Search to RefSeq (Human) database
Query= 20030826C-003424 (20030826C-003424) 20030826C-003424
(1023 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,804 sequences; 10,428,096 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4504411|ref|NP_002115.1| (NM_002124) major histocompatibility... 393 e-110
Alignment gi|18641375|ref|NP_002116.2| (NM_002125) major histocompatibilit... 377 e-105
Alignment gi|17986005|ref|NP_072049.2| (NM_022555) major histocompatibilit... 369 e-102
Alignment gi|18641373|ref|NP_068818.3| (NM_021983) major histocompatibilit... 365 e-101
Alignment gi|24797069|ref|NP_002114.2| (NM_002123) major histocompatibilit... 300 6e-82
Alignment gi|33438594|ref|NP_872355.1| (NM_182549) major histocompatibilit... 276 1e-74
Alignment gi|24797076|ref|NP_002112.3| (NM_002121) major histocompatibilit... 276 1e-74
Alignment gi|4504403|ref|NP_002111.1| (NM_002120) major histocompatibility... 262 2e-70
Alignment gi|4502337|ref|NP_001176.1| (NM_001185) alpha-2-glycoprotein 1, ... 75 4e-14
Alignment gi|4504399|ref|NP_002109.1| (NM_002118) major histocompatibility... 74 2e-13
>gi|4504411|ref|NP_002115.1| (NM_002124) major histocompatibility
complex, class II, DR beta 1 precursor; HLA class II
histocompatibility antigen, DR-1 beta chain [Homo
sapiens]
Length = 266
Score = 393 bits (1009), Expect = e-110
Identities = 194/266 (72%), Positives = 215/266 (79%)
Frame = +1
Query: 67 MLHLCFSRGFWMAALTVMLVVLSPPLALARDTPPHFLFLVKDECHFFNGTERVRLLQKQY 246
M+ L G M ALTV L+VLS PLALA DT P FL+ +K ECHFFNGTERVRLL++
Sbjct: 1 MVCLKLPGGSCMTALTVTLMVLSSPLALAGDTRPRFLWQLKFECHFFNGTERVRLLERCI 60
Query: 247 YNGEEHVRFDSDVGEYRAVTELGRPDAKYWNSQKDLLEQMRAAVDTYCRHNYRILDTFLV 426
YN EE VRFDSDVGEYRAVTELGRPDA+YWNSQKDLLEQ RAAVDTYCRHNY + ++F V
Sbjct: 61 YNQEESVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
Query: 427 PRRAEPTVTVYPAKTQPLQHHNLLVCSVTGFYPGHVEVRWFRNGQEEAAGVVSTGLIPNG 606
RR EP VTVYP+KTQPLQHHNLLVCSV+GFYPG +EVRWFRNGQEE AGVVSTGLI NG
Sbjct: 121 QRRVEPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180
Query: 607 DWTFQTMVMLETVPQSGEVYSCRVEHPSLTSPVTVEWRARSESAQGKMMSXXXXXXXXXX 786
DWTFQT+VMLETVP+SGEVY+C+VEHPS+TSP+TVEWRARSESAQ KM+S
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
Query: 787 XXXXXXXIYFKNQKGRPALQPTGLLS 864
IYF+NQKG LQPTG LS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266
>gi|18641375|ref|NP_002116.2| (NM_002125) major histocompatibility
complex, class II, DR beta 5 precursor; HLA class II
histocompatibility antigen, DR-5 beta chain [Homo
sapiens]
Length = 266
Score = 377 bits (969), Expect = e-105
Identities = 187/266 (70%), Positives = 207/266 (77%)
Frame = +1
Query: 67 MLHLCFSRGFWMAALTVMLVVLSPPLALARDTPPHFLFLVKDECHFFNGTERVRLLQKQY 246
M+ L G +MA LTV L+VLS PLALA DT P FL K ECHFFNGTERVR L +
Sbjct: 1 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI 60
Query: 247 YNGEEHVRFDSDVGEYRAVTELGRPDAKYWNSQKDLLEQMRAAVDTYCRHNYRILDTFLV 426
YN EE +RFDSDVGEYRAVTELGRPDA+YWNSQKD LE RAAVDTYCRHNY + ++F V
Sbjct: 61 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV 120
Query: 427 PRRAEPTVTVYPAKTQPLQHHNLLVCSVTGFYPGHVEVRWFRNGQEEAAGVVSTGLIPNG 606
RR EP VTVYPA+TQ LQHHNLLVCSV GFYPG +EVRWFRN QEE AGVVSTGLI NG
Sbjct: 121 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG 180
Query: 607 DWTFQTMVMLETVPQSGEVYSCRVEHPSLTSPVTVEWRARSESAQGKMMSXXXXXXXXXX 786
DWTFQT+VMLETVP+SGEVY+C+VEHPS+TSP+TVEWRA+SESAQ KM+S
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL 240
Query: 787 XXXXXXXIYFKNQKGRPALQPTGLLS 864
IYFKNQKG L PTGL+S
Sbjct: 241 FLGAGLFIYFKNQKGHSGLHPTGLVS 266
>gi|17986005|ref|NP_072049.2| (NM_022555) major histocompatibility
complex, class II, DR beta 3 precursor [Homo sapiens]
Length = 266
Score = 369 bits (946), Expect = e-102
Identities = 184/266 (69%), Positives = 205/266 (76%)
Frame = +1
Query: 67 MLHLCFSRGFWMAALTVMLVVLSPPLALARDTPPHFLFLVKDECHFFNGTERVRLLQKQY 246
M+ L G +AALTV L+VLS LA A DT P FL L K ECHFFNGTERVR L + +
Sbjct: 1 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELRKSECHFFNGTERVRYLDRYF 60
Query: 247 YNGEEHVRFDSDVGEYRAVTELGRPDAKYWNSQKDLLEQMRAAVDTYCRHNYRILDTFLV 426
+N EE +RFDSDVGEYRAVTELGRP A+ WNSQKDLLEQ R VD YCRHNY + ++F V
Sbjct: 61 HNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGRVDNYCRHNYGVGESFTV 120
Query: 427 PRRAEPTVTVYPAKTQPLQHHNLLVCSVTGFYPGHVEVRWFRNGQEEAAGVVSTGLIPNG 606
RR P VTVYPAKTQPLQHHNLLVCSV+GFYPG +EVRWFRNGQEE AGVVSTGLI NG
Sbjct: 121 QRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180
Query: 607 DWTFQTMVMLETVPQSGEVYSCRVEHPSLTSPVTVEWRARSESAQGKMMSXXXXXXXXXX 786
DWTFQT+VMLETVP+SGEVY+C+VEHPS+TS +TVEWRARSESAQ KM+S
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSALTVEWRARSESAQSKMLSGVGGFVLGLL 240
Query: 787 XXXXXXXIYFKNQKGRPALQPTGLLS 864
IYF+NQKG LQPTG LS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266
>gi|18641373|ref|NP_068818.3| (NM_021983) major histocompatibility
complex, class II, DR beta 4 precursor; DRw53 beta-chain
glycoprotein [Homo sapiens]
Length = 266
Score = 365 bits (938), Expect = e-101
Identities = 180/266 (67%), Positives = 206/266 (76%)
Frame = +1
Query: 67 MLHLCFSRGFWMAALTVMLVVLSPPLALARDTPPHFLFLVKDECHFFNGTERVRLLQKQY 246
M+ L G MAALTV L VLS PLALA DT P FL K ECHF NGTERV L +
Sbjct: 1 MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60
Query: 247 YNGEEHVRFDSDVGEYRAVTELGRPDAKYWNSQKDLLEQMRAAVDTYCRHNYRILDTFLV 426
YN EE+ R++SD+GEY+AVTELGRPDA+YWNSQKDLLE+ RA VDTYCR+NY ++++F V
Sbjct: 61 YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120
Query: 427 PRRAEPTVTVYPAKTQPLQHHNLLVCSVTGFYPGHVEVRWFRNGQEEAAGVVSTGLIPNG 606
RR +P VTVYP+KTQPLQHHNLLVCSV GFYPG +EVRWFRN QEE AGVVSTGLI NG
Sbjct: 121 QRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG 180
Query: 607 DWTFQTMVMLETVPQSGEVYSCRVEHPSLTSPVTVEWRARSESAQGKMMSXXXXXXXXXX 786
DWTFQT+VMLETVP+SGEVY+C+VEHPS+ SP+TV+W ARSESAQ KM+S
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLSGVGGFVLGLL 240
Query: 787 XXXXXXXIYFKNQKGRPALQPTGLLS 864
IYF+NQKG LQPTGLLS
Sbjct: 241 FLGTGLFIYFRNQKGHSGLQPTGLLS 266
>gi|24797069|ref|NP_002114.2| (NM_002123) major histocompatibility
complex, class II, DQ beta 1 precursor [Homo sapiens]
Length = 261
Score = 300 bits (769), Expect = 6e-82
Identities = 147/247 (59%), Positives = 179/247 (71%)
Frame = +1
Query: 91 GFWMAALTVMLVVLSPPLALARDTPPHFLFLVKDECHFFNGTERVRLLQKQYYNGEEHVR 270
G A +T+ML +LS P+A RD+P F++ K C+F NGTERVRL+ + YN EE VR
Sbjct: 12 GLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNREEIVR 71
Query: 271 FDSDVGEYRAVTELGRPDAKYWNSQKDLLEQMRAAVDTYCRHNYRILDTFLVPRRAEPTV 450
FDSDVGE+RAVT LG P A+YWNSQKD+LE+ RAAVD CRHNY++ + RR EPTV
Sbjct: 72 FDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRRVEPTV 131
Query: 451 TVYPAKTQPLQHHNLLVCSVTGFYPGHVEVRWFRNGQEEAAGVVSTGLIPNGDWTFQTMV 630
T+ P++T+ L HHNLLVCSVT FYP ++VRWFRN QEE AGVVST LI NGDWTFQ +V
Sbjct: 132 TISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILV 191
Query: 631 MLETVPQSGEVYSCRVEHPSLTSPVTVEWRARSESAQGKMMSXXXXXXXXXXXXXXXXXI 810
MLE PQ G+VY+C VEHPSL SP+TVEWRA+SESAQ KM+S I
Sbjct: 192 MLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLGLGLII 251
Query: 811 YFKNQKG 831
+ ++QKG
Sbjct: 252 HHRSQKG 258
>gi|33438594|ref|NP_872355.1| (NM_182549) major histocompatibility
complex, class II, DQ beta 2 [Homo sapiens]
Length = 231
Score = 276 bits (707), Expect = 1e-74
Identities = 135/218 (61%), Positives = 161/218 (72%)
Frame = +1
Query: 91 GFWMAALTVMLVVLSPPLALARDTPPHFLFLVKDECHFFNGTERVRLLQKQYYNGEEHVR 270
GFW AA+TVMLV+LS P+A ARD P FL K C+F NGTERVR + + YN EE+ R
Sbjct: 12 GFWAAAVTVMLVMLSTPVAEARDFPKDFLVQFKGMCYFTNGTERVRGVARYIYNREEYGR 71
Query: 271 FDSDVGEYRAVTELGRPDAKYWNSQKDLLEQMRAAVDTYCRHNYRILDTFLVPRRAEPTV 450
FDSDVGE++AVTELGR + WN+ KD LEQ RAAVD CRHNY + R+ EPTV
Sbjct: 72 FDSDVGEFQAVTELGR-SIEDWNNYKDFLEQERAAVDKVCRHNYEAELRTTLQRQVEPTV 130
Query: 451 TVYPAKTQPLQHHNLLVCSVTGFYPGHVEVRWFRNGQEEAAGVVSTGLIPNGDWTFQTMV 630
T+ P++T+ L HHNLLVCSVT FYP ++V+WFRN QEE AGVVST LI NGDWTFQ +V
Sbjct: 131 TISPSRTEALNHHNLLVCSVTDFYPAQIKVQWFRNDQEETAGVVSTSLIRNGDWTFQILV 190
Query: 631 MLETVPQSGEVYSCRVEHPSLTSPVTVEWRARSESAQG 744
MLE PQ G++Y+C+VEHPSL SP+TVEWR R G
Sbjct: 191 MLEITPQRGDIYTCQVEHPSLQSPITVEWRPRGPPPAG 228
>gi|24797076|ref|NP_002112.3| (NM_002121) major histocompatibility
complex, class II, DP beta 1 precursor; HLA-DP
histocompatibility type, beta-1 subunit [Homo sapiens]
Length = 258
Score = 276 bits (706), Expect = 1e-74
Identities = 132/217 (60%), Positives = 162/217 (73%)
Frame = +1
Query: 106 ALTVMLVVLSPPLALARDTPPHFLFLVKDECHFFNGTERVRLLQKQYYNGEEHVRFDSDV 285
ALT +L+VL + R TP ++LF + EC+ FNGT+R L++ YN EE RFDSDV
Sbjct: 14 ALTALLMVLLTSVVQGRATPENYLFQGRQECYAFNGTQR--FLERYIYNREEFARFDSDV 71
Query: 286 GEYRAVTELGRPDAKYWNSQKDLLEQMRAAVDTYCRHNYRILDTFLVPRRAEPTVTVYPA 465
GE+RAVTELGRP A+YWNSQKD+LE+ RA D CRHNY + + RR +P V V P+
Sbjct: 72 GEFRAVTELGRPAAEYWNSQKDILEEKRAVPDRMCRHNYELGGPMTLQRRVQPRVNVSPS 131
Query: 466 KTQPLQHHNLLVCSVTGFYPGHVEVRWFRNGQEEAAGVVSTGLIPNGDWTFQTMVMLETV 645
K PLQHHNLLVC VT FYPG ++VRWF NGQEE AGVVST LI NGDWTFQ +VMLE
Sbjct: 132 KKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEETAGVVSTNLIRNGDWTFQILVMLEMT 191
Query: 646 PQSGEVYSCRVEHPSLTSPVTVEWRARSESAQGKMMS 756
PQ G+VY+C+VEH SL SPVTVEW+A+S+SA+ K ++
Sbjct: 192 PQQGDVYTCQVEHTSLDSPVTVEWKAQSDSARSKTLT 228
>gi|4504403|ref|NP_002111.1| (NM_002120) major histocompatibility
complex, class II, DO beta precursor; HLA class II
histocompatibility antigen, DO beta chain [Homo sapiens]
Length = 273
Score = 262 bits (670), Expect = 2e-70
Identities = 130/253 (51%), Positives = 168/253 (66%)
Frame = +1
Query: 97 WMAALTVMLVVLSPPLALARDTPPHFLFLVKDECHFFNGTERVRLLQKQYYNGEEHVRFD 276
W+ AL V L L + D+P F+ K +C+F NGTE+V+ + + +N EE+VRFD
Sbjct: 8 WVVALLVNLTRLDSSMTQGTDSPEDFVIQAKADCYFTNGTEKVQFVVRFIFNLEEYVRFD 67
Query: 277 SDVGEYRAVTELGRPDAKYWNSQKDLLEQMRAAVDTYCRHNYRILDTFLVPRRAEPTVTV 456
SDVG + A+T+LG+PDA+ WNS+ DLLE+ R AVD CRHNYR+ F V R+ +P VTV
Sbjct: 68 SDVGMFVALTKLGQPDAEQWNSRLDLLERSRQAVDGVCRHNYRLGAPFTVGRKVQPEVTV 127
Query: 457 YPAKTQPLQHHNLLVCSVTGFYPGHVEVRWFRNGQEEAAGVVSTGLIPNGDWTFQTMVML 636
YP +T L HNLL CSVTGFYPG ++++WF NGQEE AGV+STG I NGDWTFQT+VML
Sbjct: 128 YPERTPLLHQHNLLHCSVTGFYPGDIKIKWFLNGQEERAGVMSTGPIRNGDWTFQTVVML 187
Query: 637 ETVPQSGEVYSCRVEHPSLTSPVTVEWRARSESAQGKMMSXXXXXXXXXXXXXXXXXIYF 816
E P+ G VY+C V+H SL SPV+VEWRA+SE + KM+S I
Sbjct: 188 EMTPELGHVYTCLVDHSSLLSPVSVEWRAQSEYSWRKMLSGIAAFLLGLIFLLVGIVIQL 247
Query: 817 KNQKGRPALQPTG 855
+ QKG Q +G
Sbjct: 248 RAQKGYVRTQMSG 260
>gi|4502337|ref|NP_001176.1| (NM_001185) alpha-2-glycoprotein 1,
zinc; Alpha-2-glycoprotein, zinc [Homo sapiens]
Length = 298
Score = 75.5 bits (184), Expect = 4e-14
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 20/204 (9%)
Frame = +1
Query: 172 FLFLVKDECHFFNGTERVRLLQ-----------------KQYYNGEEHVRFDSDVGEYRA 300
F+ +KD ++N + +LQ K YY+G++++ F+ ++ +
Sbjct: 97 FMETLKDIVEYYNDSNGSHVLQGRFGCEIENNRSSGAFWKYYYDGKDYIEFNKEIPAWVP 156
Query: 301 VTELGRPDAKYWNSQKDLLEQMRAAVDTYCR---HNYRILDTFLVPRRAEPTVTVYPAKT 471
+ + W ++ +++ +A ++ C Y ++ R+ P+V V
Sbjct: 157 FDPAAQITKQKWEAEPVYVQRAKAYLEEECPATLRKYLKYSKNILDRQDPPSVVV--TSH 214
Query: 472 QPLQHHNLLVCSVTGFYPGHVEVRWFRNGQEEAAGVVSTGLIPNGDWTFQTMVMLETVPQ 651
Q L C FYPG ++V W R G+ + + ++ NG+ T+Q+ V++ PQ
Sbjct: 215 QAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGD-VLHNGNGTYQSWVVVAVPPQ 273
Query: 652 SGEVYSCRVEHPSLTSPVTVEWRA 723
YSC V+H SL P+ V W A
Sbjct: 274 DTAPYSCHVQHSSLAQPLVVPWEA 297
>gi|4504399|ref|NP_002109.1| (NM_002118) major histocompatibility
complex, class II, DM beta precursor; class II
histocompatibility antigen, M beta chain [Homo sapiens]
Length = 263
Score = 73.6 bits (179), Expect = 2e-13
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 6/149 (4%)
Frame = +1
Query: 289 EYRAVTELGRPDAKYWNSQKDLLEQMRAAVDTYCRHNYRILDTFLVPRRAEPTVTVYPAK 468
E+ + L +++ N + L++++R + H + L R P+V V AK
Sbjct: 65 EFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGS-LTNRTRPPSVQV--AK 121
Query: 469 TQPLQHHN--LLVCSVTGFYPGHVEVRWFRNGQ----EEAAGVVSTGLIPNGDWTFQTMV 630
T P +L C V GFYP V + W +NG+ +A + PNGDWT+QT+
Sbjct: 122 TTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQ---PNGDWTYQTLS 178
Query: 631 MLETVPQSGEVYSCRVEHPSLTSPVTVEW 717
L P G+ Y+C VEH P+ +W
Sbjct: 179 HLALTPSYGDTYTCVVEHIGAPEPILRDW 207
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Sep 13, 2003 12:13 AM
Number of letters in database: 10,428,096
Number of sequences in database: 19,804
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,859,287
Number of Sequences: 19804
Number of extensions: 744991
Number of successful extensions: 3135
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 2563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3098
length of database: 10,428,096
effective HSP length: 100
effective length of database: 8,447,696
effective search space used: 2027447040
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20030826C-003424 (20030826C-003424) 20030826C-003424
(1023 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
16,274 sequences; 7,609,334 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|6912404|ref|NP_034512.1| (NM_010382) histocompatibility 2, cl... 375 e-104
Alignment gi|31981711|ref|NP_034509.2| (NM_010379) histocompatibility 2, c... 283 1e-76
Alignment gi|29788774|ref|NP_034519.2| (NM_010389) histocompatibility 2, O... 258 3e-69
Alignment gi|6754124|ref|NP_034518.1| (NM_010388) histocompatibility 2, cl... 81 7e-16
Alignment gi|31981708|ref|NP_034517.2| (NM_010387) histocompatibility 2, c... 75 3e-14
Alignment gi|6680157|ref|NP_032235.1| (NM_008209) histocompatibility-2 com... 72 4e-13
Alignment gi|31981716|ref|NP_034508.2| (NM_010378) histocompatibility 2, c... 70 1e-12
Alignment gi|31982789|ref|NP_034511.2| (NM_010381) histocompatibility 2, c... 64 7e-11
Alignment gi|6680151|ref|NP_032232.1| (NM_008206) histocompatibility 2, O ... 64 1e-10
Alignment gi|6753836|ref|NP_034319.1| (NM_010189) Fc receptor, IgG, alpha ... 63 2e-10
>gi|6912404|ref|NP_034512.1| (NM_010382) histocompatibility 2, class
II antigen E beta [Mus musculus]
Length = 264
Score = 375 bits (964), Expect = e-104
Identities = 175/255 (68%), Positives = 209/255 (81%)
Frame = +1
Query: 100 MAALTVMLVVLSPPLALARDTPPHFLFLVKDECHFFNGTERVRLLQKQYYNGEEHVRFDS 279
+AA+ ++L VLSPP+AL RD+ P FL K ECHF+NGT+RVR L++ +YN EE++RFDS
Sbjct: 10 VAAVILLLTVLSPPVALVRDSRPWFLEYCKSECHFYNGTQRVRFLKRYFYNLEENLRFDS 69
Query: 280 DVGEYRAVTELGRPDAKYWNSQKDLLEQMRAAVDTYCRHNYRILDTFLVPRRAEPTVTVY 459
DVGE+RAVTELGRPDA+ WNSQ ++L++ RAAVDTYCRHNY I D FLVPRR EPTVTVY
Sbjct: 70 DVGEFRAVTELGRPDAENWNSQPEILDEKRAAVDTYCRHNYEIFDNFLVPRRVEPTVTVY 129
Query: 460 PAKTQPLQHHNLLVCSVTGFYPGHVEVRWFRNGQEEAAGVVSTGLIPNGDWTFQTMVMLE 639
P KTQPL+HHNLLVCSV+ FYPG++EVRWFRNG+EE G+VSTGL+ NGDWTFQT+VMLE
Sbjct: 130 PTKTQPLEHHNLLVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDWTFQTLVMLE 189
Query: 640 TVPQSGEVYSCRVEHPSLTSPVTVEWRARSESAQGKMMSXXXXXXXXXXXXXXXXXIYFK 819
TVPQSGEVY+C+VEHPSLT PVTVEW+A+S SAQ KM+S IYF+
Sbjct: 190 TVPQSGEVYTCQVEHPSLTDPVTVEWKAQSTSAQNKMLSGVGGFVLGLLFLRAGLFIYFR 249
Query: 820 NQKGRPALQPTGLLS 864
NQKG+ LQPTGLLS
Sbjct: 250 NQKGQSGLQPTGLLS 264
>gi|31981711|ref|NP_034509.2| (NM_010379) histocompatibility 2,
class II antigen A, beta 1; A beta [Mus musculus]
Length = 265
Score = 283 bits (723), Expect = 1e-76
Identities = 141/255 (55%), Positives = 174/255 (67%), Gaps = 1/255 (0%)
Frame = +1
Query: 100 MAALTVMLVVLSPPLALARDTPPHFLFLVKDECHFFNGTERVRLLQKQYYNGEEHVRFDS 279
++A V+L+VLS P D+ HF+ K EC++ NGT+R+RL+ + YN EE+VR+DS
Sbjct: 10 LSAAVVVLMVLSSPGTEGGDSERHFVVQFKGECYYTNGTQRIRLVTRYIYNREEYVRYDS 69
Query: 280 DVGEYRAVTELGRPDAKYWNSQKDLLEQMRAAVDTYCRHNYRILDTFLVPRRAE-PTVTV 456
DVGEYRAVTELGRPDA+YWNSQ ++LE+ RA VDT CRHNY + RR E P V +
Sbjct: 70 DVGEYRAVTELGRPDAEYWNSQPEILERTRAEVDTACRHNYEETEVPTSLRRLEQPNVAI 129
Query: 457 YPAKTQPLQHHNLLVCSVTGFYPGHVEVRWFRNGQEEAAGVVSTGLIPNGDWTFQTMVML 636
++T+ L HHN LVCSVT FYP ++VRWFRNGQEE GV ST LI NGDWTFQ +VML
Sbjct: 130 SLSRTEALNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNGDWTFQVLVML 189
Query: 637 ETVPQSGEVYSCRVEHPSLTSPVTVEWRARSESAQGKMMSXXXXXXXXXXXXXXXXXIYF 816
E P GEVY+C VEHPSL SP+TVEWRA+SESA+ KM+S I
Sbjct: 190 EMTPHQGEVYTCHVEHPSLKSPITVEWRAQSESARSKMLSGIGGCVLGVIFLGLGLFIRH 249
Query: 817 KNQKGRPALQPTGLL 861
++QKG P GLL
Sbjct: 250 RSQKGPRGPPPAGLL 264
>gi|29788774|ref|NP_034519.2| (NM_010389) histocompatibility 2, O
region beta locus [Mus musculus]
Length = 271
Score = 258 bits (658), Expect = 3e-69
Identities = 127/254 (50%), Positives = 164/254 (64%)
Frame = +1
Query: 88 RGFWMAALTVMLVVLSPPLALARDTPPHFLFLVKDECHFFNGTERVRLLQKQYYNGEEHV 267
R W+ AL V L+ L + RD+P +F+ K +C+F NGTE+V LL + +N EE++
Sbjct: 5 RAPWVVALLVNLMRLDSFMIEGRDSPENFVIQAKADCYFTNGTEKVHLLVRFIFNLEEYL 64
Query: 268 RFDSDVGEYRAVTELGRPDAKYWNSQKDLLEQMRAAVDTYCRHNYRILDTFLVPRRAEPT 447
FDSD+G + A+TELG PDA WN + DLLE RAAV+ CR Y++ F V R P
Sbjct: 65 HFDSDLGMFVALTELGEPDADQWNKRLDLLETSRAAVNMVCRQKYKLGAPFTVERNVPPE 124
Query: 448 VTVYPAKTQPLQHHNLLVCSVTGFYPGHVEVRWFRNGQEEAAGVVSTGLIPNGDWTFQTM 627
VTVYP +T LQ HNLL+CSVTGFYPG + V+WFRNGQEE +GV+STGL+ NGDWTFQT
Sbjct: 125 VTVYPERTPLLQQHNLLLCSVTGFYPGDISVKWFRNGQEERSGVMSTGLVRNGDWTFQTT 184
Query: 628 VMLETVPQSGEVYSCRVEHPSLTSPVTVEWRARSESAQGKMMSXXXXXXXXXXXXXXXXX 807
VMLE +P+ G++YSC VEHP L PV+V W A+SE + K++S
Sbjct: 185 VMLEMIPELGDIYSCLVEHPGLLRPVSVAWMAQSEYSWKKILSGAAVFLLGLIVFLVGVV 244
Query: 808 IYFKNQKGRPALQP 849
I+ K QK QP
Sbjct: 245 IHLKAQKASVETQP 258
>gi|6754124|ref|NP_034518.1| (NM_010388) histocompatibility 2, class
II, locus Mb2 [Mus musculus]
Length = 261
Score = 80.9 bits (198), Expect = 7e-16
Identities = 63/215 (29%), Positives = 95/215 (43%), Gaps = 9/215 (4%)
Frame = +1
Query: 100 MAALTVMLVVLSPPLALARDTPPHFLFLVKDECHFFNGTERVRLLQKQYYNGEEHVRFDS 279
MAAL ++L+VLS A H V+ C + +N + +D
Sbjct: 1 MAALWLLLLVLSLHCMGAGGFVAH----VESTCVLNDAGTPQDFTYCVSFNKDLLACWDP 56
Query: 280 DVG-----EYRAVTELGRPDAKYWNSQKDLLEQMRAAVDTYCRHNYRILDTFLVPRRAEP 444
DVG E+ ++ L + N Q+ L+ +++ + H D L R P
Sbjct: 57 DVGKIVPCEFGVLSRLAEIISNILNEQESLIHRLQNGLQDCATHTQPFWDV-LTHRTRAP 115
Query: 445 TVTVYPAKTQPLQHHN--LLVCSVTGFYPGHVEVRWFRNGQ--EEAAGVVSTGLIPNGDW 612
+V V A+T P +L C V GFYP V + W +NGQ + T PNGDW
Sbjct: 116 SVRV--AQTTPFNTREPVMLACYVWGFYPADVTITWMKNGQLVPSHSNKEKTAQ-PNGDW 172
Query: 613 TFQTMVMLETVPQSGEVYSCRVEHPSLTSPVTVEW 717
T+QT+ L P G+VY+C V+H + P+ +W
Sbjct: 173 TYQTVSYLALTPSYGDVYTCVVQHSGTSEPIRGDW 207
>gi|31981708|ref|NP_034517.2| (NM_010387) histocompatibility 2,
class II, locus Mb1 [Mus musculus]
Length = 261
Score = 75.5 bits (184), Expect = 3e-14
Identities = 61/215 (28%), Positives = 95/215 (43%), Gaps = 9/215 (4%)
Frame = +1
Query: 100 MAALTVMLVVLSPPLALARDTPPHFLFLVKDECHFFNGTERVRLLQKQYYNGEEHVRFDS 279
MAAL ++L+VLS A H V+ C + +N + +D
Sbjct: 1 MAALWLLLLVLSLDCMGAGGFVAH----VESTCVLDDAGTPQDFTYCVSFNKDLLACWDP 56
Query: 280 DVG-----EYRAVTELGRPDAKYWNSQKDLLEQMRAAVDTYCRHNYRILDTFLVPRRAEP 444
DVG E+ + ++ N ++ LL++++ + H + L R P
Sbjct: 57 DVGKIVPCEFGVLYPWAENFSRILNKEESLLQRLQNGLLDCASHTQPFWNA-LTHRTRAP 115
Query: 445 TVTVYPAKTQPLQHHN--LLVCSVTGFYPGHVEVRWFRNGQ--EEAAGVVSTGLIPNGDW 612
+V V A+T P +L C V GFYP V + W +NGQ + T PNGDW
Sbjct: 116 SVRV--AQTTPFNTREPVMLACYVWGFYPADVTITWMKNGQLVPSHSNKEKTAQ-PNGDW 172
Query: 613 TFQTMVMLETVPQSGEVYSCRVEHPSLTSPVTVEW 717
T+QT+ L P G+VY+C V+H + P+ +W
Sbjct: 173 TYQTVSYLALTPSYGDVYTCVVQHSGTSEPIRGDW 207
>gi|6680157|ref|NP_032235.1| (NM_008209) histocompatibility-2
complex class 1-like; histocompatibility-2 complex class
1-like sequence [Mus musculus]
Length = 341
Score = 71.6 bits (174), Expect = 4e-13
Identities = 44/152 (28%), Positives = 71/152 (45%), Gaps = 6/152 (3%)
Frame = +1
Query: 247 YNGEEHVRFDSDVGEYRAVTELGRPDAKYWNSQKDLLEQMRAAVDTYCRHNYRILDTFL- 423
Y+G++ + F+ D + A+ + + W + L+ + ++ C L FL
Sbjct: 132 YDGQDFIIFNKDTLSWLAMDYVAHITKQAWEANLHELQYQKNWLEEEC---IAWLKRFLE 188
Query: 424 -----VPRRAEPTVTVYPAKTQPLQHHNLLVCSVTGFYPGHVEVRWFRNGQEEAAGVVST 588
+ R P V +T P C GFYP + + W +NG+E A V
Sbjct: 189 YGRDTLERTEHPVVRTTRKETFP--GITTFFCRAHGFYPPEISMTWMKNGEEIAQEVDYG 246
Query: 589 GLIPNGDWTFQTMVMLETVPQSGEVYSCRVEH 684
G++P+GD T+QT + + PQS +VYSC VEH
Sbjct: 247 GVLPSGDGTYQTWLSVNLDPQSNDVYSCHVEH 278
>gi|31981716|ref|NP_034508.2| (NM_010378) histocompatibility 2,
class II antigen A, alpha; A alpha [Mus musculus]
Length = 256
Score = 70.1 bits (170), Expect = 1e-12
Identities = 31/92 (33%), Positives = 44/92 (47%)
Frame = +1
Query: 442 PTVTVYPAKTQPLQHHNLLVCSVTGFYPGHVEVRWFRNGQEEAAGVVSTGLIPNGDWTFQ 621
P TV+P L N L+C V +P + + W RN + A GV T N D++F
Sbjct: 114 PQATVFPKSPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFH 173
Query: 622 TMVMLETVPQSGEVYSCRVEHPSLTSPVTVEW 717
+ L +P ++Y C+VEH L PV W
Sbjct: 174 KLSYLTFIPSDDDIYDCKVEHWGLEEPVLKHW 205
>gi|31982789|ref|NP_034511.2| (NM_010381) histocompatibility 2,
class II antigen E alpha [Mus musculus]
Length = 255
Score = 64.3 bits (155), Expect = 7e-11
Identities = 32/92 (34%), Positives = 43/92 (45%)
Frame = +1
Query: 442 PTVTVYPAKTQPLQHHNLLVCSVTGFYPGHVEVRWFRNGQEEAAGVVSTGLIPNGDWTFQ 621
P VTV L N+L+C + F P V V WFRNG+ GV T +P D F+
Sbjct: 112 PEVTVLSRSPVNLGEPNILICFIDKFSPPVVNVTWFRNGRPVTEGVSETVFLPRDDHLFR 171
Query: 622 TMVMLETVPQSGEVYSCRVEHPSLTSPVTVEW 717
L +P + + Y C V+H L P+ W
Sbjct: 172 KFHYLTFLPSTDDFYDCEVDHWGLEEPLRKHW 203
>gi|6680151|ref|NP_032232.1| (NM_008206) histocompatibility 2, O
region alpha locus [Mus musculus]
Length = 250
Score = 63.5 bits (153), Expect = 1e-10
Identities = 32/92 (34%), Positives = 43/92 (45%)
Frame = +1
Query: 442 PTVTVYPAKTQPLQHHNLLVCSVTGFYPGHVEVRWFRNGQEEAAGVVSTGLIPNGDWTFQ 621
P VTV P L N+L+C V +P + V W RN Q GV T + F+
Sbjct: 113 PRVTVLPKTRVELGKPNVLICIVDDIFPPVINVTWLRNSQPITKGVAQTSFYSQPNHRFR 172
Query: 622 TMVMLETVPQSGEVYSCRVEHPSLTSPVTVEW 717
L VP + +VY C+VEH L +P+ W
Sbjct: 173 KFHYLTFVPSAEDVYDCKVEHWGLDTPLLQHW 204
>gi|6753836|ref|NP_034319.1| (NM_010189) Fc receptor, IgG, alpha
chain transporter; neonatal Fc receptor [Mus musculus]
Length = 365
Score = 63.2 bits (152), Expect = 2e-10
Identities = 48/167 (28%), Positives = 72/167 (42%), Gaps = 4/167 (2%)
Frame = +1
Query: 250 NGEEHVRFDSDVGEYRAVTELGRPDAKYWNSQKDLLEQMRAAVDTYCRHNYRILDTFLVP 429
NGEE ++F+ +G + A W Q D + + C R+L
Sbjct: 136 NGEEFMKFNPRIGNWTGEWPETEIVANLWMKQPDAARKESEFLLNSCPE--RLLGHLERG 193
Query: 430 RR----AEPTVTVYPAKTQPLQHHNLLVCSVTGFYPGHVEVRWFRNGQEEAAGVVSTGLI 597
RR EP A+ ++L C+ FYP ++ R+ RNG +G STG
Sbjct: 194 RRNLEWKEPPSMRLKARPGN-SGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTG-- 250
Query: 598 PNGDWTFQTMVMLETVPQSGEVYSCRVEHPSLTSPVTVEWRARSESA 738
PNGD +F +LE Y C+VEH L P+TV+ + + S+
Sbjct: 251 PNGDGSFHAWSLLEVKRGDEHHYQCQVEHEGLAQPLTVDLDSSARSS 297
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Sep 13, 2003 12:13 AM
Number of letters in database: 7,609,334
Number of sequences in database: 16,274
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,618,245
Number of Sequences: 16274
Number of extensions: 521407
Number of successful extensions: 2165
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 1869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2144
length of database: 7,609,334
effective HSP length: 97
effective length of database: 6,030,756
effective search space used: 1465473708
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)