Search to RefSeq (Human) database
Query= 20040204C-001479 (20040204C-001479) 20040204C-001479
(1159 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
27,437 sequences; 13,743,509 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4759282|ref|NP_004214.1| ubiquitin-conjugating enzyme E2L 6 i... 253 2e-67
Alignment gi|4507789|ref|NP_003338.1| ubiquitin-conjugating enzyme E2L 3 i... 177 2e-44
Alignment gi|38157986|ref|NP_937826.1| ubiquitin-conjugating enzyme E2L 6 ... 148 8e-36
Alignment gi|38157976|ref|NP_937800.1| ubiquitin-conjugating enzyme E2L 3 ... 134 2e-31
Alignment gi|8393719|ref|NP_057067.1| ubiquitin-conjugating enzyme HBUCE1 ... 107 1e-23
Alignment gi|4507773|ref|NP_003329.1| ubiquitin-conjugating enzyme E2D 1; ... 104 1e-22
Alignment gi|4507775|ref|NP_003330.1| ubiquitin-conjugating enzyme E2D 2 i... 104 1e-22
Alignment gi|33149322|ref|NP_871621.1| ubiquitin-conjugating enzyme E2D 3 ... 103 2e-22
Alignment gi|33149312|ref|NP_871616.1| ubiquitin-conjugating enzyme E2D 3 ... 102 5e-22
Alignment gi|33149310|ref|NP_871615.1| ubiquitin-conjugating enzyme E2D 3 ... 102 5e-22
>gi|4759282|ref|NP_004214.1| ubiquitin-conjugating enzyme E2L 6
isoform 1; ubiquitin-protein ligase; ubiquitin carrier
protein; retinoic acid induced gene B protein [Homo
sapiens]
Length = 153
Score = 253 bits (645), Expect = 2e-67
Identities = 119/153 (77%), Positives = 134/153 (87%)
Frame = +1
Query: 247 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 426
M AS RV KELEDLQK+ P YL L SDDANVLVWHALLLP++PPY+L+AFNLRISFP E
Sbjct: 1 MMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPE 60
Query: 427 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 606
YPFKPP + FTT+IYHPNVD GQ+CLPIIS+ENWKPCTKTCQVLEALNVLVNRP +P
Sbjct: 61 YPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREP 120
Query: 607 LRVELADQLTQDPELFNRKAEEFTLQFGVDRPS 705
LR++LAD LTQ+PELF + AEEFTL+FGVDRPS
Sbjct: 121 LRMDLADLLTQNPELFRKNAEEFTLRFGVDRPS 153
>gi|4507789|ref|NP_003338.1| ubiquitin-conjugating enzyme E2L 3
isoform 1; ubiquitin-conjugating enzyme UBCH7; ubiquitin
carrier protein; ubiquitin-protein ligase [Homo sapiens]
Length = 154
Score = 177 bits (448), Expect = 2e-44
Identities = 79/152 (51%), Positives = 112/152 (73%)
Frame = +1
Query: 247 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 426
M AS+R+ KELE+++K + + D+AN+L W L++P+ PPY+ AF + I+FP E
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 427 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 606
YPFKPP +TF T+IYHPN+D +GQVCLP+IS ENWKP TKT QV+++L LVN P+P P
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 120
Query: 607 LRVELADQLTQDPELFNRKAEEFTLQFGVDRP 702
LR +LA++ ++D + F + AEEFT ++G RP
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 152
>gi|38157986|ref|NP_937826.1| ubiquitin-conjugating enzyme E2L 6
isoform 2; ubiquitin-protein ligase; ubiquitin carrier
protein; retinoic acid induced gene B protein [Homo
sapiens]
Length = 87
Score = 148 bits (373), Expect = 8e-36
Identities = 67/86 (77%), Positives = 77/86 (89%)
Frame = +1
Query: 448 VTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPLRVELAD 627
+ FTT+IYHPNVD GQ+CLPIIS+ENWKPCTKTCQVLEALNVLVNRP +PLR++LAD
Sbjct: 2 IKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLAD 61
Query: 628 QLTQDPELFNRKAEEFTLQFGVDRPS 705
LTQ+PELF + AEEFTL+FGVDRPS
Sbjct: 62 LLTQNPELFRKNAEEFTLRFGVDRPS 87
>gi|38157976|ref|NP_937800.1| ubiquitin-conjugating enzyme E2L 3
isoform 2; ubiquitin-conjugating enzyme UBCH7; ubiquitin
carrier protein; ubiquitin-protein ligase [Homo sapiens]
Length = 121
Score = 134 bits (336), Expect = 2e-31
Identities = 58/113 (51%), Positives = 81/113 (71%)
Frame = +1
Query: 247 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 426
M AS+R+ KELE+++K + + D+AN+L W L++P+ PPY+ AF + I+FP E
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 427 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVN 585
YPFKPP +TF T+IYHPN+D +GQVCLP+IS ENWKP TKT Q A ++ +
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQETSAFPIMAS 113
>gi|8393719|ref|NP_057067.1| ubiquitin-conjugating enzyme HBUCE1
[Homo sapiens]
Length = 147
Score = 107 bits (268), Expect = 1e-23
Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Frame = +1
Query: 253 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 429
A KR+ KEL DLQ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRIQKELTDLQRDPPAQCSAGPVGD-DLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 430 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 609
PFKPP V FTT+IYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVLLSICSLLCDPNPDDPL 119
Query: 610 RVELADQLTQDPELFNRKAEEFTLQFGV 693
E+A D E +NR A E+T ++ +
Sbjct: 120 VPEIAHTYKADREKYNRLAREWTQKYAM 147
>gi|4507773|ref|NP_003329.1| ubiquitin-conjugating enzyme E2D 1;
ubiquitin carrier protein; ubiquitin-conjugating enzyme
E2-17 kDa 1; stimulator of Fe transport [Homo sapiens]
Length = 147
Score = 104 bits (260), Expect = 1e-22
Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Frame = +1
Query: 253 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 429
A KR+ KEL DLQ++ P + D ++ W A ++ P Y F L + FP +Y
Sbjct: 2 ALKRIQKELSDLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 60
Query: 430 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 609
PFKPP + FTT+IYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVLLSICSLLCDPNPDDPL 119
Query: 610 RVELADQLTQDPELFNRKAEEFTLQFGV 693
++A D E +NR A E+T ++ +
Sbjct: 120 VPDIAQIYKSDKEKYNRHAREWTQKYAM 147
>gi|4507775|ref|NP_003330.1| ubiquitin-conjugating enzyme E2D 2
isoform 1; ubiquitin carrier protein;
ubiquitin-conjugating enzyme E2-17 kDa 2 [Homo sapiens]
Length = 147
Score = 104 bits (260), Expect = 1e-22
Identities = 59/148 (39%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Frame = +1
Query: 253 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 429
A KR+ KEL DL ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRIHKELNDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 430 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 609
PFKPP V FTTRIYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 610 RVELADQLTQDPELFNRKAEEFTLQFGV 693
E+A D E +NR A E+T ++ +
Sbjct: 120 VPEIARIYKTDREKYNRIAREWTQKYAM 147
>gi|33149322|ref|NP_871621.1| ubiquitin-conjugating enzyme E2D 3
isoform 2; ubiquitin-conjugating enzyme E2-17 kDa 3;
ubiquitin carrier protein [Homo sapiens]
Length = 148
Score = 103 bits (257), Expect = 2e-22
Identities = 58/148 (39%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Frame = +1
Query: 253 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 429
A KR+ KEL DL ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 430 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 609
PFKPP V FTTRIYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 610 RVELADQLTQDPELFNRKAEEFTLQFGV 693
E+A D + +NR A E+T ++ +
Sbjct: 120 VPEIARIYKTDRDKYNRLAREWTEKYAM 147
>gi|33149312|ref|NP_871616.1| ubiquitin-conjugating enzyme E2D 3
isoform 1; ubiquitin-conjugating enzyme E2-17 kDa 3;
ubiquitin carrier protein [Homo sapiens]
Length = 147
Score = 102 bits (254), Expect = 5e-22
Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Frame = +1
Query: 253 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 429
A KR+ KEL DL ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 430 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 609
PFKPP V FTTRIYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 610 RVELADQLTQDPELFNRKAEEFTLQFGV 693
E+A D + +NR + E+T ++ +
Sbjct: 120 VPEIARIYKTDRDKYNRISREWTQKYAM 147
>gi|33149310|ref|NP_871615.1| ubiquitin-conjugating enzyme E2D 3
isoform 1; ubiquitin-conjugating enzyme E2-17 kDa 3;
ubiquitin carrier protein [Homo sapiens]
Length = 147
Score = 102 bits (254), Expect = 5e-22
Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Frame = +1
Query: 253 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 429
A KR+ KEL DL ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 430 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 609
PFKPP V FTTRIYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 610 RVELADQLTQDPELFNRKAEEFTLQFGV 693
E+A D + +NR + E+T ++ +
Sbjct: 120 VPEIARIYKTDRDKYNRISREWTQKYAM 147
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Apr 12, 2004 5:34 AM
Number of letters in database: 13,743,509
Number of sequences in database: 27,437
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 13,743,509
effective HSP length: 103
effective length of database: 10,917,498
effective search space used: 3078734436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20040204C-001479 (20040204C-001479) 20040204C-001479
(1159 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,199 sequences; 11,906,519 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|9910602|ref|NP_064333.1| E2 ubiquitin conjugating enzyme; ubi... 226 1e-59
Alignment gi|6678481|ref|NP_033482.1| ubiquitin-conjugating enzyme E2L 3; ... 177 1e-44
Alignment gi|20891905|ref|XP_148568.1| ubiquitin-conjugating enzyme E2L 3 ... 177 1e-44
Alignment gi|38091553|ref|XP_130993.3| similar to Ubiquitin-conjugating en... 133 2e-31
Alignment gi|38090407|ref|XP_354536.1| similar to Ubiquitin-conjugating en... 115 4e-26
Alignment gi|38077559|ref|XP_355443.1| similar to Ubiquitin-conjugating en... 114 1e-25
Alignment gi|13386314|ref|NP_082778.1| RIKEN cDNA 1700013N18 [Mus musculus] 108 4e-24
Alignment gi|9910600|ref|NP_064296.1| ubiquitin-conjugating enzyme E2D 2; ... 104 8e-23
Alignment gi|21703838|ref|NP_663395.1| ubiquitin-conjugating enzyme E2D 1,... 104 8e-23
Alignment gi|13384718|ref|NP_079632.1| ubiquitin-conjugating enzyme E2D 3 ... 102 4e-22
>gi|9910602|ref|NP_064333.1| E2 ubiquitin conjugating enzyme;
ubiquitin-conjugating enzyme 8 [Mus musculus]
Length = 152
Score = 226 bits (577), Expect = 1e-59
Identities = 109/151 (72%), Positives = 127/151 (84%)
Frame = +1
Query: 253 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEEYP 432
ASKRVAKELE L KELP YL +L SD ANVLVWH LLLP++ PY L+AF +RI FP EYP
Sbjct: 2 ASKRVAKELESLSKELPPYLRQLSSDYANVLVWHMLLLPDQLPYGLKAFQVRIDFPREYP 61
Query: 433 FKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPLR 612
FKPPT+ FTT+IYHPNV +G VCLP+ISNENWKP TK QVLEALNVLV++P +P+R
Sbjct: 62 FKPPTLRFTTKIYHPNVREDGLVCLPLISNENWKPYTKPYQVLEALNVLVSKPNLEEPVR 121
Query: 613 VELADQLTQDPELFNRKAEEFTLQFGVDRPS 705
+ELAD LTQ+PE+F +KAEEFTL+FGVDRPS
Sbjct: 122 LELADLLTQNPEMFRKKAEEFTLKFGVDRPS 152
>gi|6678481|ref|NP_033482.1| ubiquitin-conjugating enzyme E2L 3;
ubiquitin-conjugating enzyme 7 [Mus musculus]
Length = 154
Score = 177 bits (448), Expect = 1e-44
Identities = 79/152 (51%), Positives = 112/152 (73%)
Frame = +1
Query: 247 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 426
M AS+R+ KELE+++K + + D+AN+L W L++P+ PPY+ AF + I+FP E
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 427 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 606
YPFKPP +TF T+IYHPN+D +GQVCLP+IS ENWKP TKT QV+++L LVN P+P P
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 120
Query: 607 LRVELADQLTQDPELFNRKAEEFTLQFGVDRP 702
LR +LA++ ++D + F + AEEFT ++G RP
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 152
>gi|20891905|ref|XP_148568.1| ubiquitin-conjugating enzyme E2L 3
[Mus musculus]
Length = 154
Score = 177 bits (448), Expect = 1e-44
Identities = 79/152 (51%), Positives = 112/152 (73%)
Frame = +1
Query: 247 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 426
M AS+R+ KELE+++K + + D+AN+L W L++P+ PPY+ AF + I+FP E
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 427 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 606
YPFKPP +TF T+IYHPN+D +GQVCLP+IS ENWKP TKT QV+++L LVN P+P P
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 120
Query: 607 LRVELADQLTQDPELFNRKAEEFTLQFGVDRP 702
LR +LA++ ++D + F + AEEFT ++G RP
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 152
>gi|38091553|ref|XP_130993.3| similar to Ubiquitin-conjugating
enzyme E2-18 kDa UbcH7 (Ubiquitin-protein ligase)
(Ubiquitin carrier protein) (UbcM4) (E2-F1) (L-UBC) [Mus
musculus]
Length = 121
Score = 133 bits (334), Expect = 2e-31
Identities = 60/114 (52%), Positives = 82/114 (71%)
Frame = +1
Query: 361 LLPEKPPYNLRAFNLRISFPEEYPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPC 540
L+ + P Y+ AF + I+FP EYPFKPP +TF T+IYHPN+D +GQVCLP+IS ENWKP
Sbjct: 7 LMKDNPLYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPA 66
Query: 541 TKTCQVLEALNVLVNRPEPGQPLRVELADQLTQDPELFNRKAEEFTLQFGVDRP 702
TKT QV+++L L N P+P PLR LA++ + + + F + EEFT ++G RP
Sbjct: 67 TKTDQVIQSLTALANDPQPEHPLRAGLAEEYS-NRKKFCKNVEEFTKKYGEKRP 119
>gi|38090407|ref|XP_354536.1| similar to Ubiquitin-conjugating
enzyme E2-18 kDa UbcH7 (Ubiquitin-protein ligase)
(Ubiquitin carrier protein) (UbcM4) (E2-F1) (L-UBC) [Mus
musculus]
Length = 93
Score = 115 bits (289), Expect = 4e-26
Identities = 49/93 (52%), Positives = 69/93 (74%)
Frame = +1
Query: 247 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 426
M AS+R+ KELE+++K + + D+AN+L W L++P+ PPY+ AF + I+FP E
Sbjct: 1 MAASRRLMKELEEIRKRGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 427 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNE 525
YPFKPP +TF T+IYHPN+D +GQVCLP+IS E
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAE 93
>gi|38077559|ref|XP_355443.1| similar to Ubiquitin-conjugating
enzyme E2-18 kDa UbcH7 (Ubiquitin-protein ligase)
(Ubiquitin carrier protein) (UbcM4) (E2-F1) (L-UBC) [Mus
musculus]
Length = 93
Score = 114 bits (285), Expect = 1e-25
Identities = 49/93 (52%), Positives = 69/93 (74%)
Frame = +1
Query: 247 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 426
M AS+R+ KELE+++K + + D+AN+L W L++P+ PPY+ AF + I+FP E
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 427 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNE 525
YPFKPP +TF T+IYHPN+D +GQVCLP+IS E
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAE 93
>gi|13386314|ref|NP_082778.1| RIKEN cDNA 1700013N18 [Mus musculus]
Length = 147
Score = 108 bits (271), Expect = 4e-24
Identities = 62/150 (41%), Positives = 86/150 (57%), Gaps = 3/150 (2%)
Frame = +1
Query: 253 ASKRVAKELEDLQKELPRYL--GKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPE 423
A KR+ KEL DL ++ P G + D + W A ++ P PY AF L I FP
Sbjct: 2 ALKRIHKELNDLAQDPPAQCSAGPVGED---MFHWQATIMGPNDSPYQGGAFFLTIDFPT 58
Query: 424 EYPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQ 603
EYPFKPP V FTTRIYHPNV+S G +CL I+ ++ W P +VL +++ L+ P P
Sbjct: 59 EYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQ-WSPALTISKVLLSISSLLCDPNPDD 117
Query: 604 PLRVELADQLTQDPELFNRKAEEFTLQFGV 693
PL E+A D + +NR A E+T ++ +
Sbjct: 118 PLVPEIAQIYKTDRDKYNRTAREWTQKYAM 147
>gi|9910600|ref|NP_064296.1| ubiquitin-conjugating enzyme E2D 2;
ubiquitin conjugating enzyme 2e [Mus musculus]
Length = 147
Score = 104 bits (260), Expect = 8e-23
Identities = 59/148 (39%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Frame = +1
Query: 253 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 429
A KR+ KEL DL ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRIHKELNDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 430 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 609
PFKPP V FTTRIYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 610 RVELADQLTQDPELFNRKAEEFTLQFGV 693
E+A D E +NR A E+T ++ +
Sbjct: 120 VPEIARIYKTDREKYNRIAREWTQKYAM 147
>gi|21703838|ref|NP_663395.1| ubiquitin-conjugating enzyme E2D 1,
UBC4/5 homolog [Mus musculus]
Length = 147
Score = 104 bits (260), Expect = 8e-23
Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Frame = +1
Query: 253 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 429
A KR+ KEL DLQ++ P + D ++ W A ++ P Y F L + FP +Y
Sbjct: 2 ALKRIQKELSDLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 60
Query: 430 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 609
PFKPP + FTT+IYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVLLSICSLLCDPNPDDPL 119
Query: 610 RVELADQLTQDPELFNRKAEEFTLQFGV 693
++A D E +NR A E+T ++ +
Sbjct: 120 VPDIAQIYKSDKEKYNRHAREWTQKYAM 147
>gi|13384718|ref|NP_079632.1| ubiquitin-conjugating enzyme E2D 3
(UBC4/5 homolog, yeast) [Mus musculus]
Length = 147
Score = 102 bits (254), Expect = 4e-22
Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Frame = +1
Query: 253 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 429
A KR+ KEL DL ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 430 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 609
PFKPP V FTTRIYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 610 RVELADQLTQDPELFNRKAEEFTLQFGV 693
E+A D + +NR + E+T ++ +
Sbjct: 120 VPEIARIYKTDRDKYNRISREWTQKYAM 147
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Apr 12, 2004 5:36 AM
Number of letters in database: 11,906,519
Number of sequences in database: 26,199
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 11,906,519
effective HSP length: 102
effective length of database: 9,234,221
effective search space used: 2613284543
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)