Search to RefSeq (Human) database
Query= 20030826C-005923 (20030826C-005923) 20030826C-005923
(1177 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,804 sequences; 10,428,096 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|7705807|ref|NP_057119.1| (NM_016035) CGI-92 protein [Homo sap... 70 2e-13
Alignment gi|19923466|ref|NP_057417.2| (NM_016333) splicing coactivator su... 39 0.007
Alignment gi|15149479|ref|NP_149162.1| (NM_033150) alpha 1 type II collage... 38 0.009
Alignment gi|13435125|ref|NP_001835.2| (NM_001844) alpha 1 type II collage... 38 0.009
Alignment gi|4502951|ref|NP_000081.1| (NM_000090) alpha 1 type III collage... 37 0.020
Alignment gi|19923771|ref|NP_005528.2| (NM_005537) inhibitor of growth fam... 37 0.020
Alignment gi|11761629|ref|NP_068657.1| (NM_021871) fibrinogen, alpha chain... 37 0.026
Alignment gi|4503689|ref|NP_000499.1| (NM_000508) fibrinogen, alpha chain ... 37 0.026
Alignment gi|16554579|ref|NP_000084.2| (NM_000093) alpha 1 type V collagen... 36 0.035
Alignment gi|7669504|ref|NP_002421.2| (NM_002430) meningioma 1; meningiom... 35 0.059
>gi|7705807|ref|NP_057119.1| (NM_016035) CGI-92 protein [Homo
sapiens]
Length = 265
Score = 69.7 bits (169), Expect(2) = 2e-13
Identities = 34/49 (69%), Positives = 38/49 (77%)
Frame = +2
Query: 428 ADVPLRATSHGTGLLYPEHIPTSLLQKALLAAGSAVMALYDPYRHGKAA 574
A++PLRA S G G LY H+PTS LQKALLAAGSA MALY+PYRH A
Sbjct: 23 AEMPLRARSDGAGPLYSHHLPTSPLQKALLAAGSAAMALYNPYRHDMVA 71
Score = 23.9 bits (50), Expect(2) = 2e-13
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 286 MATLLRGALRPLRAFQGRGQPAA 354
MATLLR LR L G +PAA
Sbjct: 1 MATLLRPVLRRLCGLPGLQRPAA 23
>gi|19923466|ref|NP_057417.2| (NM_016333) splicing coactivator subunit
SRm300; RNA binding protein; AT-rich element binding
factor [Homo sapiens]
Length = 2752
Score = 38.5 bits (88), Expect = 0.007
Identities = 40/152 (26%), Positives = 57/152 (37%), Gaps = 4/152 (2%)
Frame = -3
Query: 671 NGGFDSGRD-LPGTSKARVSLPPPPPSQENARRG---QPYRGDKGRRGPLRQSPRPTAPS 504
+G GR P S + S P PP ARRG P K R P R+S R ++P
Sbjct: 1638 SGSSSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSR-SSPE 1696
Query: 503 AAGKWGCVXXXXXRCHGSWHEGAHLRGKKKAARSKEPGDASTPTSPRHLPAAGCPRPWKA 324
K A L + ++A S + TP R P+ P P +
Sbjct: 1697 LTRK------------------ARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEK 1738
Query: 323 RRGRRAPRSSVAMAAGTVGRPREDGKGKANAP 228
R R RS+ + T R +G++ +P
Sbjct: 1739 SRSSRRRRSASSPRTKTTSR-----RGRSPSP 1765
Score = 28.9 bits (63), Expect = 5.5
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 443 EGAHLRGKKKAARSKEPGDASTPTSPRHLPAAGCPRPWKARRGRRAP 303
E + +++ RS+ P PTS + + P PWK R R +P
Sbjct: 1829 ESSRTSSRRRRGRSRTP-----PTSRKRSRSRTSPAPWKRSRSRASP 1870
>gi|15149479|ref|NP_149162.1| (NM_033150) alpha 1 type II collagen
isoform 2, preproprotein; collagen II, alpha-1
polypeptide; cartilage collagen; chondrocalcin, included;
COL11A3, formerly [Homo sapiens]
Length = 1418
Score = 38.1 bits (87), Expect = 0.009
Identities = 52/182 (28%), Positives = 64/182 (34%), Gaps = 18/182 (9%)
Frame = -3
Query: 680 PKGNGGFDSGRDLPGT-----------SKARVSLPPPPPSQENARRGQPYRGDKGRRGPL 534
P+G G D GR L G K V PP P AR RG+ G GP
Sbjct: 706 PEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVG-PPGPAGSAGARGAPGERGETGPPGPA 764
Query: 533 RQSPRPTA---PSAAGKWGCVXXXXXRCHGSWHEGAHLRGKKKAARSKEPGDASTPTSPR 363
+ P A P A G+ G A +G A + P A P P
Sbjct: 765 GFAGPPGADGQPGAKGEQG---------------EAGQKGDAGAPGPQGPSGAPGPQGP- 808
Query: 362 HLPAAGCPRPWKARRGRRAPRSSVAM--AAGTVGRPREDGKGKANAPDFPD--DGAPEKS 195
G P K RG + P + AAG VG P +G P P DG P+ +
Sbjct: 809 ----TGVTGP-KGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDG-PKGA 862
Query: 194 KG 189
+G
Sbjct: 863 RG 864
>gi|13435125|ref|NP_001835.2| (NM_001844) alpha 1 type II collagen
isoform 1; collagen II, alpha-1 polypeptide; cartilage
collagen; chondrocalcin, included; COL11A3, formerly
[Homo sapiens]
Length = 1487
Score = 38.1 bits (87), Expect = 0.009
Identities = 52/182 (28%), Positives = 64/182 (34%), Gaps = 18/182 (9%)
Frame = -3
Query: 680 PKGNGGFDSGRDLPGT-----------SKARVSLPPPPPSQENARRGQPYRGDKGRRGPL 534
P+G G D GR L G K V PP P AR RG+ G GP
Sbjct: 775 PEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVG-PPGPAGSAGARGAPGERGETGPPGPA 833
Query: 533 RQSPRPTA---PSAAGKWGCVXXXXXRCHGSWHEGAHLRGKKKAARSKEPGDASTPTSPR 363
+ P A P A G+ G A +G A + P A P P
Sbjct: 834 GFAGPPGADGQPGAKGEQG---------------EAGQKGDAGAPGPQGPSGAPGPQGP- 877
Query: 362 HLPAAGCPRPWKARRGRRAPRSSVAM--AAGTVGRPREDGKGKANAPDFPD--DGAPEKS 195
G P K RG + P + AAG VG P +G P P DG P+ +
Sbjct: 878 ----TGVTGP-KGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDG-PKGA 931
Query: 194 KG 189
+G
Sbjct: 932 RG 933
>gi|4502951|ref|NP_000081.1| (NM_000090) alpha 1 type III collagen;
Collagen III, alpha-1 polypeptide; collagen, fetal [Homo
sapiens]
Length = 1466
Score = 37.0 bits (84), Expect = 0.020
Identities = 51/184 (27%), Positives = 63/184 (33%), Gaps = 2/184 (1%)
Frame = -3
Query: 674 GNGGFDSGRDLPGTSKARVSLPPPPPSQENARRGQPYRGDKGRRGPLRQSPRPTAPSAAG 495
G GF R LPG + + PP PS G P G G GP + P +P +G
Sbjct: 870 GAAGFPGARGLPGPPGSNGNPGPPGPS------GSP--GKDGPPGPAGNTGAPGSPGVSG 921
Query: 494 KWGCVXXXXXRCHGSWHEGAHLRGKKKAARSKEPGDASTPTSPRHLPAAGC--PRPWKAR 321
G A G+K + PG P +P L AG R
Sbjct: 922 PKG---------------DAGQPGEKGS-----PGAQGPPGAPGPLGIAGITGARGLAGP 961
Query: 320 RGRRAPRSSVAMAAGTVGRPREDGKGKANAPDFPDDGAPEKSKGLDSYGAE*GFFLREGG 141
G PR S G G E GK AN + P +GL G R+G
Sbjct: 962 PGMPGPRGS----PGPQGVKGESGKPGANG--LSGERGPPGPQGLPGLAGTAGEPGRDGN 1015
Query: 140 KGTD 129
G+D
Sbjct: 1016 PGSD 1019
Score = 32.7 bits (73), Expect = 0.38
Identities = 42/163 (25%), Positives = 52/163 (31%), Gaps = 6/163 (3%)
Frame = -3
Query: 674 GNGGFDSGRDLPGTSKARVSLPPPPP---SQENARRGQP-YRGDKGRRGPLRQSPRPTAP 507
G G G PG + + PP P + +G P RG G GP P P
Sbjct: 690 GAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGP 749
Query: 506 SAAGKWGCVXXXXXRCHGSWHEGAHLRGKKKAARSKEPGDASTPTSPRHLPAAGCPRPWK 327
A G G G + A + + G+ P LP PR
Sbjct: 750 GADGVPGK--------DGPRGPTGPIGPPGPAGQPGDKGEGGAPG----LPGIAGPRGSP 797
Query: 326 ARRGRRAPRSSVAM--AAGTVGRPREDGKGKANAPDFPDDGAP 204
RG P A G G P GKG+ AP +G P
Sbjct: 798 GERGETGPPGPAGFPGAPGQNGEP--GGKGERGAPGEKGEGGP 838
Score = 28.1 bits (61), Expect = 9.4
Identities = 43/174 (24%), Positives = 58/174 (32%), Gaps = 14/174 (8%)
Frame = -3
Query: 608 PPPPSQENARRGQP----YRGDKGRRGPLRQSPRPTAPSAAGKWGCVXXXXXRCHGSWHE 441
PP P + G P Y+G G G S P P A G G
Sbjct: 181 PPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPA------------- 227
Query: 440 GAHLRGKK-KAARSKEPGDASTPTSPRHLPAAGCP--------RPWKARRGRRAPRSSVA 288
GK ++ R PG+ P P AG P R + R G + +
Sbjct: 228 -----GKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPG 282
Query: 287 MAAGTVGRPREDGKGKANAPDFPDDGAPEKSK-GLDSYGAE*GFFLREGGKGTD 129
+ G G P E+G A P P E+ + GL G +G +G+D
Sbjct: 283 L-KGENGLPGENG---APGPMGPRGAPGERGRPGLPGAAGARG---NDGARGSD 329
>gi|19923771|ref|NP_005528.2| (NM_005537) inhibitor of growth
family, member 1; inhibitor of growth 1 [Homo sapiens]
Length = 422
Score = 37.0 bits (84), Expect = 0.020
Identities = 40/135 (29%), Positives = 50/135 (36%), Gaps = 18/135 (13%)
Frame = +2
Query: 284 PW---RRCCAGPCAPSA----------PSKAA-----GSRLQASGGGWSACWRPPALLTA 409
PW RC GPC+ + PSK+A GSR G G + W PP L A
Sbjct: 64 PWIGSSRCWGGPCSSALRCGWFSSWPPPSKSAIPIGGGSR----GAGRVSRWPPPHWLEA 119
Query: 410 RPFSCLADVPLRATSHGTGLLYPEHIPTSLLQKALLAAGSAVMALYDPYRHGKAARAWRS 589
S PL + G G + IP L A G + P G A R +++
Sbjct: 120 WRVSPRPLSPLSPATFGRGFIAVAVIP------GLWARGRGCSSDRLPRPAGPARRQFQA 173
Query: 590 LGRAGEGGGSPLPWK 634
G G PWK
Sbjct: 174 ASLLTRGWGRAWPWK 188
>gi|11761629|ref|NP_068657.1| (NM_021871) fibrinogen, alpha chain
isoform alpha preproprotein [Homo sapiens]
Length = 644
Score = 36.6 bits (83), Expect = 0.026
Identities = 50/191 (26%), Positives = 68/191 (35%), Gaps = 26/191 (13%)
Frame = -3
Query: 668 GGFDSG-RDLPGTSKARVSLPPPPPSQENARRGQPYRGDKGRRGPLRQSPRPTAPSAAGK 492
G F S + +P KA +P E + RG G ++ P PS+AG
Sbjct: 235 GNFKSQLQKVPPEWKALTDMPQMRMELERPGGNEITRGGSTSYGTGSETESPRNPSSAGS 294
Query: 491 W-------GCVXXXXXRCHG-----SWHEGAHLRGKKKAARSKEPGDAST----PTSPRH 360
W G G +W G+ G + S G ST P SPR
Sbjct: 295 WNSGSSGPGSTGNRNPGSSGTGGTATWKPGSSGPGSTGSWNSGSSGTGSTGNQNPGSPRP 354
Query: 359 LPAAGCPRPWKARRGRRAPRSSVAMAAGTVG---------RPREDGKGKANAPDFPDDGA 207
+ G P + RG +S + +G+ G RP G G A P+ PD G
Sbjct: 355 -GSTGTWNPGSSERGSAGHWTSESSVSGSTGQWHSESGSFRPDSPGSGNAR-PNNPDWGT 412
Query: 206 PEKSKGLDSYG 174
E+ G S G
Sbjct: 413 FEEVSGNVSPG 423
>gi|4503689|ref|NP_000499.1| (NM_000508) fibrinogen, alpha chain
isoform alpha-E preproprotein [Homo sapiens]
Length = 866
Score = 36.6 bits (83), Expect = 0.026
Identities = 50/191 (26%), Positives = 68/191 (35%), Gaps = 26/191 (13%)
Frame = -3
Query: 668 GGFDSG-RDLPGTSKARVSLPPPPPSQENARRGQPYRGDKGRRGPLRQSPRPTAPSAAGK 492
G F S + +P KA +P E + RG G ++ P PS+AG
Sbjct: 235 GNFKSQLQKVPPEWKALTDMPQMRMELERPGGNEITRGGSTSYGTGSETESPRNPSSAGS 294
Query: 491 W-------GCVXXXXXRCHG-----SWHEGAHLRGKKKAARSKEPGDAST----PTSPRH 360
W G G +W G+ G + S G ST P SPR
Sbjct: 295 WNSGSSGPGSTGNRNPGSSGTGGTATWKPGSSGPGSTGSWNSGSSGTGSTGNQNPGSPRP 354
Query: 359 LPAAGCPRPWKARRGRRAPRSSVAMAAGTVG---------RPREDGKGKANAPDFPDDGA 207
+ G P + RG +S + +G+ G RP G G A P+ PD G
Sbjct: 355 -GSTGTWNPGSSERGSAGHWTSESSVSGSTGQWHSESGSFRPDSPGSGNAR-PNNPDWGT 412
Query: 206 PEKSKGLDSYG 174
E+ G S G
Sbjct: 413 FEEVSGNVSPG 423
>gi|16554579|ref|NP_000084.2| (NM_000093) alpha 1 type V collagen
preproprotein [Homo sapiens]
Length = 1838
Score = 36.2 bits (82), Expect = 0.035
Identities = 52/195 (26%), Positives = 60/195 (30%), Gaps = 13/195 (6%)
Frame = -3
Query: 680 PKGNGGFDSGRDLPGTSKAR----VSLPPPPPSQENAR--------RGQPYRGDKGRRGP 537
PKG+ GFD LPG R S PP PP + R RG P G+ G RG
Sbjct: 626 PKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLP--GEPGPRGL 683
Query: 536 LRQSPRPTAPSAAGKWGCVXXXXXRCHGSWHEGAHLRGKKKAARSKEPGDASTPTSPRHL 357
L P P G G K EPG +P
Sbjct: 684 LGPKGPPGPPGPPGVTGM--------------DGQPGPKGNVGPQGEPGPPGQQGNP--- 726
Query: 356 PAAGCPRPWKARRGRRAPRSSVAMAAGTVGRPREDGK-GKANAPDFPDDGAPEKSKGLDS 180
A G P P G +G P E G GK P P P G +
Sbjct: 727 GAQGLPGP-----------------QGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEG 769
Query: 179 YGAE*GFFLREGGKG 135
E +GG+G
Sbjct: 770 PPGE------KGGQG 778
>gi|7669504|ref|NP_002421.2| (NM_002430) meningioma 1; meningioma
(translocation balanced) [Homo sapiens]
Length = 1319
Score = 35.4 bits (80), Expect = 0.059
Identities = 38/123 (30%), Positives = 47/123 (37%), Gaps = 7/123 (5%)
Frame = -3
Query: 833 HAPSCLPSPLPQDSN*VSFRVGSRHPHFMNTASDCE-----VQLGLGTLALSCFQLPKGN 669
H PS P P P S V FR + P M + C +Q G L Q P
Sbjct: 659 HDPSLAPPPPPGGSG-VLFRGPLQEPMRMPGEATCRAAFTGLQFGGSLGGLGQLQSP--- 714
Query: 668 GGFDSGRDLPGTSKARVSLPPPPPSQENARRGQP--YRGDKGRRGPLRQSPRPTAPSAAG 495
+G LP + R PPPP +A GQP G GR+ P +P +AG
Sbjct: 715 ---GAGVGLPSAASER--RPPPPDFATSALGGQPGFPFGAAGRQSTPHSGPGVNSPPSAG 769
Query: 494 KWG 486
G
Sbjct: 770 GGG 772
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Sep 13, 2003 12:13 AM
Number of letters in database: 10,428,096
Number of sequences in database: 19,804
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,829,542
Number of Sequences: 19804
Number of extensions: 975003
Number of successful extensions: 6198
Number of sequences better than 10.0: 211
Number of HSP's better than 10.0 without gapping: 3768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5952
length of database: 10,428,096
effective HSP length: 101
effective length of database: 8,427,892
effective search space used: 2444088680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20030826C-005923 (20030826C-005923) 20030826C-005923
(1177 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
16,274 sequences; 7,609,334 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|30520093|ref|NP_848808.1| (NM_178693) DNA segment, Chr 2, ERA... 73 2e-13
Alignment gi|6680980|ref|NP_031769.1| (NM_007743) procollagen, type I, alp... 39 0.004
Alignment gi|11967933|ref|NP_071854.1| (NM_022409) zinc finger protein 296... 38 0.007
Alignment gi|33859526|ref|NP_034060.1| (NM_009930) procollagen, type III, ... 37 0.015
Alignment gi|6680972|ref|NP_031764.1| (NM_007738) procollagen, type VII, a... 36 0.032
Alignment gi|12083589|ref|NP_073148.1| (NM_022657) fibroblast growth facto... 35 0.042
Alignment gi|13624305|ref|NP_112440.1| (NM_031163) procollagen, type II, a... 35 0.072
Alignment gi|6754780|ref|NP_034992.1| (NM_010862) myosin XV; shaker 2; myo... 35 0.072
Alignment gi|6754804|ref|NP_035554.1| (NM_011424) nuclear receptor co-repr... 34 0.094
Alignment gi|31088908|ref|NP_852068.1| (NM_181403) RIKEN cDNA 5730409F24 [... 33 0.16
>gi|30520093|ref|NP_848808.1| (NM_178693) DNA segment, Chr 2, ERATO
Doi 97, expressed [Mus musculus]
Length = 266
Score = 72.8 bits (177), Expect = 2e-13
Identities = 35/48 (72%), Positives = 39/48 (80%)
Frame = +2
Query: 431 DVPLRATSHGTGLLYPEHIPTSLLQKALLAAGSAVMALYDPYRHGKAA 574
DVPLRA SHG LLYP+HIPT+ LQK LLAAG+A MALY+PYRH A
Sbjct: 25 DVPLRAGSHGARLLYPDHIPTTPLQKMLLAAGAAGMALYNPYRHDMVA 72
>gi|6680980|ref|NP_031769.1| (NM_007743) procollagen, type I, alpha
2; osteogenesis imperfecta [Mus musculus]
Length = 1373
Score = 38.9 bits (89), Expect = 0.004
Identities = 55/201 (27%), Positives = 67/201 (32%), Gaps = 17/201 (8%)
Frame = -3
Query: 680 PKGNGGFDSGRDLPGTSKARVSLPPPPPSQENARRGQPYRGDKGRRGP-----LRQSPRP 516
P G+ G + PG+ A+ PP PS E +RG P G+ G GP LR SP
Sbjct: 356 PAGSKGESGNKGEPGSVGAQ---GPPGPSGEEGKRGSP--GEAGSAGPAGPPGLRGSPGS 410
Query: 515 TA-PSAAGKWGCVXXXXXRCHGSWHEGAHLRGKKKAARSKEP-GDASTPTSPRHLPAAGC 342
P A G+ G + RG A + P GDA P P + G
Sbjct: 411 RGLPGADGRAGVMGPPGN------------RGSTGPAGIRGPNGDAGRPGEPGLMGPRGL 458
Query: 341 PRPWKARRGRRAPRSSVAMAAGTVGRPREDG----------KGKANAPDFPDDGAPEKSK 192
P G P G VG P DG +G+A FP P
Sbjct: 459 P----GSPGNVGPSGK----EGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPKGPSGDP 510
Query: 191 GLDSYGAE*GFFLREGGKGTD 129
G G G G D
Sbjct: 511 GKPGERGHPGLAGARGAPGPD 531
Score = 29.3 bits (64), Expect = 3.0
Identities = 52/197 (26%), Positives = 62/197 (31%), Gaps = 17/197 (8%)
Frame = -3
Query: 710 GTLALSCFQLPKGNGGFDSGRDLPGTSKARVSLPPPPPSQENARRGQP-YRGDKGRRGPL 534
GT L F+ KG+ G D + PG + P EN GQ RG G RG
Sbjct: 175 GTPGLPGFKGVKGHSGMDGLKGQPGAQGVK---GEPGAPGENGTPGQAGARGLPGERG-- 229
Query: 533 RQSPRPTAPSAAGKWGCVXXXXXRCHGSWHEGAHLRGKKKAARSKEPGDASTPTSPRHLP 354
R AP AG GS + + PG P L
Sbjct: 230 ----RVGAPGPAG-----------ARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELG 274
Query: 353 AAGCPRPWKARRGRRAPRSSVAM--AAGTVGRPREDG-------------KGKANAPDFP 219
G P P G PR V + +G VG P G G A AP P
Sbjct: 275 PVGNPGP----AGPAGPRGEVGLPGLSGPVGPPGNPGTNGLTGAKGATGLPGVAGAPGLP 330
Query: 218 DD-GAPEKSKGLDSYGA 171
G P + + GA
Sbjct: 331 GPRGIPGPAGAAGATGA 347
>gi|11967933|ref|NP_071854.1| (NM_022409) zinc finger protein 296
[Mus musculus]
Length = 333
Score = 38.1 bits (87), Expect = 0.007
Identities = 32/99 (32%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Frame = -3
Query: 461 CHGSWHEGAHLRGKKKAARSKEPGDASTPTSPRHLPAAGCPRP--WKARRGRRAPRSSV- 291
C + + + L KK R PG ST S R + A P P + A P +V
Sbjct: 133 CSYACAQSSKLNRHKKTHRQLAPGSPSTSASSRGVSPAAPPEPAAYAAAPASTLPSQTVE 192
Query: 290 -AMAAGTVG--RPREDGKGKANAPDFPDDGAPEKSKGLD 183
A AA T G P G G P F GAP K + D
Sbjct: 193 KAGAAATAGVQEPGAPGSGAQGGPGFVGWGAPAKVERTD 231
>gi|33859526|ref|NP_034060.1| (NM_009930) procollagen, type III, alpha
1; minisatellite 10w detected by probe MMS10 [Mus
musculus]
Length = 1464
Score = 37.0 bits (84), Expect = 0.015
Identities = 54/184 (29%), Positives = 62/184 (33%), Gaps = 2/184 (1%)
Frame = -3
Query: 674 GNGGFDSGRDLPGTSKARVSLPPPPPSQENARRGQPYRGDKGRRGPLRQSPRPTAPSAAG 495
G GF GR LPG + PP PS G P G G GP S P P AG
Sbjct: 869 GTAGFPGGRGLPGPPGNNGNPGPPGPS------GAP--GKDGPPGPAGNSGSPGNPGIAG 920
Query: 494 KWGCVXXXXXRCHGSWHEGAHLRGKKKAARSKEPGDASTPTSPRHLPAAGC--PRPWKAR 321
G A G+K PG P SP L AG R
Sbjct: 921 PKG---------------DAGQPGEK-----GPPGAQGPPGSPGPLGIAGLTGARGLAGP 960
Query: 320 RGRRAPRSSVAMAAGTVGRPREDGKGKANAPDFPDDGAPEKSKGLDSYGAE*GFFLREGG 141
G PR S G G E GK A+ + + P +GL G R+G
Sbjct: 961 PGMPGPRGS----PGPQGIKGESGKPGASGHN--GERGPPGPQGLPGQPGTAGEPGRDGN 1014
Query: 140 KGTD 129
G+D
Sbjct: 1015 PGSD 1018
Score = 35.4 bits (80), Expect = 0.042
Identities = 47/182 (25%), Positives = 62/182 (33%), Gaps = 19/182 (10%)
Frame = -3
Query: 677 KGNGGFDSGRDLPGTSK---ARVSLPPPPPSQENARRGQP----YRGDKGRRGPLRQSPR 519
KG+ G R PGT+ AR PP P G P G G +G +
Sbjct: 673 KGDSGAPGERGPPGTAGIPGARGGAGPPGPEGGKGPAGPPGPPGASGSPGLQGMPGERGG 732
Query: 518 PTAPSAAGKWGCVXXXXXRCHGSWHEGAHLRGKKKAARSK--------EPGDASTPTSPR 363
P +P G+ G G+ +G + + +PGD SP
Sbjct: 733 PGSPGPKGEKG-------EPGGAGADGVPGKDGPRGPAGPIGPPGPAGQPGDKGEGGSPG 785
Query: 362 HLPAAGCPRPWKARRGRRAPRSSVAMAAGTVGRPREDG----KGKANAPDFPDDGAPEKS 195
LP PR RG P AG G P ++G KG+ AP +G P
Sbjct: 786 -LPGIAGPRGGPGERGEHGPPGP----AGFPGAPGQNGEPGAKGERGAPGEKGEGGPPGP 840
Query: 194 KG 189
G
Sbjct: 841 AG 842
>gi|6680972|ref|NP_031764.1| (NM_007738) procollagen, type VII, alpha
1 [Mus musculus]
Length = 2944
Score = 35.8 bits (81), Expect = 0.032
Identities = 24/67 (35%), Positives = 30/67 (43%), Gaps = 2/67 (2%)
Frame = -3
Query: 680 PKGNGGFDSGRDLPGTSKARVSLPPPPPSQENARRGQPYRGDKGRRGPLRQS--PRPTAP 507
P G GGF R G+S PP PP + + +G KG RGP +S P AP
Sbjct: 2696 PPGVGGFPGPRGNDGSSG-----PPGPPGGVGPKGPEGLQGQKGERGPPGESVVGAPGAP 2750
Query: 506 SAAGKWG 486
G+ G
Sbjct: 2751 GTPGERG 2757
Score = 28.1 bits (61), Expect = 6.7
Identities = 50/190 (26%), Positives = 58/190 (30%), Gaps = 26/190 (13%)
Frame = -3
Query: 677 KGNGGFDSGRDLPGTSKARVSLPPPPPSQENARRGQPYRGDKGRRGPLRQSPRPTAPSAA 498
KG GF PG S +P P + + R P RG++G RGP P P
Sbjct: 1296 KGERGFPGPEGPPG-SPGLPGVPGSPGIKGSTGRPGP-RGEQGERGPQGPKGEPGEPGQI 1353
Query: 497 GKWGCVXXXXXRCHGSWHEGAHLRGKK-KAARSKEPGDAST-----PTSPRHLPAAGCPR 336
G G GKK S PG P P LP +
Sbjct: 1354 TGGG---------------GPGFPGKKGDPGPSGPPGSRGPVGDPGPRGPPGLPGISV-K 1397
Query: 335 PWKARRGRRAPRSSVAMAA-----------------GTVGRPREDG-KG--KANAPDFPD 216
K RG R P A+ G GRP E G KG + P P
Sbjct: 1398 GDKGDRGERGPPGPGIGASEQGDPGLPGLPGSPGPQGPAGRPGEKGEKGDCEDGGPGLPG 1457
Query: 215 DGAPEKSKGL 186
P GL
Sbjct: 1458 QPGPPGEPGL 1467
>gi|12083589|ref|NP_073148.1| (NM_022657) fibroblast growth factor
23 [Mus musculus]
Length = 251
Score = 35.4 bits (80), Expect = 0.042
Identities = 21/49 (42%), Positives = 26/49 (52%), Gaps = 1/49 (2%)
Frame = -2
Query: 369 PPPLACSR-LPAALEGAEGAQGPAQQRRHGSGYSRTSAGGWEGQGQCPR 226
P P++CSR LP+A EG A P R G G +R AGG + PR
Sbjct: 201 PVPVSCSRELPSAEEGGPAASDPLGVLRRGRGDARGGAGGADRCRPFPR 249
>gi|13624305|ref|NP_112440.1| (NM_031163) procollagen, type II, alpha
1; disproportionate micromelia [Mus musculus]
Length = 1442
Score = 34.7 bits (78), Expect = 0.072
Identities = 52/177 (29%), Positives = 64/177 (35%), Gaps = 13/177 (7%)
Frame = -3
Query: 680 PKGNGGFDSGRDL------PGTSKARVSL----PPPPPSQENARRGQPYRGDKGRRGPLR 531
P+G G D GR L PG + A PP P A RG P G+ G GP
Sbjct: 730 PEGAPGKDGGRGLTGPIGPPGPAGANGEKGEAGPPGPSGSTGA-RGAP--GEPGETGPPG 786
Query: 530 QSPRPTAPSAAGKWGCVXXXXXRCHGSWHEGAHLRGKKKAARSKEPGDASTPTSPRHLPA 351
+ P A G+ G G E A +G A + P A P P
Sbjct: 787 PAGFAGPPGADGQPG--------AKGDQGE-AGQKGDAGAPGPQGPSGAPGPQGP----- 832
Query: 350 AGCPRPWKARRGRRAPRSSVAM--AAGTVGRPREDGK-GKANAPDFPDDGAPEKSKG 189
G P K RG + P + AAG VG P +G G A P P+ +G
Sbjct: 833 TGVTGP-KGARGAQGPPGATGFPGAAGRVGPPGANGNPGPAGPPGPAGKDGPKGVRG 888
Score = 30.8 bits (68), Expect = 1.0
Identities = 40/155 (25%), Positives = 47/155 (29%), Gaps = 2/155 (1%)
Frame = -3
Query: 677 KGNGGFDSGRDLPGTSKARVSLPPPPPSQENARRGQPYRGDKGRRGPLRQSPRPTAPSAA 498
KG G R LPG + PP PS RG++G GP P P
Sbjct: 575 KGLAGAPGLRGLPGKDGETGAAGPPGPSGPAGE-----RGEQGAPGPSGFQGLPGPPGPP 629
Query: 497 GKWGCVXXXXXRCHGSWHEGAHLRGKKKAARSKEPGDASTP--TSPRHLPAAGCPRPWKA 324
G+ G K PG+A P PR R
Sbjct: 630 GEGG-----------------------KQGDQGIPGEAGAPGLVGPRGERGFPGERGSPG 666
Query: 323 RRGRRAPRSSVAMAAGTVGRPREDGKGKANAPDFP 219
+G + PR G G P DG A PD P
Sbjct: 667 AQGLQGPR-------GLPGTPGTDGPKGAAGPDGP 694
>gi|6754780|ref|NP_034992.1| (NM_010862) myosin XV; shaker 2; myosin
XVA [Mus musculus]
Length = 3511
Score = 34.7 bits (78), Expect = 0.072
Identities = 31/106 (29%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Frame = -3
Query: 611 PPPPPSQENARRGQPYRGDKGRRGPLRQ----SPRPTAPSAAGKWGCVXXXXXRCHGSWH 444
PPPP ++ R R GR GP R SPRP +P K HG H
Sbjct: 802 PPPPRRPQSLREAFSLRRASGRLGPPRSPVLGSPRPPSPPPLLK-----------HGPRH 850
Query: 443 EGAHLRGKKKAA---RSKEPGDASTPTSPRHLPAAGCPRPWKARRG 315
+L + S+ P A P R P PW A G
Sbjct: 851 RSLNLPSRLPRTWRRLSEPPTRAVKPWVHRAYPPPPSAGPWGASTG 896
>gi|6754804|ref|NP_035554.1| (NM_011424) nuclear receptor co-repressor
2; silencing mediator of retinoid acid and thyroid
hormone receptor [Mus musculus]
Length = 2462
Score = 34.3 bits (77), Expect = 0.094
Identities = 43/139 (30%), Positives = 55/139 (38%), Gaps = 26/139 (18%)
Frame = +1
Query: 337 RGQPAAGKWRGLVGVLASPGSFDR--------AAFFLPRRCAPSCHEPWHRPP-LPRTHP 489
RG +RG + + P S R AA++LPR APS P PP L R +P
Sbjct: 1579 RGVTGVDLYRGHIPLAFDPTSIPRGIPLEAAAAAYYLPRHLAPSPTYPHLYPPYLIRGYP 1638
Query: 490 HFPAAE-----------------GAVGRGLCRNGPLRPLSPR*GCPRLAFSWEGGGGGRL 618
A E A R LR LSPR LA ++ G G +
Sbjct: 1639 DTAALENRQTIINDYITSQQMHHNAASAMAQRADMLRGLSPRES--SLALNYSAGPRGII 1696
Query: 619 TLALEVPGRSLPLSKPPFP 675
L+ +VP LP+ PP P
Sbjct: 1697 DLS-QVP--HLPVLVPPTP 1712
>gi|31088908|ref|NP_852068.1| (NM_181403) RIKEN cDNA 5730409F24 [Mus
musculus]
Length = 352
Score = 33.5 bits (75), Expect = 0.16
Identities = 40/148 (27%), Positives = 55/148 (37%), Gaps = 4/148 (2%)
Frame = +1
Query: 121 PFLSVPFPPSRKKKPYSAP*ESSPFDFSGAPSSGKSGALALPFPSSRGRPTVPAAMATLL 300
P L+ PP R P P + P P LP+ S G P P A
Sbjct: 164 PELAGDVPPKRPPPPRPVPQATPPETEEQPPQPSVVTPYPLPYSPSPGLPVGPTA----- 218
Query: 301 RGALRPLRAFQGRGQPAAGKWRGLVGVLASPGSFDRAAF---FLPRRCAPSCHEPWHRPP 471
+GAL+P F QP++ + G +G SP RA + P+R P + P
Sbjct: 219 QGALQP-APFPVVAQPSS--YGGPLGPYPSPHPGPRAMVGYSWSPQRSGPP-QPGYPTAP 274
Query: 472 LPRTHPHFPAAEGAV-GRGLCRNGPLRP 552
+ P +P G G G + P P
Sbjct: 275 TSTSGPGYPLVGGRTPGPGYPQQSPYLP 302
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Sep 13, 2003 12:13 AM
Number of letters in database: 7,609,334
Number of sequences in database: 16,274
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,023,837
Number of Sequences: 16274
Number of extensions: 670094
Number of successful extensions: 3951
Number of sequences better than 10.0: 132
Number of HSP's better than 10.0 without gapping: 2539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3803
length of database: 7,609,334
effective HSP length: 99
effective length of database: 5,998,208
effective search space used: 1751476736
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)