Search to RefSeq (Human) database
Query= 20030826S-018738 (20030826S-018738) 20030826S-018738
(736 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,804 sequences; 10,428,096 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|14192943|ref|NP_115822.1| (NM_032446) MEGF10 protein [Homo sa... 123 8e-29
Alignment gi|14192941|ref|NP_115821.1| (NM_032445) MEGF11 protein [Homo sa... 93 2e-19
Alignment gi|4557869|ref|NP_000450.1| (NM_000459) TEK tyrosine kinase, end... 54 8e-08
Alignment gi|4885631|ref|NP_005415.1| (NM_005424) tyrosine kinase with imm... 54 1e-07
Alignment gi|33598935|ref|NP_663327.1| (NM_145352) scavenger receptor clas... 52 2e-07
Alignment gi|33598933|ref|NP_663326.1| (NM_145351) scavenger receptor clas... 52 2e-07
Alignment gi|33598931|ref|NP_663325.1| (NM_145350) scavenger receptor clas... 52 2e-07
Alignment gi|21264602|ref|NP_005551.3| (NM_005560) laminin alpha 5; lamini... 52 2e-07
Alignment gi|33598929|ref|NP_003684.2| (NM_003693) scavenger receptor clas... 52 2e-07
Alignment gi|33598927|ref|NP_663324.1| (NM_145349) scavenger receptor clas... 52 2e-07
>gi|14192943|ref|NP_115822.1| (NM_032446) MEGF10 protein [Homo
sapiens]
Length = 1140
Score = 123 bits (309), Expect = 8e-29
Identities = 53/64 (82%), Positives = 54/64 (83%), Gaps = 4/64 (6%)
Frame = +1
Query: 295 CHSASPLCLV----SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGT 462
CH + C SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGT
Sbjct: 550 CHPTTGHCRCLPGWSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGT 609
Query: 463 TCQR 474
TCQR
Sbjct: 610 TCQR 613
Score = 66.6 bits (161), Expect = 1e-11
Identities = 25/48 (52%), Positives = 30/48 (62%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQ 471
G +C S C WGP+C+ C CKNGA C+P G C CA GFRG C+
Sbjct: 132 GTNCSSACDGDHWGPHCTSRCQCKNGALCNPITGACHCAAGFRGWRCE 179
Score = 62.8 bits (151), Expect = 2e-10
Identities = 24/48 (50%), Positives = 29/48 (60%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQ 471
GV C C G WG C+L C C NG +C+ DG C CAPG+RG C+
Sbjct: 479 GVDCSIRCPSGTWGFGCNLTCQCLNGGACNTLDGTCTCAPGWRGEKCE 526
Score = 60.8 bits (146), Expect = 7e-10
Identities = 26/63 (41%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Frame = +1
Query: 295 CHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGT 462
CH + C G C C EGR+G NCS C C NG +C G C C+PG+ G
Sbjct: 246 CHHVTGECSCPSGWMGTVCGQPCPEGRFGKNCSQECQCHNGGTCDAATGQCHCSPGYTGE 305
Query: 463 TCQ 471
CQ
Sbjct: 306 RCQ 308
Score = 60.8 bits (146), Expect = 7e-10
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +1
Query: 292 NCHSASPLCLV----SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRG 459
+CH S C SG++C+ C+ G +G C C C+NGA C G C CAPGF+G
Sbjct: 377 SCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQICSCQNGADCDSVTGKCTCAPGFKG 436
Query: 460 TTC 468
C
Sbjct: 437 IDC 439
Score = 59.7 bits (143), Expect = 2e-09
Identities = 27/58 (46%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTC-QRSKCLFRGQ 498
G C C WGPNC C C NGA CS DG C+C PG+ G C QR F G+
Sbjct: 696 GSDCSQPCPPAHWGPNCIHTCNCHNGAFCSAYDGECKCTPGWTGLYCTQRCPLGFYGK 753
Score = 59.3 bits (142), Expect = 2e-09
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Frame = +1
Query: 295 CHSASPLCLV----SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGT 462
CH + LC +G C+ VC GR+G NC+ C C N +C+P D C+C PG+ G+
Sbjct: 638 CHHITGLCDCLPGFTGALCNEVCPSGRFGKNCAGICTCTNNGTCNPIDRSCQCYPGWIGS 697
Query: 463 TCQR 474
C +
Sbjct: 698 DCSQ 701
Score = 58.2 bits (139), Expect = 4e-09
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +1
Query: 292 NCHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRG 459
+C S + C + G+ C + C G +G NCS C CKN A CSP DG C C G+ G
Sbjct: 420 DCDSVTGKCTCAPGFKGIDCSTPCPLGTYGINCSSRCGCKNDAVCSPVDGSCTCKAGWHG 479
Query: 460 TTC 468
C
Sbjct: 480 VDC 482
Score = 54.7 bits (130), Expect = 5e-08
Identities = 23/64 (35%), Positives = 32/64 (49%)
Frame = +1
Query: 280 PTLTNCHSASPLCLVSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRG 459
P CH A+ G C+ C +G +G +C C C+NGA+C G C C PG+ G
Sbjct: 162 PITGACHCAAGF---RGWRCEDRCEQGTYGNDCHQRCQCQNGATCDHVTGECRCPPGYTG 218
Query: 460 TTCQ 471
C+
Sbjct: 219 AFCE 222
Score = 53.1 bits (126), Expect = 1e-07
Identities = 22/53 (41%), Positives = 31/53 (57%)
Frame = +1
Query: 325 SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQRSKC 483
+G++C C G +G +C+L C C+NGA C G C C GF G C++ KC
Sbjct: 738 TGLYCTQRCPLGFYGKDCALICQCQNGADCDHISGQCTCRTGFMGRHCEQ-KC 789
Score = 51.6 bits (122), Expect = 4e-07
Identities = 19/48 (39%), Positives = 25/48 (51%)
Frame = +1
Query: 325 SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTC 468
+G C+ +C G+ GP C C C+NG C G C C G+ GT C
Sbjct: 217 TGAFCEDLCPPGKHGPQCEQRCPCQNGGVCHHVTGECSCPSGWMGTVC 264
Score = 51.2 bits (121), Expect = 5e-07
Identities = 19/56 (33%), Positives = 29/56 (50%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQRSKCLFRG 495
G HC+ C G +G C C C N ++C G C C+PG++G C ++ + G
Sbjct: 782 GRHCEQKCPSGTYGYGCRQICDCLNNSTCDHITGTCYCSPGWKGARCDQAGVIIVG 837
Score = 48.5 bits (114), Expect = 3e-06
Identities = 18/47 (38%), Positives = 24/47 (50%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTC 468
G C+ C +G +G NC+ C C + C P G C C PG+ G C
Sbjct: 522 GEKCELPCQDGTYGLNCAERCDCSHADGCHPTTGHCRCLPGWSGVHC 568
Score = 48.1 bits (113), Expect = 5e-06
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = +1
Query: 295 CHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGT 462
C +A+ C S G C C G +G C+ C C NG C G C C GF G
Sbjct: 289 CDAATGQCHCSPGYTGERCQDECPVGTYGVLCAETCQCVNGGKCYHVSGACLCEAGFAGE 348
Query: 463 TCQRSKC 483
C+ C
Sbjct: 349 RCEARLC 355
Score = 47.8 bits (112), Expect = 6e-06
Identities = 24/68 (35%), Positives = 34/68 (49%), Gaps = 7/68 (10%)
Frame = +1
Query: 295 CHSASPLCLV----SGVHCDS-VCAEGRWGPNCS--LPCYCKNGASCSPDDGICECAPGF 453
C+ S CL +G C++ +C EG +G C PC+ +N SC P G C C PG+
Sbjct: 332 CYHVSGACLCEAGFAGERCEARLCPEGLYGIKCDKRCPCHLENTHSCHPMSGECACKPGW 391
Query: 454 RGTTCQRS 477
G C +
Sbjct: 392 SGLYCNET 399
Score = 42.0 bits (97), Expect = 3e-04
Identities = 18/49 (36%), Positives = 25/49 (50%), Gaps = 2/49 (4%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPC-YCKNGAS-CSPDDGICECAPGFRGTTC 468
G C +C+ G +G CS C C + + C G+C+C PGF G C
Sbjct: 608 GTTCQRICSPGFYGHRCSQTCPQCVHSSGPCHHITGLCDCLPGFTGALC 656
>gi|14192941|ref|NP_115821.1| (NM_032445) MEGF11 protein [Homo
sapiens]
Length = 969
Score = 92.8 bits (229), Expect = 2e-19
Identities = 35/50 (70%), Positives = 40/50 (80%)
Frame = +1
Query: 325 SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
+G+ CDS C GRWGPNCS+ C C+NG SCSP+DG CECAPGFRG CQR
Sbjct: 483 TGIRCDSTCPPGRWGPNCSVSCSCENGGSCSPEDGSCECAPGFRGPLCQR 532
Score = 65.9 bits (159), Expect = 2e-11
Identities = 25/48 (52%), Positives = 30/48 (62%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQ 471
G+ C C G WG NC+ C C NGA+CSP DG C C PG+ G TC+
Sbjct: 398 GLDCTLPCPSGTWGLNCNESCTCANGAACSPIDGSCSCTPGWLGDTCE 445
Score = 65.5 bits (158), Expect = 3e-11
Identities = 28/63 (44%), Positives = 33/63 (51%), Gaps = 4/63 (6%)
Frame = +1
Query: 292 NCHSASPLCLV----SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRG 459
+CH + C SG HC+ C G +G C LPC C+NGA C G C CAPGF G
Sbjct: 296 SCHPVTGACTCQPGWSGHHCNESCPVGYYGDGCQLPCTCQNGADCHSITGGCTCAPGFMG 355
Query: 460 TTC 468
C
Sbjct: 356 EVC 358
Score = 64.3 bits (155), Expect = 6e-11
Identities = 28/58 (48%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTC-QRSKCLFRGQ 498
G C C G WGP C C C NGASCS +DG C C PG+ G C QR F G+
Sbjct: 615 GKDCSQACPPGFWGPACFHACSCHNGASCSAEDGACHCTPGWTGLFCTQRCPAAFFGK 672
Score = 63.9 bits (154), Expect = 8e-11
Identities = 26/63 (41%), Positives = 36/63 (56%), Gaps = 4/63 (6%)
Frame = +1
Query: 295 CHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGT 462
C+ + C+ + G C+ +CA G G C LPC C++GASC P G C CAPG+ G
Sbjct: 79 CNPITGACVCAAGFRGWRCEELCAPGTHGKGCQLPCQCRHGASCDPRAGECLCAPGYTGV 138
Query: 463 TCQ 471
C+
Sbjct: 139 YCE 141
Score = 63.2 bits (152), Expect = 1e-10
Identities = 25/48 (52%), Positives = 29/48 (60%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQ 471
G C S C WGP+CS C C+NGA C+P G C CA GFRG C+
Sbjct: 51 GPDCSSGCDSDHWGPHCSNRCQCQNGALCNPITGACVCAAGFRGWRCE 98
Score = 63.2 bits (152), Expect = 1e-10
Identities = 36/94 (38%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Frame = +1
Query: 208 PCPLLPGV-SQF*DHDLVSHLAFQMPTLTN-CHSASPLCLVSGVHCDSVCAEGRWGPNCS 381
PCP PG Q D H Q +T CH + G C C G +G CS
Sbjct: 186 PCP--PGTFGQNCSQDCPCHHGGQCDHVTGQCHCTAGYM---GDRCQEECPFGSFGFQCS 240
Query: 382 LPCYCKNGASCSPDDGICECAPGFRGTTCQRSKC 483
C C NG CSP G CEC PG++G CQ C
Sbjct: 241 QRCDCHNGGQCSPTTGACECEPGYKGPRCQERLC 274
Score = 62.8 bits (151), Expect = 2e-10
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +1
Query: 292 NCHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRG 459
+CHS + C + G C CA G +GPNCS C C NG +CSP DG C C G++G
Sbjct: 339 DCHSITGGCTCAPGFMGEVCAVSCAAGTYGPNCSSICSCNNGGTCSPVDGSCTCKEGWQG 398
Query: 460 TTC 468
C
Sbjct: 399 LDC 401
Score = 62.4 bits (150), Expect = 2e-10
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Frame = +1
Query: 295 CHSASPLCLV----SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGT 462
CH S +C SG C+ VCA G +G +C+ C C N +CSP DG C+C PG+ G
Sbjct: 557 CHHISGICECLPGFSGALCNQVCAGGYFGQDCAQLCSCANNGTCSPIDGSCQCFPGWIGK 616
Query: 463 TCQRS 477
C ++
Sbjct: 617 DCSQA 621
Score = 54.7 bits (130), Expect = 5e-08
Identities = 20/48 (41%), Positives = 28/48 (57%)
Frame = +1
Query: 325 SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTC 468
+GV+C+ +C G G +C L C C+NG +C G C C PG+ G C
Sbjct: 136 TGVYCEELCPPGSHGAHCELRCPCQNGGTCHHITGECACPPGWTGAVC 183
Score = 54.7 bits (130), Expect = 5e-08
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +1
Query: 325 SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQRS 477
+G HC+ CA G +G C C C N ++C G C C+PGF+G C ++
Sbjct: 700 TGQHCEQRCAPGTFGYGCQQLCECMNNSTCDHVTGTCYCSPGFKGIRCDQA 750
Score = 50.8 bits (120), Expect = 7e-07
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 328 GVHC-DSVCAEGRWGPNCSLPCYCK--NGASCSPDDGICECAPGFRGTTCQRS 477
G C + +C EG GP C+LPC C N SC P G C C PG+ G C S
Sbjct: 266 GPRCQERLCPEGLHGPGCTLPCPCDADNTISCHPVTGACTCQPGWSGHHCNES 318
Score = 49.7 bits (117), Expect = 2e-06
Identities = 24/69 (34%), Positives = 30/69 (42%), Gaps = 4/69 (5%)
Frame = +1
Query: 295 CHSASPLCLV----SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGT 462
CH + C +G C C G +G NCS C C +G C G C C G+ G
Sbjct: 165 CHHITGECACPPGWTGAVCAQPCPPGTFGQNCSQDCPCHHGGQCDHVTGQCHCTAGYMGD 224
Query: 463 TCQRSKCLF 489
CQ +C F
Sbjct: 225 RCQ-EECPF 232
Score = 48.5 bits (114), Expect = 3e-06
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 325 SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
+G+ C C +G +C C C+NGASC G C C GF G C++
Sbjct: 657 TGLFCTQRCPAAFFGKDCGRVCQCQNGASCDHISGKCTCRTGFTGQHCEQ 706
>gi|4557869|ref|NP_000450.1| (NM_000459) TEK tyrosine kinase,
endothelial [Homo sapiens]
Length = 1124
Score = 53.9 bits (128), Expect = 8e-08
Identities = 21/49 (42%), Positives = 29/49 (58%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
G+ C+ C G +GP+C L C C NG C G C C+PG++G C+R
Sbjct: 295 GLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQG-CLCSPGWQGLQCER 342
Score = 48.1 bits (113), Expect = 5e-06
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 349 CAEGRWGPNCSLPCY-CKNGASCSPDDGICECAPGFRGTTCQRS 477
C +WGP C+ C C N C D G C C PGF G TC+++
Sbjct: 211 CEAQKWGPECNHLCTACMNNGVCHEDTGECICPPGFMGRTCEKA 254
Score = 37.7 bits (86), Expect = 0.006
Identities = 20/69 (28%), Positives = 28/69 (39%), Gaps = 8/69 (11%)
Frame = +1
Query: 295 CHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPCY----CKNGASCSPDDGICECAPG 450
CH + C+ G C+ C +G C C CK+ C PD C CA G
Sbjct: 233 CHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATG 292
Query: 451 FRGTTCQRS 477
++G C +
Sbjct: 293 WKGLQCNEA 301
>gi|4885631|ref|NP_005415.1| (NM_005424) tyrosine kinase with
immunoglobulin and epidermal growth factor homology
domains; Tyrosine kinase with immunoglobulin and
epidermal growth factor [Homo sapiens]
Length = 1138
Score = 53.5 bits (127), Expect = 1e-07
Identities = 21/44 (47%), Positives = 26/44 (58%), Gaps = 1/44 (2%)
Frame = +1
Query: 349 CAEGRWGPNCSLPCY-CKNGASCSPDDGICECAPGFRGTTCQRS 477
C GRWGP C+ C C +G C DG C C PGF GT C+++
Sbjct: 215 CGAGRWGPGCTKECPGCLHGGVCHDHDGECVCPPGFTGTRCEQA 258
Score = 51.6 bits (122), Expect = 4e-07
Identities = 25/71 (35%), Positives = 33/71 (46%)
Frame = +1
Query: 265 LAFQMPTLTNCHSASPLCLVSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECA 444
L F +P C S G C CA G +G +C L C C+NG +C G C C
Sbjct: 281 LTFCLPDPYGCSCGSGW---RGSQCQEACAPGHFGADCRLQCQCQNGGTCDRFSG-CVCP 336
Query: 445 PGFRGTTCQRS 477
G+ G C++S
Sbjct: 337 SGWHGVHCEKS 347
Score = 49.3 bits (116), Expect = 2e-06
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Frame = +1
Query: 295 CHSASPLCLV----SGVHCDSVCAEGRWGPNCSLPCY----CKNGASCSPDDGICECAPG 450
CH C+ +G C+ C EGR+G +C C C+ C PD C C G
Sbjct: 237 CHDHDGECVCPPGFTGTRCEQACREGRFGQSCQEQCPGISGCRGLTFCLPDPYGCSCGSG 296
Query: 451 FRGTTCQRS 477
+RG+ CQ +
Sbjct: 297 WRGSQCQEA 305
>gi|33598935|ref|NP_663327.1| (NM_145352) scavenger receptor class
F, member 1 isoform 5 precursor; acetyl LDL receptor;
scavenger receptor expressed by endothelial cells [Homo
sapiens]
Length = 744
Score = 52.4 bits (124), Expect = 2e-07
Identities = 26/68 (38%), Positives = 35/68 (51%)
Frame = +1
Query: 295 CHSASPLCLVSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
C++A+ C + C VC G WG CS C C +G+ C D G C C PG+ G CQ+
Sbjct: 165 CNTAAARCEQATGAC--VCKPGWWGRRCSFRCNC-HGSPCEQDSGRCACRPGWWGPECQQ 221
Query: 475 SKCLFRGQ 498
RG+
Sbjct: 222 QCECVRGR 229
Score = 52.0 bits (123), Expect = 3e-07
Identities = 25/60 (41%), Positives = 27/60 (44%)
Frame = +1
Query: 292 NCHSASPLCLVSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQ 471
NCH + C C C G WGP C C C G CS G C C PGFRG C+
Sbjct: 195 NCHGSP--CEQDSGRC--ACRPGWWGPECQQQCECVRGR-CSAASGECTCPPGFRGARCE 249
Score = 52.0 bits (123), Expect = 3e-07
Identities = 18/42 (42%), Positives = 22/42 (51%)
Frame = +1
Query: 349 CAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
C RWG C PC C C P G+C C PG+ +TC+R
Sbjct: 120 CQADRWGARCEFPCACGPHGRCDPATGVCHCEPGWWSSTCRR 161
Score = 51.6 bits (122), Expect = 4e-07
Identities = 27/66 (40%), Positives = 33/66 (49%), Gaps = 6/66 (9%)
Frame = +1
Query: 295 CHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPC-YCKNGASCSPDDGICE-CAPGFR 456
C +AS C G C+ C G G C+ C CK+ CSPD G CE C PG+
Sbjct: 230 CSAASGECTCPPGFRGARCELPCPAGSHGVQCAHSCGRCKHNEPCSPDTGSCESCEPGWN 289
Query: 457 GTTCQR 474
GT CQ+
Sbjct: 290 GTQCQQ 295
Score = 47.0 bits (110), Expect = 1e-05
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQ 471
G HC S C WGP+C C C C P G C+C G C+
Sbjct: 83 GAHCSSRCPGQYWGPDCRESCPCHPHGQCEPATGACQCQADRWGARCE 130
Score = 45.1 bits (105), Expect = 4e-05
Identities = 21/62 (33%), Positives = 30/62 (47%), Gaps = 1/62 (1%)
Frame = +1
Query: 280 PTLTNCHSASPLCLVSGVHCDSVCAEGRWGPNCSLPC-YCKNGASCSPDDGICECAPGFR 456
P +C S P +G C C G +G +C C +C++G +C PD G C+ G R
Sbjct: 276 PDTGSCESCEPGW--NGTQCQQPCLPGTFGESCEQQCPHCRHGEACEPDTGHCQPGSGSR 333
Query: 457 GT 462
T
Sbjct: 334 DT 335
Score = 40.4 bits (93), Expect = 0.001
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +1
Query: 349 CAEGRWGPNCSLPCYCKNGAS-CSPDDGICECAPGFRGTTCQ-RSKC 483
C G W C PC C A+ C G C C PG+ G C R C
Sbjct: 150 CEPGWWSSTCRRPCQCNTAAARCEQATGACVCKPGWWGRRCSFRCNC 196
Score = 34.3 bits (77), Expect = 0.068
Identities = 20/65 (30%), Positives = 30/65 (45%), Gaps = 8/65 (12%)
Frame = +1
Query: 313 LCLVSGVHCDSVCAEGRW---GPNCSLPCYCKNGASCSPDD-----GICECAPGFRGTTC 468
+C+ S + C G W C++P C+ +C D+ G+C C PGF G C
Sbjct: 29 VCVASSPSAELQCCAG-WRQKDQECTIPI-CEGPDACQKDEVCVKPGLCRCKPGFFGAHC 86
Query: 469 QRSKC 483
S+C
Sbjct: 87 S-SRC 90
>gi|33598933|ref|NP_663326.1| (NM_145351) scavenger receptor class
F, member 1 isoform 4 precursor; acetyl LDL receptor;
scavenger receptor expressed by endothelial cells [Homo
sapiens]
Length = 337
Score = 52.4 bits (124), Expect = 2e-07
Identities = 26/68 (38%), Positives = 35/68 (51%)
Frame = +1
Query: 295 CHSASPLCLVSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
C++A+ C + C VC G WG CS C C +G+ C D G C C PG+ G CQ+
Sbjct: 165 CNTAAARCEQATGAC--VCKPGWWGRRCSFRCNC-HGSPCEQDSGRCACRPGWWGPECQQ 221
Query: 475 SKCLFRGQ 498
RG+
Sbjct: 222 QCECVRGR 229
Score = 52.0 bits (123), Expect = 3e-07
Identities = 25/60 (41%), Positives = 27/60 (44%)
Frame = +1
Query: 292 NCHSASPLCLVSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQ 471
NCH + C C C G WGP C C C G CS G C C PGFRG C+
Sbjct: 195 NCHGSP--CEQDSGRC--ACRPGWWGPECQQQCECVRGR-CSAASGECTCPPGFRGARCE 249
Score = 52.0 bits (123), Expect = 3e-07
Identities = 18/42 (42%), Positives = 22/42 (51%)
Frame = +1
Query: 349 CAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
C RWG C PC C C P G+C C PG+ +TC+R
Sbjct: 120 CQADRWGARCEFPCACGPHGRCDPATGVCHCEPGWWSSTCRR 161
Score = 51.6 bits (122), Expect = 4e-07
Identities = 27/66 (40%), Positives = 33/66 (49%), Gaps = 6/66 (9%)
Frame = +1
Query: 295 CHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPC-YCKNGASCSPDDGICE-CAPGFR 456
C +AS C G C+ C G G C+ C CK+ CSPD G CE C PG+
Sbjct: 230 CSAASGECTCPPGFRGARCELPCPAGSHGVQCAHSCGRCKHNEPCSPDTGSCESCEPGWN 289
Query: 457 GTTCQR 474
GT CQ+
Sbjct: 290 GTQCQQ 295
Score = 47.0 bits (110), Expect = 1e-05
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQ 471
G HC S C WGP+C C C C P G C+C G C+
Sbjct: 83 GAHCSSRCPGQYWGPDCRESCPCHPHGQCEPATGACQCQADRWGARCE 130
Score = 46.6 bits (109), Expect = 1e-05
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +1
Query: 280 PTLTNCHSASPLCLVSGVHCDSVCAEGRWGPNCSLPC-YCKNGASCSPDDGICE-CAPGF 453
P +C S P +G C C G +G +C C +C++G +C PD G C+ C PG+
Sbjct: 276 PDTGSCESCEPGW--NGTQCQQPCLPGTFGESCEQQCPHCRHGEACEPDTGHCQRCDPGW 333
Query: 454 RG 459
G
Sbjct: 334 LG 335
Score = 40.4 bits (93), Expect = 0.001
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +1
Query: 349 CAEGRWGPNCSLPCYCKNGAS-CSPDDGICECAPGFRGTTCQ-RSKC 483
C G W C PC C A+ C G C C PG+ G C R C
Sbjct: 150 CEPGWWSSTCRRPCQCNTAAARCEQATGACVCKPGWWGRRCSFRCNC 196
Score = 34.3 bits (77), Expect = 0.068
Identities = 20/65 (30%), Positives = 30/65 (45%), Gaps = 8/65 (12%)
Frame = +1
Query: 313 LCLVSGVHCDSVCAEGRW---GPNCSLPCYCKNGASCSPDD-----GICECAPGFRGTTC 468
+C+ S + C G W C++P C+ +C D+ G+C C PGF G C
Sbjct: 29 VCVASSPSAELQCCAG-WRQKDQECTIPI-CEGPDACQKDEVCVKPGLCRCKPGFFGAHC 86
Query: 469 QRSKC 483
S+C
Sbjct: 87 S-SRC 90
>gi|33598931|ref|NP_663325.1| (NM_145350) scavenger receptor class
F, member 1 isoform 3 precursor; acetyl LDL receptor;
scavenger receptor expressed by endothelial cells [Homo
sapiens]
Length = 569
Score = 52.4 bits (124), Expect = 2e-07
Identities = 26/68 (38%), Positives = 35/68 (51%)
Frame = +1
Query: 295 CHSASPLCLVSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
C++A+ C + C VC G WG CS C C +G+ C D G C C PG+ G CQ+
Sbjct: 165 CNTAAARCEQATGAC--VCKPGWWGRRCSFRCNC-HGSPCEQDSGRCACRPGWWGPECQQ 221
Query: 475 SKCLFRGQ 498
RG+
Sbjct: 222 QCECVRGR 229
Score = 52.0 bits (123), Expect = 3e-07
Identities = 25/60 (41%), Positives = 27/60 (44%)
Frame = +1
Query: 292 NCHSASPLCLVSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQ 471
NCH + C C C G WGP C C C G CS G C C PGFRG C+
Sbjct: 195 NCHGSP--CEQDSGRC--ACRPGWWGPECQQQCECVRGR-CSAASGECTCPPGFRGARCE 249
Score = 52.0 bits (123), Expect = 3e-07
Identities = 18/42 (42%), Positives = 22/42 (51%)
Frame = +1
Query: 349 CAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
C RWG C PC C C P G+C C PG+ +TC+R
Sbjct: 120 CQADRWGARCEFPCACGPHGRCDPATGVCHCEPGWWSSTCRR 161
Score = 51.6 bits (122), Expect = 4e-07
Identities = 27/66 (40%), Positives = 33/66 (49%), Gaps = 6/66 (9%)
Frame = +1
Query: 295 CHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPC-YCKNGASCSPDDGICE-CAPGFR 456
C +AS C G C+ C G G C+ C CK+ CSPD G CE C PG+
Sbjct: 230 CSAASGECTCPPGFRGARCELPCPAGSHGVQCAHSCGRCKHNEPCSPDTGSCESCEPGWN 289
Query: 457 GTTCQR 474
GT CQ+
Sbjct: 290 GTQCQQ 295
Score = 50.1 bits (118), Expect = 1e-06
Identities = 23/66 (34%), Positives = 34/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 280 PTLTNCHSASPLCLVSGVHCDSVCAEGRWGPNCSLPC-YCKNGASCSPDDGICE-CAPGF 453
P +C S P +G C C G +G +C C +C++G +C PD G C+ C PG+
Sbjct: 276 PDTGSCESCEPGW--NGTQCQQPCLPGTFGESCEQQCPHCRHGEACEPDTGHCQRCDPGW 333
Query: 454 RGTTCQ 471
G C+
Sbjct: 334 LGPRCE 339
Score = 47.0 bits (110), Expect = 1e-05
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQ 471
G HC S C WGP+C C C C P G C+C G C+
Sbjct: 83 GAHCSSRCPGQYWGPDCRESCPCHPHGQCEPATGACQCQADRWGARCE 130
Score = 44.3 bits (103), Expect = 7e-05
Identities = 26/73 (35%), Positives = 31/73 (41%), Gaps = 16/73 (21%)
Frame = +1
Query: 292 NCHSASPLCLVSG---VHCDSVCAEGRWGP-------------NCSLPCYCKNGASCSPD 423
+C S P C+ V D VC+ G WGP NCS+PC C G C P
Sbjct: 350 DCGSTCPTCVQGSCDTVTGDCVCSAGYWGPSCNASCPAGFHGNNCSVPCECPEGL-CHPV 408
Query: 424 DGICECAPGFRGT 462
G C+ G R T
Sbjct: 409 SGSCQPGSGSRDT 421
Score = 40.4 bits (93), Expect = 0.001
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +1
Query: 349 CAEGRWGPNCSLPCYCKNGAS-CSPDDGICECAPGFRGTTCQ-RSKC 483
C G W C PC C A+ C G C C PG+ G C R C
Sbjct: 150 CEPGWWSSTCRRPCQCNTAAARCEQATGACVCKPGWWGRRCSFRCNC 196
Score = 39.3 bits (90), Expect = 0.002
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +1
Query: 280 PTLTNCHSASPLCLVSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRG 459
P +C P L G C+ C G +G +C C SC G C C+ G+ G
Sbjct: 321 PDTGHCQRCDPGWL--GPRCEDPCPTGTFGEDCGSTCPTCVQGSCDTVTGDCVCSAGYWG 378
Query: 460 TTCQRS 477
+C S
Sbjct: 379 PSCNAS 384
Score = 34.3 bits (77), Expect = 0.068
Identities = 20/65 (30%), Positives = 30/65 (45%), Gaps = 8/65 (12%)
Frame = +1
Query: 313 LCLVSGVHCDSVCAEGRW---GPNCSLPCYCKNGASCSPDD-----GICECAPGFRGTTC 468
+C+ S + C G W C++P C+ +C D+ G+C C PGF G C
Sbjct: 29 VCVASSPSAELQCCAG-WRQKDQECTIPI-CEGPDACQKDEVCVKPGLCRCKPGFFGAHC 86
Query: 469 QRSKC 483
S+C
Sbjct: 87 S-SRC 90
>gi|21264602|ref|NP_005551.3| (NM_005560) laminin alpha 5; laminin
alpha-5 chain [Homo sapiens]
Length = 3695
Score = 52.4 bits (124), Expect = 2e-07
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGA----SCSPDDGICECAPGFRGTTCQR 474
G HC+ +CA G +GP C PC C + C PD G C C GF G TC R
Sbjct: 523 GTHCE-LCAPGFYGPGCQ-PCQCSSPGVADDRCDPDTGQCRCRVGFEGATCDR 573
Score = 42.0 bits (97), Expect = 3e-04
Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Frame = +1
Query: 298 HSASPLCL--VSGVHCDSVCAEGRWG-PNCS--LPCYC---KNGASCSPDDGICECAPGF 453
HS LC V+G CD C EG +G C PC C G+ C P G C C PG
Sbjct: 2036 HSGHCLCKAGVTGRRCDR-CQEGHFGFDGCGGCRPCACGPAAEGSECHPQSGQCHCRPGT 2094
Query: 454 RGTTCQ 471
G C+
Sbjct: 2095 MGPQCR 2100
Score = 38.9 bits (89), Expect = 0.003
Identities = 23/61 (37%), Positives = 27/61 (43%), Gaps = 4/61 (6%)
Frame = +1
Query: 325 SGVHCDSVCAEGRWG-PNCSLPCYCKNGASCSP---DDGICECAPGFRGTTCQRSKCLFR 492
+G HCD C G G PNC C C + G+C C PG+ GT CQ F
Sbjct: 612 AGPHCDR-CRPGYHGFPNCQA-CTCDPRGALDQLCGAGGLCRCRPGYTGTACQECSPGFH 669
Query: 493 G 495
G
Sbjct: 670 G 670
Score = 37.4 bits (85), Expect = 0.008
Identities = 25/70 (35%), Positives = 26/70 (36%), Gaps = 10/70 (14%)
Frame = +1
Query: 289 TNCHSASPLCL----VSGVHCDSVCAEGRWGPNCSLP------CYCKNGASCSPDDGICE 438
+ CH S C G C CA G WG LP C C G C P G C
Sbjct: 2079 SECHPQSGQCHCRPGTMGPQCRE-CAPGYWG----LPEQGCRRCQCPGGR-CDPHTGRCN 2132
Query: 439 CAPGFRGTTC 468
C PG G C
Sbjct: 2133 CPPGLSGERC 2142
Score = 33.5 bits (75), Expect = 0.12
Identities = 27/85 (31%), Positives = 30/85 (34%), Gaps = 11/85 (12%)
Frame = +1
Query: 274 QMPTLTNCHSASPLCLVSGVHCDSVCAEGRWGPNCSLP-----CYCK------NGASCSP 420
Q+P + H V G CD C G WG + S P C C A C P
Sbjct: 741 QVPCMCRAH-------VEGPSCDR-CKPGFWGLSPSNPEGCTRCSCDLRGTLGGVAECQP 792
Query: 421 DDGICECAPGFRGTTCQRSKCLFRG 495
G C C P G C K F G
Sbjct: 793 GTGQCFCKPHVCGQACASCKDGFFG 817
Score = 33.5 bits (75), Expect = 0.12
Identities = 19/53 (35%), Positives = 25/53 (46%), Gaps = 5/53 (9%)
Frame = +1
Query: 325 SGVHCDSVCAEGRWG-PNCSLPCYCKNG----ASCSPDDGICECAPGFRGTTC 468
+G C C+ G G P+C +PC+C A+C P G C C P G C
Sbjct: 657 TGTACQE-CSPGFHGFPSC-VPCHCSAEGSLHAACDPRSGQCSCRPRVTGLRC 707
Score = 33.1 bits (74), Expect = 0.15
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Frame = +1
Query: 286 LTNCHSASPLCLVSGVHCDSVCA---EGRWGPNCSLPCYCKN---------GASCSPDDG 429
+ C + C C CA +G +G + + C++ G SC P G
Sbjct: 787 VAECQPGTGQCFCKPHVCGQACASCKDGFFGLDQADYFGCRSCRCDIGGALGQSCEPRTG 846
Query: 430 ICECAPGFRGTTC 468
+C C P +G TC
Sbjct: 847 VCRCRPNTQGPTC 859
Score = 31.2 bits (69), Expect = 0.57
Identities = 40/144 (27%), Positives = 45/144 (30%), Gaps = 43/144 (29%)
Frame = +1
Query: 325 SGVHCDSVCAEGRWG-PNCS-------------LP------CYCK----NGASCSPDDGI 432
SG CD VCAEG G P+C LP C C G +C D +
Sbjct: 454 SGERCD-VCAEGFTGFPSCYPTPSSSNDTREQVLPAGQIVNCDCSAAGTQGNACRKDPRV 512
Query: 433 -------------CE-CAPGFRGTTCQRSKCLFRGQXX-----XXXXXXXXXXXNSQFCC 555
CE CAPGF G CQ +C G C
Sbjct: 513 GRCLCKPNFQGTHCELCAPGFYGPGCQPCQCSSPGVADDRCDPDTGQCRCRVGFEGATCD 572
Query: 556 R*XQGEHHRSFCSWQSCPPSIALP 627
R G H C C P+ LP
Sbjct: 573 RCAPGYFHFPLCQLCGCSPAGTLP 596
Score = 31.2 bits (69), Expect = 0.57
Identities = 19/57 (33%), Positives = 24/57 (41%), Gaps = 7/57 (12%)
Frame = +1
Query: 325 SGVHCDSVCAEGRWGPNCSLPCYCKN-------GASCSPDDGICECAPGFRGTTCQR 474
+G C+ +CA G +G N LP C +C P G C C G G C R
Sbjct: 1999 TGPRCE-ICAPGFYG-NALLPGNCTRCDCTPCGTEACDPHSGHCLCKAGVTGRRCDR 2053
Score = 30.8 bits (68), Expect = 0.75
Identities = 19/56 (33%), Positives = 25/56 (43%), Gaps = 5/56 (8%)
Frame = +1
Query: 322 VSGVHCDSVCAEGRWG-PNCSLPCYCKNGAS----CSPDDGICECAPGFRGTTCQR 474
V+G CD+ C+ G G P C PC C + C P G C C +G C +
Sbjct: 1556 VTGRRCDT-CSPGFHGYPRCR-PCDCHEAGTAPGVCDPLTGQCYCKENVQGPKCDQ 1609
Score = 30.4 bits (67), Expect = 0.98
Identities = 23/65 (35%), Positives = 24/65 (36%), Gaps = 14/65 (21%)
Frame = +1
Query: 295 CH---SASPLCLVSGVHCD----------SVCAEGRWG-PNCSLPCYCKNGASCSPDDGI 432
CH + P C G C S CA G WG PNC PC C C G
Sbjct: 1440 CHEVGATGPTCEPFGGQCPCHAHVIGRDCSRCATGYWGFPNCR-PCDC-GARLCDELTGQ 1497
Query: 433 CECAP 447
C C P
Sbjct: 1498 CICPP 1502
Score = 27.3 bits (59), Expect = 8.3
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +1
Query: 373 NCSLPCYCK-NGASCSPDDGICECAPGFRGTTCQRSKCLFRG 495
NCS P + +C D G C+C P G C F G
Sbjct: 1529 NCSGPGIQELTDPTCDTDSGQCKCRPNVTGRRCDTCSPGFHG 1570
>gi|33598929|ref|NP_003684.2| (NM_003693) scavenger receptor class
F, member 1 isoform 1 precursor; acetyl LDL receptor;
scavenger receptor expressed by endothelial cells [Homo
sapiens]
Length = 830
Score = 52.4 bits (124), Expect = 2e-07
Identities = 26/68 (38%), Positives = 35/68 (51%)
Frame = +1
Query: 295 CHSASPLCLVSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
C++A+ C + C VC G WG CS C C +G+ C D G C C PG+ G CQ+
Sbjct: 165 CNTAAARCEQATGAC--VCKPGWWGRRCSFRCNC-HGSPCEQDSGRCACRPGWWGPECQQ 221
Query: 475 SKCLFRGQ 498
RG+
Sbjct: 222 QCECVRGR 229
Score = 52.0 bits (123), Expect = 3e-07
Identities = 25/60 (41%), Positives = 27/60 (44%)
Frame = +1
Query: 292 NCHSASPLCLVSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQ 471
NCH + C C C G WGP C C C G CS G C C PGFRG C+
Sbjct: 195 NCHGSP--CEQDSGRC--ACRPGWWGPECQQQCECVRGR-CSAASGECTCPPGFRGARCE 249
Score = 52.0 bits (123), Expect = 3e-07
Identities = 18/42 (42%), Positives = 22/42 (51%)
Frame = +1
Query: 349 CAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
C RWG C PC C C P G+C C PG+ +TC+R
Sbjct: 120 CQADRWGARCEFPCACGPHGRCDPATGVCHCEPGWWSSTCRR 161
Score = 51.6 bits (122), Expect = 4e-07
Identities = 27/66 (40%), Positives = 33/66 (49%), Gaps = 6/66 (9%)
Frame = +1
Query: 295 CHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPC-YCKNGASCSPDDGICE-CAPGFR 456
C +AS C G C+ C G G C+ C CK+ CSPD G CE C PG+
Sbjct: 230 CSAASGECTCPPGFRGARCELPCPAGSHGVQCAHSCGRCKHNEPCSPDTGSCESCEPGWN 289
Query: 457 GTTCQR 474
GT CQ+
Sbjct: 290 GTQCQQ 295
Score = 50.1 bits (118), Expect = 1e-06
Identities = 23/66 (34%), Positives = 34/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 280 PTLTNCHSASPLCLVSGVHCDSVCAEGRWGPNCSLPC-YCKNGASCSPDDGICE-CAPGF 453
P +C S P +G C C G +G +C C +C++G +C PD G C+ C PG+
Sbjct: 276 PDTGSCESCEPGW--NGTQCQQPCLPGTFGESCEQQCPHCRHGEACEPDTGHCQRCDPGW 333
Query: 454 RGTTCQ 471
G C+
Sbjct: 334 LGPRCE 339
Score = 47.0 bits (110), Expect = 1e-05
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQ 471
G HC S C WGP+C C C C P G C+C G C+
Sbjct: 83 GAHCSSRCPGQYWGPDCRESCPCHPHGQCEPATGACQCQADRWGARCE 130
Score = 44.3 bits (103), Expect = 7e-05
Identities = 26/73 (35%), Positives = 31/73 (41%), Gaps = 16/73 (21%)
Frame = +1
Query: 292 NCHSASPLCLVSG---VHCDSVCAEGRWGP-------------NCSLPCYCKNGASCSPD 423
+C S P C+ V D VC+ G WGP NCS+PC C G C P
Sbjct: 350 DCGSTCPTCVQGSCDTVTGDCVCSAGYWGPSCNASCPAGFHGNNCSVPCECPEGL-CHPV 408
Query: 424 DGICECAPGFRGT 462
G C+ G R T
Sbjct: 409 SGSCQPGSGSRDT 421
Score = 40.4 bits (93), Expect = 0.001
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +1
Query: 349 CAEGRWGPNCSLPCYCKNGAS-CSPDDGICECAPGFRGTTCQ-RSKC 483
C G W C PC C A+ C G C C PG+ G C R C
Sbjct: 150 CEPGWWSSTCRRPCQCNTAAARCEQATGACVCKPGWWGRRCSFRCNC 196
Score = 39.3 bits (90), Expect = 0.002
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +1
Query: 280 PTLTNCHSASPLCLVSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRG 459
P +C P L G C+ C G +G +C C SC G C C+ G+ G
Sbjct: 321 PDTGHCQRCDPGWL--GPRCEDPCPTGTFGEDCGSTCPTCVQGSCDTVTGDCVCSAGYWG 378
Query: 460 TTCQRS 477
+C S
Sbjct: 379 PSCNAS 384
Score = 34.3 bits (77), Expect = 0.068
Identities = 20/65 (30%), Positives = 30/65 (45%), Gaps = 8/65 (12%)
Frame = +1
Query: 313 LCLVSGVHCDSVCAEGRW---GPNCSLPCYCKNGASCSPDD-----GICECAPGFRGTTC 468
+C+ S + C G W C++P C+ +C D+ G+C C PGF G C
Sbjct: 29 VCVASSPSAELQCCAG-WRQKDQECTIPI-CEGPDACQKDEVCVKPGLCRCKPGFFGAHC 86
Query: 469 QRSKC 483
S+C
Sbjct: 87 S-SRC 90
>gi|33598927|ref|NP_663324.1| (NM_145349) scavenger receptor class
F, member 1 isoform 2 precursor; acetyl LDL receptor;
scavenger receptor expressed by endothelial cells [Homo
sapiens]
Length = 342
Score = 52.4 bits (124), Expect = 2e-07
Identities = 26/68 (38%), Positives = 35/68 (51%)
Frame = +1
Query: 295 CHSASPLCLVSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
C++A+ C + C VC G WG CS C C +G+ C D G C C PG+ G CQ+
Sbjct: 165 CNTAAARCEQATGAC--VCKPGWWGRRCSFRCNC-HGSPCEQDSGRCACRPGWWGPECQQ 221
Query: 475 SKCLFRGQ 498
RG+
Sbjct: 222 QCECVRGR 229
Score = 52.0 bits (123), Expect = 3e-07
Identities = 25/60 (41%), Positives = 27/60 (44%)
Frame = +1
Query: 292 NCHSASPLCLVSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQ 471
NCH + C C C G WGP C C C G CS G C C PGFRG C+
Sbjct: 195 NCHGSP--CEQDSGRC--ACRPGWWGPECQQQCECVRGR-CSAASGECTCPPGFRGARCE 249
Score = 52.0 bits (123), Expect = 3e-07
Identities = 18/42 (42%), Positives = 22/42 (51%)
Frame = +1
Query: 349 CAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
C RWG C PC C C P G+C C PG+ +TC+R
Sbjct: 120 CQADRWGARCEFPCACGPHGRCDPATGVCHCEPGWWSSTCRR 161
Score = 51.6 bits (122), Expect = 4e-07
Identities = 27/66 (40%), Positives = 33/66 (49%), Gaps = 6/66 (9%)
Frame = +1
Query: 295 CHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPC-YCKNGASCSPDDGICE-CAPGFR 456
C +AS C G C+ C G G C+ C CK+ CSPD G CE C PG+
Sbjct: 230 CSAASGECTCPPGFRGARCELPCPAGSHGVQCAHSCGRCKHNEPCSPDTGSCESCEPGWN 289
Query: 457 GTTCQR 474
GT CQ+
Sbjct: 290 GTQCQQ 295
Score = 47.0 bits (110), Expect = 1e-05
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQ 471
G HC S C WGP+C C C C P G C+C G C+
Sbjct: 83 GAHCSSRCPGQYWGPDCRESCPCHPHGQCEPATGACQCQADRWGARCE 130
Score = 46.6 bits (109), Expect = 1e-05
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +1
Query: 280 PTLTNCHSASPLCLVSGVHCDSVCAEGRWGPNCSLPC-YCKNGASCSPDDGICE-CAPGF 453
P +C S P +G C C G +G +C C +C++G +C PD G C+ C PG+
Sbjct: 276 PDTGSCESCEPGW--NGTQCQQPCLPGTFGESCEQQCPHCRHGEACEPDTGHCQRCDPGW 333
Query: 454 RG 459
G
Sbjct: 334 LG 335
Score = 40.4 bits (93), Expect = 0.001
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +1
Query: 349 CAEGRWGPNCSLPCYCKNGAS-CSPDDGICECAPGFRGTTCQ-RSKC 483
C G W C PC C A+ C G C C PG+ G C R C
Sbjct: 150 CEPGWWSSTCRRPCQCNTAAARCEQATGACVCKPGWWGRRCSFRCNC 196
Score = 34.3 bits (77), Expect = 0.068
Identities = 20/65 (30%), Positives = 30/65 (45%), Gaps = 8/65 (12%)
Frame = +1
Query: 313 LCLVSGVHCDSVCAEGRW---GPNCSLPCYCKNGASCSPDD-----GICECAPGFRGTTC 468
+C+ S + C G W C++P C+ +C D+ G+C C PGF G C
Sbjct: 29 VCVASSPSAELQCCAG-WRQKDQECTIPI-CEGPDACQKDEVCVKPGLCRCKPGFFGAHC 86
Query: 469 QRSKC 483
S+C
Sbjct: 87 S-SRC 90
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Sep 13, 2003 12:13 AM
Number of letters in database: 10,428,096
Number of sequences in database: 19,804
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,996,550
Number of Sequences: 19804
Number of extensions: 450935
Number of successful extensions: 2142
Number of sequences better than 10.0: 166
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2033
length of database: 10,428,096
effective HSP length: 96
effective length of database: 8,526,912
effective search space used: 1261982976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20030826S-018738 (20030826S-018738) 20030826S-018738
(736 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
16,274 sequences; 7,609,334 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|27369722|ref|NP_766110.1| (NM_172522) RIKEN cDNA 2410080H04 [... 93 1e-19
Alignment gi|22779881|ref|NP_082736.1| (NM_028460) Jedi [Mus musculus] 71 5e-13
Alignment gi|33239429|ref|NP_690012.1| (NM_152799) Jedi soluble isoform 73... 71 5e-13
Alignment gi|26986573|ref|NP_758477.1| (NM_172273) EGF-like-domain, multip... 64 4e-11
Alignment gi|8567412|ref|NP_038718.1| (NM_013690) endothelial-specific rec... 56 1e-08
Alignment gi|6755785|ref|NP_035717.1| (NM_011587) tyrosine kinase receptor... 52 2e-07
Alignment gi|20149764|ref|NP_619614.1| (NM_138673) stabilin-2 [Mus musculus] 47 6e-06
Alignment gi|7305197|ref|NP_038850.1| (NM_013822) jagged 1; headturner [Mu... 46 1e-05
Alignment gi|30794508|ref|NP_038824.1| (NM_013796) N-acetylglucosamine-1-p... 46 1e-05
Alignment gi|33859490|ref|NP_032508.1| (NM_008482) laminin B1 subunit 1 [M... 46 2e-05
>gi|27369722|ref|NP_766110.1| (NM_172522) RIKEN cDNA 2410080H04 [Mus
musculus]
Length = 947
Score = 92.8 bits (229), Expect = 1e-19
Identities = 35/50 (70%), Positives = 40/50 (80%)
Frame = +1
Query: 325 SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
+G+ CDS C GRWGPNCS+ C C+NG SCSP+DG CECAPGFRG CQR
Sbjct: 526 TGIRCDSTCPPGRWGPNCSVSCSCENGGSCSPEDGSCECAPGFRGPLCQR 575
Score = 64.7 bits (156), Expect = 3e-11
Identities = 24/48 (50%), Positives = 30/48 (62%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQ 471
G+ C C G WG NC+ C C NGA+CSP DG C C PG+ G +C+
Sbjct: 441 GLDCSLPCPSGTWGLNCNETCICANGAACSPFDGSCACTPGWLGDSCE 488
Score = 63.9 bits (154), Expect = 6e-11
Identities = 27/63 (42%), Positives = 33/63 (51%), Gaps = 4/63 (6%)
Frame = +1
Query: 292 NCHSASPLCLV----SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRG 459
+CH + C SG +C+ C G +G C LPC C+NGA C G C CAPGF G
Sbjct: 339 SCHPVTGACTCQPGWSGHYCNESCPAGYYGNGCQLPCTCQNGADCHSITGSCTCAPGFMG 398
Query: 460 TTC 468
C
Sbjct: 399 EVC 401
Score = 63.9 bits (154), Expect = 6e-11
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +1
Query: 292 NCHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRG 459
+CHS + C + G C CA G +GPNCS C C NG +CSP DG C C G++G
Sbjct: 382 DCHSITGSCTCAPGFMGEVCAVPCAAGTYGPNCSSVCSCSNGGTCSPVDGSCTCREGWQG 441
Query: 460 TTC 468
C
Sbjct: 442 LDC 444
Score = 62.8 bits (151), Expect = 1e-10
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Frame = +1
Query: 295 CHSASPLCLV----SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGT 462
CH S +C SG C+ VCA G +G +C+ C C N +CSP DG C+C PG+ G
Sbjct: 600 CHHISGICECLPGFSGALCNQVCAGGHFGQDCAQLCSCANNGTCSPIDGSCQCFPGWIGK 659
Query: 463 TCQR 474
C +
Sbjct: 660 DCSQ 663
Score = 62.4 bits (150), Expect = 2e-10
Identities = 36/94 (38%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +1
Query: 208 PCPLLPGV-SQF*DHDLVSHLAFQMPTLTN-CHSASPLCLVSGVHCDSVCAEGRWGPNCS 381
PCP PG Q D H Q +T CH + G C C G +G CS
Sbjct: 229 PCP--PGTFGQNCSQDCPCHHGGQCDHVTGQCHCTAGYM---GDRCQEECPFGTFGFLCS 283
Query: 382 LPCYCKNGASCSPDDGICECAPGFRGTTCQRSKC 483
C C NG CSP G CEC PG++G +CQ C
Sbjct: 284 QRCDCHNGGQCSPATGACECEPGYKGPSCQERLC 317
Score = 60.8 bits (146), Expect = 5e-10
Identities = 23/41 (56%), Positives = 27/41 (65%)
Frame = +1
Query: 349 CAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQ 471
C WGP+CS C C+NGA C+P G C CAPGFRG C+
Sbjct: 101 CDSEHWGPHCSNRCQCQNGALCNPITGACVCAPGFRGWRCE 141
Score = 59.3 bits (142), Expect = 1e-09
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +1
Query: 295 CHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGT 462
C+ + C+ + G C+ +CA G G C L C C +GASC P G C CAPG+ G
Sbjct: 122 CNPITGACVCAPGFRGWRCEELCAPGTHGKGCQLLCQCHHGASCDPRTGECLCAPGYTGV 181
Query: 463 TCQ 471
C+
Sbjct: 182 YCE 184
Score = 56.6 bits (135), Expect = 9e-09
Identities = 22/51 (43%), Positives = 29/51 (56%)
Frame = +1
Query: 325 SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQRS 477
SG HC+ CA G +G C C C N A+C G C C+PGF+G C ++
Sbjct: 700 SGRHCEQRCAPGTFGYGCQQLCECMNNATCDHVTGTCYCSPGFKGIRCDQA 750
Score = 54.7 bits (130), Expect = 4e-08
Identities = 20/48 (41%), Positives = 28/48 (57%)
Frame = +1
Query: 325 SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTC 468
+GV+C+ +C G G +C L C C+NG +C G C C PG+ G C
Sbjct: 179 TGVYCEELCPPGSHGAHCELRCPCQNGGTCHHITGECACPPGWTGAVC 226
Score = 51.2 bits (121), Expect = 4e-07
Identities = 22/48 (45%), Positives = 27/48 (55%), Gaps = 2/48 (4%)
Frame = +1
Query: 340 DSVCAEGRWGPNCSLPCYC--KNGASCSPDDGICECAPGFRGTTCQRS 477
+ +C EG GP C+LPC C +N SC P G C C PG+ G C S
Sbjct: 314 ERLCPEGLHGPGCTLPCPCDTENTISCHPVTGACTCQPGWSGHYCNES 361
Score = 49.7 bits (117), Expect = 1e-06
Identities = 24/69 (34%), Positives = 30/69 (42%), Gaps = 4/69 (5%)
Frame = +1
Query: 295 CHSASPLCLV----SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGT 462
CH + C +G C C G +G NCS C C +G C G C C G+ G
Sbjct: 208 CHHITGECACPPGWTGAVCAQPCPPGTFGQNCSQDCPCHHGGQCDHVTGQCHCTAGYMGD 267
Query: 463 TCQRSKCLF 489
CQ +C F
Sbjct: 268 RCQ-EECPF 275
Score = 46.6 bits (109), Expect = 1e-05
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
G C C +G +C C C+NGASC G C C GF G C++
Sbjct: 658 GKDCSQGCPSAFFGKDCGHICQCQNGASCDHITGKCTCRTGFSGRHCEQ 706
>gi|22779881|ref|NP_082736.1| (NM_028460) Jedi [Mus musculus]
Length = 1034
Score = 70.9 bits (172), Expect = 5e-13
Identities = 28/49 (57%), Positives = 32/49 (65%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
G C C EG WG NCS C CKNG +C ++G C CAPGFRG +CQR
Sbjct: 558 GTRCHLPCPEGFWGANCSNTCTCKNGGTCVSENGNCVCAPGFRGPSCQR 606
Score = 60.8 bits (146), Expect = 5e-10
Identities = 24/64 (37%), Positives = 31/64 (47%), Gaps = 4/64 (6%)
Frame = +1
Query: 289 TNCHSASPLCLV----SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFR 456
++CH + C +G C C G WG CS C C +G +C P DG C C PG+
Sbjct: 627 SSCHPSDGTCSCLAGWTGPDCSEACPPGHWGLKCSQLCQCHHGGTCHPQDGSCICTPGWT 686
Query: 457 GTTC 468
G C
Sbjct: 687 GPNC 690
Score = 57.4 bits (137), Expect = 5e-09
Identities = 23/63 (36%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Frame = +1
Query: 292 NCHSASPLCLV----SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRG 459
+CH C +G+HC+ C + GP C C C +G C D G+C CAPG+ G
Sbjct: 370 SCHPMHGECSCQPGWAGLHCNESCPQDTHGPGCQEHCLCLHGGLCLADSGLCRCAPGYTG 429
Query: 460 TTC 468
C
Sbjct: 430 PHC 432
Score = 57.0 bits (136), Expect = 7e-09
Identities = 24/48 (50%), Positives = 26/48 (54%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQ 471
GV C C EG GPNC+ C C NG C G C CAPG+ G CQ
Sbjct: 254 GVICSLPCPEGFHGPNCTQECRCHNGGLCDRFTGQCHCAPGYIGDRCQ 301
Score = 55.5 bits (132), Expect = 2e-08
Identities = 21/47 (44%), Positives = 24/47 (50%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTC 468
G C S CA G WGP C C+C N +SC P G C C G + C
Sbjct: 126 GGDCSSECAPGMWGPQCDKFCHCGNNSSCDPKSGTCFCPSGLQPPNC 172
Score = 54.7 bits (130), Expect = 4e-08
Identities = 20/46 (43%), Positives = 24/46 (51%)
Frame = +1
Query: 334 HCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQ 471
+C C G WG NC+ C C + CSP G C C PG+ G CQ
Sbjct: 474 NCSVPCPLGTWGFNCNASCQCAHDGVCSPQTGACTCTPGWHGAHCQ 519
Score = 53.1 bits (126), Expect = 1e-07
Identities = 24/62 (38%), Positives = 33/62 (52%), Gaps = 4/62 (6%)
Frame = +1
Query: 295 CHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGT 462
C + S LC + G HC ++C +G NCS C C+N +CSP DG C C G++
Sbjct: 414 CLADSGLCRCAPGYTGPHCANLCPPDTYGINCSSRCSCENAIACSPIDGTCICKEGWQRG 473
Query: 463 TC 468
C
Sbjct: 474 NC 475
Score = 51.6 bits (122), Expect = 3e-07
Identities = 26/64 (40%), Positives = 32/64 (49%), Gaps = 4/64 (6%)
Frame = +1
Query: 289 TNCHSASPLCLV-SGV---HCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFR 456
++C S C SG+ +C C G +GP C C C GASC P DG C C PG
Sbjct: 152 SSCDPKSGTCFCPSGLQPPNCLQPCPAGHYGPACQFDCQC-YGASCDPQDGACFCPPGRA 210
Query: 457 GTTC 468
G +C
Sbjct: 211 GPSC 214
Score = 51.2 bits (121), Expect = 4e-07
Identities = 24/63 (38%), Positives = 28/63 (44%)
Frame = +1
Query: 295 CHSASPLCLVSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
CH A G C C GR+G +C+ C C GA C P +G C C GF G C
Sbjct: 289 CHCAPGYI---GDRCQEECPVGRFGQDCAETCDCAPGARCFPANGACLCEHGFTGDRCTE 345
Query: 475 SKC 483
C
Sbjct: 346 RLC 348
Score = 49.7 bits (117), Expect = 1e-06
Identities = 25/68 (36%), Positives = 35/68 (50%), Gaps = 7/68 (10%)
Frame = +1
Query: 295 CHSASPLCLV----SGVHC-DSVCAEGRWGPNCSLPCYC--KNGASCSPDDGICECAPGF 453
C A+ CL +G C + +C +GR+G +C PC C ++ SC P G C C PG+
Sbjct: 325 CFPANGACLCEHGFTGDRCTERLCPDGRYGLSCQEPCTCDPEHSLSCHPMHGECSCQPGW 384
Query: 454 RGTTCQRS 477
G C S
Sbjct: 385 AGLHCNES 392
Score = 49.3 bits (116), Expect = 1e-06
Identities = 22/63 (34%), Positives = 28/63 (43%), Gaps = 4/63 (6%)
Frame = +1
Query: 295 CHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGT 462
CH C+ + G +C C +G NCS C C G C P+ G C C PG G
Sbjct: 672 CHPQDGSCICTPGWTGPNCLEGCPPRMFGVNCSQLCQCDLGEMCHPETGACVCPPGHSGA 731
Query: 463 TCQ 471
C+
Sbjct: 732 DCK 734
Score = 46.2 bits (108), Expect = 1e-05
Identities = 20/51 (39%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNG-ASCSPDDGICECAPGFRGTTCQRS 477
G C C GR+G C + C C N +SC P DG C C G+ G C +
Sbjct: 601 GPSCQRPCPPGRYGKRC-VQCKCNNNHSSCHPSDGTCSCLAGWTGPDCSEA 650
Score = 42.7 bits (99), Expect = 1e-04
Identities = 22/69 (31%), Positives = 27/69 (38%), Gaps = 18/69 (26%)
Frame = +1
Query: 316 CLVSGVHCDS-----VCAEGRWGPNCSLPCY-------------CKNGASCSPDDGICEC 441
C G CD C GR GP+C++PC C+NG G C C
Sbjct: 189 CQCYGASCDPQDGACFCPPGRAGPSCNVPCSQGTDGFFCPRTYPCQNGGVPQGSQGSCSC 248
Query: 442 APGFRGTTC 468
PG+ G C
Sbjct: 249 PPGWMGVIC 257
Score = 36.2 bits (82), Expect = 0.013
Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 17/76 (22%)
Frame = +1
Query: 292 NCHSASPLCLVSGVHCDSV----CAEGRWGPNCSLP-------------CYCKNGASCSP 420
NC+ AS C GV C G G +C LP C C + C P
Sbjct: 487 NCN-ASCQCAHDGVCSPQTGACTCTPGWHGAHCQLPCPKGQFGEGCASVCDCDHSDGCDP 545
Query: 421 DDGICECAPGFRGTTC 468
G C C G+ GT C
Sbjct: 546 VHGQCRCQAGWMGTRC 561
Score = 28.5 bits (62), Expect = 2.7
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = +1
Query: 337 CDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
C C GR C P C+ D ECAPG G C +
Sbjct: 103 CAQECVHGR----CVAPNQCQCAPGWRGGDCSSECAPGMWGPQCDK 144
>gi|33239429|ref|NP_690012.1| (NM_152799) Jedi soluble isoform 736;
Jedi [Mus musculus]
Length = 747
Score = 70.9 bits (172), Expect = 5e-13
Identities = 28/49 (57%), Positives = 32/49 (65%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
G C C EG WG NCS C CKNG +C ++G C CAPGFRG +CQR
Sbjct: 558 GTRCHLPCPEGFWGANCSNTCTCKNGGTCVSENGNCVCAPGFRGPSCQR 606
Score = 60.8 bits (146), Expect = 5e-10
Identities = 24/64 (37%), Positives = 31/64 (47%), Gaps = 4/64 (6%)
Frame = +1
Query: 289 TNCHSASPLCLV----SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFR 456
++CH + C +G C C G WG CS C C +G +C P DG C C PG+
Sbjct: 627 SSCHPSDGTCSCLAGWTGPDCSEACPPGHWGLKCSQLCQCHHGGTCHPQDGSCICTPGWT 686
Query: 457 GTTC 468
G C
Sbjct: 687 GPNC 690
Score = 57.4 bits (137), Expect = 5e-09
Identities = 23/63 (36%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Frame = +1
Query: 292 NCHSASPLCLV----SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRG 459
+CH C +G+HC+ C + GP C C C +G C D G+C CAPG+ G
Sbjct: 370 SCHPMHGECSCQPGWAGLHCNESCPQDTHGPGCQEHCLCLHGGLCLADSGLCRCAPGYTG 429
Query: 460 TTC 468
C
Sbjct: 430 PHC 432
Score = 57.0 bits (136), Expect = 7e-09
Identities = 24/48 (50%), Positives = 26/48 (54%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQ 471
GV C C EG GPNC+ C C NG C G C CAPG+ G CQ
Sbjct: 254 GVICSLPCPEGFHGPNCTQECRCHNGGLCDRFTGQCHCAPGYIGDRCQ 301
Score = 55.5 bits (132), Expect = 2e-08
Identities = 21/47 (44%), Positives = 24/47 (50%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTC 468
G C S CA G WGP C C+C N +SC P G C C G + C
Sbjct: 126 GGDCSSECAPGMWGPQCDKFCHCGNNSSCDPKSGACFCPSGLQPPNC 172
Score = 54.7 bits (130), Expect = 4e-08
Identities = 20/46 (43%), Positives = 24/46 (51%)
Frame = +1
Query: 334 HCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQ 471
+C C G WG NC+ C C + CSP G C C PG+ G CQ
Sbjct: 474 NCSVPCPLGTWGFNCNASCQCAHDGVCSPQTGACTCTPGWHGAHCQ 519
Score = 53.1 bits (126), Expect = 1e-07
Identities = 24/62 (38%), Positives = 33/62 (52%), Gaps = 4/62 (6%)
Frame = +1
Query: 295 CHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGT 462
C + S LC + G HC ++C +G NCS C C+N +CSP DG C C G++
Sbjct: 414 CLADSGLCRCAPGYTGPHCANLCPPDTYGINCSSRCSCENAIACSPIDGTCICKEGWQRG 473
Query: 463 TC 468
C
Sbjct: 474 NC 475
Score = 51.6 bits (122), Expect = 3e-07
Identities = 26/64 (40%), Positives = 32/64 (49%), Gaps = 4/64 (6%)
Frame = +1
Query: 289 TNCHSASPLCLV-SGV---HCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFR 456
++C S C SG+ +C C G +GP C C C GASC P DG C C PG
Sbjct: 152 SSCDPKSGACFCPSGLQPPNCLQPCPAGHYGPACQFDCQC-YGASCDPQDGACFCPPGRA 210
Query: 457 GTTC 468
G +C
Sbjct: 211 GPSC 214
Score = 51.2 bits (121), Expect = 4e-07
Identities = 24/63 (38%), Positives = 28/63 (44%)
Frame = +1
Query: 295 CHSASPLCLVSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
CH A G C C GR+G +C+ C C GA C P +G C C GF G C
Sbjct: 289 CHCAPGYI---GDRCQEECPVGRFGQDCAETCDCAPGARCFPANGACLCEHGFTGDRCTE 345
Query: 475 SKC 483
C
Sbjct: 346 RLC 348
Score = 49.7 bits (117), Expect = 1e-06
Identities = 25/68 (36%), Positives = 35/68 (50%), Gaps = 7/68 (10%)
Frame = +1
Query: 295 CHSASPLCLV----SGVHC-DSVCAEGRWGPNCSLPCYC--KNGASCSPDDGICECAPGF 453
C A+ CL +G C + +C +GR+G +C PC C ++ SC P G C C PG+
Sbjct: 325 CFPANGACLCEHGFTGDRCTERLCPDGRYGLSCQEPCTCDPEHSLSCHPMHGECSCQPGW 384
Query: 454 RGTTCQRS 477
G C S
Sbjct: 385 AGLHCNES 392
Score = 48.5 bits (114), Expect = 3e-06
Identities = 22/63 (34%), Positives = 27/63 (41%), Gaps = 4/63 (6%)
Frame = +1
Query: 295 CHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGT 462
CH C+ + G +C C +G NCS C C G C P G C C PG G
Sbjct: 672 CHPQDGSCICTPGWTGPNCLEGCPPRMFGVNCSQLCQCDLGEMCHPQTGACVCPPGHSGA 731
Query: 463 TCQ 471
C+
Sbjct: 732 DCK 734
Score = 46.2 bits (108), Expect = 1e-05
Identities = 20/51 (39%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNG-ASCSPDDGICECAPGFRGTTCQRS 477
G C C GR+G C + C C N +SC P DG C C G+ G C +
Sbjct: 601 GPSCQRPCPPGRYGKRC-VQCKCNNNHSSCHPSDGTCSCLAGWTGPDCSEA 650
Score = 42.7 bits (99), Expect = 1e-04
Identities = 22/69 (31%), Positives = 27/69 (38%), Gaps = 18/69 (26%)
Frame = +1
Query: 316 CLVSGVHCDS-----VCAEGRWGPNCSLPCY-------------CKNGASCSPDDGICEC 441
C G CD C GR GP+C++PC C+NG G C C
Sbjct: 189 CQCYGASCDPQDGACFCPPGRAGPSCNVPCSQGTDGFFCPRTYPCQNGGVPQGSQGSCSC 248
Query: 442 APGFRGTTC 468
PG+ G C
Sbjct: 249 PPGWMGVIC 257
Score = 36.2 bits (82), Expect = 0.013
Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 17/76 (22%)
Frame = +1
Query: 292 NCHSASPLCLVSGVHCDSV----CAEGRWGPNCSLP-------------CYCKNGASCSP 420
NC+ AS C GV C G G +C LP C C + C P
Sbjct: 487 NCN-ASCQCAHDGVCSPQTGACTCTPGWHGAHCQLPCPKGQFGEGCASVCDCDHSDGCDP 545
Query: 421 DDGICECAPGFRGTTC 468
G C C G+ GT C
Sbjct: 546 VHGQCRCQAGWMGTRC 561
Score = 28.5 bits (62), Expect = 2.7
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = +1
Query: 337 CDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
C C GR C P C+ D ECAPG G C +
Sbjct: 103 CAQECVHGR----CVAPNQCQCAPGWRGGDCSSECAPGMWGPQCDK 144
>gi|26986573|ref|NP_758477.1| (NM_172273) EGF-like-domain, multiple
3 [Mus musculus]
Length = 546
Score = 64.3 bits (155), Expect = 4e-11
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 295 CHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGT 462
CH+ + C G HC+ C GR+G C L C C+N SC P G C C PGF G
Sbjct: 332 CHATNGSCSCPLGWMGPHCEHACPAGRYGAACLLECSCQNNGSCEPTSGACLCGPGFYGQ 391
Query: 463 TCQ 471
C+
Sbjct: 392 ACE 394
Score = 63.5 bits (153), Expect = 8e-11
Identities = 29/68 (42%), Positives = 34/68 (49%), Gaps = 4/68 (5%)
Frame = +1
Query: 280 PTLTNCHSASPLCLV----SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAP 447
PT C S LCL +G CD C GR+GP C+L C C GA C P G C C
Sbjct: 456 PTGVPCDPISGLCLCPPGRAGTTCDLDCRRGRFGPGCALRCDCGGGADCDPISGQCHCVD 515
Query: 448 GFRGTTCQ 471
+ G TC+
Sbjct: 516 SYTGPTCR 523
Score = 61.6 bits (148), Expect = 3e-10
Identities = 26/62 (41%), Positives = 30/62 (47%), Gaps = 4/62 (6%)
Frame = +1
Query: 295 CHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGT 462
CH AS C+ + G C C GR+GP C C C NG +C P G C C GF G
Sbjct: 203 CHPASGACVCAAGYHGTDCQQRCPSGRYGPGCEQICKCLNGGTCDPATGACYCPAGFLGA 262
Query: 463 TC 468
C
Sbjct: 263 DC 264
Score = 59.3 bits (142), Expect = 1e-09
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +1
Query: 295 CHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGT 462
CH + CL G HC+ C G +G C+ C+C GASC G C C PGF G
Sbjct: 116 CHHVTGACLCPPGWRGSHCEQACPRGWFGEACAQRCHCPPGASCHHVSGECHCPPGFTGP 175
Query: 463 TCQRS 477
C+++
Sbjct: 176 GCEQA 180
Score = 57.4 bits (137), Expect = 5e-09
Identities = 22/49 (44%), Positives = 28/49 (56%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
G C C +GR+GP+C+ C C GA+C P G C C PG G C+R
Sbjct: 261 GADCSLACPQGRFGPSCAHVCTCGQGAACDPVSGTCICPPGKTGGHCER 309
Score = 54.3 bits (129), Expect = 5e-08
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +1
Query: 292 NCHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRG 459
+C S CL G C+ C G G C C C+ GA C P G C C GFRG
Sbjct: 374 SCEPTSGACLCGPGFYGQACEDTCPAGFHGSGCQRVCECQQGAPCDPVSGRCLCPAGFRG 433
Query: 460 TTCQR 474
C+R
Sbjct: 434 QFCER 438
Score = 53.9 bits (128), Expect = 6e-08
Identities = 25/70 (35%), Positives = 33/70 (46%), Gaps = 5/70 (7%)
Frame = +1
Query: 280 PTLTNCHSASPLCLV----SGVHCDSVCAEGRWGPNCSLPCYCKNGA-SCSPDDGICECA 444
P +CH S C +G C+ C G +G +C PC C +C P G C CA
Sbjct: 154 PPGASCHHVSGECHCPPGFTGPGCEQACQPGTFGKDCEHPCQCPGETWACHPASGACVCA 213
Query: 445 PGFRGTTCQR 474
G+ GT CQ+
Sbjct: 214 AGYHGTDCQQ 223
Score = 52.8 bits (125), Expect = 1e-07
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +1
Query: 325 SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQRS 477
+G C S C G +G +C C C+ GA+C G C C PG+RG+ C+++
Sbjct: 87 TGDKCQSPCVSGMFGVHCEEHCACRKGATCHHVTGACLCPPGWRGSHCEQA 137
Score = 52.0 bits (123), Expect = 2e-07
Identities = 22/53 (41%), Positives = 28/53 (52%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQRSKCL 486
G C C G +G NC C C+NG SC P G C C G+ G C+ ++CL
Sbjct: 2 GPTCLQACPAGLYGKNCQHSCLCRNGGSCDPILGQCTCPEGWTGLACE-NECL 53
Score = 51.2 bits (121), Expect = 4e-07
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +1
Query: 295 CHSASPLCLV----SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGT 462
C S C+ +G HC+ C + R+G C C C+NG C +G C C G+ G
Sbjct: 289 CDPVSGTCICPPGKTGGHCERGCPQDRFGKGCEHKCACRNGGLCHATNGSCSCPLGWMGP 348
Query: 463 TCQRS 477
C+ +
Sbjct: 349 HCEHA 353
Score = 48.9 bits (115), Expect = 2e-06
Identities = 21/54 (38%), Positives = 28/54 (50%)
Frame = +1
Query: 325 SGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQRSKCL 486
+G+ C++ C G G C L C C NG +C G C C G+ G CQ S C+
Sbjct: 44 TGLACENECLPGHHGAGCRLNCSCLNGGTCDRLTGHCRCPAGWTGDKCQ-SPCV 96
Score = 47.8 bits (112), Expect = 4e-06
Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Frame = +1
Query: 295 CHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGT 462
C S CL G C+ C G +G C C G C P G+C C PG GT
Sbjct: 418 CDPVSGRCLCPAGFRGQFCERGCKPGFFGDGCLQQCNSPTGVPCDPISGLCLCPPGRAGT 477
Query: 463 TC 468
TC
Sbjct: 478 TC 479
>gi|8567412|ref|NP_038718.1| (NM_013690) endothelial-specific
receptor tyrosine kinase [Mus musculus]
Length = 1125
Score = 56.2 bits (134), Expect = 1e-08
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 349 CAEGRWGPNCSLPCY-CKNGASCSPDDGICECAPGFRGTTCQRS 477
C +WGP+CS PC CKN C D G C C PGF G TC+++
Sbjct: 212 CEAQKWGPDCSRPCTTCKNNGVCHEDTGECICPPGFMGRTCEKA 255
Score = 48.5 bits (114), Expect = 3e-06
Identities = 18/49 (36%), Positives = 28/49 (56%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQR 474
G+ C+ C G +GP+C L C+C N C G C C+ G++G C++
Sbjct: 296 GLQCNEACPSGYYGPDCKLRCHCTNEEICDRFQG-CLCSQGWQGLQCEK 343
Score = 39.7 bits (91), Expect = 0.001
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Frame = +1
Query: 295 CHSASPLCLVS----GVHCDSVCAEGRWGPNCSLPCY----CKNGASCSPDDGICECAPG 450
CH + C+ G C+ C +G C C CK+ C PD C CA G
Sbjct: 234 CHEDTGECICPPGFMGRTCEKACEPHTFGRTCKERCSGPEGCKSYVFCLPDPYGCSCATG 293
Query: 451 FRGTTCQRS 477
+RG C +
Sbjct: 294 WRGLQCNEA 302
>gi|6755785|ref|NP_035717.1| (NM_011587) tyrosine kinase receptor 1
[Mus musculus]
Length = 1134
Score = 52.4 bits (124), Expect = 2e-07
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 349 CAEGRWGPNCSLPCY-CKNGASCSPDDGICECAPGFRGTTCQRS 477
C GRWGP C C C +G C DG C C PGF GT C+++
Sbjct: 213 CGAGRWGPGCVKDCPGCLHGGVCHDHDGECVCPPGFTGTRCEQA 256
Score = 49.3 bits (116), Expect = 1e-06
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Frame = +1
Query: 295 CHSASPLCLV----SGVHCDSVCAEGRWGPNCSLPCY----CKNGASCSPDDGICECAPG 450
CH C+ +G C+ C EGR+G +C C C+ C PD C C G
Sbjct: 235 CHDHDGECVCPPGFTGTRCEQACREGRFGQSCQEQCPGTAGCRGLTFCLPDPYGCSCGSG 294
Query: 451 FRGTTCQRS 477
+RG+ CQ +
Sbjct: 295 WRGSQCQEA 303
Score = 48.9 bits (115), Expect = 2e-06
Identities = 24/71 (33%), Positives = 32/71 (44%)
Frame = +1
Query: 265 LAFQMPTLTNCHSASPLCLVSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECA 444
L F +P C S G C CA +G +C L C C+NG +C G C C
Sbjct: 279 LTFCLPDPYGCSCGSGW---RGSQCQEACAPDHFGADCRLQCQCQNGGTCDRFSG-CVCP 334
Query: 445 PGFRGTTCQRS 477
G+ G C++S
Sbjct: 335 SGWHGVHCEKS 345
>gi|20149764|ref|NP_619614.1| (NM_138673) stabilin-2 [Mus musculus]
Length = 2559
Score = 47.4 bits (111), Expect = 6e-06
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCS--PDDGICECAPGFRGTTCQR 474
G C++ AE +GPNCS C C +G S DG CEC +RG C +
Sbjct: 152 GTACENCAAEDVFGPNCSAVCSCVHGVCNSGISGDGTCECLSAYRGPRCDK 202
Score = 40.4 bits (93), Expect = 7e-04
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +1
Query: 325 SGVHCDSVCAEGRWGPNCSLPCYCKNGASCS---PDDGICECAPGFRGTTC 468
+G C++ C EG++G +C C C +G C+ DG C+C G+RG C
Sbjct: 1386 NGTACET-CTEGKYGIHCDQACSCVHG-RCNQGPSGDGSCDCDVGWRGVKC 1434
Score = 37.4 bits (85), Expect = 0.006
Identities = 22/63 (34%), Positives = 30/63 (46%), Gaps = 5/63 (7%)
Frame = +1
Query: 295 CHSASPLCLVSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGI-----CECAPGFRG 459
CH+ +G C+ +C GR+GP+C PC C C D+GI C C G+ G
Sbjct: 1996 CHTG-----FNGTACE-LCLPGRFGPDCQ-PCGCSEHGQC--DEGITGSGQCLCEAGWTG 2046
Query: 460 TTC 468
C
Sbjct: 2047 RFC 2049
Score = 37.0 bits (84), Expect = 0.008
Identities = 19/52 (36%), Positives = 22/52 (41%), Gaps = 11/52 (21%)
Frame = +1
Query: 349 CAEGRWGPNCS-------LPC----YCKNGASCSPDDGICECAPGFRGTTCQ 471
C G WGP+C PC C G + G C C GFRGT C+
Sbjct: 108 CCPGHWGPDCMECPGGARAPCGGRGVCDEGMEGT---GSCSCRAGFRGTACE 156
Score = 34.7 bits (78), Expect = 0.037
Identities = 19/52 (36%), Positives = 22/52 (41%), Gaps = 9/52 (17%)
Frame = +1
Query: 343 SVCAEGRWGPNCSLPCYCKNGASCSPDD---------GICECAPGFRGTTCQ 471
S C G +GP C C K CS + G CEC GF GT C+
Sbjct: 1341 SACCAGFFGPQCQA-CPGKGQNVCSGNGFCLDGVNGTGTCECEQGFNGTACE 1391
Score = 33.1 bits (74), Expect = 0.11
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Frame = +1
Query: 349 CAEGRWGPNCSLPCY------CKNGASCSPD---DGICECAPGFRGTTCQ 471
C +G +GP+C+ PC C C +G C C GF+G+ CQ
Sbjct: 735 CCKGFFGPDCN-PCPGGFMNPCSGNGQCIDGLGGNGTCICEDGFQGSRCQ 783
Score = 30.4 bits (67), Expect = 0.71
Identities = 13/41 (31%), Positives = 17/41 (40%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPG 450
G C R+GP C+ C C +G + D C PG
Sbjct: 779 GSRCQFCSKPNRYGPQCNRTCQCVHGICDNRLDSDGSCLPG 819
Score = 29.3 bits (64), Expect = 1.6
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +1
Query: 328 GVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDD-GICECAPGFR--GTTC 468
GV CDS NC+ C+ PD C+CA GF+ GT C
Sbjct: 1431 GVKCDSEITTD----NCNGTCHTSANCLLDPDGKASCKCAAGFQGNGTVC 1476
Score = 28.9 bits (63), Expect = 2.1
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Frame = +1
Query: 349 CAEGRWGPNCSL-----PCYCKNGASCSPD---DGICECAPGFRGTTCQ 471
C G + P+C C N C G C+C GF GT C+
Sbjct: 1958 CCSGYFMPDCQACPGGPDTPCNNRGMCYDQYKPTGQCQCHTGFNGTACE 2006
Score = 27.7 bits (60), Expect = 4.6
Identities = 19/68 (27%), Positives = 28/68 (40%), Gaps = 7/68 (10%)
Frame = +1
Query: 292 NCHSASPLCLVSGV---HCDSVCAEGRW----GPNCSLPCYCKNGASCSPDDGICECAPG 450
NC + S +C G HC+ C E G CS+ C++ C + +PG
Sbjct: 295 NCPTKSTVCRYDGPGQSHCE--CKEHYRNFVPGVGCSMTDICESKNPCHKNANCSTVSPG 352
Query: 451 FRGTTCQR 474
TCQ+
Sbjct: 353 QTQCTCQK 360
Score = 27.3 bits (59), Expect = 6.0
Identities = 14/34 (41%), Positives = 17/34 (49%), Gaps = 5/34 (14%)
Frame = +1
Query: 373 NCSLPCY--CKNGASC---SPDDGICECAPGFRG 459
+C LP C + A+C P CEC GFRG
Sbjct: 921 SCLLPSSGGCHDNATCLYVGPGQNECECKKGFRG 954
>gi|7305197|ref|NP_038850.1| (NM_013822) jagged 1; headturner [Mus
musculus]
Length = 1218
Score = 46.2 bits (108), Expect = 1e-05
Identities = 31/82 (37%), Positives = 36/82 (43%), Gaps = 17/82 (20%)
Frame = +1
Query: 295 CHSASPLCLVSGVHCDSVCAEGRWGPNCSL--------PCYCKNGASCSPDDGI--CECA 444
CH+ C+V+G VC EG GP C+ PCY N +C D CECA
Sbjct: 753 CHNGGT-CVVNGDSFTCVCKEGWEGPICTQNTNDCSPHPCY--NSGTCVDGDNWYRCECA 809
Query: 445 PGFRG-------TTCQRSKCLF 489
PGF G CQ S C F
Sbjct: 810 PGFAGPDCRININECQSSPCAF 831
Score = 38.1 bits (87), Expect = 0.003
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Frame = +1
Query: 349 CAEGRWGPNCSLPCY------CKNGASCSPDDG--ICECAPGFRGTTC 468
C EG GPNC + + C N SC CEC+PG+ G TC
Sbjct: 324 CPEGYSGPNCEIAEHACLSDPCHNRGSCKETSSGFECECSPGWTGPTC 371
Score = 35.8 bits (81), Expect = 0.017
Identities = 20/59 (33%), Positives = 28/59 (46%), Gaps = 7/59 (11%)
Frame = +1
Query: 319 LVSGVHCDSVCAEGRWGPNCSLPC-----YCKNGASCSP--DDGICECAPGFRGTTCQR 474
L++ +CD C G G NC + C+N ASC + C C PG+ G C+R
Sbjct: 430 LIASYYCD--CLPGWMGQNCDININDCLGQCQNDASCRDLVNGYRCICPPGYAGDHCER 486
Score = 34.7 bits (78), Expect = 0.037
Identities = 25/81 (30%), Positives = 31/81 (37%), Gaps = 21/81 (25%)
Frame = +1
Query: 292 NCHSASPLCLV-------------SGVHCDSVCAEGRWGPNCSL------PCYCKNGASC 414
NC A CL SG C+ C+ G GP CS P C +G +C
Sbjct: 332 NCEIAEHACLSDPCHNRGSCKETSSGFECE--CSPGWTGPTCSTNIDDCSPNNCSHGGTC 389
Query: 415 SP--DDGICECAPGFRGTTCQ 471
+ C C P + G TCQ
Sbjct: 390 QDLVNGFKCVCPPQWTGKTCQ 410
Score = 33.1 bits (74), Expect = 0.11
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Frame = +1
Query: 319 LVSGVHCDSVCAEGRWGPNCSL------PCYCKNGASC--SPDDGICECAPGFRGTTC-- 468
LV+ +CD C G G C C NG +C D C C G+ GTTC
Sbjct: 685 LVNDFYCD--CKNGWKGKTCHSRDSQCDEATCNNGGTCYDEVDTFKCMCPGGWEGTTCNI 742
Query: 469 -QRSKCL 486
+ S CL
Sbjct: 743 ARNSSCL 749
Score = 29.6 bits (65), Expect = 1.2
Identities = 23/68 (33%), Positives = 28/68 (40%), Gaps = 10/68 (14%)
Frame = +1
Query: 298 HSASPLCLVSGVHCDSVCAEGRWGPNC--------SLPCYCKNGASCSPDDGI--CECAP 447
+ AS LV+G C +C G G +C S PC NG C + C C
Sbjct: 460 NDASCRDLVNGYRC--ICPPGYAGDHCERDIDECASNPCL--NGGHCQNEINRFQCLCPT 515
Query: 448 GFRGTTCQ 471
GF G CQ
Sbjct: 516 GFSGNLCQ 523
Score = 28.5 bits (62), Expect = 2.7
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 9/53 (16%)
Frame = +1
Query: 346 VCAEGRWGPNCS-------LPCYCKNGASC--SPDDGICECAPGFRGTTCQRS 477
+C G G C+ LP C NG +C + D C C G+ G C ++
Sbjct: 730 MCPGGWEGTTCNIARNSSCLPNPCHNGGTCVVNGDSFTCVCKEGWEGPICTQN 782
Score = 27.7 bits (60), Expect = 4.6
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Frame = +1
Query: 346 VCAEGRWGPNCSLPCY------CKNGASCSP--DDGICECAPGFRGTTC 468
+C++G G +C C G +C +D C+C G++G TC
Sbjct: 654 ICSDGWEGAHCENNINDCSQNPCHYGGTCRDLVNDFYCDCKNGWKGKTC 702
>gi|30794508|ref|NP_038824.1| (NM_013796)
N-acetylglucosamine-1-phosphodiester
alpha-N-acetylglucosaminidase; alpha-GlcNAcase [Mus
musculus]
Length = 517
Score = 46.2 bits (108), Expect = 1e-05
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Frame = +1
Query: 289 TNCHSASPLCLVSGVHCD-----SVCAE----GRWGPNCSLPCYCKNGASCSPDDGIC 435
+NC S LC +G HCD S C+E G +GP C PC C++ SC P G C
Sbjct: 366 SNC-SQHGLCTETGCHCDAGWTGSNCSEECPLGWYGPGCQRPCQCEHQCSCDPQTGNC 422
>gi|33859490|ref|NP_032508.1| (NM_008482) laminin B1 subunit 1 [Mus
musculus]
Length = 1834
Score = 45.8 bits (107), Expect = 2e-05
Identities = 30/80 (37%), Positives = 36/80 (44%), Gaps = 12/80 (15%)
Frame = +1
Query: 292 NCHSASPLCL----VSGVHCDSVCAEGRW----GPNCSLPCYCKN----GASCSPDDGIC 435
+C A+ C V G +CD CA W G C PC C G SC+ G C
Sbjct: 1094 HCDKATGQCSCLPNVIGQNCDR-CAPNTWQLASGTGCG-PCNCNAAHSFGPSCNEFTGQC 1151
Query: 436 ECAPGFRGTTCQRSKCLFRG 495
+C PGF G TC + LF G
Sbjct: 1152 QCMPGFGGRTCSECQELFWG 1171
Score = 39.7 bits (91), Expect = 0.001
Identities = 26/70 (37%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Frame = +1
Query: 295 CHSASPLC----LVSGVHCDSVCAEGRWGPNCSL----PCYCKNGA----SCSPDDGICE 438
C S + C LV+G CD C WG + L PC C G SCS D G C
Sbjct: 520 CDSETGYCYCKRLVTGQRCDQ-CLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCS 578
Query: 439 CAPGFRGTTC 468
C P G C
Sbjct: 579 CLPHMIGRQC 588
Score = 30.8 bits (68), Expect = 0.54
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Frame = +1
Query: 382 LPCYCKNGAS----CSPDDGICECAPGFRGTTCQR 474
L C C S C P+ G C+C P G TC R
Sbjct: 819 LACECDPQGSLSSVCDPNGGQCQCRPNVVGRTCNR 853
Score = 27.7 bits (60), Expect = 4.6
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = +1
Query: 337 CDSVCAEGRWG-PNCSLPCYCKNGA-SCSPDDGIC-ECAPGFRGTTCQR 474
CD C G WG P+C PC C A C G C C G C+R
Sbjct: 899 CDR-CLPGYWGFPSC-QPCQCNGHALDCDTVTGECLSCQDYTTGHNCER 945
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Sep 13, 2003 12:13 AM
Number of letters in database: 7,609,334
Number of sequences in database: 16,274
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,378,568
Number of Sequences: 16274
Number of extensions: 322394
Number of successful extensions: 1602
Number of sequences better than 10.0: 136
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1526
length of database: 7,609,334
effective HSP length: 94
effective length of database: 6,079,578
effective search space used: 911936700
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)