Search to RefSeq (Human) database
Query= 20030826S-018815 (20030826S-018815) 20030826S-018815
(366 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,804 sequences; 10,428,096 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4507651|ref|NP_003281.1| (NM_003290) tropomyosin 4 [Homo sapi... 59 8e-10
Alignment gi|24119203|ref|NP_705935.1| (NM_153649) tropomyosin 3 [Homo sap... 38 0.001
Alignment gi|13435161|ref|NP_079489.1| (NM_025213) spectrin, beta, non-ery... 33 0.037
Alignment gi|12383080|ref|NP_073745.1| (NM_022834) hypothetical protein FL... 30 0.31
Alignment gi|22749045|ref|NP_689715.1| (NM_152502) hypothetical protein FL... 30 0.31
Alignment gi|14249158|ref|NP_116020.1| (NM_032631) hepatoma-derived growth... 29 0.69
Alignment gi|28875784|ref|NP_079018.1| (NM_024742) hypothetical protein FL... 29 0.69
Alignment gi|33186910|ref|NP_874365.1| (NM_182706) scribble isoform N1 [Ho... 28 0.90
Alignment gi|27735151|ref|NP_775957.1| (NM_173686) hypothetical protein FL... 28 0.90
Alignment gi|18141297|ref|NP_056171.1| (NM_015356) scribble [Homo sapiens] 28 0.90
>gi|4507651|ref|NP_003281.1| (NM_003290) tropomyosin 4 [Homo
sapiens]
Length = 248
Score = 58.5 bits (140), Expect = 8e-10
Identities = 34/62 (54%), Positives = 37/62 (58%)
Frame = +3
Query: 126 MAGLNSLEAVRRKIXXXXXXXXXXXXXXHGLQWELDGDRERWEKAEGDVPTFIGCILLVV 305
MAGLNSLEAV+RKI GLQ ELDG+RER EKAEGDV I LV
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 306 ED 311
E+
Sbjct: 61 EE 62
>gi|24119203|ref|NP_705935.1| (NM_153649) tropomyosin 3 [Homo
sapiens]
Length = 248
Score = 38.1 bits (87), Expect = 0.001
Identities = 22/62 (35%), Positives = 33/62 (52%)
Frame = +3
Query: 126 MAGLNSLEAVRRKIXXXXXXXXXXXXXXHGLQWELDGDRERWEKAEGDVPTFIGCILLVV 305
MAG+ ++EAV+RKI LQ E++G+R E+AE +V + I LV
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 306 ED 311
E+
Sbjct: 61 EE 62
>gi|13435161|ref|NP_079489.1| (NM_025213) spectrin, beta,
non-erythrocytic 4; spectrin beta 4 [Homo sapiens]
Length = 2559
Score = 33.1 bits (74), Expect = 0.037
Identities = 18/40 (45%), Positives = 19/40 (47%)
Frame = -3
Query: 136 RPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPT 17
RP RR R G GG S R S + APAP P PT
Sbjct: 2372 RPKPRRRPRPREGGEGGGSRRSRSAPAQGGSAPAPPPPPT 2411
>gi|12383080|ref|NP_073745.1| (NM_022834) hypothetical protein
FLJ22215 [Homo sapiens]
Length = 233
Score = 30.0 bits (66), Expect = 0.31
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -3
Query: 154 TASRELRPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPTP 14
T + L P A T AA GR + L S K+C+ P P P P P
Sbjct: 176 TTLQGLAPGTAYLVTVTAAFRSGRESAL-SAKACTPDGPRPRPRPVP 221
>gi|22749045|ref|NP_689715.1| (NM_152502) hypothetical protein
FLJ32154 [Homo sapiens]
Length = 144
Score = 30.0 bits (66), Expect = 0.31
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = -3
Query: 148 SRELRPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPTPGGR 5
+R+ RP R G G S C + + P LP PGGR
Sbjct: 7 TRQQRPPQGTEAGTRGGGPGRLSPERCRLLDSALQLQGPASLPQPGGR 54
>gi|14249158|ref|NP_116020.1| (NM_032631) hepatoma-derived growth
factor-related protein 2 [Homo sapiens]
Length = 670
Score = 28.9 bits (63), Expect = 0.69
Identities = 15/42 (35%), Positives = 21/42 (49%)
Frame = -3
Query: 130 AMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPTPGGR 5
AMAR + ++ S + + K R PA +PLP P GR
Sbjct: 249 AMARSASSSSSSSSSSDSDVSVKKPPRGRKPAEKPLPKPRGR 290
>gi|28875784|ref|NP_079018.1| (NM_024742) hypothetical protein
FLJ13063 [Homo sapiens]
Length = 725
Score = 28.9 bits (63), Expect = 0.69
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = -3
Query: 166 ILRLTASRELRPAMARRRTQRAAGS-----GGRSARLCSCKSCSSRAPAPEPLPT 17
I R A LRP +A R AAGS G SA + SS APA P P+
Sbjct: 58 IERFRARGGLRPLLALLRRAAAAGSAPSQAGPGSAPSSAASGASSPAPASGPAPS 112
>gi|33186910|ref|NP_874365.1| (NM_182706) scribble isoform N1 [Homo
sapiens]
Length = 1601
Score = 28.5 bits (62), Expect = 0.90
Identities = 17/42 (40%), Positives = 19/42 (44%)
Frame = -3
Query: 139 LRPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPTP 14
LR M R+Q G+ G RL S PAP P PTP
Sbjct: 1485 LRAQMVLSRSQEGRGTRGPLERLAEAPS-----PAPTPSPTP 1521
>gi|27735151|ref|NP_775957.1| (NM_173686) hypothetical protein
FLJ34715 [Homo sapiens]
Length = 285
Score = 28.5 bits (62), Expect = 0.90
Identities = 19/53 (35%), Positives = 22/53 (40%)
Frame = -3
Query: 163 LRLTASRELRPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPTPGGR 5
L L L+ + R QR G G S+RAP P PL TPG R
Sbjct: 125 LVLEQMARLQQLYLQLRIQRPPGDPGEEE--------STRAPLPSPLHTPGNR 169
>gi|18141297|ref|NP_056171.1| (NM_015356) scribble [Homo sapiens]
Length = 1630
Score = 28.5 bits (62), Expect = 0.90
Identities = 17/42 (40%), Positives = 19/42 (44%)
Frame = -3
Query: 139 LRPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPTP 14
LR M R+Q G+ G RL S PAP P PTP
Sbjct: 1514 LRAQMVLSRSQEGRGTRGPLERLAEAPS-----PAPTPSPTP 1550
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Sep 13, 2003 12:13 AM
Number of letters in database: 10,428,096
Number of sequences in database: 19,804
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,810,409
Number of Sequences: 19804
Number of extensions: 141107
Number of successful extensions: 1013
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 10,428,096
effective HSP length: 86
effective length of database: 8,724,952
effective search space used: 305373320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20030826S-018815 (20030826S-018815) 20030826S-018815
(366 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
16,274 sequences; 7,609,334 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|30794220|ref|NP_115999.1| (NM_032610) spectrin beta 4; beta-s... 33 0.028
Alignment gi|31982705|ref|NP_064368.2| (NM_019984) transglutaminase 1, K p... 32 0.080
Alignment gi|22122755|ref|NP_666317.1| (NM_146205) cDNA sequence BC032200 ... 29 0.52
Alignment gi|22003864|ref|NP_665823.1| (NM_145824) RIKEN cDNA 4432417N03 [... 28 1.2
Alignment gi|7305475|ref|NP_038690.1| (NM_013662) sema domain, transmembra... 28 1.2
Alignment gi|19387842|ref|NP_076395.1| (NM_023906) ankyrin repeat and SOCS... 28 1.2
Alignment gi|21553305|ref|NP_083686.1| (NM_029410) RIKEN cDNA 5430429M05 [... 28 1.2
Alignment gi|6753124|ref|NP_033841.1| (NM_009711) artemin [Mus musculus] 27 1.5
Alignment gi|16716581|ref|NP_444482.1| (NM_053252) tangerin [Mus musculus] 27 2.0
Alignment gi|20373163|ref|NP_598850.1| (NM_134089) PDZ-domain protein scri... 27 2.0
>gi|30794220|ref|NP_115999.1| (NM_032610) spectrin beta 4;
beta-spectrin 4; quivering; lumbosacral neuroaxonal
dystrophy; neuroaxonal dystrophy [Mus musculus]
Length = 2561
Score = 33.1 bits (74), Expect = 0.028
Identities = 18/40 (45%), Positives = 19/40 (47%)
Frame = -3
Query: 136 RPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPT 17
RP RR R G GG S R S + APAP P PT
Sbjct: 2374 RPKPRRRPRPREGGEGGGSRRSRSAPAQGGSAPAPPPPPT 2413
>gi|31982705|ref|NP_064368.2| (NM_019984) transglutaminase 1, K
polypeptide;
protein-glutamine-gamma-glutamyltransferase;
transglutaminase type 1; TG K; TGase 1; K polypeptide
[Mus musculus]
Length = 815
Score = 31.6 bits (70), Expect = 0.080
Identities = 21/53 (39%), Positives = 23/53 (42%), Gaps = 5/53 (9%)
Frame = -3
Query: 169 WILRLTASRELRPAMARRRTQRAAGSGGRS--ARLCSCKSCSSRAP---APEP 26
W T S E P R R+ GGRS AR C C SC +R PEP
Sbjct: 16 WQPPTTPSPEPEPEPEPDRRSRSRRGGGRSFWARCCGCCSCGNRGDDDWGPEP 68
>gi|22122755|ref|NP_666317.1| (NM_146205) cDNA sequence BC032200
[Mus musculus]
Length = 926
Score = 28.9 bits (63), Expect = 0.52
Identities = 22/58 (37%), Positives = 25/58 (42%), Gaps = 7/58 (12%)
Frame = -3
Query: 166 ILRLTASRELRPAMARRRTQRAAG-------SGGRSARLCSCKSCSSRAPAPEPLPTP 14
I R A LRP +A R AAG SG + + S S APA E L TP
Sbjct: 58 IERFRARGGLRPLLALLRRTAAAGPAPSQAASGSAPSSVASAGSTPGHAPAAESLLTP 115
>gi|22003864|ref|NP_665823.1| (NM_145824) RIKEN cDNA 4432417N03 [Mus
musculus]
Length = 503
Score = 27.7 bits (60), Expect = 1.2
Identities = 15/39 (38%), Positives = 22/39 (55%), Gaps = 5/39 (12%)
Frame = +3
Query: 57 LLQEQSRAERPPL-----PAARCVRLRAMAGLNSLEAVR 158
+L+ Q+ ++PPL A+ C+RL A AGL S R
Sbjct: 459 ILESQNLPKQPPLMLALGQASECLRLMARAGLGSCSFAR 497
>gi|7305475|ref|NP_038690.1| (NM_013662) sema domain, transmembrane
domain (TM), and cytoplasmic domain, (semaphorin) 6B
[Mus musculus]
Length = 886
Score = 27.7 bits (60), Expect = 1.2
Identities = 19/46 (41%), Positives = 23/46 (49%)
Frame = -3
Query: 139 LRPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPTPGGRP 2
L PA A + Q A G S RLC+ +SC + P PL TP P
Sbjct: 754 LAPARASEQPQVPAEPGPES-RLCAPRSCRASHPGDFPL-TPHASP 797
>gi|19387842|ref|NP_076395.1| (NM_023906) ankyrin repeat and SOCS
box-containing protein 3; ankyrin repeat-containing SOCS
box protein 3 [Mus musculus]
Length = 525
Score = 27.7 bits (60), Expect = 1.2
Identities = 15/41 (36%), Positives = 21/41 (50%)
Frame = -2
Query: 350 SRTLNGRAWRCVEVLHDK*YAPNESWHIPFGFLPPLAIAVQ 228
S GR C+E+L Y+P+ + FGF PL +A Q
Sbjct: 286 SAVFGGRE-ECLEMLLQNGYSPDAQMCLVFGFSSPLCMAFQ 325
>gi|21553305|ref|NP_083686.1| (NM_029410) RIKEN cDNA 5430429M05 [Mus
musculus]
Length = 255
Score = 27.7 bits (60), Expect = 1.2
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 133 PAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEP-LPTPGGRP 2
PA+ R+ + +AGS R L S + SS P LP PG P
Sbjct: 148 PALHRKLARLSAGSFARLVELFSSRESSSSPNCSSPSLPCPGPPP 192
>gi|6753124|ref|NP_033841.1| (NM_009711) artemin [Mus musculus]
Length = 224
Score = 27.3 bits (59), Expect = 1.5
Identities = 11/28 (39%), Positives = 16/28 (56%)
Frame = -3
Query: 91 GGRSARLCSCKSCSSRAPAPEPLPTPGG 8
GG +A LCS ++ +P+P P P G
Sbjct: 67 GGHTAHLCSERTLRPPPQSPQPAPPPPG 94
>gi|16716581|ref|NP_444482.1| (NM_053252) tangerin [Mus musculus]
Length = 1716
Score = 26.9 bits (58), Expect = 2.0
Identities = 18/52 (34%), Positives = 26/52 (49%), Gaps = 1/52 (1%)
Frame = +3
Query: 6 RPPGVGKGSGAGARLLQLLQ-EQSRAERPPLPAARCVRLRAMAGLNSLEAVR 158
R PGV K GAG + ++L+ E + +E P A L+A S A+R
Sbjct: 842 RAPGVQKALGAGTEVARVLEAEAASSEVPETDAEEAETLQAKERSESSVALR 893
>gi|20373163|ref|NP_598850.1| (NM_134089) PDZ-domain protein scribble;
Scribble [Mus musculus]
Length = 1665
Score = 26.9 bits (58), Expect = 2.0
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = -3
Query: 139 LRPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPLPTP 14
LR M ++Q G G RL S PAP P PTP
Sbjct: 1524 LRAQMVLSKSQEGRGKRGPLERLAEAPS-----PAPTPSPTP 1560
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Sep 13, 2003 12:13 AM
Number of letters in database: 7,609,334
Number of sequences in database: 16,274
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,855,777
Number of Sequences: 16274
Number of extensions: 97850
Number of successful extensions: 610
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 7,609,334
effective HSP length: 84
effective length of database: 6,242,318
effective search space used: 230965766
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)