Search to RefSeq (Human) database
Query= 20040204C-000261 (20040204C-000261) 20040204C-000261
(1200 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
27,437 sequences; 13,743,509 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens] 290 1e-78
Alignment gi|41144304|ref|XP_208313.3| similar to tropomyosin 4 [Homo sapi... 251 5e-67
Alignment gi|41148724|ref|XP_372046.1| similar to tropomyosin 4 [Homo sapi... 229 2e-60
Alignment gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens] 205 4e-53
Alignment gi|42476296|ref|NP_003280.2| tropomyosin 2 (beta); arthrogryposi... 185 6e-47
Alignment gi|22748619|ref|NP_689476.1| tropomyosin 3 [Homo sapiens] 173 2e-43
Alignment gi|27597085|ref|NP_000357.3| tropomyosin 1 (alpha) [Homo sapiens] 160 2e-39
Alignment gi|42658367|ref|XP_379997.1| similar to tropomyosin 3 [Homo sapi... 112 7e-25
Alignment gi|37538455|ref|XP_167254.3| similar to tropomyosin 3 [Homo sapi... 112 7e-25
Alignment gi|45439327|ref|NP_002696.3| periplakin; 195 kDa cornified envel... 41 0.002
>gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens]
Length = 248
Score = 290 bits (742), Expect = 1e-78
Identities = 163/248 (65%), Positives = 163/248 (65%)
Frame = +3
Query: 249 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 428
MAGLNSLEAVKRKI GLQRELDGERERREKAEGDVAALNRRIQLVE
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 429 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 608
EELDRAQER RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 120
Query: 609 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 788
EADRKYEEVARKLVI VSELKCGDLEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 789 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 968
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 969 TLNELNCI 992
TLNELNCI
Sbjct: 241 TLNELNCI 248
>gi|41144304|ref|XP_208313.3| similar to tropomyosin 4 [Homo
sapiens]
Length = 292
Score = 251 bits (642), Expect = 5e-67
Identities = 141/219 (64%), Positives = 144/219 (65%)
Frame = +3
Query: 336 GLQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXR 515
GLQREL GE ERREKA+GDVAALNRRIQLVEE+LDRAQER R
Sbjct: 74 GLQRELGGECERREKAKGDVAALNRRIQLVEEKLDRAQERLATAPQKLEEAEKAADESER 133
Query: 516 GMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXV 695
GMKVIENRAMKDEEKMEIQE+QLKEAKHIAEEADRKY EVARKLV V
Sbjct: 134 GMKVIENRAMKDEEKMEIQELQLKEAKHIAEEADRKYWEVARKLVFLEGELERAEERVEV 193
Query: 696 SELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXX 875
SELKCGDLEEELKNVTNNL DKLK
Sbjct: 194 SELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKCEEEIKLLCDKLKEAETRAEFAERT 253
Query: 876 XXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 992
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 254 VAKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 292
>gi|41148724|ref|XP_372046.1| similar to tropomyosin 4 [Homo
sapiens]
Length = 215
Score = 229 bits (585), Expect = 2e-60
Identities = 133/219 (60%), Positives = 137/219 (62%)
Frame = +3
Query: 336 GLQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXR 515
GLQRELDG+RE REKAEGDVA LNRRIQLVEEELDRAQER R
Sbjct: 19 GLQRELDGKREWREKAEGDVATLNRRIQLVEEELDRAQERLATALQKLEEAEKVADESER 78
Query: 516 GMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXV 695
GMKVIENRAMKDEEKMEIQEMQLKEAKHIAE+ADRKYE+VARKLVI
Sbjct: 79 GMKVIENRAMKDEEKMEIQEMQLKEAKHIAEKADRKYEKVARKLVIL------------- 125
Query: 696 SELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXX 875
EELKNVTNNL SDK+K
Sbjct: 126 ---------EELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKVKEAETRAEFAERT 176
Query: 876 XXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 992
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 177 VAKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 215
>gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens]
Length = 248
Score = 205 bits (522), Expect = 4e-53
Identities = 116/246 (47%), Positives = 143/246 (58%)
Frame = +3
Query: 249 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 428
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 429 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 608
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 609 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 788
EADRKYEEVARKLVI ++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 789 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 968
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 969 TLNELN 986
TL +LN
Sbjct: 241 TLLDLN 246
>gi|42476296|ref|NP_003280.2| tropomyosin 2 (beta); arthrogryposis
multiplex congenital, distal, type 1 [Homo sapiens]
Length = 284
Score = 185 bits (469), Expect = 6e-47
Identities = 106/241 (43%), Positives = 130/241 (53%)
Frame = +3
Query: 270 EAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQ 449
+A+++K+ Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQ
Sbjct: 44 QALQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQ 103
Query: 450 ERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYE 629
ER RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYE
Sbjct: 104 ERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYE 163
Query: 630 EVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXX 809
EVARKLVI V+E KCGDLEEELK VTNNL
Sbjct: 164 EVARKLVILEGELERSEERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEE 223
Query: 810 XXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNC 989
+KLK KLEKTIDDLE+++ K + + + LD LN++
Sbjct: 224 EIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITS 283
Query: 990 I 992
+
Sbjct: 284 L 284
>gi|22748619|ref|NP_689476.1| tropomyosin 3 [Homo sapiens]
Length = 243
Score = 173 bits (438), Expect = 2e-43
Identities = 99/242 (40%), Positives = 128/242 (52%)
Frame = +3
Query: 267 LEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRA 446
+EA+K+K+ + E ER ++ E ++AA+ ++++ E+ELDRA
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDRA 61
Query: 447 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 626
QER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKY
Sbjct: 62 QERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKY 121
Query: 627 EEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXX 806
EEVARKLVI ++E KC +LEEELKNVTNNL
Sbjct: 122 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 181
Query: 807 XXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 986
+DKLK KLEKTIDDLE++L K + + + LD LN++
Sbjct: 182 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMT 241
Query: 987 CI 992
I
Sbjct: 242 SI 243
>gi|27597085|ref|NP_000357.3| tropomyosin 1 (alpha) [Homo sapiens]
Length = 284
Score = 160 bits (405), Expect = 2e-39
Identities = 97/241 (40%), Positives = 124/241 (51%)
Frame = +3
Query: 261 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 440
+ L ++++K+ Q +L+ ++ AE DVA+LNRRIQLVEEELD
Sbjct: 41 DELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELD 100
Query: 441 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADR 620
RAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADR
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Query: 621 KYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXX 800
KYEEVARKLVI +SE + LEE+L+ + L
Sbjct: 161 KYEEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDR 220
Query: 801 XXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 980
SDKLK KLEK+IDDLE++L K + + + LD LN+
Sbjct: 221 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALND 280
Query: 981 L 983
+
Sbjct: 281 M 281
>gi|42658367|ref|XP_379997.1| similar to tropomyosin 3 [Homo
sapiens]
Length = 210
Score = 112 bits (279), Expect = 7e-25
Identities = 84/246 (34%), Positives = 106/246 (43%)
Frame = +3
Query: 249 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 428
MAG+ ++E VK KI LQ++ D ER E+ + E
Sbjct: 1 MAGIATMEEVKCKIQV--------------LQQQADDAEERAERLQ------------FE 34
Query: 429 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 608
EELD AQER R MK ME+QE+QLKEAKHIAE
Sbjct: 35 EELDHAQERLTTALQKLEEEEKAADESERDMK------------MELQEIQLKEAKHIAE 82
Query: 609 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 788
EADRKYEEV RKLVI ++E +C + +E+++ + NL
Sbjct: 83 EADRKYEEVPRKLVIIEGDLECTEERAELAESRCQETDEQIRLMDQNLKCLSDAEEKYSQ 142
Query: 789 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 968
+DKLK KLEKT DDLE KL KEEN+ + L Q
Sbjct: 143 KEDIYEEEIKILTDKLKEAETRAEFTERLVAKLEKTTDDLEYKLKCNKEENLCTQRMLYQ 202
Query: 969 TLNELN 986
TL +LN
Sbjct: 203 TLLDLN 208
>gi|37538455|ref|XP_167254.3| similar to tropomyosin 3 [Homo
sapiens]
Length = 210
Score = 112 bits (279), Expect = 7e-25
Identities = 84/246 (34%), Positives = 106/246 (43%)
Frame = +3
Query: 249 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 428
MAG+ ++E VK KI LQ++ D ER E+ + E
Sbjct: 1 MAGIATMEEVKCKIQV--------------LQQQADDAEERAERLQ------------FE 34
Query: 429 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 608
EELD AQER R MK ME+QE+QLKEAKHIAE
Sbjct: 35 EELDHAQERLTTALQKLEEEEKAADESERDMK------------MELQEIQLKEAKHIAE 82
Query: 609 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 788
EADRKYEEV RKLVI ++E +C + +E+++ + NL
Sbjct: 83 EADRKYEEVPRKLVIIEGDLECTEERAELAESRCQETDEQIRLMDQNLKCLSDAEEKYSQ 142
Query: 789 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 968
+DKLK KLEKT DDLE KL KEEN+ + L Q
Sbjct: 143 KEDIYEEEIKILTDKLKEAETRAEFTERLVAKLEKTTDDLEYKLKCNKEENLCTQRMLYQ 202
Query: 969 TLNELN 986
TL +LN
Sbjct: 203 TLLDLN 208
>gi|45439327|ref|NP_002696.3| periplakin; 195 kDa cornified envelope
precursor; 190 kDa paraneoplastic pemphigus antigen [Homo
sapiens]
Length = 1756
Score = 40.8 bits (94), Expect = 0.002
Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 4/193 (2%)
Frame = +3
Query: 186 QEQSRAERPPLPAARCVRLRAMAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQR---ELD 356
QE R E P +R A A S++ R+I L+R EL+
Sbjct: 1353 QEVVRYEEEP-----GLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLEELE 1407
Query: 357 GERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIEN 536
ER+ R +AE +V L +R+ +E+E A+E+ KV+
Sbjct: 1408 RERQARREAEREVQRLQQRLAALEQEEAEAREKVTHT-----------------QKVVLQ 1450
Query: 537 RAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVS-ELKCG 713
+ + + + +QL+E +H + + + E + RKL S +++ G
Sbjct: 1451 QDPQQAREHALLRLQLEEEQHRRQLLEGELETLRRKLAALEKAEVKEKVVLSESVQVEKG 1510
Query: 714 DLEEELKNVTNNL 752
D E+E++ + ++L
Sbjct: 1511 DTEQEIQRLKSSL 1523
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Apr 12, 2004 5:34 AM
Number of letters in database: 13,743,509
Number of sequences in database: 27,437
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 13,743,509
effective HSP length: 103
effective length of database: 10,917,498
effective search space used: 3231579408
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20040204C-000261 (20040204C-000261) 20040204C-000261
(1200 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,199 sequences; 11,906,519 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|20864610|ref|XP_134274.1| similar to tropomyosin 4 [Mus muscu... 280 9e-76
Alignment gi|31560030|ref|NP_077745.2| tropomyosin 1, alpha; alpha tropomy... 203 2e-52
Alignment gi|11875203|ref|NP_033442.2| tropomyosin 2, beta [Mus musculus] 185 4e-47
Alignment gi|40254525|ref|NP_071709.2| tropomyosin 3, gamma; skalphaTM.2; ... 175 4e-44
Alignment gi|38094010|ref|XP_143011.2| similar to tropomyosin [Mus musculus] 146 3e-35
Alignment gi|38086740|ref|XP_145641.2| similar to High mobility group prot... 97 2e-20
Alignment gi|38083544|ref|XP_355057.1| similar to tropomyosin isoform 6 [M... 55 6e-08
Alignment gi|22218336|ref|NP_032935.1| periplakin; 195-kD protein; 195kDa ... 38 0.013
Alignment gi|38089798|ref|XP_196478.3| hypothetical protein XP_196478 [Mus... 33 0.25
Alignment gi|30794220|ref|NP_115999.1| spectrin beta 4; beta-spectrin 4; q... 33 0.43
>gi|20864610|ref|XP_134274.1| similar to tropomyosin 4 [Mus
musculus]
Length = 248
Score = 280 bits (717), Expect = 9e-76
Identities = 157/248 (63%), Positives = 160/248 (64%)
Frame = +3
Query: 249 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 428
MAGLNSLEAVKRKI GLQRELDGERERREKAEGD AALNRRIQL+E
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLE 60
Query: 429 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 608
EELDRAQE+ RGMKVIENRAMKDEEKMEI EMQLKEAKHI +
Sbjct: 61 EELDRAQEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKMEILEMQLKEAKHITD 120
Query: 609 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 788
EADRKYEEVARKLVI VSELKCGDLEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVILEGELKRAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 789 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 968
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 969 TLNELNCI 992
TLNELNCI
Sbjct: 241 TLNELNCI 248
>gi|31560030|ref|NP_077745.2| tropomyosin 1, alpha; alpha
tropomyosin [Mus musculus]
Length = 284
Score = 203 bits (516), Expect = 2e-52
Identities = 117/242 (48%), Positives = 137/242 (56%)
Frame = +3
Query: 261 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 440
+ L ++++K+ Q +L+ ++ AE DVA+LNRRIQLVEEELD
Sbjct: 41 DELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELD 100
Query: 441 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADR 620
RAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADR
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Query: 621 KYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXX 800
KYEEVARKLVI +SE KC +LEEELK VTNNL
Sbjct: 161 KYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDK 220
Query: 801 XXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 980
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL E
Sbjct: 221 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLE 280
Query: 981 LN 986
LN
Sbjct: 281 LN 282
>gi|11875203|ref|NP_033442.2| tropomyosin 2, beta [Mus musculus]
Length = 284
Score = 185 bits (470), Expect = 4e-47
Identities = 106/241 (43%), Positives = 130/241 (53%)
Frame = +3
Query: 270 EAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQ 449
+A+++K+ Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQ
Sbjct: 44 QALQKKLKGTEDEVEKYSESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQ 103
Query: 450 ERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYE 629
ER RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYE
Sbjct: 104 ERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYE 163
Query: 630 EVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXX 809
EVARKLVI V+E KCGDLEEELK VTNNL
Sbjct: 164 EVARKLVILEGELERSEERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEE 223
Query: 810 XXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNC 989
+KLK KLEKTIDDLE+++ K + + + LD LN++
Sbjct: 224 EIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITS 283
Query: 990 I 992
+
Sbjct: 284 L 284
>gi|40254525|ref|NP_071709.2| tropomyosin 3, gamma; skalphaTM.2;
tropomyosin 5 [Mus musculus]
Length = 284
Score = 175 bits (444), Expect = 4e-44
Identities = 101/242 (41%), Positives = 131/242 (54%)
Frame = +3
Query: 261 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 440
+ L +++K+ Q +L+ ++ AE +VA+LNRRIQLVEEELD
Sbjct: 41 DELATMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELD 100
Query: 441 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADR 620
RAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADR
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 160
Query: 621 KYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXX 800
KYEEVARKLVI ++E +C +++E+++ + NL
Sbjct: 161 KYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDK 220
Query: 801 XXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 980
+DKLK KLEKTIDDLE+KL KEE++ + LDQTL +
Sbjct: 221 YEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLD 280
Query: 981 LN 986
LN
Sbjct: 281 LN 282
>gi|38094010|ref|XP_143011.2| similar to tropomyosin [Mus musculus]
Length = 275
Score = 146 bits (368), Expect = 3e-35
Identities = 100/266 (37%), Positives = 127/266 (47%), Gaps = 5/266 (1%)
Frame = +3
Query: 249 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 428
MAG +++AVK I L++EL+GER+ E+AE +VA+LN RIQ VE
Sbjct: 1 MAGSTTIKAVKLMIQVLQQQADDAKERAECLEQELEGERQAWEQAEAEVASLNCRIQWVE 60
Query: 429 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 608
+LDRA ER +GMKVIE R +KDEEKME+QE QLKEA HI E
Sbjct: 61 GKLDRAXERLATALQKLEEAEKAADESEKGMKVIEIRGLKDEEKMELQEFQLKEAMHIVE 120
Query: 609 EADRKYEEVARKLVI-----XXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXX 773
EADR YEEVA KLVI ++E + +LEE+++ + L
Sbjct: 121 EADRVYEEVAHKLVIIEGEWESMEERARLAEDPLAEARSRELEEQIRLMGQKLKCLSAAE 180
Query: 774 XXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLH 953
+DKLK KLEKTIDDLE+KL KEE+
Sbjct: 181 EKYSQKEDKYEEEIKILTDKLKKPETPAEFTERSVTKLEKTIDDLEDKLKCPKEEHFYTQ 240
Query: 954 QTLDQTLNELNCI*PKQKSLVPSETP 1031
+ LD EL P P+ TP
Sbjct: 241 RMLDPAGPELEVNLPHS---CPAATP 263
>gi|38086740|ref|XP_145641.2| similar to High mobility group protein
1 (HMG-1) (Amphoterin) (Heparin-binding protein p30)
[Mus musculus]
Length = 387
Score = 96.7 bits (239), Expect = 2e-20
Identities = 51/98 (52%), Positives = 63/98 (64%)
Frame = +3
Query: 342 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 521
Q E++GER+ E+AE +V +LN R+QLVEEELD AQE R M
Sbjct: 33 QLEVEGERQAWEQAEAEVTSLNCRVQLVEEELDYAQECLATALQKLEEAEKAADETERDM 92
Query: 522 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEV 635
IEN A+KDEE ME+QEM+LKEAKH AEEADR + E+
Sbjct: 93 XAIENLALKDEEMMELQEMKLKEAKHTAEEADRNFFEI 130
>gi|38083544|ref|XP_355057.1| similar to tropomyosin isoform 6 [Mus
musculus]
Length = 117
Score = 55.5 bits (132), Expect = 6e-08
Identities = 31/98 (31%), Positives = 47/98 (47%)
Frame = +3
Query: 693 VSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXX 872
++E +C +++E+++ + NL +DKLK
Sbjct: 18 LAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAER 77
Query: 873 XXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 986
KLEKTIDDLE+KL KEE++ + LDQTL +LN
Sbjct: 78 SVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 115
>gi|22218336|ref|NP_032935.1| periplakin; 195-kD protein; 195kDa
protein [Mus musculus]
Length = 1755
Score = 37.7 bits (86), Expect = 0.013
Identities = 38/177 (21%), Positives = 71/177 (40%), Gaps = 4/177 (2%)
Frame = +3
Query: 234 VRLRAMAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQR---ELDGERERREKAEGDVAAL 404
+R A NS++A R+I L+R EL+ ER+ R AE +V L
Sbjct: 1363 LRAEVTAFTNSIDAELRQIDKLHVELRRLQHRRAELERQLEELERERQARRAAELEVQRL 1422
Query: 405 NRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQL 584
+R+ +E+E + E+ KV+ + + + + QL
Sbjct: 1423 QQRLAALEQEEAKTGEKVTHT-----------------QKVVLQQDPQQTREHALLRAQL 1465
Query: 585 KEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVS-ELKCGDLEEELKNVTNNL 752
+E +H + + + E + RKL S +++ GD E+E++ + +L
Sbjct: 1466 EEERHRRQLLEGELEPLRRKLAALEKAEIKEKVVFSESVQVEKGDTEQEIQRLKKSL 1522
Score = 28.9 bits (63), Expect = 6.2
Identities = 22/102 (21%), Positives = 46/102 (45%)
Frame = +3
Query: 339 LQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRG 518
L+ +L E++++ EG+ A+ +I+ EEEL AQ+R
Sbjct: 1309 LRIQLSEEQKKQVDLEGERASQEEKIKRKEEEL--AQQRKERVVRQEVVQYEDEPDLRAE 1366
Query: 519 MKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARK 644
+ N + +++ ++L+ +H E +R+ EE+ R+
Sbjct: 1367 VTAFTNSIDAELRQIDKLHVELRRLQHRRAELERQLEELERE 1408
>gi|38089798|ref|XP_196478.3| hypothetical protein XP_196478 [Mus
musculus]
Length = 202
Score = 33.5 bits (75), Expect = 0.25
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
Frame = +3
Query: 339 LQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQ-ERXXXXXXXXXXXXXXXXXXXR 515
LQ L +RE +A+ L +R+Q +E EL+R Q E
Sbjct: 41 LQDRLALQREEARRAKASEDRLKQRLQGLEAELERTQSEGKAIYAEMSRQRQALKEELGT 100
Query: 516 GMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKL 647
K +E +E +E + + K AK AE A RK + +L
Sbjct: 101 RSKQLEEEVRSLKEHLETCQREAKTAKEEAERALRKQDGTLAQL 144
>gi|30794220|ref|NP_115999.1| spectrin beta 4; beta-spectrin 4;
quivering; lumbosacral neuroaxonal dystrophy; neuroaxonal
dystrophy [Mus musculus]
Length = 2561
Score = 32.7 bits (73), Expect = 0.43
Identities = 18/40 (45%), Positives = 19/40 (47%)
Frame = -3
Query: 259 RPAMARRRTQRAAGSGGRSARLCSCKSCSSRAPAPEPFPT 140
RP RR R G GG S R S + APAP P PT
Sbjct: 2374 RPKPRRRPRPREGGEGGGSRRSRSAPAQGGSAPAPPPPPT 2413
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Apr 12, 2004 5:36 AM
Number of letters in database: 11,906,519
Number of sequences in database: 26,199
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 11,906,519
effective HSP length: 102
effective length of database: 9,234,221
effective search space used: 2742563637
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)