Search to RefSeq (Human) database
Query= 20040204C-002151 (20040204C-002151) 20040204C-002151
(912 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
27,437 sequences; 13,743,509 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|20149600|ref|NP_036360.2| methionine sulfoxide reductase B; p... 294 6e-80
Alignment gi|37620216|ref|NP_932346.1| hypothetical protein LOC253827 [Hom... 144 6e-35
Alignment gi|7706511|ref|NP_057416.1| selenoprotein X, 1; selenoprotein R;... 52 7e-07
Alignment gi|42661748|ref|XP_372728.2| similar to HSPC270 [Homo sapiens] 34 0.16
Alignment gi|41149782|ref|XP_373522.1| hypothetical protein XP_378334 [Hom... 31 1.0
Alignment gi|13435397|ref|NP_077084.1| PHD finger protein 1 isoform b [Hom... 30 1.7
Alignment gi|4505777|ref|NP_002627.1| PHD finger protein 1 isoform a [Homo... 30 1.7
Alignment gi|42661349|ref|XP_378738.1| hypothetical protein XP_378738 [Hom... 30 3.0
Alignment gi|23510283|ref|NP_060561.3| elongation protein 3 homolog [Homo ... 29 3.9
Alignment gi|4507961|ref|NP_003398.1| zinc finger protein 36, C3H type, ho... 29 5.0
>gi|20149600|ref|NP_036360.2| methionine sulfoxide reductase B;
pilin-like transcription factor [Homo sapiens]
Length = 201
Score = 294 bits (752), Expect = 6e-80
Identities = 142/173 (82%), Positives = 148/173 (85%)
Frame = +1
Query: 37 GLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTPEQFHVTREK 216
GL RAV G+A GG G+AGSL E L+KSEWQKKLTPEQF+VTREK
Sbjct: 29 GLTLGTAPRRAVRGQAGGGGPGTAGIVGEAGSLATCELPLAKSEWQKKLTPEQFYVTREK 88
Query: 217 GTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESDTGI 396
GTEPPFSG YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDES TGI
Sbjct: 89 GTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESHTGI 148
Query: 397 LRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPRKH 555
LRR+DTSLG+ARTEVVCKQCEAHLGHVFPDGPGP GQRFCINSVALKFKPRKH
Sbjct: 149 LRRLDTSLGSARTEVVCKQCEAHLGHVFPDGPGPNGQRFCINSVALKFKPRKH 201
>gi|37620216|ref|NP_932346.1| hypothetical protein LOC253827 [Homo
sapiens]
Length = 192
Score = 144 bits (364), Expect = 6e-35
Identities = 71/153 (46%), Positives = 95/153 (62%), Gaps = 3/153 (1%)
Frame = +1
Query: 97 LSPKVGTGDAGSLTKREP---FLSKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAG 267
L+ +G+ +GS ++ S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G
Sbjct: 23 LAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPG 82
Query: 268 MYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVC 447
+Y CV C +PLF SE K+ SG+GWPSF + + +D D S G R E C
Sbjct: 83 IYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTD-------DFSYGMHRVETSC 135
Query: 448 KQCEAHLGHVFPDGPGPTGQRFCINSVALKFKP 546
QC AHLGH+F DGP PTG+R+CINS AL F P
Sbjct: 136 SQCGAHLGHIFDDGPRPTGKRYCINSAALSFTP 168
>gi|7706511|ref|NP_057416.1| selenoprotein X, 1; selenoprotein R;
methionine sulfoxide reductase; Methionine-R-sulfoxide
reductase [Homo sapiens]
Length = 116
Score = 51.6 bits (122), Expect = 7e-07
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Frame = +1
Query: 244 YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA-HGTSGSDESDTGILRRVDTSL 420
+ N+ E G+Y C C LFSS KY + WP+F+E H S + +R + +
Sbjct: 12 FQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADS--------VAKRPEHNR 63
Query: 421 GTARTEVVCKQCEAHLGHVF-PDGPGPTGQRF-CINSVALKFKPR 549
A +V C +C LGH F DGP P RF +S +LKF P+
Sbjct: 64 SEA-LKVSCGKCGNGLGHEFLNDGPKPGQSRFUIFSS-SLKFVPK 106
>gi|42661748|ref|XP_372728.2| similar to HSPC270 [Homo sapiens]
Length = 418
Score = 33.9 bits (76), Expect = 0.16
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 226 PPFSG--TYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSE 354
P F G + N+ E G+Y C C LF S KY WP F++
Sbjct: 42 PRFFGGKVFQNHFEPGVYMCAKCGYELFPSRSKYTYSFPWPVFTK 86
>gi|41149782|ref|XP_373522.1| hypothetical protein XP_378334 [Homo
sapiens]
Length = 91
Score = 31.2 bits (69), Expect = 1.0
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 463 ELRTACRQPPCELFPARCPHVSGSLCHSHQSQMCREPQKMKAIQCQS 323
+L T+C PP P R P S + H H +MCR + Q +S
Sbjct: 33 DLLTSCPSPPA--VPTRSPRFSSAHNHGHSPRMCRTLRDHLEFQLES 77
>gi|13435397|ref|NP_077084.1| PHD finger protein 1 isoform b [Homo
sapiens]
Length = 567
Score = 30.4 bits (67), Expect = 1.7
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 161 LERNGSRFVRDPASPVPTFGLRPPL 87
L R+G+ + DPASP PT G RP L
Sbjct: 7 LSRSGASSLWDPASPAPTSGPRPRL 31
>gi|4505777|ref|NP_002627.1| PHD finger protein 1 isoform a [Homo
sapiens]
Length = 457
Score = 30.4 bits (67), Expect = 1.7
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 161 LERNGSRFVRDPASPVPTFGLRPPL 87
L R+G+ + DPASP PT G RP L
Sbjct: 7 LSRSGASSLWDPASPAPTSGPRPRL 31
>gi|42661349|ref|XP_378738.1| hypothetical protein XP_378738 [Homo
sapiens]
Length = 113
Score = 29.6 bits (65), Expect = 3.0
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -2
Query: 218 PFSLVTWNCSGVSFFCHSLLERNGSRFVRDPASPVPTFGLRPPLSARPHTARESTS 51
P S + +G SLL++ GS V + S +P L P S PH+A +STS
Sbjct: 48 PPSCIPTGPAGGGQLLGSLLKQTGSHSVAEAGSQLPAT-LNSPSSNSPHSAFQSTS 102
>gi|23510283|ref|NP_060561.3| elongation protein 3 homolog [Homo
sapiens]
Length = 547
Score = 29.3 bits (64), Expect = 3.9
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 14/53 (26%)
Frame = -3
Query: 421 PARCPHVS--GSLC------------HSHQSQMCREPQKMKAIQCQSSTFSQS 305
P RCPH+S G++C +S QS EP M+AI+ + F Q+
Sbjct: 96 PHRCPHISFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPFLQT 148
>gi|4507961|ref|NP_003398.1| zinc finger protein 36, C3H type,
homolog; G0S24; zinc finger protein homologous to Zfp-36
in mouse; Zinc finger protein, C3H type, 36 homolog
(mouse); tristetraprolin [Homo sapiens]
Length = 326
Score = 28.9 bits (63), Expect = 5.0
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Frame = -3
Query: 484 QETHGQGELRTACRQPP-----CELF--PARCPHVSGSLCH 383
Q HG GELR A R P C F RCP+ GS CH
Sbjct: 125 QFAHGLGELRQANRHPKYKTELCHKFYLQGRCPY--GSRCH 163
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Apr 12, 2004 5:34 AM
Number of letters in database: 13,743,509
Number of sequences in database: 27,437
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 13,743,509
effective HSP length: 100
effective length of database: 10,999,809
effective search space used: 2232961227
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20040204C-002151 (20040204C-002151) 20040204C-002151
(912 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,199 sequences; 11,906,519 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|21313208|ref|NP_083895.1| pilin-like transcription factor [Mu... 273 8e-74
Alignment gi|28893017|ref|NP_796066.1| RIKEN cDNA D430026P16 gene [Mus mus... 141 5e-34
Alignment gi|7305479|ref|NP_038787.1| selenoprotein R [Mus musculus] 45 6e-05
Alignment gi|22122409|ref|NP_666082.1| cDNA sequence BC016188; hypothetica... 33 0.23
Alignment gi|31982382|ref|NP_038891.3| Bcl2-associated athanogene 3; Bcl-2... 32 0.66
Alignment gi|38087386|ref|XP_204272.3| RIKEN cDNA 2610020H08 [Mus musculus] 30 1.5
Alignment gi|38086346|ref|XP_285657.2| similar to ERF-2 [Mus musculus] 30 1.5
Alignment gi|33469023|ref|NP_083087.1| elongation protein 3 homolog [Mus m... 29 3.3
Alignment gi|6756059|ref|NP_035886.1| zinc finger protein 36; tristetrapro... 29 4.3
Alignment gi|38090446|ref|XP_137024.2| similar to makorin, ring finger pro... 29 4.3
>gi|21313208|ref|NP_083895.1| pilin-like transcription factor [Mus
musculus]
Length = 175
Score = 273 bits (699), Expect = 8e-74
Identities = 134/181 (74%), Positives = 145/181 (80%)
Frame = +1
Query: 10 MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP 189
MAR RA GLP + R G A +G + D GSLTK + LS+++WQKKLTP
Sbjct: 1 MARLLRALRGLPLLQAPGRLARGCAGSG-------SKDTGSLTKSKRSLSEADWQKKLTP 53
Query: 190 EQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 369
EQF+VTREKGTE PFSG YLNNKE GMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA+G+
Sbjct: 54 EQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAYGSK 113
Query: 370 GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR 549
GSDES TGILRR+DTSLG R EVVCKQCEAHLGHVFPDGP PTGQRFCINSVALKFKP
Sbjct: 114 GSDESHTGILRRLDTSLGCPRMEVVCKQCEAHLGHVFPDGPKPTGQRFCINSVALKFKPS 173
Query: 550 K 552
K
Sbjct: 174 K 174
>gi|28893017|ref|NP_796066.1| RIKEN cDNA D430026P16 gene [Mus
musculus]
Length = 186
Score = 141 bits (356), Expect = 5e-34
Identities = 65/130 (50%), Positives = 86/130 (66%)
Frame = +1
Query: 157 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 336
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 337 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 516
WP+F + + + +D D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPAFHDVISSEAIEFTD-------DFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 517 INSVALKFKP 546
INS +L F P
Sbjct: 152 INSASLSFTP 161
>gi|7305479|ref|NP_038787.1| selenoprotein R [Mus musculus]
Length = 116
Score = 45.1 bits (105), Expect = 6e-05
Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Frame = +1
Query: 244 YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA-HGTSGSDESDTGILRRVDTSL 420
+ N+ E G+Y C C LFSS KY + WP+F+E H S + +
Sbjct: 12 FQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDS---------VTKCPEKN 62
Query: 421 GTARTEVVCKQCEAHLGHVF-PDGPGPTGQRF-CINSVALKFKPR 549
+V C +C LGH F DGP RF +S +LKF P+
Sbjct: 63 RPEALKVSCGKCGNGLGHEFLNDGPKRGQSRFUIFSS-SLKFVPK 106
>gi|22122409|ref|NP_666082.1| cDNA sequence BC016188; hypothetical
protein MGC27560 [Mus musculus]
Length = 595
Score = 33.1 bits (74), Expect = 0.23
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = +1
Query: 289 DSPLFSSEKKYCSGTGWPSFSEAHGTSG--SDESDTGILRRVDTSLGTARTEVVCKQ--C 456
DSP F + K C G F A T G + G L + D LGTA+ ++ + C
Sbjct: 351 DSPEFKEQFKLCINRGHRGFRRAIQTKGIKFEVVHKGGLFKTDRVLGTAQLKLGTLETAC 410
Query: 457 EAHLGHVFPDGPGPTGQR 510
E H DG PTG R
Sbjct: 411 EVHEILEVLDGRRPTGGR 428
>gi|31982382|ref|NP_038891.3| Bcl2-associated athanogene 3;
Bcl-2-interacting death supressor [Mus musculus]
Length = 577
Score = 31.6 bits (70), Expect = 0.66
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 68 QCGVVPTMAASARRSEPETQGPLQSVSRSSPRVSGKRS*LQSNSTSREKKGQNRLSVG 241
QCG +P A +A P GP +S S ++ S S S+ R G ++L G
Sbjct: 153 QCGQMPATATTAAAQPPTAHGPERSQSPAASDCSSSSSSASLPSSGRSSLGSHQLPRG 210
>gi|38087386|ref|XP_204272.3| RIKEN cDNA 2610020H08 [Mus musculus]
Length = 445
Score = 30.4 bits (67), Expect = 1.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 295 PLFSSEKKYCSGTGWPSFSEAHGTSGSDESDTGILRRVDTSLG 423
PLF+ E K T W S + S + + G L++V +SLG
Sbjct: 279 PLFAEEMKNSMKTKWTQMSTVYAGPFSKDCNVGALKKVFSSLG 321
>gi|38086346|ref|XP_285657.2| similar to ERF-2 [Mus musculus]
Length = 464
Score = 30.4 bits (67), Expect = 1.5
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Frame = -3
Query: 484 QETHGQGELRTACRQP-----PCELFPA--RCPHVSGSLCHSHQSQMCREPQKMKAIQCQ 326
Q HG ELRT R P PC F + CP+ G+ CH +Q ++P ++ +
Sbjct: 144 QFAHGYRELRTLSRHPKYKTEPCRTFHSVGFCPY--GTRCHFIHNQPEQQPVLSESTLEE 201
Query: 325 SSTFSQS 305
S+F+ S
Sbjct: 202 PSSFNGS 208
>gi|33469023|ref|NP_083087.1| elongation protein 3 homolog [Mus
musculus]
Length = 547
Score = 29.3 bits (64), Expect = 3.3
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 14/53 (26%)
Frame = -3
Query: 421 PARCPHVS--GSLC------------HSHQSQMCREPQKMKAIQCQSSTFSQS 305
P RCPH+S G++C +S QS EP M+AI+ + F Q+
Sbjct: 96 PHRCPHISFTGNICIYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPFLQT 148
>gi|6756059|ref|NP_035886.1| zinc finger protein 36; tristetraprolin
[Mus musculus]
Length = 319
Score = 28.9 bits (63), Expect = 4.3
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Frame = -3
Query: 484 QETHGQGELRTACRQPP-----CELF--PARCPHVSGSLCH 383
Q HG GELR A R P C F RCP+ GS CH
Sbjct: 117 QFAHGLGELRQANRHPKYKTELCHKFYLQGRCPY--GSRCH 155
>gi|38090446|ref|XP_137024.2| similar to makorin, ring finger
protein, 2; Makorin RING zinc-finger protein 2 [Mus
musculus]
Length = 414
Score = 28.9 bits (63), Expect = 4.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 97 GRHCRHDPTLPARAPLGRVSPGP 29
G HCR+D T P A G V P P
Sbjct: 48 GAHCRYDHTKPPTAAGGAVGPAP 70
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Apr 12, 2004 5:36 AM
Number of letters in database: 11,906,519
Number of sequences in database: 26,199
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 11,906,519
effective HSP length: 99
effective length of database: 9,312,818
effective search space used: 1899814872
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)