Search to RefSeq (Human) database
Query= 20030826S-004929 (20030826S-004929) 20030826S-004929
(1190 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,804 sequences; 10,428,096 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4507651|ref|NP_003281.1| (NM_003290) tropomyosin 4 [Homo sapi... 96 5e-20
Alignment gi|24119203|ref|NP_705935.1| (NM_153649) tropomyosin 3 [Homo sap... 84 1e-16
Alignment gi|4507649|ref|NP_003280.1| (NM_003289) tropomyosin 2 (beta) [Ho... 42 6e-04
Alignment gi|27597085|ref|NP_000357.3| (NM_000366) tropomyosin 1 (alpha) [... 42 8e-04
Alignment gi|22748619|ref|NP_689476.1| (NM_152263) tropomyosin 3 [Homo sap... 40 0.002
Alignment gi|21361602|ref|NP_061849.2| (NM_018976) solute carrier family 3... 30 2.5
Alignment gi|13435161|ref|NP_079489.1| (NM_025213) spectrin, beta, non-ery... 30 3.3
Alignment gi|17149834|ref|NP_002950.3| (NM_002959) sortilin 1 preproprotei... 29 4.3
Alignment gi|28875784|ref|NP_079018.1| (NM_024742) hypothetical protein FL... 29 5.6
Alignment gi|25777650|ref|NP_740752.1| (NM_170782) small conductance calci... 28 7.3
>gi|4507651|ref|NP_003281.1| (NM_003290) tropomyosin 4 [Homo
sapiens]
Length = 248
Score = 95.5 bits (236), Expect = 5e-20
Identities = 53/83 (63%), Positives = 57/83 (67%)
Frame = +3
Query: 117 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 296
MAGLNSLEAVKRKIQ LQQQADEAEDRA GL RELDG VA L RRIQL +
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 297 EDLDLAHERLATRLPIFKDERPA 365
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>gi|24119203|ref|NP_705935.1| (NM_153649) tropomyosin 3 [Homo
sapiens]
Length = 248
Score = 84.3 bits (207), Expect = 1e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +3
Query: 117 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 296
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 297 EDLDLAHERLATRLPIFKDERPA 365
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>gi|4507649|ref|NP_003280.1| (NM_003289) tropomyosin 2 (beta) [Homo
sapiens]
Length = 284
Score = 42.0 bits (97), Expect = 6e-04
Identities = 22/76 (28%), Positives = 39/76 (50%)
Frame = +3
Query: 138 EAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLDLAH 317
+A+++K++ + + ++ + +L+ VA L RRIQL +E+LD A
Sbjct: 44 QALQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQ 103
Query: 318 ERLATRLPIFKDERPA 365
ERLAT L ++ A
Sbjct: 104 ERLATALQKLEEAEKA 119
>gi|27597085|ref|NP_000357.3| (NM_000366) tropomyosin 1 (alpha)
[Homo sapiens]
Length = 284
Score = 41.6 bits (96), Expect = 8e-04
Identities = 23/79 (29%), Positives = 40/79 (50%)
Frame = +3
Query: 129 NSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLD 308
+ L ++++K++ + + D+ + +L+ VA L RRIQL +E+LD
Sbjct: 41 DELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELD 100
Query: 309 LAHERLATRLPIFKDERPA 365
A ERLAT L ++ A
Sbjct: 101 RAQERLATALQKLEEAEKA 119
>gi|22748619|ref|NP_689476.1| (NM_152263) tropomyosin 3 [Homo
sapiens]
Length = 243
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/77 (28%), Positives = 40/77 (51%)
Frame = +3
Query: 135 LEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLDLA 314
+EA+K+K+Q+L+ + A DRA E +A + ++++ +++LD A
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDRA 61
Query: 315 HERLATRLPIFKDERPA 365
ERLAT L ++ A
Sbjct: 62 QERLATALQKLEEAEKA 78
>gi|21361602|ref|NP_061849.2| (NM_018976) solute carrier family 38,
member 2; amino acid transporter 2 [Homo sapiens]
Length = 506
Score = 30.0 bits (66), Expect = 2.5
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = -1
Query: 455 SGKYGEGHNSKQKGVAIFIIAVSAIWIY-MFSGSLILKNRQAGGQSFMSQIQVLISELDA 279
SG G + G+A+FII ++ + I+ ++S L+LK GG Q+
Sbjct: 87 SGILGLSYAMANTGIALFIILLTFVSIFSLYSVHLLLKTANEGGSLLYEQLG-------- 138
Query: 278 ASERCYFPFGFLTPLALAVQLPVQAVRAI 192
Y FG + LA + + +Q + A+
Sbjct: 139 -----YKAFGLVGKLAASGSITMQNIGAM 162
>gi|13435161|ref|NP_079489.1| (NM_025213) spectrin, beta,
non-erythrocytic 4; spectrin beta 4 [Homo sapiens]
Length = 2559
Score = 29.6 bits (65), Expect = 3.3
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = -2
Query: 127 RPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEP 17
RP RR R G GG S R S + APAP P
Sbjct: 2372 RPKPRRRPRPREGGEGGGSRRSRSAPAQGGSAPAPPP 2408
>gi|17149834|ref|NP_002950.3| (NM_002959) sortilin 1 preproprotein;
neurotensin receptor 3 [Homo sapiens]
Length = 831
Score = 29.3 bits (64), Expect = 4.3
Identities = 16/54 (29%), Positives = 26/54 (47%)
Frame = -1
Query: 440 EGHNSKQKGVAIFIIAVSAIWIYMFSGSLILKNRQAGGQSFMSQIQVLISELDA 279
E NSK V I + V + + + +G LI+K GG+ + + VL +A
Sbjct: 748 EKQNSKSNSVPIILAIVGLMLVTVVAGVLIVKKYVCGGRFLVHRYSVLQQHAEA 801
>gi|28875784|ref|NP_079018.1| (NM_024742) hypothetical protein
FLJ13063 [Homo sapiens]
Length = 725
Score = 28.9 bits (63), Expect = 5.6
Identities = 23/55 (41%), Positives = 25/55 (44%), Gaps = 5/55 (9%)
Frame = -2
Query: 157 ILRFTASRELRPAMARRRTQRAAGS-----GGRSARLCSCKSCSSRAPAPEPFSS 8
I RF A LRP +A R AAGS G SA + SS APA P S
Sbjct: 58 IERFRARGGLRPLLALLRRAAAAGSAPSQAGPGSAPSSAASGASSPAPASGPAPS 112
>gi|25777650|ref|NP_740752.1| (NM_170782) small conductance
calcium-activated potassium channel protein 3 isoform b
[Homo sapiens]
Length = 426
Score = 28.5 bits (62), Expect = 7.3
Identities = 19/53 (35%), Positives = 26/53 (48%), Gaps = 1/53 (1%)
Frame = +3
Query: 558 YTPKHTKLPLDLTFSIP-FFNVSTPFITLLLHATLMTD*LHLR*ISLNGILFN 713
YTP + +D+ SIP F + +LLH+ L TD +LN I FN
Sbjct: 89 YTPSRAEADVDIILSIPMFLRLYLIARVMLLHSKLFTDASSRSIGALNKINFN 141
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Sep 13, 2003 12:13 AM
Number of letters in database: 10,428,096
Number of sequences in database: 19,804
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,557,770
Number of Sequences: 19804
Number of extensions: 341427
Number of successful extensions: 1039
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 10,428,096
effective HSP length: 101
effective length of database: 8,427,892
effective search space used: 2486228140
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20030826S-004929 (20030826S-004929) 20030826S-004929
(1190 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
16,274 sequences; 7,609,334 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|11875203|ref|NP_033442.2| (NM_009416) tropomyosin 2, beta [Mu... 42 4e-04
Alignment gi|31560030|ref|NP_077745.2| (NM_024427) tropomyosin 1, alpha; a... 42 6e-04
Alignment gi|13928666|ref|NP_071709.1| (NM_022314) tropomyosin 3, gamma; s... 42 6e-04
Alignment gi|31982705|ref|NP_064368.2| (NM_019984) transglutaminase 1, K p... 33 0.21
Alignment gi|6679733|ref|NP_032003.1| (NM_007977) coagulation factor VIII;... 30 2.4
Alignment gi|30794220|ref|NP_115999.1| (NM_032610) spectrin beta 4; beta-s... 30 2.4
Alignment gi|15150793|ref|NP_085032.1| (NM_030555) pre-B-cell leukemia tra... 30 2.4
Alignment gi|31543735|ref|NP_780330.2| (NM_175121) solute carrier family 3... 29 4.0
Alignment gi|17978284|ref|NP_536714.1| (NM_080466) small conductance calci... 28 5.2
Alignment gi|9910558|ref|NP_064356.1| (NM_019972) sortilin 1; neurotensin ... 28 6.9
>gi|11875203|ref|NP_033442.2| (NM_009416) tropomyosin 2, beta [Mus
musculus]
Length = 284
Score = 42.4 bits (98), Expect = 4e-04
Identities = 22/76 (28%), Positives = 39/76 (50%)
Frame = +3
Query: 138 EAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLDLAH 317
+A+++K++ + + ++ + +L+ VA L RRIQL +E+LD A
Sbjct: 44 QALQKKLKGTEDEVEKYSESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQ 103
Query: 318 ERLATRLPIFKDERPA 365
ERLAT L ++ A
Sbjct: 104 ERLATALQKLEEAEKA 119
>gi|31560030|ref|NP_077745.2| (NM_024427) tropomyosin 1, alpha;
alpha tropomyosin [Mus musculus]
Length = 284
Score = 41.6 bits (96), Expect = 6e-04
Identities = 23/79 (29%), Positives = 40/79 (50%)
Frame = +3
Query: 129 NSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLD 308
+ L ++++K++ + + D+ + +L+ VA L RRIQL +E+LD
Sbjct: 41 DELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELD 100
Query: 309 LAHERLATRLPIFKDERPA 365
A ERLAT L ++ A
Sbjct: 101 RAQERLATALQKLEEAEKA 119
>gi|13928666|ref|NP_071709.1| (NM_022314) tropomyosin 3, gamma;
skalphaTM.2; tropomyosin 5 [Mus musculus]
Length = 284
Score = 41.6 bits (96), Expect = 6e-04
Identities = 23/79 (29%), Positives = 39/79 (49%)
Frame = +3
Query: 129 NSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLADEDLD 308
+ L +++K++ + + D+ + +L+ VA L RRIQL +E+LD
Sbjct: 41 DELATMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELD 100
Query: 309 LAHERLATRLPIFKDERPA 365
A ERLAT L ++ A
Sbjct: 101 RAQERLATALQKLEEAEKA 119
>gi|31982705|ref|NP_064368.2| (NM_019984) transglutaminase 1, K
polypeptide;
protein-glutamine-gamma-glutamyltransferase;
transglutaminase type 1; TG K; TGase 1; K polypeptide
[Mus musculus]
Length = 815
Score = 33.1 bits (74), Expect = 0.21
Identities = 22/58 (37%), Positives = 26/58 (43%), Gaps = 5/58 (8%)
Frame = -2
Query: 160 WILRFTASRELRPAMARRRTQRAAGSGGRS--ARLCSCKSCSSRAP---APEPFSSKT 2
W T S E P R R+ GGRS AR C C SC +R PEP S++
Sbjct: 16 WQPPTTPSPEPEPEPEPDRRSRSRRGGGRSFWARCCGCCSCGNRGDDDWGPEPSGSRS 73
>gi|6679733|ref|NP_032003.1| (NM_007977) coagulation factor VIII;
Factor VIII [Mus musculus]
Length = 2319
Score = 29.6 bits (65), Expect = 2.4
Identities = 19/48 (39%), Positives = 25/48 (51%)
Frame = -1
Query: 482 IRKVDWYSKSGKYGEGHNSKQKGVAIFIIAVSAIWIYMFSGSLILKNR 339
I D YS+ K G + +QK FI AV +W Y S S +L+NR
Sbjct: 1663 IEDFDIYSEDIKQGP-RSFQQKTRHYFIAAVERLWDYGMSTSHVLRNR 1709
>gi|30794220|ref|NP_115999.1| (NM_032610) spectrin beta 4;
beta-spectrin 4; quivering; lumbosacral neuroaxonal
dystrophy; neuroaxonal dystrophy [Mus musculus]
Length = 2561
Score = 29.6 bits (65), Expect = 2.4
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = -2
Query: 127 RPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEP 17
RP RR R G GG S R S + APAP P
Sbjct: 2374 RPKPRRRPRPREGGEGGGSRRSRSAPAQGGSAPAPPP 2410
>gi|15150793|ref|NP_085032.1| (NM_030555) pre-B-cell leukemia
transcription factor 4 [Mus musculus]
Length = 74
Score = 29.6 bits (65), Expect = 2.4
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 78 PPLPAARCVRLRAMAGLNSLEAVKRKIQVLQQQADEAEDRAHGLH 212
PP PA R + A G ++ + +++ + + Q DEA+ R H L+
Sbjct: 9 PPQPAPRRLPTTAPLGHDTSDVLQQIMAITDQSLDEAQARKHALN 53
>gi|31543735|ref|NP_780330.2| (NM_175121) solute carrier family 38,
member 2 [Mus musculus]
Length = 504
Score = 28.9 bits (63), Expect = 4.0
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 455 SGKYGEGHNSKQKGVAIFIIAVSAIWIY-MFSGSLILKNRQAGGQSFMSQI 306
SG G + G+A+FII ++ + I+ ++S L+LK GG Q+
Sbjct: 87 SGILGLSYAMANTGIALFIILLTFVSIFSLYSVHLLLKTANEGGSLLYEQL 137
>gi|17978284|ref|NP_536714.1| (NM_080466) small conductance
calcium-activated potassium channel protein 3; small
conductance calcium-activated potassium channel 3 [Mus
musculus]
Length = 731
Score = 28.5 bits (62), Expect = 5.2
Identities = 19/53 (35%), Positives = 26/53 (48%), Gaps = 1/53 (1%)
Frame = +3
Query: 558 YTPKHTKLPLDLTFSIP-FFNVSTPFITLLLHATLMTD*LHLR*ISLNGILFN 713
YTP + +D+ SIP F + +LLH+ L TD +LN I FN
Sbjct: 394 YTPSRAEADVDIILSIPMFLRLYLIARVMLLHSKLFTDASSRSIGALNKINFN 446
>gi|9910558|ref|NP_064356.1| (NM_019972) sortilin 1; neurotensin
receptor 3 [Mus musculus]
Length = 825
Score = 28.1 bits (61), Expect = 6.9
Identities = 15/51 (29%), Positives = 25/51 (48%)
Frame = -1
Query: 431 NSKQKGVAIFIIAVSAIWIYMFSGSLILKNRQAGGQSFMSQIQVLISELDA 279
NSK V I + V + + + +G LI+K GG+ + + VL +A
Sbjct: 749 NSKSNSVPIILAIVGLMLVTVVAGVLIVKKYVCGGRFLVHRYSVLQQHAEA 799
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Sep 13, 2003 12:13 AM
Number of letters in database: 7,609,334
Number of sequences in database: 16,274
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,924,392
Number of Sequences: 16274
Number of extensions: 253107
Number of successful extensions: 739
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 7,609,334
effective HSP length: 99
effective length of database: 5,998,208
effective search space used: 1781467776
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)