Search to RefSeq (Human) database
Query= 20040204C-000262 (20040204C-000262) 20040204C-000262
(1331 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
27,437 sequences; 13,743,509 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|42476296|ref|NP_003280.2| tropomyosin 2 (beta); arthrogryposi... 306 2e-83
Alignment gi|27597085|ref|NP_000357.3| tropomyosin 1 (alpha) [Homo sapiens] 288 4e-78
Alignment gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens] 249 2e-66
Alignment gi|41144304|ref|XP_208313.3| similar to tropomyosin 4 [Homo sapi... 229 4e-60
Alignment gi|41148724|ref|XP_372046.1| similar to tropomyosin 4 [Homo sapi... 205 6e-53
Alignment gi|22748619|ref|NP_689476.1| tropomyosin 3 [Homo sapiens] 198 8e-51
Alignment gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens] 180 2e-45
Alignment gi|42658367|ref|XP_379997.1| similar to tropomyosin 3 [Homo sapi... 108 6e-24
Alignment gi|37538455|ref|XP_167254.3| similar to tropomyosin 3 [Homo sapi... 108 6e-24
Alignment gi|40255143|ref|NP_078857.3| chromosome 6 open reading frame 60 ... 53 5e-07
>gi|42476296|ref|NP_003280.2| tropomyosin 2 (beta); arthrogryposis
multiplex congenital, distal, type 1 [Homo sapiens]
Length = 284
Score = 306 bits (784), Expect = 2e-83
Identities = 166/284 (58%), Positives = 192/284 (67%)
Frame = +1
Query: 187 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 366
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 367 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 546
SE++K+AQEKLE +EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 547 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 726
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 727 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 906
V+E KCGDLEEELK VTNNL +KLK
Sbjct: 181 ERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 907 XXXXXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNELNCI 1038
KLEKTIDDLE+++ K K + + LD LN++ +
Sbjct: 241 FAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITSL 284
>gi|27597085|ref|NP_000357.3| tropomyosin 1 (alpha) [Homo sapiens]
Length = 284
Score = 288 bits (738), Expect = 4e-78
Identities = 161/281 (57%), Positives = 186/281 (66%)
Frame = +1
Query: 187 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 366
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 367 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 546
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 547 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 726
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 727 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 906
+SE + LEE+L+ + L SDKLK
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYEEEIKVLSDKLKEAETRAE 240
Query: 907 XXXXXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNEL 1029
KLEK+IDDLE++L K K + + LD LN++
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281
>gi|4507651|ref|NP_003281.1| tropomyosin 4 [Homo sapiens]
Length = 248
Score = 249 bits (637), Expect = 2e-66
Identities = 138/242 (57%), Positives = 153/242 (63%)
Frame = +1
Query: 313 LTHLQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRA 492
L +++K++ + + D+ + + Q +L+ ++ AEGDVAALNRRIQLVEEELDRA
Sbjct: 7 LEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRA 66
Query: 493 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 672
QER RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 126
Query: 673 EEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXX 852
EEVARKLVI VSELKCGDLEEELKNVTNNL
Sbjct: 127 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 186
Query: 853 XXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNELN 1032
SDKLK KLEKTIDDLEEKLAQAKE+NVGLHQTLDQTLNELN
Sbjct: 187 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 246
Query: 1033 CI 1038
CI
Sbjct: 247 CI 248
Score = 56.2 bits (134), Expect = 5e-08
Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
Frame = +1
Query: 190 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTE------- 348
E + +K+ +L+ + E A +RAE +E KC +EEEL ++ LK E
Sbjct: 127 EEVARKLVILEGELERAEERAE-------VSELKCGDLEEELKNVTNNLKSLEAASEKYS 179
Query: 349 DELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 498
++ DKY E +K +KL+ +E +A AE VA L + I +EE+L +A+E
Sbjct: 180 EKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 229
>gi|41144304|ref|XP_208313.3| similar to tropomyosin 4 [Homo sapiens]
Length = 292
Score = 229 bits (583), Expect = 4e-60
Identities = 132/245 (53%), Positives = 147/245 (60%)
Frame = +1
Query: 304 EEELTHLQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEEL 483
EE++ + + +G + ++ Q +L ++ A+GDVAALNRRIQLVEE+L
Sbjct: 48 EEKMLDVIQTEQGQDSRAWDKKVRIQGLQRELGGECERREKAKGDVAALNRRIQLVEEKL 107
Query: 484 DRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEAD 663
DRAQER RGMKVIENRAMKDEEKMEIQE+QLKEAKHIAEEAD
Sbjct: 108 DRAQERLATAPQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQELQLKEAKHIAEEAD 167
Query: 664 RKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXX 843
RKY EVARKLV VSELKCGDLEEELKNVTNNL
Sbjct: 168 RKYWEVARKLVFLEGELERAEERVEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKED 227
Query: 844 XXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLN 1023
DKLK KLEKTIDDLEEKLAQAKE+NVGLHQTLDQTLN
Sbjct: 228 KCEEEIKLLCDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLN 287
Query: 1024 ELNCI 1038
ELNCI
Sbjct: 288 ELNCI 292
Score = 51.2 bits (121), Expect = 2e-06
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Frame = +1
Query: 253 EQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSENLKDAQEKLEL-------SE 411
E+AE + +E KC +EEEL ++ LK E +KYSE +E+++L +E
Sbjct: 185 ERAEERVEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKCEEEIKLLCDKLKEAE 244
Query: 412 KKASDAEGDVAALNRRIQLVEEELDRAQE 498
+A AE VA L + I +EE+L +A+E
Sbjct: 245 TRAEFAERTVAKLEKTIDDLEEKLAQAKE 273
Score = 29.6 bits (65), Expect = 4.9
Identities = 21/100 (21%), Positives = 46/100 (46%)
Frame = +1
Query: 187 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 366
+E + K L+ + +N + + E+ + EK + EEE+ L KLK E +
Sbjct: 191 VEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKCEEEIKLLCDKLKEAETRAEFA 250
Query: 367 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELD 486
+ ++ ++ E+K + A+ + L++ + EL+
Sbjct: 251 ERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 290
>gi|41148724|ref|XP_372046.1| similar to tropomyosin 4 [Homo sapiens]
Length = 215
Score = 205 bits (521), Expect = 6e-53
Identities = 121/217 (55%), Positives = 128/217 (58%)
Frame = +1
Query: 388 QEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 567
Q +L+ + AEGDVA LNRRIQLVEEELDRAQER RGM
Sbjct: 21 QRELDGKREWREKAEGDVATLNRRIQLVEEELDRAQERLATALQKLEEAEKVADESERGM 80
Query: 568 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 747
KVIENRAMKDEEKMEIQEMQLKEAKHIAE+ADRKYE+VARKLVI
Sbjct: 81 KVIENRAMKDEEKMEIQEMQLKEAKHIAEKADRKYEKVARKLVIL--------------- 125
Query: 748 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 927
EELKNVTNNL SDK+K
Sbjct: 126 -------EELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKVKEAETRAEFAERTVA 178
Query: 928 KLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNELNCI 1038
KLEKTIDDLEEKLAQAKE+NVGLHQTLDQTLNELNCI
Sbjct: 179 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 215
Score = 44.7 bits (104), Expect = 1e-04
Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Frame = +1
Query: 199 KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTE-------DEL 357
++KM++ ++ + A AE+A+ + K + EEL ++ LK E ++
Sbjct: 91 EEKMEIQEMQLKEAKHIAEKADRKYEKVARKLV-ILEELKNVTNNLKSLEAASEKYSEKE 149
Query: 358 DKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 498
DKY E +K +K++ +E +A AE VA L + I +EE+L +A+E
Sbjct: 150 DKYEEEIKLLSDKVKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 196
>gi|22748619|ref|NP_689476.1| tropomyosin 3 [Homo sapiens]
Length = 243
Score = 198 bits (503), Expect = 8e-51
Identities = 122/284 (42%), Positives = 149/284 (52%)
Frame = +1
Query: 187 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 366
MEAIKKKMQMLKLDKENA+DRAEQAE AE+K
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAE-----AEQK------------------------- 31
Query: 367 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 546
+E+++ E ++AA+ ++++ E+ELDRAQER
Sbjct: 32 ------------QAEERSKQLEDELAAMQKKLKGTEDELDRAQERLATALQKLEEAEKAA 79
Query: 547 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 726
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 80 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 139
Query: 727 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 906
++E KC +LEEELKNVTNNL +DKLK
Sbjct: 140 ERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAE 199
Query: 907 XXXXXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNELNCI 1038
KLEKTIDDLE++L K K + + LD LN++ I
Sbjct: 200 FAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMTSI 243
>gi|24119203|ref|NP_705935.1| tropomyosin 3 [Homo sapiens]
Length = 248
Score = 180 bits (456), Expect = 2e-45
Identities = 101/237 (42%), Positives = 134/237 (56%)
Frame = +1
Query: 322 LQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQER 501
+++K++ + + D E + Q ++E + AE +VA+LNRRIQLVEEELDRAQER
Sbjct: 10 VKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQER 69
Query: 502 XXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEV 681
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEV
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEV 129
Query: 682 ARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXX 861
ARKLVI ++E +C +++E+++ + NL
Sbjct: 130 ARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEI 189
Query: 862 XXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNELN 1032
+DKLK KLEKTIDDLE+KL KE+++ + LDQTL +LN
Sbjct: 190 KILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 246
Score = 52.0 bits (123), Expect = 9e-07
Identities = 31/103 (30%), Positives = 57/103 (55%)
Frame = +1
Query: 190 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 369
E + +K+ +++ D E +RAE AES + +E+ + +++ L L + + DKY
Sbjct: 127 EEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYE 186
Query: 370 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 498
E +K +KL+ +E +A AE VA L + I +E++L +E
Sbjct: 187 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKE 229
>gi|42658367|ref|XP_379997.1| similar to tropomyosin 3 [Homo sapiens]
Length = 210
Score = 108 bits (271), Expect = 6e-24
Identities = 75/219 (34%), Positives = 101/219 (46%)
Frame = +1
Query: 376 LKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXX 555
+++ + K+++ +++A DAE L EEELD AQER
Sbjct: 7 MEEVKCKIQVLQQQADDAEERAERLQ-----FEEELDHAQERLTTALQKLEEEEKAADES 61
Query: 556 XRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXX 735
R MK ME+QE+QLKEAKHIAEEADRKYEEV RKLVI
Sbjct: 62 ERDMK------------MELQEIQLKEAKHIAEEADRKYEEVPRKLVIIEGDLECTEERA 109
Query: 736 XVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXX 915
++E +C + +E+++ + NL +DKLK
Sbjct: 110 ELAESRCQETDEQIRLMDQNLKCLSDAEEKYSQKEDIYEEEIKILTDKLKEAETRAEFTE 169
Query: 916 XXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNELN 1032
KLEKT DDLE KL KE+N+ + L QTL +LN
Sbjct: 170 RLVAKLEKTTDDLEYKLKCNKEENLCTQRMLYQTLLDLN 208
Score = 42.0 bits (97), Expect = 0.001
Identities = 25/99 (25%), Positives = 51/99 (51%)
Frame = +1
Query: 190 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 369
E + +K+ +++ D E +RAE AES +C++ +E++ + + LK D +KYS
Sbjct: 89 EEVPRKLVIIEGDLECTEERAELAES-------RCQETDEQIRLMDQNLKCLSDAEEKYS 141
Query: 370 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELD 486
+ +E++++ K +AE R + +E+ D
Sbjct: 142 QKEDIYEEEIKILTDKLKEAETRAEFTERLVAKLEKTTD 180
>gi|37538455|ref|XP_167254.3| similar to tropomyosin 3 [Homo sapiens]
Length = 210
Score = 108 bits (271), Expect = 6e-24
Identities = 75/219 (34%), Positives = 101/219 (46%)
Frame = +1
Query: 376 LKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXX 555
+++ + K+++ +++A DAE L EEELD AQER
Sbjct: 7 MEEVKCKIQVLQQQADDAEERAERLQ-----FEEELDHAQERLTTALQKLEEEEKAADES 61
Query: 556 XRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXX 735
R MK ME+QE+QLKEAKHIAEEADRKYEEV RKLVI
Sbjct: 62 ERDMK------------MELQEIQLKEAKHIAEEADRKYEEVPRKLVIIEGDLECTEERA 109
Query: 736 XVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXX 915
++E +C + +E+++ + NL +DKLK
Sbjct: 110 ELAESRCQETDEQIRLMDQNLKCLSDAEEKYSQKEDIYEEEIKILTDKLKEAETRAEFTE 169
Query: 916 XXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNELN 1032
KLEKT DDLE KL KE+N+ + L QTL +LN
Sbjct: 170 RLVAKLEKTTDDLEYKLKCNKEENLCTQRMLYQTLLDLN 208
Score = 42.0 bits (97), Expect = 0.001
Identities = 25/99 (25%), Positives = 51/99 (51%)
Frame = +1
Query: 190 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 369
E + +K+ +++ D E +RAE AES +C++ +E++ + + LK D +KYS
Sbjct: 89 EEVPRKLVIIEGDLECTEERAELAES-------RCQETDEQIRLMDQNLKCLSDAEEKYS 141
Query: 370 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELD 486
+ +E++++ K +AE R + +E+ D
Sbjct: 142 QKEDIYEEEIKILTDKLKEAETRAEFTERLVAKLEKTTD 180
>gi|40255143|ref|NP_078857.3| chromosome 6 open reading frame 60
[Homo sapiens]
Length = 1101
Score = 52.8 bits (125), Expect = 5e-07
Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 11/180 (6%)
Frame = +1
Query: 175 HCPAMEAI-------KKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKK 333
H A+EA+ KKK+QM D EQ DK EE Q+++EL +L++
Sbjct: 451 HHMAIEAVHSNAIRDKKKLQM---------DLEEQHNKDKLNLEEDKNQLQQELENLKEV 501
Query: 334 LKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXX 513
L ED+L+ ++ + Q+ + SE+ AEG +A+L + ++ ELD ++
Sbjct: 502 L---EDKLNTANQEIGHLQDMVRKSEQGLGSAEGLIASLQDSQERLQNELDLTKD-SLKE 557
Query: 514 XXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEM----QLKEAKHIAEEADRKYEEV 681
R AMK+EEK+++ +M ++K +++ +E + EE+
Sbjct: 558 TKDALLNVEGELEQERQQHEETIAAMKEEEKLKVDKMAHDLEIKWTENLRQECSKLREEL 617
Score = 33.5 bits (75), Expect = 0.34
Identities = 25/115 (21%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Frame = +1
Query: 175 HCPAMEAIK----KKMQMLKLDKENAIDRAEQAESDKKAAEEKCK--QVEEELTHLQKKL 336
H A++ ++ +++ K++ E +ID S +++ E C+ ++EEL H + +
Sbjct: 790 HAAAIDLLRHNHHQELAAAKMELERSIDI-----SRRQSKEHICRITDLQEELRHREHHI 844
Query: 337 KGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQER 501
+ E+ EN+ ++LE K+ + N++I+L E++L++ E+
Sbjct: 845 SELDKEVQHLHENISALTKELEFKGKEILRIRSE---SNQQIRLHEQDLNKRLEK 896
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Apr 12, 2004 5:34 AM
Number of letters in database: 13,743,509
Number of sequences in database: 27,437
Lambda K H
0.315 0.131 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 13,743,509
effective HSP length: 104
effective length of database: 10,890,061
effective search space used: 3691730679
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
Search to RefSeq (Mouse) database
Query= 20040204C-000262 (20040204C-000262) 20040204C-000262
(1331 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,199 sequences; 11,906,519 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|31560030|ref|NP_077745.2| tropomyosin 1, alpha; alpha tropomy... 328 4e-90
Alignment gi|11875203|ref|NP_033442.2| tropomyosin 2, beta [Mus musculus] 308 6e-84
Alignment gi|40254525|ref|NP_071709.2| tropomyosin 3, gamma; skalphaTM.2; ... 295 4e-80
Alignment gi|20864610|ref|XP_134274.1| similar to tropomyosin 4 [Mus muscu... 239 3e-63
Alignment gi|38094010|ref|XP_143011.2| similar to tropomyosin [Mus musculus] 128 7e-30
Alignment gi|38086740|ref|XP_145641.2| similar to High mobility group prot... 89 8e-18
Alignment gi|38083544|ref|XP_355057.1| similar to tropomyosin isoform 6 [M... 54 2e-07
Alignment gi|38084971|ref|XP_132740.2| similar to TATA element modulatory ... 46 4e-05
Alignment gi|6754784|ref|NP_034994.1| myosin Va; flailer; dilute lethal-20... 46 4e-05
Alignment gi|38091413|ref|XP_354615.1| myosin, heavy polypeptide 1, skelet... 45 1e-04
>gi|31560030|ref|NP_077745.2| tropomyosin 1, alpha; alpha tropomyosin
[Mus musculus]
Length = 284
Score = 328 bits (841), Expect = 4e-90
Identities = 179/282 (63%), Positives = 199/282 (70%)
Frame = +1
Query: 187 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 366
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 367 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 546
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 547 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 726
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 727 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 906
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 907 XXXXXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNELN 1032
KLEK+IDDLEEK+A AKE+N+ +HQ LDQTL ELN
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>gi|11875203|ref|NP_033442.2| tropomyosin 2, beta [Mus musculus]
Length = 284
Score = 308 bits (788), Expect = 6e-84
Identities = 167/284 (58%), Positives = 192/284 (67%)
Frame = +1
Query: 187 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 366
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 367 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 546
SE++KDAQEKLE +EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 547 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 726
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 727 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 906
V+E KCGDLEEELK VTNNL +KLK
Sbjct: 181 ERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 907 XXXXXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNELNCI 1038
KLEKTIDDLE+++ K K + + LD LN++ +
Sbjct: 241 FAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITSL 284
>gi|40254525|ref|NP_071709.2| tropomyosin 3, gamma; skalphaTM.2;
tropomyosin 5 [Mus musculus]
Length = 284
Score = 295 bits (755), Expect = 4e-80
Identities = 160/282 (56%), Positives = 192/282 (68%)
Frame = +1
Query: 187 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 366
MEAIKKKMQMLKLDKEN +DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKY 60
Query: 367 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 546
SE LKDAQEKLEL+EKKA+DAE +VA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 547 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 726
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 180
Query: 727 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 906
++E +C +++E+++ + NL +DKLK
Sbjct: 181 ERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAE 240
Query: 907 XXXXXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNELN 1032
KLEKTIDDLE+KL KE+++ + LDQTL +LN
Sbjct: 241 FAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 282
>gi|20864610|ref|XP_134274.1| similar to tropomyosin 4 [Mus musculus]
Length = 248
Score = 239 bits (610), Expect = 3e-63
Identities = 132/242 (54%), Positives = 149/242 (61%)
Frame = +1
Query: 313 LTHLQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRA 492
L +++K++ + + D + + Q +L+ ++ AEGD AALNRRIQL+EEELDRA
Sbjct: 7 LEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLEEELDRA 66
Query: 493 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 672
QE+ RGMKVIENRAMKDEEKMEI EMQLKEAKHI +EADRKY
Sbjct: 67 QEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKMEILEMQLKEAKHITDEADRKY 126
Query: 673 EEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXX 852
EEVARKLVI VSELKCGDLEEELKNVTNNL
Sbjct: 127 EEVARKLVILEGELKRAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 186
Query: 853 XXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNELN 1032
SDKLK KLEKTIDDLEEKLAQAKE+NVGLHQTLDQTLNELN
Sbjct: 187 EEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 246
Query: 1033 CI 1038
CI
Sbjct: 247 CI 248
Score = 53.5 bits (127), Expect = 3e-07
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
Frame = +1
Query: 190 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTE------- 348
E + +K+ +L+ + + A +RAE +E KC +EEEL ++ LK E
Sbjct: 127 EEVARKLVILEGELKRAEERAE-------VSELKCGDLEEELKNVTNNLKSLEAASEKYS 179
Query: 349 DELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 498
++ DKY E +K +KL+ +E +A AE V+ L + I +EE+L +A+E
Sbjct: 180 EKEDKYEEEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKE 229
Score = 30.8 bits (68), Expect = 1.9
Identities = 21/99 (21%), Positives = 45/99 (45%)
Frame = +1
Query: 190 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 369
E + K L+ + +N + + E+ + EK + EEE+ L KLK E +
Sbjct: 148 EVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAE 207
Query: 370 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELD 486
+ ++ ++ E+K + A+ + L++ + EL+
Sbjct: 208 RTVSKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 246
>gi|38094010|ref|XP_143011.2| similar to tropomyosin [Mus musculus]
Length = 275
Score = 128 bits (322), Expect = 7e-30
Identities = 85/233 (36%), Positives = 111/233 (47%), Gaps = 5/233 (2%)
Frame = +1
Query: 346 EDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXX 525
+ + D E + +++LE + AE +VA+LN RIQ VE +LDRA ER
Sbjct: 18 QQQADDAKERAECLEQELEGERQAWEQAEAEVASLNCRIQWVEGKLDRAXERLATALQKL 77
Query: 526 XXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI-- 699
+GMKVIE R +KDEEKME+QE QLKEA HI EEADR YEEVA KLVI
Sbjct: 78 EEAEKAADESEKGMKVIEIRGLKDEEKMELQEFQLKEAMHIVEEADRVYEEVAHKLVIIE 137
Query: 700 ---XXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXX 870
++E + +LEE+++ + L
Sbjct: 138 GEWESMEERARLAEDPLAEARSRELEEQIRLMGQKLKCLSAAEEKYSQKEDKYEEEIKIL 197
Query: 871 SDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNEL 1029
+DKLK KLEKTIDDLE+KL KE++ + LD EL
Sbjct: 198 TDKLKKPETPAEFTERSVTKLEKTIDDLEDKLKCPKEEHFYTQRMLDPAGPEL 250
Score = 40.8 bits (94), Expect = 0.002
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Frame = +1
Query: 190 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLK---GTEDEL- 357
E + K+ +++ + E+ +RA AE AE + +++EE++ + +KLK E++
Sbjct: 127 EEVAHKLVIIEGEWESMEERARLAEDP--LAEARSRELEEQIRLMGQKLKCLSAAEEKYS 184
Query: 358 ---DKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 498
DKY E +K +KL+ E A E V L + I +E++L +E
Sbjct: 185 QKEDKYEEEIKILTDKLKKPETPAEFTERSVTKLEKTIDDLEDKLKCPKE 234
>gi|38086740|ref|XP_145641.2| similar to High mobility group protein
1 (HMG-1) (Amphoterin) (Heparin-binding protein p30)
[Mus musculus]
Length = 387
Score = 88.6 bits (218), Expect = 8e-18
Identities = 49/112 (43%), Positives = 62/112 (55%)
Frame = +1
Query: 346 EDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXX 525
+ + D E Q ++E + AE +V +LN R+QLVEEELD AQE
Sbjct: 19 QQQADDVEERAMQFQLEVEGERQAWEQAEAEVTSLNCRVQLVEEELDYAQECLATALQKL 78
Query: 526 XXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEV 681
R M IEN A+KDEE ME+QEM+LKEAKH AEEADR + E+
Sbjct: 79 EEAEKAADETERDMXAIENLALKDEEMMELQEMKLKEAKHTAEEADRNFFEI 130
>gi|38083544|ref|XP_355057.1| similar to tropomyosin isoform 6 [Mus
musculus]
Length = 117
Score = 53.9 bits (128), Expect = 2e-07
Identities = 30/98 (30%), Positives = 47/98 (47%)
Frame = +1
Query: 739 VSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXX 918
++E +C +++E+++ + NL +DKLK
Sbjct: 18 LAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAER 77
Query: 919 XXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNELN 1032
KLEKTIDDLE+KL KE+++ + LDQTL +LN
Sbjct: 78 SVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 115
Score = 47.0 bits (110), Expect = 3e-05
Identities = 29/91 (31%), Positives = 49/91 (53%)
Frame = +1
Query: 226 DKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSENLKDAQEKLEL 405
D E +RAE AES + +E+ + +++ L L + + DKY E +K +KL+
Sbjct: 8 DLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKE 67
Query: 406 SEKKASDAEGDVAALNRRIQLVEEELDRAQE 498
+E +A AE VA L + I +E++L +E
Sbjct: 68 AETRAEFAERSVAKLEKTIDDLEDKLKCTKE 98
>gi|38084971|ref|XP_132740.2| similar to TATA element modulatory
factor 1 [Mus musculus]
Length = 1091
Score = 46.2 bits (108), Expect = 4e-05
Identities = 41/178 (23%), Positives = 69/178 (38%), Gaps = 16/178 (8%)
Frame = +1
Query: 202 KKMQMLKLDKENAIDRAEQAESDKKAA----EEKCKQVEEELTHLQKKLKGTEDELDKYS 369
+K+ +L N I + + D + K K++EEEL HL++ L G E+ ++
Sbjct: 561 EKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQVLDGKEEVEKQHR 620
Query: 370 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXX--XXXXXXXXXXXX 543
EN+K +E EK + D+ L + + + LD A
Sbjct: 621 ENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKANAAKDSEVQ 680
Query: 544 XXXXXRGMKVIE----------NRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVAR 687
R MK E A + +E + +Q L+ A AE+A + E+ R
Sbjct: 681 EAALRREMKAKEELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLR 738
Score = 36.2 bits (82), Expect = 0.044
Identities = 56/305 (18%), Positives = 104/305 (34%), Gaps = 1/305 (0%)
Frame = +1
Query: 178 CPAMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDEL 357
C +A KK+M+ +K + ++ ++ A+ K+ E+ ++G +E
Sbjct: 516 CKERDAAKKEMKTIKEELATRLNSSQTADLLKEKDEQ---------------IQGLMEEG 560
Query: 358 DKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXX 537
+K S+ ++ K D E +A LNR+ + +EEEL ++
Sbjct: 561 EKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQ----VLDGKEEVE 616
Query: 538 XXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEA-DRKYEEVARKLVIXXXXX 714
+ + + R KD ++++ +L+E + A D Y E+
Sbjct: 617 KQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKANAAKD 676
Query: 715 XXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXX 894
E+K +EEL D
Sbjct: 677 SEVQEAALRREMKA---KEELSGALEK---------AQEEARQQQEALVLQVGDLRLALQ 724
Query: 895 XXXXXXXXXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNELNCI*PKQKKSRSIKN 1074
L I +L+++L +A+ +N L Q++ T L R I+N
Sbjct: 725 RAEQAAARKEDYLRHEISELQQRLQEAENRNQELSQSVSSTARPL---------LRQIEN 775
Query: 1075 SQATL 1089
QATL
Sbjct: 776 LQATL 780
>gi|6754784|ref|NP_034994.1| myosin Va; flailer; dilute lethal-20J
protein [Mus musculus]
Length = 1853
Score = 46.2 bits (108), Expect = 4e-05
Identities = 37/164 (22%), Positives = 73/164 (44%)
Frame = +1
Query: 202 KKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSENLK 381
++ + L + EN I + Q + D++ + KC L +KL E + +E L+
Sbjct: 916 ERYKKLHIGMENKIMQL-QRKVDEQNKDYKC---------LMEKLTNLEGVYNSETEKLR 965
Query: 382 DAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXR 561
+ E+L+LSE++A A G V +L I + ++L++ +
Sbjct: 966 NDVERLQLSEEEAKVATGRVLSLQEEIAKLRKDLEQTRSEKKSIEERADKYKQETDQLVS 1025
Query: 562 GMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKL 693
+K E + +EK + +++AK + E +RK E ++L
Sbjct: 1026 NLK--EENTLLKQEKETLNHRIVEQAKEMTETMERKLVEETKQL 1067
Score = 33.5 bits (75), Expect = 0.29
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Frame = +1
Query: 211 QMLKLDKENAIDRA--EQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSENL-- 378
++L L +E A R EQ S+KK+ EE+ + ++E L LK L + E L
Sbjct: 984 RVLSLQEEIAKLRKDLEQTRSEKKSIEERADKYKQETDQLVSNLKEENTLLKQEKETLNH 1043
Query: 379 ---KDAQEKLELSEKK----ASDAEGDVAALNRRIQLVEEELDRAQER 501
+ A+E E E+K E D+ R Q + E R +ER
Sbjct: 1044 RIVEQAKEMTETMERKLVEETKQLELDLNDERLRYQNLLNEFSRLEER 1091
>gi|38091413|ref|XP_354615.1| myosin, heavy polypeptide 1, skeletal
muscle, adult [Mus musculus]
Length = 1942
Score = 45.1 bits (105), Expect = 1e-04
Identities = 28/110 (25%), Positives = 61/110 (55%), Gaps = 8/110 (7%)
Frame = +1
Query: 187 MEAIKKKMQM-LKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKG------- 342
+E K+K++ LKL +E+ +D E+DK+ +EK K+ E E+++LQ K++
Sbjct: 1055 LERAKRKLEGDLKLAQESTMD----VENDKQQLDEKLKKKEFEMSNLQSKIEDEQALGMQ 1110
Query: 343 TEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRA 492
+ ++ + +++ +E++E + AE + L+R ++ + E L+ A
Sbjct: 1111 LQKKIKELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEA 1160
Score = 40.4 bits (93), Expect = 0.002
Identities = 31/159 (19%), Positives = 73/159 (45%), Gaps = 1/159 (0%)
Frame = +1
Query: 196 IKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYSEN 375
I+ +M+ + + NA ++A++A +D E+ K+ ++ HL++ K E +
Sbjct: 1744 IQGEMEDIVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLE-------QT 1796
Query: 376 LKDAQEKLELSEKKA-SDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXX 552
+KD Q +L+ +E+ A + + L R++ +E E++ Q+R
Sbjct: 1797 VKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVENEQKRNVEAIKGLRKHERRVKE 1856
Query: 553 XXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRK 669
+ ++ ++ ++ + ++K K AEEA+ +
Sbjct: 1857 LTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEEQ 1895
Score = 39.3 bits (90), Expect = 0.005
Identities = 35/169 (20%), Positives = 66/169 (39%)
Frame = +1
Query: 187 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 366
+E ++ + +++D E A + E D K A+E VE + L +KLK E E+
Sbjct: 1041 LEGSLEQEKKIRMDLERA---KRKLEGDLKLAQESTMDVENDKQQLDEKLKKKEFEMSNL 1097
Query: 367 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 546
++D Q +KK + L RI+ +EEE++ +
Sbjct: 1098 QSKIEDEQALGMQLQKK-------IKELQARIEELEEEIEAERASRAKAEKQRSDLSREL 1150
Query: 547 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKL 693
++ E + +E + ++ + EEA ++E A L
Sbjct: 1151 EEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEATAATL 1199
Score = 37.4 bits (85), Expect = 0.020
Identities = 31/150 (20%), Positives = 64/150 (42%), Gaps = 1/150 (0%)
Frame = +1
Query: 196 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVEEELTHLQKKLKGTEDELDKYSE 372
+++KM L +K N + Q+E+D A AEE+C Q+ + L+ K+K + + E
Sbjct: 880 LEEKMVALMQEK-NDLQLQVQSEADSLADAEERCDQLIKTKIQLEAKIKEVTERAEDEEE 938
Query: 373 NLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXX 552
+ K E + S+ + D+ L + VE+E + +
Sbjct: 939 INAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDETIAK 998
Query: 553 XXRGMKVIENRAMKDEEKMEIQEMQLKEAK 642
+ E +A+++ + + ++Q +E K
Sbjct: 999 LTK-----EKKALQEAHQQTLDDLQAEEDK 1023
Score = 37.0 bits (84), Expect = 0.026
Identities = 54/310 (17%), Positives = 110/310 (35%), Gaps = 5/310 (1%)
Frame = +1
Query: 175 HCPAMEA---IKKKMQMLKLDKE--NAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLK 339
H P M+ IK ++ + +KE N + E+A+ + AE K K++EE++ L ++
Sbjct: 833 HWPWMKLYFKIKPLLKSAETEKEMANMKEEFEKAKENLAKAEAKRKELEEKMVALMQEKN 892
Query: 340 GTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXX 519
+ ++ +++L DA+E+ + K E + + R + EEE++
Sbjct: 893 DLQLQVQSEADSLADAEERCDQLIKTKIQLEAKIKEVTERAE-DEEEIN----------- 940
Query: 520 XXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI 699
R ++ + KD + +E+ ++++ KH E
Sbjct: 941 ------AELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATEN-------------- 980
Query: 700 XXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDK 879
++KN+T + D
Sbjct: 981 ------------------------KVKNLTEEMAGLDETIAKLTKEKKALQEAHQQTLDD 1016
Query: 880 LKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEKNVGLHQTLDQTLNELNCI*PKQKKS 1059
L+ KLE+ +DDLE L Q K+ + L + + +L Q+ +
Sbjct: 1017 LQAEEDKVNTLTKAKIKLEQQVDDLEGSLEQEKKIRMDLERAKRKLEGDLKL---AQEST 1073
Query: 1060 RSIKNSQATL 1089
++N + L
Sbjct: 1074 MDVENDKQQL 1083
Score = 35.8 bits (81), Expect = 0.058
Identities = 35/162 (21%), Positives = 70/162 (43%)
Frame = +1
Query: 187 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 366
+E +K++ + L+ + + ++ + E+ KQ+E+E + LQ L+ E L+
Sbjct: 1502 LETLKRENKNLQQEISDLTEQIAEGGKRIHELEKIKKQIEQEKSELQAALEEAEASLE-- 1559
Query: 367 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 546
E K + +LEL++ K+ ++R+I +EE+D+ +
Sbjct: 1560 HEEGKILRIQLELNQVKSE--------IDRKIAEKDEEIDQLKRNHIRVVESMQSTLDAE 1611
Query: 547 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 672
++ + D +MEI QL + +A EA R Y
Sbjct: 1612 IRSRNDAIRLKKKMEGDLNEMEI---QLNHSNRMAAEALRNY 1650
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Apr 12, 2004 5:36 AM
Number of letters in database: 11,906,519
Number of sequences in database: 26,199
Lambda K H
0.315 0.131 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 11,906,519
effective HSP length: 103
effective length of database: 9,208,022
effective search space used: 3130727480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)