Search to RefSeq (Human) database
Query= 20030826C-004517 (20030826C-004517) 20030826C-004517
(916 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,804 sequences; 10,428,096 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|23503293|ref|NP_699188.1| (NM_153357) hypothetical protein FL... 216 2e-56
Alignment gi|7019529|ref|NP_037488.1| (NM_013356) solute carrier 16 (monoc... 77 1e-14
Alignment gi|4759112|ref|NP_004198.1| (NM_004207) solute carrier family 16... 74 1e-13
Alignment gi|24431958|ref|NP_004722.2| (NM_004731) solute carrier family 1... 64 1e-10
Alignment gi|4759116|ref|NP_004686.1| (NM_004695) solute carrier family 16... 61 7e-10
Alignment gi|4759118|ref|NP_004685.1| (NM_004694) solute carrier family 16... 59 3e-09
Alignment gi|19923753|ref|NP_003042.2| (NM_003051) solute carrier family 1... 54 1e-07
Alignment gi|16507208|ref|NP_055940.2| (NM_015125) capicua homolog [Homo s... 33 0.003
Alignment gi|34365793|ref|NP_115763.2| (NM_032387) protein kinase, lysine ... 31 0.029
Alignment gi|25777671|ref|NP_002705.2| (NM_002714) protein phosphatase 1, ... 32 0.029
>gi|23503293|ref|NP_699188.1| (NM_153357) hypothetical protein
FLJ90193 [Homo sapiens]
Length = 471
Score = 216 bits (549), Expect = 2e-56
Identities = 129/275 (46%), Positives = 135/275 (48%), Gaps = 10/275 (3%)
Frame = +1
Query: 112 PSPPRTAGRG----------RAAMTPKPAGPPDXXXXXXXXXXXXXXXXXXXXXXXXXXX 261
P+P R RG + AMTP+PAGPPD
Sbjct: 2 PAPQRKHRRGGFSHRCFPTPQTAMTPQPAGPPDGGWGWVVAAAAFAINGLSYGLLRSLGL 61
Query: 262 XXXXXAEHFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVF 441
AEHFDRSAQDTAW PVGSALSTRWGARPVVMVGGVL SLGFVF
Sbjct: 62 AFPDLAEHFDRSAQDTAWISALALAVQQAASPVGSALSTRWGARPVVMVGGVLASLGFVF 121
Query: 442 SAFXXXXXXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXX 621
SAF VFAPALGTLSRYFSRRRVLAVGLALTGNG
Sbjct: 122 SAFASDLLHLYLGLGLLAGFGWALVFAPALGTLSRYFSRRRVLAVGLALTGNGASSLLLA 181
Query: 622 XXXXXXXDHFGWRXXXXXXXXXXXXXXPCGALLRXXXXXXXXXXXXRSPLAALGLNLFTR 801
D FGWR PCGALL RSPLAALGL+LFTR
Sbjct: 182 PALQLLLDTFGWRGALLLLGAITLHLTPCGALLLPLVLPGDPPAPPRSPLAALGLSLFTR 241
Query: 802 RVFLVFALGTALVGGRVLHPLRALGPSRFKSGVWG 906
R F +FALGTALVGG P L P G+ G
Sbjct: 242 RAFSIFALGTALVGGGYFVPYVHLAPHALDRGLGG 276
>gi|7019529|ref|NP_037488.1| (NM_013356) solute carrier 16
(monocarboxylic acid transporters), member 8;
monocarboxylate transporter 3 [Homo sapiens]
Length = 504
Score = 77.0 bits (188), Expect = 1e-14
Identities = 45/146 (30%), Positives = 57/146 (38%)
Frame = +1
Query: 286 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 465
FD DTAW PV S L TR+G RPV++ GG+L S G + ++F
Sbjct: 50 FDAGYSDTAWVSSIMLAMLYGTGPVSSILVTRFGCRPVMLAGGLLASAGMILASFATRLL 109
Query: 466 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 645
F P+L L YF RRR LA GLA G+ +
Sbjct: 110 ELYLTAGVLTGLGLALNFQPSLIMLGLYFERRRPLANGLAAAGSPVFLSALSPLGQQLLE 169
Query: 646 HFGWRXXXXXXXXXXXXXXPCGALLR 723
FGWR CGA++R
Sbjct: 170 RFGWRGGFLLLGGLLLHCCACGAVMR 195
>gi|4759112|ref|NP_004198.1| (NM_004207) solute carrier family 16
(monocarboxylic acid transporters), member 3;
monocarboxylate transporter 3 [Homo sapiens]
Length = 465
Score = 73.6 bits (179), Expect = 1e-13
Identities = 50/188 (26%), Positives = 74/188 (38%), Gaps = 1/188 (0%)
Frame = +1
Query: 280 EHFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXX 459
+ F DTAW P+ S R+G RPV++VGG+ SLG V ++F
Sbjct: 51 QEFGIGYSDTAWISSILLAMLYGTGPLCSVCVNRFGCRPVMLVGGLFASLGMVAASFCRS 110
Query: 460 XXXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXX 639
F P+L L+RYFS+RR +A GLA G+
Sbjct: 111 IIQVYLTTGVITGLGLALNFQPSLIMLNRYFSKRRPMANGLAAAGSPVFLCALSPLGQLL 170
Query: 640 XDHFGWRXXXXXXXXXXXXXXPCGALLRXXXXXXXXXXXXRSP-LAALGLNLFTRRVFLV 816
D +GWR C AL+R P L L++F R F++
Sbjct: 171 QDRYGWRGGFLILGGLLLNCCVCAALMRPLVVTAQPGSGPPRPSRRLLDLSVFRDRGFVL 230
Query: 817 FALGTALV 840
+A+ +++
Sbjct: 231 YAVAASVM 238
>gi|24431958|ref|NP_004722.2| (NM_004731) solute carrier family 16
(monocarboxylic acid transporters), member 7;
monocarboxylate transporter 2 [Homo sapiens]
Length = 478
Score = 63.9 bits (154), Expect = 1e-10
Identities = 37/146 (25%), Positives = 56/146 (38%)
Frame = +1
Query: 286 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 465
F + + AW PV S L ++G+RPVV+ GG+L LG V ++F
Sbjct: 51 FHTTYSEIAWISSIMLAVMYAGGPVSSVLVNKYGSRPVVIAGGLLCCLGMVLASFSSSVV 110
Query: 466 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 645
PAL + +YF R+R +A GLA+ G+ +
Sbjct: 111 QLYLTMGFITGLGLAFNLQPALTIIGKYFYRKRPMANGLAMAGSPVFLSSLAPFNQYLFN 170
Query: 646 HFGWRXXXXXXXXXXXXXXPCGALLR 723
FGW+ G+L+R
Sbjct: 171 TFGWKGSFLILGSLLLNACVAGSLMR 196
>gi|4759116|ref|NP_004686.1| (NM_004695) solute carrier family 16
(monocarboxylic acid transporters), member 5;
monocarboxylate transporter 5 [Homo sapiens]
Length = 505
Score = 61.2 bits (147), Expect = 7e-10
Identities = 42/146 (28%), Positives = 54/146 (36%)
Frame = +1
Query: 286 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 465
F S +T+W P+ S L R+G R VM+GGVL SLG V S+F
Sbjct: 45 FQASNSETSWFPSILTAVLHMAGPLCSILVGRFGCRVTVMLGGVLASLGMVASSFSHNLS 104
Query: 466 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 645
F ++ L YF RRRVLA LA G +
Sbjct: 105 QLYFTAGFITGLGMCFSFQSSITVLGFYFVRRRVLANALASMGVSLGITLWPLLSRYLLE 164
Query: 646 HFGWRXXXXXXXXXXXXXXPCGALLR 723
+ GWR CGA++R
Sbjct: 165 NLGWRGTFLVFGGIFLHCCICGAIIR 190
>gi|4759118|ref|NP_004685.1| (NM_004694) solute carrier family 16
(monocarboxylic acid transporters), member 6;
monocarboxylate transporter 6 [Homo sapiens]
Length = 523
Score = 59.3 bits (142), Expect = 3e-09
Identities = 38/148 (25%), Positives = 54/148 (35%)
Frame = +1
Query: 280 EHFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXX 459
+ F+ S +W P+ + LS R+G R VVM+GG+L S G V ++F
Sbjct: 54 DSFNESNSRISWIISICVFVLTFSAPLATVLSNRFGHRLVVMLGGLLVSTGMVAASFSQE 113
Query: 460 XXXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXX 639
F P + LS+YF +RR + +A TG
Sbjct: 114 VSHMYVAIGIISGLGYCFSFLPTVTILSQYFGKRRSIVTAVASTGECFAVFAFAPAIMAL 173
Query: 640 XDHFGWRXXXXXXXXXXXXXXPCGALLR 723
+ GWR GALLR
Sbjct: 174 KERIGWRYSLLFVGLLQLNIVIFGALLR 201
>gi|19923753|ref|NP_003042.2| (NM_003051) solute carrier family 16
(monocarboxylic acid transporters), member 1 [Homo
sapiens]
Length = 500
Score = 53.9 bits (128), Expect = 1e-07
Identities = 35/146 (23%), Positives = 54/146 (36%)
Frame = +1
Query: 286 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 465
F + + +W P+ S L ++G+R V++VGG L+ G + ++F
Sbjct: 51 FHATTSEVSWISSIMLAVMYGGGPISSILVNKYGSRIVMIVGGCLSGCGLIAASFCNTVQ 110
Query: 466 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 645
PAL + +YF +RR LA GLA+ G+
Sbjct: 111 QLYVCIGVIGGLGLAFNLNPALTMIGKYFYKRRPLANGLAMAGSPVFLCTLAPLNQVFFG 170
Query: 646 HFGWRXXXXXXXXXXXXXXPCGALLR 723
FGWR GAL+R
Sbjct: 171 IFGWRGSFLILGGLLLNCCVAGALMR 196
>gi|16507208|ref|NP_055940.2| (NM_015125) capicua homolog [Homo
sapiens]
Length = 1608
Score = 33.5 bits (75), Expect(2) = 0.003
Identities = 18/47 (38%), Positives = 20/47 (42%)
Frame = +1
Query: 40 RHSLPSGAPPARKAGRKPGRAIPRPSPPRTAGRGRAAMTPKPAGPPD 180
R + A P + PG P P PP T A TP PAG PD
Sbjct: 1515 RQKIMQAATPTEQP---PGAEAPLPVPPPTGTAAAPAPTPSPAGGPD 1558
Score = 24.6 bits (52), Expect(2) = 0.003
Identities = 11/23 (47%), Positives = 12/23 (51%), Gaps = 2/23 (8%)
Frame = +2
Query: 155 PPSQPDPRTGAGAGWWR--PQPS 217
PP P P +G G W PQPS
Sbjct: 1573 PPLPPPPESGPGQPGWEGAPQPS 1595
>gi|34365793|ref|NP_115763.2| (NM_032387) protein kinase, lysine
deficient 4; putative protein kinase WNK4 [Homo sapiens]
Length = 1243
Score = 30.8 bits (68), Expect(2) = 0.029
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 12/55 (21%)
Frame = +1
Query: 52 PSGAPPARKAGRKPGRAIPRPSPPRTAGRGR------------AAMTPKPAGPPD 180
P PP R+A R G+A PRP R + R A+ P P PPD
Sbjct: 34 PRLGPPPRRARRFSGKAEPRPRSSRLSRRSSVDLGLLSSWSLPASPAPDPPDPPD 88
Score = 23.9 bits (50), Expect(2) = 0.029
Identities = 15/52 (28%), Positives = 20/52 (37%), Gaps = 9/52 (17%)
Frame = +2
Query: 158 PSQPDPRTGAGAGWWR---------PQPSW*MGSPTGCYAPWASPSLTSRSI 286
P PDP AG G R P+ +W G+P A P L ++
Sbjct: 81 PDPPDPPDSAGPGPARSPPPSSKEPPEGTWTEGAPVKAAEDSARPELPDSAV 132
>gi|25777671|ref|NP_002705.2| (NM_002714) protein phosphatase 1,
regulatory subunit 10; phosphatase nuclear targeting
subunit [Homo sapiens]
Length = 940
Score = 32.3 bits (72), Expect = 0.35
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 13/54 (24%)
Frame = +3
Query: 300 SGHCVGQRPG--LGGAAGSQP-----------SGQRPEHPLGGAPGCDGWRRPH 422
SGH + PG +GG G +P SG RP GG G G RPH
Sbjct: 779 SGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPH 832
Score = 31.6 bits (70), Expect = 0.60
Identities = 18/41 (43%), Positives = 20/41 (47%)
Frame = +3
Query: 300 SGHCVGQRPGLGGAAGSQPSGQRPEHPLGGAPGCDGWRRPH 422
SGH + PG G AG G RP GG+ G G RPH
Sbjct: 811 SGHRPHEGPGGGMGAGG---GHRPHEGPGGSMGGSGGHRPH 848
Score = 31.2 bits (69), Expect(2) = 0.029
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +3
Query: 303 GHCVGQRPGLGGAAGSQPSGQRPEHPLGGAPGCDGWRRPH 422
G+ G RP G G SG RP GG+ G G RPH
Sbjct: 762 GNSSGHRPH-EGPGGGMGSGHRPHEGPGGSMGGGGGHRPH 800
Score = 25.4 bits (54), Expect(2) = 2.6
Identities = 17/45 (37%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Frame = +3
Query: 297 RSGHCVGQRP-GLGGAAGSQPSG--QRPEHPLGGAPGCDGWRRPH 422
R G G P G GG G G RP GG G RPH
Sbjct: 726 RGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPH 770
Score = 23.5 bits (49), Expect(2) = 0.029
Identities = 14/43 (32%), Positives = 17/43 (38%)
Frame = +1
Query: 52 PSGAPPARKAGRKPGRAIPRPSPPRTAGRGRAAMTPKPAGPPD 180
P P R G + G P P PP RG + GPP+
Sbjct: 698 PGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRS----GGGPPN 736
Score = 22.3 bits (46), Expect(2) = 2.6
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Frame = +1
Query: 34 PSRHSLPSGAPPARKAGRKPGRAIPRPSP-PRTAGRG-RAAMTPKPAGPP 177
P R P P P R P P P P GRG R P P PP
Sbjct: 672 PPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPP 721
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Sep 13, 2003 12:13 AM
Number of letters in database: 10,428,096
Number of sequences in database: 19,804
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,849,136
Number of Sequences: 19804
Number of extensions: 516130
Number of successful extensions: 4247
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 2448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4144
length of database: 10,428,096
effective HSP length: 99
effective length of database: 8,467,500
effective search space used: 1735837500
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20030826C-004517 (20030826C-004517) 20030826C-004517
(916 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
16,274 sequences; 7,609,334 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|23346495|ref|NP_694721.1| (NM_153081) cDNA sequence AB041591 ... 146 9e-36
Alignment gi|29336097|ref|NP_758959.1| (NM_172371) RIKEN cDNA 1700007D07 [... 92 3e-21
Alignment gi|13507630|ref|NP_109621.1| (NM_030696) solute carrier family 1... 78 4e-15
Alignment gi|10048452|ref|NP_065262.1| (NM_020516) solute carrier family 1... 73 2e-13
Alignment gi|27370260|ref|NP_766426.1| (NM_172838) expressed sequence AW21... 72 3e-13
Alignment gi|19527254|ref|NP_598799.1| (NM_134038) solute carrier family 1... 70 1e-12
Alignment gi|6755536|ref|NP_035521.1| (NM_011391) solute carrier family 16... 62 2e-10
Alignment gi|6677995|ref|NP_033222.1| (NM_009196) solute carrier family 16... 56 2e-08
Alignment gi|27229004|ref|NP_080083.2| (NM_025807) RIKEN cDNA 1200003C15 [... 43 1e-04
Alignment gi|16507202|ref|NP_082158.1| (NM_027882) capicua homolog [Mus mu... 32 0.007
>gi|23346495|ref|NP_694721.1| (NM_153081) cDNA sequence AB041591
[Mus musculus]
Length = 290
Score = 146 bits (369), Expect = 9e-36
Identities = 85/168 (50%), Positives = 88/168 (51%)
Frame = +1
Query: 403 MVGGVLTSLGFVFSAFXXXXXXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGL 582
MVGGVLTSLG VFSAF VFAPALGTLSRYFSRRRVLAVGL
Sbjct: 1 MVGGVLTSLGLVFSAFARSLLHLYLGLGLLAGSGWALVFAPALGTLSRYFSRRRVLAVGL 60
Query: 583 ALTGNGXXXXXXXXXXXXXXDHFGWRXXXXXXXXXXXXXXPCGALLRXXXXXXXXXXXXR 762
ALTGNG D FGWR PCGALLR R
Sbjct: 61 ALTGNGASSLLLAPALQFLLDTFGWRGALLLLGAVTLHLTPCGALLRPLALSGDPLAPPR 120
Query: 763 SPLAALGLNLFTRRVFLVFALGTALVGGRVLHPLRALGPSRFKSGVWG 906
+PLAALGL LF RR F VFALGTAL+GG P LGP G+ G
Sbjct: 121 TPLAALGLGLFKRRAFSVFALGTALIGGGYFVPYVHLGPHALDQGMGG 168
>gi|29336097|ref|NP_758959.1| (NM_172371) RIKEN cDNA 1700007D07 [Mus
musculus]
Length = 428
Score = 92.4 bits (228), Expect(2) = 3e-21
Identities = 49/146 (33%), Positives = 64/146 (43%)
Frame = +1
Query: 286 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 465
F+ A +W P+GSALST+ G RPVVM GG+L +LG + ++F
Sbjct: 45 FEEQAARVSWIASIGIAVQQFGSPIGSALSTKLGPRPVVMTGGILAALGMLLASFATSLT 104
Query: 466 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 645
F P + LSRYFS+RR LA+GLALTG G +
Sbjct: 105 HLYLSIGLLSGSGWALTFTPTMACLSRYFSQRRSLAMGLALTGVGISSFAFAPLFQWLIN 164
Query: 646 HFGWRXXXXXXXXXXXXXXPCGALLR 723
++ WR CGALLR
Sbjct: 165 NYAWRGALLLVSALSLHLMACGALLR 190
Score = 26.9 bits (58), Expect(2) = 3e-21
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +2
Query: 848 GYFIPYVHLAPHALNRG 898
G+FIPYVHL H + G
Sbjct: 229 GFFIPYVHLVAHLQDLG 245
>gi|13507630|ref|NP_109621.1| (NM_030696) solute carrier family 16
(monocarboxylic acid transporters), member 3;
monocarboxylate transporter 4 [Mus musculus]
Length = 470
Score = 78.2 bits (191), Expect = 4e-15
Identities = 51/184 (27%), Positives = 74/184 (39%), Gaps = 5/184 (2%)
Frame = +1
Query: 304 DTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXXXXXXXX 483
DTAW P+ S R+G RPV++VGG+ SLG V ++F
Sbjct: 59 DTAWISSILLAMLYGTGPLCSVCVNRFGCRPVMLVGGLFASLGMVAASFCRSIIQIYLTT 118
Query: 484 XXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXDHFGWRX 663
F P+L L+RYF++RR +A GLA G+ DH+GWR
Sbjct: 119 GVITGLGLALNFQPSLIMLNRYFNKRRPIANGLAAAGSPVFLCALSPLGQLLQDHYGWRG 178
Query: 664 XXXXXXXXXXXXXPCGALLRXXXXXXXXXXX-----XRSPLAALGLNLFTRRVFLVFALG 828
C AL+R R P L L++F R FL++A+
Sbjct: 179 GFLILGGLLLNCCVCAALMRPLVAPQVGGGTEPRGPQRPPQRLLDLSVFRDRGFLIYAVA 238
Query: 829 TALV 840
+++
Sbjct: 239 ASIM 242
>gi|10048452|ref|NP_065262.1| (NM_020516) solute carrier family 16
(monocarboxylic acid transporters), member 8;
proton-coupled monocarboxylate transporter 3 gene;
proton-coupled monocarboxylate transporter 3 [Mus
musculus]
Length = 492
Score = 72.8 bits (177), Expect = 2e-13
Identities = 43/146 (29%), Positives = 56/146 (37%)
Frame = +1
Query: 286 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 465
F DTAW P+ S L TR+G RPV++ GG+L S G + ++F
Sbjct: 50 FGAGYSDTAWVSSIMLAMLYGTGPLSSILVTRFGCRPVMLAGGLLASAGMILASFASRLV 109
Query: 466 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 645
F P+L L YF RRR LA GLA G+ +
Sbjct: 110 ELYLTAGVLTGLGLALNFQPSLIMLGLYFERRRPLANGLAAAGSPVFLSMLSPLGQLLGE 169
Query: 646 HFGWRXXXXXXXXXXXXXXPCGALLR 723
FGWR CGA++R
Sbjct: 170 RFGWRGGFLLFGGLLLHCCACGAVMR 195
>gi|27370260|ref|NP_766426.1| (NM_172838) expressed sequence
AW210596 [Mus musculus]
Length = 486
Score = 72.0 bits (175), Expect = 3e-13
Identities = 37/147 (25%), Positives = 60/147 (40%)
Frame = +1
Query: 283 HFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXX 462
+F + TAW P+GS +S + + +M+GG+L S GF+ +F
Sbjct: 49 YFAQDYSQTAWIHSIVDCMTMLCAPLGSVVSNQLSCQAGIMLGGLLASTGFILGSFATSL 108
Query: 463 XXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXX 642
++PA+ + +YFSRR+ LA G+A++G+G
Sbjct: 109 KHLYLSLGVLTGLGFALCYSPAIAMVGKYFSRRKALAYGIAMSGSGIGTFILAPVVQLLI 168
Query: 643 DHFGWRXXXXXXXXXXXXXXPCGALLR 723
+ F WR CGAL+R
Sbjct: 169 EQFSWRGALLILGGFVLNLCVCGALMR 195
>gi|19527254|ref|NP_598799.1| (NM_134038) solute carrier family 16
(monocarboxylic acid transporters), member 6;
monocarboxylate transporter 6; solute carrier family 16,
member 6 [Mus musculus]
Length = 523
Score = 69.7 bits (169), Expect = 1e-12
Identities = 41/148 (27%), Positives = 56/148 (37%)
Frame = +1
Query: 280 EHFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXX 459
+ FD S +W P+ + LS R+G R VVM GG+L SLG + ++F
Sbjct: 54 DSFDESNSKISWIISICVFVLTFTAPLSTVLSNRFGHRLVVMAGGLLISLGMITASFSQR 113
Query: 460 XXXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXX 639
F P + LS+YF +RR + +A TG
Sbjct: 114 VYHMYISIGVISGLGYCFSFLPTVTILSQYFDKRRSVVTAVASTGECFAVFAFAPAITAL 173
Query: 640 XDHFGWRXXXXXXXXXXXXXXPCGALLR 723
+H GWR CGALLR
Sbjct: 174 KEHIGWRYSLLFVGLLQLNIMVCGALLR 201
>gi|6755536|ref|NP_035521.1| (NM_011391) solute carrier family 16
(monocarboxylic acid transporters), member 7 [Mus
musculus]
Length = 484
Score = 62.4 bits (150), Expect = 2e-10
Identities = 35/148 (23%), Positives = 57/148 (37%)
Frame = +1
Query: 280 EHFDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXX 459
E F+ ++ AW P+ S L +G+RPVV+VGG+L +G + +++
Sbjct: 50 EIFNTTSSQIAWISSIMLAVMYAGGPISSVLVNNYGSRPVVIVGGLLCCIGMILASYSNS 109
Query: 460 XXXXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXX 639
PAL + +YF RRR LA G A+ G+
Sbjct: 110 VIELYLTVGFIGGLGLAFNLQPALTIIGKYFYRRRPLANGCAMAGSPVFLSTLAPFNQYL 169
Query: 640 XDHFGWRXXXXXXXXXXXXXXPCGALLR 723
+++GW+ G L+R
Sbjct: 170 FNNYGWKGSFLILGGIFLHSCVAGCLMR 197
>gi|6677995|ref|NP_033222.1| (NM_009196) solute carrier family 16
(monocarboxylic acid transporters), member 1 [Mus
musculus]
Length = 493
Score = 55.8 bits (133), Expect = 2e-08
Identities = 33/146 (22%), Positives = 54/146 (36%)
Frame = +1
Query: 286 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 465
F + + +W P+ S L ++G+RPV++ GG L+ G + ++F
Sbjct: 51 FSATTSEVSWISSIMLAVMYAGGPISSILVNKYGSRPVMIAGGCLSGCGLIAASFCNTVQ 110
Query: 466 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 645
PAL + +YF ++R LA GLA+ G+ D
Sbjct: 111 ELYLCIGVIGGLGLAFNLNPALTMIGKYFYKKRPLANGLAMAGSPVFLSTLAPLNQAFFD 170
Query: 646 HFGWRXXXXXXXXXXXXXXPCGALLR 723
F WR G+L+R
Sbjct: 171 IFDWRGSFLILGGLLLNCCVAGSLMR 196
>gi|27229004|ref|NP_080083.2| (NM_025807) RIKEN cDNA 1200003C15 [Mus
musculus]
Length = 508
Score = 43.1 bits (100), Expect = 1e-04
Identities = 31/146 (21%), Positives = 47/146 (31%)
Frame = +1
Query: 286 FDRSAQDTAWXXXXXXXXXXXXXPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFXXXXX 465
F TAW PV S + +GARPV + G L + G + S+
Sbjct: 44 FGEGKGKTAWVGSLASGVGLLASPVCSLFVSSFGARPVTIFSGFLVAGGLMLSSLAPNIY 103
Query: 466 XXXXXXXXXXXXXXXXVFAPALGTLSRYFSRRRVLAVGLALTGNGXXXXXXXXXXXXXXD 645
++ + +YF RR LA+GL TG+ +
Sbjct: 104 FLFFSYGIVVGLGCGLLYTATVTITCQYFDSRRGLALGLISTGSSVGLFIYAALQRMLIE 163
Query: 646 HFGWRXXXXXXXXXXXXXXPCGALLR 723
+G CG+L+R
Sbjct: 164 FYGLDGCLLIVGALALNILACGSLMR 189
>gi|16507202|ref|NP_082158.1| (NM_027882) capicua homolog [Mus
musculus]
Length = 1606
Score = 32.3 bits (72), Expect(2) = 0.007
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +1
Query: 40 RHSLPSGAPPARKAGRKPGRAIPRPSPPRTAGRGRAAMTPKPAGPPD 180
R + A P + PG P P PP T TP PAG PD
Sbjct: 1513 RQKIMQAATPTEQP---PGAEAPLPGPPPTGMAATPVPTPSPAGGPD 1556
Score = 23.9 bits (50), Expect(2) = 0.007
Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Frame = +2
Query: 155 PPSQPDPRTGAGAGWWR--PQPS 217
PP P P G G W PQPS
Sbjct: 1571 PPLPPPPEPGPGQPGWEGAPQPS 1593
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Sep 13, 2003 12:13 AM
Number of letters in database: 7,609,334
Number of sequences in database: 16,274
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,254,617
Number of Sequences: 16274
Number of extensions: 340823
Number of successful extensions: 2539
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 1550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2456
length of database: 7,609,334
effective HSP length: 96
effective length of database: 6,047,030
effective search space used: 1257782240
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)