150 (0%)
Frame = +2
Query: 368 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 547
V+ + K V +TGCDSGFG LA+ L +G V A CL + G +EL + SDRL T
Sbjct: 24 VSYLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAACLTEK----GAEELRNKTSDRLET 79
Query: 548 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIST-FGDVEFTSMETYKEVAEVN 724
V L+ ++ + + +GLWGLVNNAGIS G E+ + + V +VN
Sbjct: 80 VILDVTKTESIVTATQWVKERVGN--RGLWGLVNNAGISIPSGPNEWMKKQDFAHVLDVN 137
Query: 725 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 814
L G + VT S LPL+R+A+GRV+N++S++G
Sbjct: 138 LLGLIEVTLSMLPLVRKARGRVINVASVLG 167
Score = 86.7 bits (213), Expect(2) = 4e-44
Identities = 44/108 (40%), Positives = 64/108 (58%)
Frame = +1
Query: 841 YCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIATKMWEQVPET 1020
YCI+K+GVEAFSD LR E+ GVKV+++EPG F+ T + S R+ + +W+Q
Sbjct: 176 YCISKYGVEAFSDSLRRELSYFGVKVAIIEPGFFL--TGVTSSARLCSNTQMLWDQTSSE 233
Query: 1021 VRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRY 1164
+R+ YG KY + R+ + D S V + + HALT+ P TRY
Sbjct: 234 IREIYGEKYLASYLKRLNELDKRCNKDLSLVTDCMEHALTACHPRTRY 281
>gi|21703846|ref|NP_663399.1| (NM_145424) cis-retinol/3alpha
hydroxysterol short-chain dehydrogenase-like [Mus
musculus]
Length = 318
Score = 107 bits (266), Expect(2) = 3e-43
Identities = 62/150 (41%), Positives = 87/150 (57%), Gaps = 1/150 (0%)
Frame = +2
Query: 368 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 547
V+ + K V +TGC SGFG LA+ L +G V A C + +G +EL S+RL T
Sbjct: 24 VDHLQDKYVFITGCGSGFGNLLARQLDRRGMRVLAAC----RKEEGAEELRRKTSERLET 79
Query: 548 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIST-FGDVEFTSMETYKEVAEVN 724
V L+ ++ + + +GLWGLVNNAGIS G E+ + + V +VN
Sbjct: 80 VILDVTKTESIVAATQWVKERVGN--RGLWGLVNNAGISVPSGPNEWMKKQDFASVLDVN 137
Query: 725 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 814
L G + VT S LPL+R+A+GRVVN+SSI+G
Sbjct: 138 LLGLIEVTLSMLPLVRKARGRVVNVSSILG 167
Score = 86.7 bits (213), Expect(2) = 3e-43
Identities = 44/118 (37%), Positives = 67/118 (56%)
Frame = +1
Query: 811 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 990
GR++ YCI+K+G+EAFSD LR E+ GVKV+++EPG F+ T + S R+ +
Sbjct: 167 GRVSLGGSGGYCISKYGIEAFSDSLRRELRYFGVKVAIIEPGFFL--TGMASSARLCSNI 224
Query: 991 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRY 1164
+W+Q +R+ YG KY + + + D S V + + HALT+ P TRY
Sbjct: 225 QMLWDQTSSEIREIYGEKYLASYLKNLNELDQRCNKDLSVVTDCMEHALTACHPRTRY 282
>gi|30425272|ref|NP_780721.1| (NM_175512) RIKEN cDNA C730025I08 gene
[Mus musculus]
Length = 319
Score = 107 bits (266), Expect(2) = 1e-39
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 1/147 (0%)
Frame = +2
Query: 377 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQL 556
+ K V +TGCD+GFG A+ KGF V A CL + G L + S+RL TV L
Sbjct: 27 IADKYVFITGCDTGFGNLAARTFDKKGFRVIAACLTES----GSAALKAKTSERLHTVLL 82
Query: 557 NXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGI-STFGDVEFTSMETYKEVAEVNLWG 733
+ ++S + EKGLWGL+NNAG+ ++ +++ Y+E EVNL+G
Sbjct: 83 DVTDPENVKKTAQWVKSHVG--EKGLWGLINNAGVLGVLAPTDWLTVDDYREPIEVNLFG 140
Query: 734 TVRVTKSFLPLIRRAKGRVVNISSIMG 814
+ VT + LPL+++A+GRV+N+SSI G
Sbjct: 141 LINVTLNMLPLVKKARGRVINVSSIGG 167
Score = 74.3 bits (181), Expect(2) = 1e-39
Identities = 43/118 (36%), Positives = 64/118 (53%)
Frame = +1
Query: 811 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 990
GRLA Y +K+ VE F+D LR +M GV VS +EPG F T L P +
Sbjct: 167 GRLA-FGGGGYTPSKYAVEGFNDSLRRDMKAFGVHVSCIEPGLF--KTELADPIKTTEKK 223
Query: 991 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRY 1164
+W+ + ++Q YG Y ++ + R+++ +S + D S V+ + HALTS P TRY
Sbjct: 224 LAIWKHLSPDIKQQYGEGYIEKSLHRLKSNTSSVNLDLSLVVGCMDHALTSLFPKTRY 281
>gi|6680281|ref|NP_032315.1| (NM_008289) hydroxysteroid 11-beta
dehydrogenase 2; 11(beta)-HSD2 [Mus musculus]
Length = 396
Score = 101 bits (252), Expect(2) = 2e-31
Identities = 58/151 (38%), Positives = 84/151 (55%), Gaps = 1/151 (0%)
Frame = +2
Query: 374 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQ 553
PV ++AVL+TGCD+GFG AK L + GF V A L D G EL L S RL+ +Q
Sbjct: 79 PVATRAVLITGCDTGFGKETAKKLDAMGFTVLATVL--DLNSPGALELRDLCSPRLKLLQ 136
Query: 554 LNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIS-TFGDVEFTSMETYKEVAEVNLW 730
++ ++ GLWGLVNNAG++ DV + + T+++ EVN +
Sbjct: 137 MDLTKAEDISRVLEITKA--HTASTGLWGLVNNAGLNIVVADVGLSPVATFRKCMEVNFF 194
Query: 731 GTVRVTKSFLPLIRRAKGRVVNISSIMGAWP 823
G + +TK LPL+R ++GR+V + S G P
Sbjct: 195 GALELTKGLLPLLRHSRGRIVPVGSPAGDMP 225
Score = 52.0 bits (123), Expect(2) = 2e-31
Identities = 30/112 (26%), Positives = 54/112 (47%), Gaps = 2/112 (1%)
Frame = +1
Query: 841 YCITKFGVEAFSDCLRYEMHPLGVKVSVVEPG--NFIVATSLYSPERIRAIATKMWEQVP 1014
Y +K + D E+ P G+KVS+++PG T++ E+ + + + +P
Sbjct: 232 YGTSKAAIALLMDTFGCELLPWGIKVSIIKPGCSKTAAVTNVNLWEKRKQL---LLANIP 288
Query: 1015 ETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRYHP 1170
+ Q YG Y + + + N D SPV++A+ AL + P +RY+P
Sbjct: 289 RELLQAYGADYIEHVHGQFLNSLRMALPDLSPVVDAIIDALLAAQPRSRYYP 340
>gi|6680283|ref|NP_032316.1| (NM_008290) hydroxysteroid (17-beta)
dehydrogenase 2; hydroxysteroid 17-beta dehydrogenase 2;
17 HSD type 2 [Mus musculus]
Length = 358
Score = 125 bits (315), Expect = 2e-29
Identities = 72/152 (47%), Positives = 92/152 (60%), Gaps = 1/152 (0%)
Frame = +2
Query: 374 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQ 553
PV KAVLVTG DSGFG LAKHL GF VFAG L DK G +EL S+RL +Q
Sbjct: 80 PVDQKAVLVTGADSGFGHGLAKHLDKLGFTVFAGVL--DKEGPGAEELRKHCSERLSVLQ 137
Query: 554 LNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGISTFG-DVEFTSMETYKEVAEVNLW 730
++ + +QD KGLW +VNNAG+ D E M Y++ VN +
Sbjct: 138 MDVTKPEQIKDAHSKVTEKIQD--KGLWAVVNNAGVFHLPIDGELIPMSIYRKCMAVNFF 195
Query: 731 GTVRVTKSFLPLIRRAKGRVVNISSIMGAWPM 826
GTV VTK+FLPL+R++KGR+VN+SS+ G P+
Sbjct: 196 GTVEVTKAFLPLLRKSKGRLVNVSSMGGTVPL 227
Score = 53.5 bits (127), Expect = 2e-07
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 11/135 (8%)
Frame = +1
Query: 799 QQHNGRLANVSR----------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIV 948
++ GRL NVS S Y TK + FS +R E+ GVKV ++PG F
Sbjct: 209 RKSKGRLVNVSSMGGTVPLQMTSAYAATKAALTMFSTIIRQELDKWGVKVVTIKPGGF-- 266
Query: 949 ATSLYSPERI-RAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAV 1125
T++ + I + ++ + + ++++YG+ Y + + D +PV+ +
Sbjct: 267 KTNITGSQDIWDKMEKEILDHFSKDIQENYGQDYVHTQKLIIPTLKERSNPDITPVLRDI 326
Query: 1126 THALTSTTPYTRYHP 1170
HA+++ P + Y+P
Sbjct: 327 QHAISARNPSSFYYP 341
>gi|6677697|ref|NP_033066.1| (NM_009040) retinol dehydrogenase 6;
retinol dehydrogenase type 6 [Mus musculus]
Length = 317
Score = 115 bits (288), Expect = 3e-26
Identities = 66/150 (44%), Positives = 90/150 (60%), Gaps = 1/150 (0%)
Frame = +2
Query: 368 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 547
V+ + K V +TGCDSGFG LA+ L +G V A CL + G +EL + SDRL T
Sbjct: 24 VSHLQDKYVFITGCDSGFGTLLARQLDRRGMRVLAACLTEK----GAEELRNKTSDRLET 79
Query: 548 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIST-FGDVEFTSMETYKEVAEVN 724
V L+ ++ + + +GLWGLVNNAGIST G E+ + + V +VN
Sbjct: 80 VILDVTKTESIVTATQWVKEHVGN--RGLWGLVNNAGISTPSGPNEWMKKQDFAHVLDVN 137
Query: 725 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 814
L G + VT S LPL+R+A+GRVVN+SS+MG
Sbjct: 138 LLGMIEVTLSMLPLVRKARGRVVNVSSVMG 167
Score = 88.2 bits (217), Expect = 6e-18
Identities = 49/127 (38%), Positives = 70/127 (54%), Gaps = 9/127 (7%)
Frame = +1
Query: 811 GRLANVSR---------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLY 963
GR+ NVS YCI+K+GVEAFSD LR E+ GVKV+++EPG F+ T +
Sbjct: 157 GRVVNVSSVMGRVSLFGGGYCISKYGVEAFSDSLRRELSYFGVKVAIIEPGFFL--TGVT 214
Query: 964 SPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTS 1143
S R+ + +W+Q +R+ YG KY + R+ + D S V + + HALT+
Sbjct: 215 SSARLCSNTQMLWDQTSSEIREIYGEKYLASYLKRLNKLDKRCNKDLSGVTDCMEHALTA 274
Query: 1144 TTPYTRY 1164
P TRY
Sbjct: 275 CHPRTRY 281
>gi|20147789|ref|NP_536684.1| (NM_080436) retinol dehydrogenase 1
(all trans); retinol dehydrogenase 1 (11-cis) [Mus
musculus]
Length = 317
Score = 114 bits (285), Expect = 7e-26
Identities = 65/144 (45%), Positives = 87/144 (60%), Gaps = 1/144 (0%)
Frame = +2
Query: 386 KAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQLNXX 565
K V +TGCDSGFG LA+ L +G V A CL + G +EL + SDRL TV L+
Sbjct: 30 KYVFITGCDSGFGNLLARQLDRRGMRVLAACLTEK----GAEELRNKTSDRLETVILDVT 85
Query: 566 XXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIST-FGDVEFTSMETYKEVAEVNLWGTVR 742
++ + + +GLWGLVNNAGIST G E+ + + V +VNL G +
Sbjct: 86 KTESIVAATQWVKERVGN--RGLWGLVNNAGISTPSGPNEWMKKQDFARVLDVNLLGMIE 143
Query: 743 VTKSFLPLIRRAKGRVVNISSIMG 814
VT S LPL+R+A+GRVVN+SS+MG
Sbjct: 144 VTLSMLPLVRKARGRVVNVSSVMG 167
Score = 81.6 bits (200), Expect = 5e-16
Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 9/127 (7%)
Frame = +1
Query: 811 GRLANVSR---------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLY 963
GR+ NVS YCI+K+GVEAFSD LR E+ GVKV+++EPG F T +
Sbjct: 157 GRVVNVSSVMGRMSFFGGGYCISKYGVEAFSDSLRRELSYFGVKVAIIEPGGF--KTCVT 214
Query: 964 SPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTS 1143
S +R+ + +W++ V++ YG K+ + + + D S V + + HALT+
Sbjct: 215 SSDRLSSNTKMIWDKASSEVKEIYGEKFLLFYLKNLNELDKRCNKDLSVVTDCMEHALTA 274
Query: 1144 TTPYTRY 1164
P TRY
Sbjct: 275 RHPRTRY 281
>gi|8567342|ref|NP_059501.1| (NM_017473) retinol dehydrogenase 7;
cis-Retinol/3alpha-hydroxysterol short-chain
dehydrogenase [Mus musculus]
Length = 316
Score = 114 bits (284), Expect = 9e-26
Identities = 64/149 (42%), Positives = 87/149 (57%)
Frame = +2
Query: 368 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 547
V+ + K V +TGCDSGFG LA+ L +G V A CL + G ++L + SDRL T
Sbjct: 24 VSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAACLTEK----GAEQLRNKTSDRLET 79
Query: 548 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGISTFGDVEFTSMETYKEVAEVNL 727
V L+ ++ + + +GLWGLVNNAGI F E+ E + + +VNL
Sbjct: 80 VILDVTKTESIVAATQWVKERVGN--RGLWGLVNNAGICVFAINEWLKKEDFANILDVNL 137
Query: 728 WGTVRVTKSFLPLIRRAKGRVVNISSIMG 814
G + VT S LPL+R+A+GRVVNISS MG
Sbjct: 138 LGMIEVTLSMLPLVRKARGRVVNISSSMG 166
Score = 91.3 bits (225), Expect = 7e-19
Identities = 49/127 (38%), Positives = 73/127 (56%), Gaps = 9/127 (7%)
Frame = +1
Query: 811 GRLANVSRSP---------YCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLY 963
GR+ N+S S YCI+K+GVEAFSD LR E+ GVKV+++EPG F S Y
Sbjct: 156 GRVVNISSSMGRVSLCGGGYCISKYGVEAFSDSLRREISYFGVKVAIIEPGGFRTNVSNY 215
Query: 964 SPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTS 1143
ER+ K+W+Q V++ Y + + D + +++ ++ S D S V + + HALT+
Sbjct: 216 --ERLSHSIEKLWDQTSSEVKEVYDKNFLDSYIKAIQSLTDTCSDDLSVVTDCMEHALTA 273
Query: 1144 TTPYTRY 1164
P TRY
Sbjct: 274 CHPRTRY 280
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Sep 13, 2003 12:13 AM
Number of letters in database: 7,609,334
Number of sequences in database: 16,274
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,887,149
Number of Sequences: 16274
Number of extensions: 501446
Number of successful extensions: 1814
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 1548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1763
length of database: 7,609,334
effective HSP length: 99
effective length of database: 5,998,208
effective search space used: 1757474944
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)