Search to RefSeq (Human) database
Query= 20040204C-002677 (20040204C-002677) 20040204C-002677
(840 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
27,437 sequences; 13,743,509 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|14249614|ref|NP_116261.1| NADPH oxidase-related, C2 domain-co... 230 3e-66
Alignment gi|15011902|ref|NP_116561.1| synaptotagmin-like 2 isoform a; chr... 90 2e-18
Alignment gi|21359818|ref|NP_055880.1| exophilin 5 [Homo sapiens] 48 9e-06
Alignment gi|18152767|ref|NP_542775.1| synaptotagmin-like 4 (granuphilin-a... 45 5e-05
Alignment gi|20270305|ref|NP_620135.1| synaptotagmin-like 5 [Homo sapiens] 45 8e-05
Alignment gi|23308603|ref|NP_056275.1| myosin VIIA and Rab interacting pro... 41 9e-04
Alignment gi|18641352|ref|NP_001847.2| alpha 1 type XVI collagen precursor... 41 0.001
Alignment gi|13435125|ref|NP_001835.2| alpha 1 type II collagen isoform 1;... 40 0.002
Alignment gi|15149479|ref|NP_149162.1| alpha 1 type II collagen isoform 2,... 40 0.002
Alignment gi|4502955|ref|NP_000486.1| alpha 5 type IV collagen isoform 1, ... 40 0.003
>gi|14249614|ref|NP_116261.1| NADPH oxidase-related, C2
domain-containing protein [Homo sapiens]
Length = 550
Score = 230 bits (587), Expect(2) = 3e-66
Identities = 127/220 (57%), Positives = 147/220 (66%)
Frame = +3
Query: 129 MPQRGHPSQEGLRVLPGLLMAHEPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE 308
MPQRGHPSQEGL LP L MAH P+PE +GLLDLSFLTEEEQEAIA VL+RDA LRQLEE
Sbjct: 1 MPQRGHPSQEGLWALPSLPMAHGPKPETEGLLDLSFLTEEEQEAIAGVLQRDARLRQLEE 60
Query: 309 GRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRGDQARGS 488
GRV KLRAS+ DPGQLKILTGDWFQEARSQRHH+ H GSDLVRAS+RRKK +RGDQA G
Sbjct: 61 GRVSKLRASVADPGQLKILTGDWFQEARSQRHHNAHFGSDLVRASMRRKKSTRGDQAPGH 120
Query: 489 NGXXXXXXXXXXXXXXPRLPIDKAPQESLSEAEGPDFPSPYVPTKASDNXXXXXXXXXXX 668
+ PRL ID+APQE L E E D P ++A ++
Sbjct: 121 DREAEAAVKEKEEGPEPRLTIDEAPQERLRETEASD---PEEASQAQEDPGQGDQQVCAE 177
Query: 669 XXDVQVXXXXXXXXXXXXXSGAEEEPQPRPAQTQEASEIL 788
D ++ SG E+EP+P+ AQT+ AS+IL
Sbjct: 178 EADPEL----------EPASGGEQEPRPQQAQTKAASQIL 207
Score = 40.0 bits (92), Expect(2) = 3e-66
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +1
Query: 790 ENGEEAPGPDPSLDRML 840
ENGEEAPGPDPSLDRML
Sbjct: 208 ENGEEAPGPDPSLDRML 224
>gi|15011902|ref|NP_116561.1| synaptotagmin-like 2 isoform a;
chromosome 11 synaptotagmin [Homo sapiens]
Length = 910
Score = 90.1 bits (222), Expect = 2e-18
Identities = 43/80 (53%), Positives = 62/80 (77%)
Frame = +3
Query: 219 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQ 398
++DLSFLTEEEQEAI +VL+RDA L++ EE RVR L ++D QLK ++G WF EA+++
Sbjct: 1 MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAK 60
Query: 399 RHHHTHLGSDLVRASIRRKK 458
RH G+D++RAS+R+K+
Sbjct: 61 RHRDKIHGADIIRASMRKKR 80
>gi|21359818|ref|NP_055880.1| exophilin 5 [Homo sapiens]
Length = 1989
Score = 47.8 bits (112), Expect = 9e-06
Identities = 22/59 (37%), Positives = 39/59 (66%)
Frame = +3
Query: 225 DLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQR 401
D SFL +EE I +VL+R+ L++ E+ R+ KL+ + D L+ +TG+WF+E + ++
Sbjct: 9 DFSFLNDEEAGKILQVLERNEELQRAEKDRISKLQKTKRDIRWLQGVTGEWFEEIQRKK 67
>gi|18152767|ref|NP_542775.1| synaptotagmin-like 4 (granuphilin-a);
granuphilin-a [Homo sapiens]
Length = 671
Score = 45.4 bits (106), Expect = 5e-05
Identities = 21/40 (52%), Positives = 31/40 (77%)
Frame = +3
Query: 219 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASL 338
LLDLSFL+EEE++ I VL+RD +R+ +E R+R+L+ L
Sbjct: 4 LLDLSFLSEEEKDLILSVLQRDEEVRKADEKRIRRLKNEL 43
Score = 31.2 bits (69), Expect = 0.89
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 351 QLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRK 455
+LK TGDWF + + R + GS+++R S+R K
Sbjct: 110 ELKKATGDWFYDQKVNRFAY-RTGSEIIRMSLRHK 143
>gi|20270305|ref|NP_620135.1| synaptotagmin-like 5 [Homo sapiens]
Length = 730
Score = 44.7 bits (104), Expect = 8e-05
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Frame = +3
Query: 222 LDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEA-RSQ 398
++LSFL + E+E I VLKRD +L+++E+ R+RKL+ L + K +G QEA R
Sbjct: 8 INLSFLLDHEKEMILGVLKRDEYLKKVEDKRIRKLKNELL---EAKRRSGKTQQEASRVC 64
Query: 399 RHHHTHLG 422
H H +LG
Sbjct: 65 VHCHRNLG 72
Score = 37.0 bits (84), Expect = 0.016
Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Frame = +3
Query: 351 QLKILTGDWFQEARSQRHHHTH-LGSDLVRASI-RRKKGSRGDQAR 482
QL+I+TG+WF E +++R + LG+D+VR SI RR G+ Q++
Sbjct: 111 QLRIITGEWFFEEKAKRFKQVNVLGTDVVRQSILRRSPGAEEVQSQ 156
>gi|23308603|ref|NP_056275.1| myosin VIIA and Rab interacting
protein; rab effector MYRIP; Slp homologue lacking C2
domains; synaptotagmin-like protein homologue lacking C2
domains-c; exophilin; exophilin 8 [Homo sapiens]
Length = 859
Score = 41.2 bits (95), Expect = 9e-04
Identities = 19/43 (44%), Positives = 32/43 (74%)
Frame = +3
Query: 222 LDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPG 350
LDLS LT++E E + +V++RD +LR+ EE R+ +L+ L++ G
Sbjct: 5 LDLSGLTDDETEHVLQVVQRDFNLRKKEEERLSELKQKLDEEG 47
>gi|18641352|ref|NP_001847.2| alpha 1 type XVI collagen precursor;
collagen XVI, alpha-1 polypeptide [Homo sapiens]
Length = 1603
Score = 40.8 bits (94), Expect = 0.001
Identities = 40/120 (33%), Positives = 44/120 (36%), Gaps = 2/120 (1%)
Frame = +2
Query: 32 LPGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*ARA*G 211
LPG PG P P I P G D +G P RG PGPA PP
Sbjct: 1195 LPGSPGPP--GPPGIQGP--------AGLDGLDGKDGKPGLRGDPGPAGPP--------- 1235
Query: 212 *WVTGPQLPDGGGTGSH--C*GPEARCPPTAAGGGTGQKAPGITGRPWAAEDPNRGLVPG 385
+ GP P G H GP+ C G TG+ PG G P A R PG
Sbjct: 1236 -GLMGP--PGFKGKTGHPGLPGPKGDCGKPGPPGSTGR--PGAEGEPGAMGPQGRPGPPG 1290
Score = 37.4 bits (85), Expect = 0.012
Identities = 39/117 (33%), Positives = 47/117 (40%), Gaps = 4/117 (3%)
Frame = +2
Query: 35 PGEPGLP-YEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*ARA*G 211
PG PGLP + +P PR P G T A +G P +GA GP PP G
Sbjct: 795 PGAPGLPGIQGLPG-------PRGPPGPTGEKGA-QGSPGVKGATGPVGPP--------G 838
Query: 212 *WVTGPQLPDG--GGTGSHC*GPEARCPPTAAGGGTGQKAP-GITGRPWAAEDPNRG 373
V+GP DG G TG G G+K P G G P P++G
Sbjct: 839 ASVSGPPGRDGQQGQTGLR--------------GTPGEKGPRGEKGEPGECSCPSQG 881
Score = 33.9 bits (76), Expect = 0.14
Identities = 39/126 (30%), Positives = 48/126 (38%), Gaps = 8/126 (6%)
Frame = +2
Query: 35 PGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWP--PHGT*ARA* 208
PG+PG P P L + R +G P GPP S G PGP P P G
Sbjct: 1085 PGQPGYPGATGPPGLPGIKGERGYTGSAGEKGEP-GPPGSEGLPGPPGPAGPRGE----- 1138
Query: 209 G*WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQ-KAPGITGRPWAAEDPNRGL--- 376
GPQ G G PT + G G+ +PG G AE + G+
Sbjct: 1139 ----RGPQGNSGEKGDQGFQGQPGFTGPTGSPGFPGKVGSPGPPGP--QAEKGSEGIRGP 1192
Query: 377 --VPGS 388
+PGS
Sbjct: 1193 SGLPGS 1198
Score = 32.0 bits (71), Expect = 0.52
Identities = 35/108 (32%), Positives = 40/108 (37%), Gaps = 3/108 (2%)
Frame = +2
Query: 32 LPGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISR---GAPGPAWPPHGT*AR 202
LPG+PG P P P P GT A EGPP + G PGP P +
Sbjct: 1326 LPGQPGPPGHPGP--------PGEP--GTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQK 1375
Query: 203 A*G*WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQKAPGITGRP 346
+P G G GP PP AG APG +G P
Sbjct: 1376 GQAGEKGRAGMPGGPGKSGSM-GPVG--PPGPAGERGHPGAPGPSGSP 1420
Score = 27.7 bits (60), Expect = 9.9
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = +2
Query: 32 LPGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWP 181
LPG PGLP + EGPP RG+PGP P
Sbjct: 1021 LPGPPGLPGQR----------------------GEEGPPGMRGSPGPPGP 1048
>gi|13435125|ref|NP_001835.2| alpha 1 type II collagen isoform 1;
collagen II, alpha-1 polypeptide; cartilage collagen;
chondrocalcin, included; COL11A3, formerly [Homo
sapiens]
Length = 1487
Score = 40.0 bits (92), Expect = 0.002
Identities = 37/123 (30%), Positives = 44/123 (35%), Gaps = 1/123 (0%)
Frame = +2
Query: 23 ETQLPGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*AR 202
E+ PGE G P P L P R G A A +G P G PGP P
Sbjct: 310 ESGSPGENGSPGPMGPRGL-PGERGRTGPAGAAGARGNDGQPGPAGPPGPVGP------- 361
Query: 203 A*G*WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQK-APGITGRPWAAEDPNRGLV 379
GP P G GP P A G G+ PG G A+ +P +
Sbjct: 362 -----AGGPGFPGAPGAKGEA-GPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGI 415
Query: 380 PGS 388
PG+
Sbjct: 416 PGA 418
Score = 34.3 bits (77), Expect = 0.11
Identities = 38/112 (33%), Positives = 41/112 (36%), Gaps = 2/112 (1%)
Frame = +2
Query: 35 PGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*ARA*G* 214
PGE GL + L P PSG A P GP RG PGP P A
Sbjct: 1124 PGERGLKGHRGFTGLQGLPGPPGPSGDQG-ASGPAGPSGPRGPPGPVGPSGKDGANG--- 1179
Query: 215 WVTGPQLPDGGGTGSHC*GPEARCPPTAAG--GGTGQKAPGITGRPWAAEDP 364
+ GP P G S GP PP G G G PGI +A P
Sbjct: 1180 -IPGPIGPPGPRGRSGETGPAG--PPGNPGPPGPPGPPGPGIDMSAFAGLGP 1228
Score = 30.8 bits (68), Expect = 1.2
Identities = 32/103 (31%), Positives = 38/103 (36%), Gaps = 1/103 (0%)
Frame = +2
Query: 23 ETQLPGEPGLPYEAVPSILDPYREPRVP-SGGTAPADAPEGPPISRGAPGPAWPPHGT*A 199
E PGE G P + P P P + G A P GPP ++G PG P A
Sbjct: 700 ERGFPGERGSP--GAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGA 757
Query: 200 RA*G*WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQKAP 328
+ GP+ D G G GPE G TG P
Sbjct: 758 AG----IAGPK-GDRGDVGEK--GPEGAPGKDGGRGLTGPIGP 793
Score = 30.8 bits (68), Expect = 1.2
Identities = 34/111 (30%), Positives = 40/111 (36%), Gaps = 7/111 (6%)
Frame = +2
Query: 35 PGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*ARA*G* 214
PG G P+ + R R GG P GPP RGAPG P
Sbjct: 473 PGPAGPQGAPGPAGEEGKRGARGEPGGVGPI----GPPGERGAPGNRGFPGQD------- 521
Query: 215 WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQK-------APGITGRP 346
+ GP+ G G GP P A G G+ A G+TGRP
Sbjct: 522 GLAGPK----GAPGER--GPSGLAGPKGANGDPGRPGEPGLPGARGLTGRP 566
Score = 30.4 bits (67), Expect = 1.5
Identities = 38/115 (33%), Positives = 42/115 (36%), Gaps = 1/115 (0%)
Frame = +2
Query: 35 PGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*ARA*G* 214
PG G P P D + G T AP G P G+PGPA P
Sbjct: 1034 PGREGSPGADGPPGRDGAAGVKGDRGETGAVGAP-GAPGPPGSPGPAGP----------- 1081
Query: 215 WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQKAP-GITGRPWAAEDPNRGL 376
TG Q D G G+ GP P A G G + P G G A E RGL
Sbjct: 1082 --TGKQ-GDRGEAGAQ--GPMGPSGPAGARGIQGPQGPRGDKGE--AGEPGERGL 1129
Score = 30.0 bits (66), Expect = 2.0
Identities = 43/137 (31%), Positives = 46/137 (33%), Gaps = 26/137 (18%)
Frame = +2
Query: 38 GEPGLPYEAVPSILDPYREPRVPSG-----GTAPADAPEGPPISRGAPGPAWP-----PH 187
G PG P PS D + R SG G P GPP +G PG P P
Sbjct: 912 GNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPP 971
Query: 188 GT*ARA*G*WVTG----------PQLPDGGGTGSHC*GPEA---RCPPTAAG--GGTGQK 322
G A + G P LP G P A R PP G G TG
Sbjct: 972 GPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPA 1031
Query: 323 A-PGITGRPWAAEDPNR 370
PG G P A P R
Sbjct: 1032 GEPGREGSPGADGPPGR 1048
Score = 28.9 bits (63), Expect = 4.4
Identities = 23/69 (33%), Positives = 23/69 (33%)
Frame = +2
Query: 140 GPPISRGAPGPAWPPHGT*ARA*G*WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQ 319
GPP S G PGP PP GP DG GP R G G
Sbjct: 906 GPPGSNGNPGPPGPP-------------GPSGKDGPKGARGDSGPPGRAGEPGLQGPAG- 951
Query: 320 KAPGITGRP 346
PG G P
Sbjct: 952 -PPGEKGEP 959
Score = 28.5 bits (62), Expect = 5.8
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Frame = +2
Query: 113 GTAPADAPEGPPISRGAPGPAWPPHGT*ARA*G*WVTGPQLPDG-----GGTGSHC*GPE 277
G A A P+GP GAPGP P VTGP+ G G TG G
Sbjct: 858 GDAGAPGPQGP---SGAPGPQGPT----------GVTGPKGARGAQGPPGATGFP--GAA 902
Query: 278 ARCPPTAAGGGTGQKAP 328
R P + G G P
Sbjct: 903 GRVGPPGSNGNPGPPGP 919
Score = 28.1 bits (61), Expect = 7.6
Identities = 41/138 (29%), Positives = 49/138 (35%), Gaps = 17/138 (12%)
Frame = +2
Query: 23 ETQLPGEPGL---PYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPP--- 184
E LPG PGL P + + P P+G AP GP +G PGP PP
Sbjct: 619 EKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAP-GPSGFQGLPGPPGPPGEG 677
Query: 185 -----HGT*ARA*G*WVTGPQLPDG--GGTGSHC*GPEARCPPTAAGGGTGQKAP----G 331
G A + GP+ G G GS G + P G G P G
Sbjct: 678 GKPGDQGVPGEAGAPGLVGPRGERGFPGERGSP--GAQGLQGPRGLPGTPGTDGPKGASG 735
Query: 332 ITGRPWAAEDPNRGLVPG 385
G P A P +PG
Sbjct: 736 PAGPPGAQGPPGLQGMPG 753
>gi|15149479|ref|NP_149162.1| alpha 1 type II collagen isoform 2,
preproprotein; collagen II, alpha-1 polypeptide;
cartilage collagen; chondrocalcin, included; COL11A3,
formerly [Homo sapiens]
Length = 1418
Score = 40.0 bits (92), Expect = 0.002
Identities = 37/123 (30%), Positives = 44/123 (35%), Gaps = 1/123 (0%)
Frame = +2
Query: 23 ETQLPGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*AR 202
E+ PGE G P P L P R G A A +G P G PGP P
Sbjct: 241 ESGSPGENGSPGPMGPRGL-PGERGRTGPAGAAGARGNDGQPGPAGPPGPVGP------- 292
Query: 203 A*G*WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQK-APGITGRPWAAEDPNRGLV 379
GP P G GP P A G G+ PG G A+ +P +
Sbjct: 293 -----AGGPGFPGAPGAKGEA-GPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGI 346
Query: 380 PGS 388
PG+
Sbjct: 347 PGA 349
Score = 34.3 bits (77), Expect = 0.11
Identities = 38/112 (33%), Positives = 41/112 (36%), Gaps = 2/112 (1%)
Frame = +2
Query: 35 PGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*ARA*G* 214
PGE GL + L P PSG A P GP RG PGP P A
Sbjct: 1055 PGERGLKGHRGFTGLQGLPGPPGPSGDQG-ASGPAGPSGPRGPPGPVGPSGKDGANG--- 1110
Query: 215 WVTGPQLPDGGGTGSHC*GPEARCPPTAAG--GGTGQKAPGITGRPWAAEDP 364
+ GP P G S GP PP G G G PGI +A P
Sbjct: 1111 -IPGPIGPPGPRGRSGETGPAG--PPGNPGPPGPPGPPGPGIDMSAFAGLGP 1159
Score = 30.8 bits (68), Expect = 1.2
Identities = 32/103 (31%), Positives = 38/103 (36%), Gaps = 1/103 (0%)
Frame = +2
Query: 23 ETQLPGEPGLPYEAVPSILDPYREPRVP-SGGTAPADAPEGPPISRGAPGPAWPPHGT*A 199
E PGE G P + P P P + G A P GPP ++G PG P A
Sbjct: 631 ERGFPGERGSP--GAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGA 688
Query: 200 RA*G*WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQKAP 328
+ GP+ D G G GPE G TG P
Sbjct: 689 AG----IAGPK-GDRGDVGEK--GPEGAPGKDGGRGLTGPIGP 724
Score = 30.8 bits (68), Expect = 1.2
Identities = 34/111 (30%), Positives = 40/111 (36%), Gaps = 7/111 (6%)
Frame = +2
Query: 35 PGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*ARA*G* 214
PG G P+ + R R GG P GPP RGAPG P
Sbjct: 404 PGPAGPQGAPGPAGEEGKRGARGEPGGVGPI----GPPGERGAPGNRGFPGQD------- 452
Query: 215 WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQK-------APGITGRP 346
+ GP+ G G GP P A G G+ A G+TGRP
Sbjct: 453 GLAGPK----GAPGER--GPSGLAGPKGANGDPGRPGEPGLPGARGLTGRP 497
Score = 30.4 bits (67), Expect = 1.5
Identities = 38/115 (33%), Positives = 42/115 (36%), Gaps = 1/115 (0%)
Frame = +2
Query: 35 PGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*ARA*G* 214
PG G P P D + G T AP G P G+PGPA P
Sbjct: 965 PGREGSPGADGPPGRDGAAGVKGDRGETGAVGAP-GAPGPPGSPGPAGP----------- 1012
Query: 215 WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQKAP-GITGRPWAAEDPNRGL 376
TG Q D G G+ GP P A G G + P G G A E RGL
Sbjct: 1013 --TGKQ-GDRGEAGAQ--GPMGPSGPAGARGIQGPQGPRGDKGE--AGEPGERGL 1060
Score = 30.0 bits (66), Expect = 2.0
Identities = 43/137 (31%), Positives = 46/137 (33%), Gaps = 26/137 (18%)
Frame = +2
Query: 38 GEPGLPYEAVPSILDPYREPRVPSG-----GTAPADAPEGPPISRGAPGPAWP-----PH 187
G PG P PS D + R SG G P GPP +G PG P P
Sbjct: 843 GNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPP 902
Query: 188 GT*ARA*G*WVTG----------PQLPDGGGTGSHC*GPEA---RCPPTAAG--GGTGQK 322
G A + G P LP G P A R PP G G TG
Sbjct: 903 GPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPA 962
Query: 323 A-PGITGRPWAAEDPNR 370
PG G P A P R
Sbjct: 963 GEPGREGSPGADGPPGR 979
Score = 28.9 bits (63), Expect = 4.4
Identities = 23/69 (33%), Positives = 23/69 (33%)
Frame = +2
Query: 140 GPPISRGAPGPAWPPHGT*ARA*G*WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQ 319
GPP S G PGP PP GP DG GP R G G
Sbjct: 837 GPPGSNGNPGPPGPP-------------GPSGKDGPKGARGDSGPPGRAGEPGLQGPAG- 882
Query: 320 KAPGITGRP 346
PG G P
Sbjct: 883 -PPGEKGEP 890
Score = 28.5 bits (62), Expect = 5.8
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Frame = +2
Query: 113 GTAPADAPEGPPISRGAPGPAWPPHGT*ARA*G*WVTGPQLPDG-----GGTGSHC*GPE 277
G A A P+GP GAPGP P VTGP+ G G TG G
Sbjct: 789 GDAGAPGPQGP---SGAPGPQGPT----------GVTGPKGARGAQGPPGATGFP--GAA 833
Query: 278 ARCPPTAAGGGTGQKAP 328
R P + G G P
Sbjct: 834 GRVGPPGSNGNPGPPGP 850
Score = 28.1 bits (61), Expect = 7.6
Identities = 41/138 (29%), Positives = 49/138 (35%), Gaps = 17/138 (12%)
Frame = +2
Query: 23 ETQLPGEPGL---PYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPP--- 184
E LPG PGL P + + P P+G AP GP +G PGP PP
Sbjct: 550 EKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAP-GPSGFQGLPGPPGPPGEG 608
Query: 185 -----HGT*ARA*G*WVTGPQLPDG--GGTGSHC*GPEARCPPTAAGGGTGQKAP----G 331
G A + GP+ G G GS G + P G G P G
Sbjct: 609 GKPGDQGVPGEAGAPGLVGPRGERGFPGERGSP--GAQGLQGPRGLPGTPGTDGPKGASG 666
Query: 332 ITGRPWAAEDPNRGLVPG 385
G P A P +PG
Sbjct: 667 PAGPPGAQGPPGLQGMPG 684
>gi|4502955|ref|NP_000486.1| alpha 5 type IV collagen isoform 1,
precursor; collagen IV, alpha-5 polypeptide; collagen of
basement membrane, alpha-5 chain [Homo sapiens]
Length = 1685
Score = 39.7 bits (91), Expect = 0.003
Identities = 33/115 (28%), Positives = 38/115 (33%), Gaps = 10/115 (8%)
Frame = +2
Query: 32 LPGEPGLP-------YEAVPSILDPYREPRVPSG---GTAPADAPEGPPISRGAPGPAWP 181
+PG PGLP + P + P P P G P+GPP G PGP P
Sbjct: 1212 IPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGLPGPEGP 1271
Query: 182 PHGT*ARA*G*WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQKAPGITGRP 346
P LP GG P P G Q PG+ G P
Sbjct: 1272 ---------------PGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNP 1311
Score = 35.4 bits (80), Expect = 0.047
Identities = 40/117 (34%), Positives = 46/117 (39%), Gaps = 12/117 (10%)
Frame = +2
Query: 32 LPGEPGLPYE-AVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*ARA* 208
LPG+PGLP + +P I EP +P G P+G P G PG GT R
Sbjct: 679 LPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAP----GTPGRI- 733
Query: 209 G*WVTGPQLPDG-----GGTGSHC*GPEARCPPTAAG--GGTGQKA----PGITGRP 346
+ GP P G G G GP PP G G G K PG G P
Sbjct: 734 --GLEGPPGPPGFPGPKGEPGFALPGPPG--PPGLPGFKGALGPKGDRGFPGPPGPP 786
Score = 34.3 bits (77), Expect = 0.11
Identities = 36/118 (30%), Positives = 42/118 (35%), Gaps = 2/118 (1%)
Frame = +2
Query: 38 GEPGLP-YEAVPSILDPYREPRVPS-GGTAPADAPEGPPISRGAPGPAWPPHGT*ARA*G 211
GEPGLP Y P I +P +P GT A G P G PGP P
Sbjct: 1083 GEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPK--------- 1133
Query: 212 *WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQKAPGITGRPWAAEDPNRGLVPG 385
++GP P G P GGG PG G P P + +PG
Sbjct: 1134 -GISGP--PGNPGLPGE--------PGPVGGGG----HPGQPGPPGEKGKPGQDGIPG 1176
Score = 30.8 bits (68), Expect = 1.2
Identities = 39/117 (33%), Positives = 45/117 (38%)
Frame = +2
Query: 35 PGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*ARA*G* 214
PG G P A+P P P +P G A P+G RG PGP PP T
Sbjct: 745 PGPKGEPGFALPG---PPGPPGLP--GFKGALGPKG---DRGFPGPPGPPGRTGLDG--- 793
Query: 215 WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQKAPGITGRPWAAEDPNRGLVPG 385
+ GP+ D G G P PP G G Q PG G P P +PG
Sbjct: 794 -LPGPK-GDVGPNGQ----PGPMGPPGLPGIGV-QGPPGPPGIPGPIGQPGLHGIPG 843
Score = 30.4 bits (67), Expect = 1.5
Identities = 35/123 (28%), Positives = 39/123 (31%), Gaps = 17/123 (13%)
Frame = +2
Query: 5 TALLLPETQLPGEPGLPYE----AVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGP 172
T + + E G PGLP E P I P P P P G P RG G
Sbjct: 351 TGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGD 410
Query: 173 AWPPHGT*ARA*G*WVTGPQLPDG-----------GGTGSHC*GPEARCPPTAAG--GGT 313
PP G + GP DG G G H + C P G G
Sbjct: 411 EGPP--------GISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSP 462
Query: 314 GQK 322
G K
Sbjct: 463 GDK 465
Score = 30.0 bits (66), Expect = 2.0
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +2
Query: 35 PGEPGLPYEAVPSIL--DPYREPRVPSG-GTAPADAPEGPPISRGAPGPAWPP 184
PG PGLP + SI+ P +P G P+GP +G PGP PP
Sbjct: 1356 PGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGP---QGLPGPTGPP 1405
Score = 28.9 bits (63), Expect = 4.4
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +2
Query: 38 GEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPG 169
G+ GLP + P R P P GG +G P RG PG
Sbjct: 258 GDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPG 301
Score = 28.5 bits (62), Expect = 5.8
Identities = 39/123 (31%), Positives = 48/123 (39%), Gaps = 18/123 (14%)
Frame = +2
Query: 32 LPGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGP------------- 172
+ G+PGLP VP + + PSG A PEG P G PGP
Sbjct: 1319 MKGDPGLP--GVPG----FPGMKGPSGVPGSA-GPEGEPGLIGPPGPPGLPGPSGQSIII 1371
Query: 173 ---AWPPHGT*ARA*G*WVTGPQLPDG--GGTGSHC*GPEARCPPTAAGGGTGQKAPGIT 337
A PP G + + GPQ P G G TG P P G G + PG+
Sbjct: 1372 KGDAGPP-GIPGQPGLKGLPGPQGPQGLPGPTGPPG-DPGRNGLPGFDGAGGRKGDPGLP 1429
Query: 338 GRP 346
G+P
Sbjct: 1430 GQP 1432
Score = 28.1 bits (61), Expect = 7.6
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +2
Query: 38 GEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPA 175
G+PG P VP P +P A P GPP S G PG A
Sbjct: 846 GDPGPPGLDVPGPPGERGSPGIPG-----APGPIGPPGSPGLPGKA 886
Score = 27.7 bits (60), Expect = 9.9
Identities = 32/108 (29%), Positives = 35/108 (32%), Gaps = 4/108 (3%)
Frame = +2
Query: 35 PGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*ARA*G* 214
PG PGLP EP GG P GPP +G PG P +
Sbjct: 1139 PGNPGLP-----------GEPGPVGGGGHPGQ--PGPPGEKGKPGQDGIPGPAGQKG--- 1182
Query: 215 WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQKA----PGITGRP 346
P P G G P G +GQK PGI G P
Sbjct: 1183 ---EPGQPGFGNPG-----------PPGLPGLSGQKGDGGLPGIPGNP 1216
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Apr 12, 2004 5:34 AM
Number of letters in database: 13,743,509
Number of sequences in database: 27,437
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 13,743,509
effective HSP length: 100
effective length of database: 10,999,809
effective search space used: 1968965811
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20040204C-002677 (20040204C-002677) 20040204C-002677
(840 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,199 sequences; 11,906,519 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|13878229|ref|NP_113570.1| synaptotagmin-like 1 [Mus musculus] 229 3e-64
Alignment gi|13878231|ref|NP_113571.1| synaptotagmin-like 2 [Mus musculus] 91 6e-19
Alignment gi|28849901|ref|NP_789816.1| synaptotagmin-like homologue lackin... 50 1e-06
Alignment gi|29244488|ref|NP_808372.1| synaptotagmin-like 5 [Mus musculus] 44 9e-05
Alignment gi|33468851|ref|NP_031762.1| procollagen, type IV, alpha 5 [Mus ... 43 3e-04
Alignment gi|7305099|ref|NP_038785.1| synaptotagmin-like 4; granuphilin; g... 42 3e-04
Alignment gi|13624305|ref|NP_112440.1| procollagen, type II, alpha 1; disp... 41 0.001
Alignment gi|41054950|ref|NP_955767.1| procollagen, type VIII, alpha 2; en... 41 0.001
Alignment gi|30410760|ref|NP_082542.2| procollagen, type XVI, alpha 1; [a]... 39 0.003
Alignment gi|38077494|ref|XP_193814.2| RIKEN cDNA 2310067L16 [Mus musculus] 39 0.004
>gi|13878229|ref|NP_113570.1| synaptotagmin-like 1 [Mus musculus]
Length = 567
Score = 229 bits (585), Expect(2) = 3e-64
Identities = 131/226 (57%), Positives = 146/226 (64%), Gaps = 6/226 (2%)
Frame = +3
Query: 129 MPQRGHPSQEGLRVLPGLLMAHEPEPEADGLLDLSFLTEEEQEAIAEVLKRDAHLRQLEE 308
MPQRGHPSQE L LP L MAH P E +GLLDLSFLTEEEQEAI++VLKRDAHLRQLEE
Sbjct: 1 MPQRGHPSQERLWALPSLPMAHGPGSEVEGLLDLSFLTEEEQEAISDVLKRDAHLRQLEE 60
Query: 309 GRVRKLRASLEDPGQLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRGDQARGS 488
GRV KLRASLEDP QLKILTGDWFQEARSQRHHH H GSDLVRASIRRKK +GDQA GS
Sbjct: 61 GRVSKLRASLEDPWQLKILTGDWFQEARSQRHHHAHFGSDLVRASIRRKKSPKGDQALGS 120
Query: 489 NGXXXXXXXXXXXXX-XPRLPIDKAPQESLSEAEGPDFPSPYVPTKASDN-----XXXXX 650
+G R+ I+ A E +E +GPD SPYVP+KAS+
Sbjct: 121 DGEAEAAGEDTIEGEPESRVSIEVAAPERSTETQGPDLSSPYVPSKASEGQEEEPQDQEC 180
Query: 651 XXXXXXXXDVQVXXXXXXXXXXXXXSGAEEEPQPRPAQTQEASEIL 788
VQV AE+E QP PAQ++ S+IL
Sbjct: 181 ELEAPGEGGVQV---AEADPELDPEQKAEQESQPTPAQSKATSKIL 223
Score = 33.9 bits (76), Expect(2) = 3e-64
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +1
Query: 781 KSWENGEEAPGPDPSLDRML 840
K ENGEEAPG PSLDRML
Sbjct: 221 KILENGEEAPGLGPSLDRML 240
>gi|13878231|ref|NP_113571.1| synaptotagmin-like 2 [Mus musculus]
Length = 950
Score = 91.3 bits (225), Expect = 6e-19
Identities = 44/80 (55%), Positives = 62/80 (77%)
Frame = +3
Query: 219 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQ 398
++DLSFLTEEEQ+AI +VL+RDA L++ EE RVR L ++D QLK ++G WF EA+++
Sbjct: 1 MIDLSFLTEEEQDAILKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAK 60
Query: 399 RHHHTHLGSDLVRASIRRKK 458
RH G+D++RAS+RRKK
Sbjct: 61 RHRDKIHGADIIRASMRRKK 80
>gi|28849901|ref|NP_789816.1| synaptotagmin-like homologue lacking
C2 domains b [Mus musculus]
Length = 1960
Score = 50.4 bits (119), Expect = 1e-06
Identities = 24/59 (40%), Positives = 38/59 (64%)
Frame = +3
Query: 225 DLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEARSQR 401
D SFL EEE I +VL+R+ LR+ E+ R+ KL+ + D L+ TG+WF+E + ++
Sbjct: 9 DFSFLNEEEARKILQVLERNEELRRAEKDRISKLQKTKRDIRWLQGATGEWFEEIQRKK 67
>gi|29244488|ref|NP_808372.1| synaptotagmin-like 5 [Mus musculus]
Length = 753
Score = 44.3 bits (103), Expect = 9e-05
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +3
Query: 222 LDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASLEDPGQLKILTGDWFQEA-RSQ 398
++LSFL + E+E I VLKRD +L+++E+ R+RKL+ L + K +G QEA R
Sbjct: 8 INLSFLLDHEKEMILGVLKRDEYLKKVEDKRIRKLKNELL---EAKRRSGKTHQEASRVC 64
Query: 399 RHHHTHLG 422
H H LG
Sbjct: 65 VHCHKTLG 72
>gi|33468851|ref|NP_031762.1| procollagen, type IV, alpha 5 [Mus
musculus]
Length = 1691
Score = 42.7 bits (99), Expect = 3e-04
Identities = 43/128 (33%), Positives = 49/128 (38%), Gaps = 5/128 (3%)
Frame = +2
Query: 23 ETQLPGEPGLPYE-AVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*A 199
E LPG+PGLP + +P IL EP +P G P GPP +G PG PP A
Sbjct: 676 EVGLPGDPGLPGQPGLPGILGSKGEPGIPGIG------PPGPPGPKGFPGIPGPPGAPGA 729
Query: 200 RA*G*WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQKA-PGITGRPWAAED---PN 367
G PDG GP+ P G G PG G P D P
Sbjct: 730 -------PGRMGPDGPPGPPGFPGPKGE-PGFGLPGPPGPPGFPGFKGTPGPKGDRGFPG 781
Query: 368 RGLVPGST 391
PG T
Sbjct: 782 PSGPPGRT 789
Score = 38.9 bits (89), Expect = 0.004
Identities = 37/116 (31%), Positives = 43/116 (37%), Gaps = 11/116 (9%)
Frame = +2
Query: 32 LPGEPGLP-------YEAVPSILDPYREPRVPSG---GTAPADAPEGPPISRGAPGPAWP 181
LPG PGLP ++ P + P P P G P+GPP G PG P
Sbjct: 1212 LPGNPGLPGSKGEPGFQGFPGMPGPPGPPGSPGQALEGPKGNPGPQGPPGRPGPPGFQGP 1271
Query: 182 PHGT*ARA*G*WVTGPQLPDG-GGTGSHC*GPEARCPPTAAGGGTGQKAPGITGRP 346
P GT GP+ P G GG P P G Q PG+ G P
Sbjct: 1272 P-GT---------EGPRGPPGNGGIKGERGNPGPPGQPGLPGLKGDQGPPGLPGNP 1317
Score = 31.6 bits (70), Expect = 0.59
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 14/64 (21%)
Frame = +2
Query: 35 PGEPGLPYEAVPSILDPYREPRVPSG--------------GTAPADAPEGPPISRGAPGP 172
PG PG+ E I+ P P+ G G + P GPP G PGP
Sbjct: 149 PGIPGMKGEPGSIIMSPLPGPKGNQGYPGPPGIQGPPGPKGISGPSGPPGPPGLMGPPGP 208
Query: 173 AWPP 184
PP
Sbjct: 209 PGPP 212
Score = 30.8 bits (68), Expect = 1.0
Identities = 32/109 (29%), Positives = 39/109 (35%), Gaps = 5/109 (4%)
Frame = +2
Query: 35 PGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*ARA*G* 214
PG PGL A + + + + G G P +G PG PP G
Sbjct: 339 PGPPGLVIPAPGTGVTMGEKGNIGLPGLPGEKGERGFPGIQGPPGFPGPP--------GT 390
Query: 215 WVTGPQLPDG-----GGTGSHC*GPEARCPPTAAGGGTGQKAPGITGRP 346
V GP P G G G GP C P + G APG+ G P
Sbjct: 391 AVVGPPGPPGYPGERGQKGDE--GPPGICIPGSPGLDGQPGAPGLPGPP 437
Score = 30.0 bits (66), Expect = 1.7
Identities = 39/137 (28%), Positives = 47/137 (34%), Gaps = 20/137 (14%)
Frame = +2
Query: 35 PGEPGLP-YEAVPSILDP--YREPRVPSGGTA--PADAPEGPPISRGAPGPAWPPHGT*A 199
PG PG P ++ P + P P G T P+G G PGP PP
Sbjct: 759 PGPPGFPGFKGTPGPKGDRGFPGPSGPPGRTGLDGLPGPKGDVGPNGQPGPVGPP----- 813
Query: 200 RA*G*WVTGPQLPDG-----GGTGSHC*GPEARCP----------PTAAGGGTGQKAPGI 334
G + GP P G G G H E P P G APG+
Sbjct: 814 GLPGIGLQGPPGPPGTPGPIGQPGLHGIPGEKGDPGPPGFDVPGLPGERGSPGLPGAPGL 873
Query: 335 TGRPWAAEDPNRGLVPG 385
G P + P + VPG
Sbjct: 874 IGPPGSPGVPGKAGVPG 890
Score = 29.3 bits (64), Expect = 2.9
Identities = 38/129 (29%), Positives = 43/129 (33%), Gaps = 11/129 (8%)
Frame = +2
Query: 35 PGEPGLPY-EAVPSILDP--YREPRVPSG--------GTAPADAPEGPPISRGAPGPAWP 181
PG PGLP + P + P P P G G D P GPP G PG
Sbjct: 999 PGSPGLPGPKGNPGLPGPPGLTGPPGPKGNIGDMGFPGPQGVDGPPGPPGFPGQPGSPGL 1058
Query: 182 PHGT*ARA*G*WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQKAPGITGRPWAAED 361
P G V+G LP G P P G PG+ G P A
Sbjct: 1059 P-GQKGSKGEPGVSGIGLPGLPGPKGEPGLPGYPGNPGIKGSVGETGLPGLPGNPGAKGQ 1117
Query: 362 PNRGLVPGS 388
P PG+
Sbjct: 1118 PGLPGFPGT 1126
Score = 28.5 bits (62), Expect = 5.0
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +2
Query: 35 PGEPGLPYEAVPSIL---DPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPP 184
PG PGLP + SI+ DP P +P G G P +G PGP PP
Sbjct: 1362 PGPPGLPGPSGQSIVIKGDP-GPPGIP--GQPGLKGLPGLPGPQGLPGPIGPP 1411
Score = 28.5 bits (62), Expect = 5.0
Identities = 36/126 (28%), Positives = 43/126 (34%), Gaps = 12/126 (9%)
Frame = +2
Query: 35 PGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*ARA--- 205
PG PG P E P V +GG P GPP +G PG P +
Sbjct: 1139 PGNPGFPGEPGP----------VGAGGRP---GPPGPPGEKGKPGQDGIPGPAGQKGEPG 1185
Query: 206 -*G*WVTGP--------QLPDGGGTGSHC*GPEARCPPTAAGGGTGQKAPGITGRPWAAE 358
G + GP Q DGG G P P + G Q PG+ G P
Sbjct: 1186 QPGFGIPGPPGLPGLSGQKGDGGSPGL----PGNPGLPGSKGEPGFQGFPGMPGPPGPPG 1241
Query: 359 DPNRGL 376
P + L
Sbjct: 1242 SPGQAL 1247
Score = 28.5 bits (62), Expect = 5.0
Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Frame = +2
Query: 5 TALLLPETQLPGEPGLPYE----AVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGP 172
T + + E G PGLP E P I P P P P G P RG G
Sbjct: 351 TGVTMGEKGNIGLPGLPGEKGERGFPGIQGPPGFPGPPGTAVVGPPGPPGYPGERGQKGD 410
Query: 173 AWPP 184
PP
Sbjct: 411 EGPP 414
>gi|7305099|ref|NP_038785.1| synaptotagmin-like 4; granuphilin;
granuphilin-a; granuphilin-b [Mus musculus]
Length = 673
Score = 42.4 bits (98), Expect = 3e-04
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = +3
Query: 219 LLDLSFLTEEEQEAIAEVLKRDAHLRQLEEGRVRKLRASL 338
+LDLSFL+E E++ I VL+RD LR+ +E R+R+L+ L
Sbjct: 4 ILDLSFLSEMERDLILGVLQRDEELRKADEKRIRRLKNEL 43
Score = 32.3 bits (72), Expect = 0.34
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 351 QLKILTGDWFQEARSQRHHHTHLGSDLVRASIRRKKGSRGDQARGSN 491
+LK TGDWF + + R + GS+++R S+R+K + G +
Sbjct: 110 ELKKATGDWFYDQKVNRFDY-RTGSEIIRMSLRQKPAVNKRETAGQS 155
>gi|13624305|ref|NP_112440.1| procollagen, type II, alpha 1;
disproportionate micromelia [Mus musculus]
Length = 1442
Score = 40.8 bits (94), Expect = 0.001
Identities = 37/123 (30%), Positives = 44/123 (35%), Gaps = 1/123 (0%)
Frame = +2
Query: 23 ETQLPGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*AR 202
E+ PGE G P P L P R G A A +G P G PGP P
Sbjct: 265 ESGSPGENGSPGPMGPRGL-PGERGRTGPAGAAGARGNDGQPGPAGPPGPVGP------- 316
Query: 203 A*G*WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQKA-PGITGRPWAAEDPNRGLV 379
GP P G GP P A G G+ PG G A+ +P +
Sbjct: 317 -----AGGPGFPGAPGAKGEA-GPTGARGPEGAQGSRGEPGNPGSPGPAGASGNPGTDGI 370
Query: 380 PGS 388
PG+
Sbjct: 371 PGA 373
Score = 33.9 bits (76), Expect = 0.12
Identities = 40/139 (28%), Positives = 49/139 (35%), Gaps = 28/139 (20%)
Frame = +2
Query: 23 ETQLPGEPGLPYEAVPSILDPYREPRVP-SGGTAPADAPEGPPIS------------RGA 163
E PGE G P + P P P + G A P+GPP + RGA
Sbjct: 655 ERGFPGERGSP--GAQGLQGPRGLPGTPGTDGPKGAAGPDGPPGAQGPPGLQGMPGERGA 712
Query: 164 PGPAWP-----------PHGT*ARA*G*WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGG 310
G A P P G + G +TGP P G + G + P G
Sbjct: 713 AGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGAN---GEKGEAGPPGPSGS 769
Query: 311 TGQKA----PGITGRPWAA 355
TG + PG TG P A
Sbjct: 770 TGARGAPGEPGETGPPGPA 788
Score = 30.8 bits (68), Expect = 1.0
Identities = 31/87 (35%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Frame = +2
Query: 113 GTAPADAPEGPPISRGAPGPAWPPHGT*ARA*G*WVTGPQLPDGGGTGSHC*GPEARCPP 292
G A A P+GP GAPGP P VTGP+ G G A+ PP
Sbjct: 813 GDAGAPGPQGP---SGAPGPQGPT----------GVTGPK----GARG-------AQGPP 848
Query: 293 TAAG--GGTGQKA-PGITGRPWAAEDP 364
A G G G+ PG G P A P
Sbjct: 849 GATGFPGAAGRVGPPGANGNPGPAGPP 875
Score = 30.4 bits (67), Expect = 1.3
Identities = 34/101 (33%), Positives = 38/101 (37%), Gaps = 2/101 (1%)
Frame = +2
Query: 38 GEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*ARA*G*W 217
GE GL + L P PSG A P GP RG PGP P +
Sbjct: 1080 GERGLKGHRGFTGLQGLPGPPGPSGDQG-ASGPAGPSGPRGPPGPVGPSGKDGSNG---- 1134
Query: 218 VTGPQLPDGGGTGSHC*GPEARCPPTAAG--GGTGQKAPGI 334
+ GP P G S GP PP + G G G PGI
Sbjct: 1135 IPGPIGPPGPRGRSGETGPVG--PPGSPGPPGPPGPPGPGI 1173
Score = 30.0 bits (66), Expect = 1.7
Identities = 24/69 (34%), Positives = 25/69 (36%)
Frame = +2
Query: 140 GPPISRGAPGPAWPPHGT*ARA*G*WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQ 319
GPP + G PGPA PP GP DG GP R G G
Sbjct: 861 GPPGANGNPGPAGPP-------------GPAGKDGPKGVRGDSGPPGRAGDPGLEGPAG- 906
Query: 320 KAPGITGRP 346
APG G P
Sbjct: 907 -APGEKGEP 914
Score = 30.0 bits (66), Expect = 1.7
Identities = 36/115 (31%), Positives = 42/115 (36%), Gaps = 7/115 (6%)
Frame = +2
Query: 23 ETQLPGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*AR 202
ET G G P P+ + R R GG P GPP RGAPG P
Sbjct: 427 ETGPAGPQGAPG---PAGEEGKRGARGEPGGAGPI----GPPGERGAPGNRGFPGQD--- 476
Query: 203 A*G*WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQK-------APGITGRP 346
+ GP+ G G GP P A G G+ A G+TGRP
Sbjct: 477 ----GLAGPK----GAPGER--GPSGLAGPKGANGDPGRPGEPGLPGARGLTGRP 521
Score = 29.6 bits (65), Expect = 2.2
Identities = 27/85 (31%), Positives = 29/85 (34%), Gaps = 4/85 (4%)
Frame = +2
Query: 104 PSGGTAPADAPEGPPISRGAPGPAWPPHGT*ARA*G*WVTGPQLPDGGGTGSHC*GPEAR 283
PSG AP G RG PGP PP +TGP G GP R
Sbjct: 955 PSGEPGKQGAP-GASGDRGPPGPVGPP----------GLTGPAGEPGREGSPGADGPPGR 1003
Query: 284 CPPTAAGGGTGQK----APGITGRP 346
G G+ APG G P
Sbjct: 1004 DGAAGVKGDRGETGALGAPGAPGPP 1028
Score = 29.6 bits (65), Expect = 2.2
Identities = 37/115 (32%), Positives = 42/115 (36%), Gaps = 1/115 (0%)
Frame = +2
Query: 35 PGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*ARA*G* 214
PG G P P D + G T AP G P G+PGPA P
Sbjct: 989 PGREGSPGADGPPGRDGAAGVKGDRGETGALGAP-GAPGPPGSPGPAGP----------- 1036
Query: 215 WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQKAP-GITGRPWAAEDPNRGL 376
TG Q D G G+ GP P A G G + P G G + E RGL
Sbjct: 1037 --TGKQ-GDRGEAGAQ--GPMGPSGPAGARGIAGPQGPRGDKGE--SGEQGERGL 1084
>gi|41054950|ref|NP_955767.1| procollagen, type VIII, alpha 2;
endothelial collagen [Mus musculus]
Length = 699
Score = 40.8 bits (94), Expect = 0.001
Identities = 44/116 (37%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Frame = +2
Query: 14 LLPETQLPGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT 193
LL + PGE G P E P L P +P G+A GPP S+G GP PP
Sbjct: 331 LLGDRGEPGEDGKPGEQGPQGLGG--PPGLP--GSAGLPGRRGPPGSKGEVGPGGPPGVP 386
Query: 194 *ARA*G*WVTGPQLPDG--GGTGSHC*GPEARCPPTAAG--GGTGQKA-PGITGRP 346
+ G Q P+G G G P R P A G G TG K PG TGRP
Sbjct: 387 -------GIRGDQGPNGLAGKPGL----PGERGLPGAHGPPGPTGPKGEPGFTGRP 431
Score = 35.4 bits (80), Expect = 0.041
Identities = 40/124 (32%), Positives = 42/124 (33%), Gaps = 7/124 (5%)
Frame = +2
Query: 35 PGEPGLPYEAVPSILDPYREPRVPSGGTAP----ADAPEGPPISRGAPGPAWP--PHGT* 196
PG PGLP PSG T P A GPP RG PGP P G
Sbjct: 154 PGPPGLPG---------------PSGITVPGKPGAQGAPGPPGFRGEPGPQGEPGPRGDR 198
Query: 197 ARA*G*WVTGPQLPDGGGTGSHC*GPEARCP-PTAAGGGTGQKAPGITGRPWAAEDPNRG 373
V P LP G +A P P G G PG+ G P A D
Sbjct: 199 GLKGDNGVGQPGLPGAPG--------QAGAPGPPGLPGPAGLGKPGLDGIPGAPGDKGDS 250
Query: 374 LVPG 385
PG
Sbjct: 251 GPPG 254
Score = 35.0 bits (79), Expect = 0.053
Identities = 29/80 (36%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Frame = +2
Query: 23 ETQLPGEPGLPYEAVPSILDPYREPRVP-SGGTAPADAPEGPPISRGAPGPAWPPHGT*A 199
E LPG PG P P P VP S G P GPP GAPG A G
Sbjct: 481 EPGLPGPPGEGKVGEPGSAGPTGPPGVPGSPGLTGPPGPPGPPGPPGAPG-ALDETG--- 536
Query: 200 RA*G*WVTGPQLPDGGGTGS 259
+ G LP+GG G+
Sbjct: 537 ------IAGLHLPNGGVEGA 550
Score = 30.8 bits (68), Expect = 1.0
Identities = 35/121 (28%), Positives = 43/121 (35%), Gaps = 5/121 (4%)
Frame = +2
Query: 38 GEPGLP-YEAVPSILDPYREPRVPS---GGTAPADAPEGPPISRGAPGPAWPPHGT*ARA 205
G PG+P P + P P V G A P+GP ++G PG PP
Sbjct: 251 GPPGVPGSRGEPGAVGPKGPPGVDGVGIPGAAGVPGPQGPVGAKGEPGLRGPP------- 303
Query: 206 *G*WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQKA-PGITGRPWAAEDPNRGLVP 382
G P G G GP+ P A G G + PG G+P G P
Sbjct: 304 ------GLIGPVGYGMPGKP-GPKGDRGPVGAPGLLGDRGEPGEDGKPGEQGPQGLGGPP 356
Query: 383 G 385
G
Sbjct: 357 G 357
Score = 30.0 bits (66), Expect = 1.7
Identities = 21/51 (41%), Positives = 22/51 (43%)
Frame = +2
Query: 32 LPGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPP 184
L GEPG P + P R P P G P G P G PGPA PP
Sbjct: 71 LKGEPGPPGKPGP------RGPPGPPG--FPGKPGTGKPGVHGQPGPAGPP 113
Score = 29.6 bits (65), Expect = 2.2
Identities = 33/119 (27%), Positives = 41/119 (34%)
Frame = +2
Query: 32 LPGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*ARA*G 211
LPG+PGL PS + + P P G P+G P +G PG PP
Sbjct: 448 LPGQPGL---RGPSGIPGLQGPAGPIG-------PQGLPGLKGEPGLPGPP--------- 488
Query: 212 *WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQKAPGITGRPWAAEDPNRGLVPGS 388
G G PT G G +PG+TG P P PG+
Sbjct: 489 --------------GEGKVGEPGSAGPTGPPGVPG--SPGLTGPPGPPGPPGPPGAPGA 531
>gi|30410760|ref|NP_082542.2| procollagen, type XVI, alpha 1; [a]1
(XVI) collagen [Mus musculus]
Length = 1580
Score = 39.3 bits (90), Expect = 0.003
Identities = 39/120 (32%), Positives = 44/120 (36%), Gaps = 2/120 (1%)
Frame = +2
Query: 32 LPGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*ARA*G 211
LPG PG P P I P G D +G P RG PGPA PP
Sbjct: 1175 LPGSPGPP--GPPGIQGP--------AGLDGLDGKDGKPGLRGDPGPAGPP--------- 1215
Query: 212 *WVTGPQLPDGGGTGSH--C*GPEARCPPTAAGGGTGQKAPGITGRPWAAEDPNRGLVPG 385
+ GP P G H GP+ C G +G+ PG G P A R PG
Sbjct: 1216 -GLMGP--PGFKGKTGHPGLPGPKGDCGKPGPPGSSGR--PGAEGEPGAMGPQGRPGPPG 1270
Score = 37.0 bits (84), Expect = 0.014
Identities = 39/118 (33%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Frame = +2
Query: 35 PGEPGLP-YEAVPSILDPYREPRVP-SGGTAPADAP--EGPPISRGAPGPAWPPHGT*AR 202
PG+PGLP + P EP P +G P P +G P ++G PGP PP G+
Sbjct: 770 PGQPGLPGVQGPPGPKGTQGEPGPPGTGAEGPQGEPGTQGLPGTQGLPGPRGPP-GSAGE 828
Query: 203 A*G*WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQK-APGITGRPWAAEDPNRG 373
GP+ G G GP P G GQK + G G P P+RG
Sbjct: 829 KGAQGSPGPK----GAIGPM--GP----PGAGVSGPPGQKGSRGEKGEPGECSCPSRG 876
Score = 35.0 bits (79), Expect = 0.053
Identities = 39/126 (30%), Positives = 48/126 (38%), Gaps = 1/126 (0%)
Frame = +2
Query: 2 LTALLLPETQLPGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWP 181
L L + LPG+PG E P + +P P G P GP ++G PGP
Sbjct: 739 LQGALTDVSGLPGKPGPKGEPGPEGVGHPGKPGQP--GLPGVQGPPGPKGTQGEPGPP-- 794
Query: 182 PHGT*ARA*G*WVTGPQ-LPDGGGTGSHC*GPEARCPPTAAGGGTGQKAPGITGRPWAAE 358
GT A GPQ P G P R PP +AG Q +PG G
Sbjct: 795 --GTGAE-------GPQGEPGTQGLPGTQGLPGPRGPPGSAGEKGAQGSPGPKGAIGPMG 845
Query: 359 DPNRGL 376
P G+
Sbjct: 846 PPGAGV 851
Score = 32.0 bits (71), Expect = 0.45
Identities = 33/123 (26%), Positives = 38/123 (30%), Gaps = 6/123 (4%)
Frame = +2
Query: 35 PGEPGLPYEAVPSILDPYREPRVPSGGTAPAD--APEGPPISRGAPGPAWPPHGT*ARA* 208
PG+PG P P L + R G T P+ GPP S G PGP P
Sbjct: 1065 PGQPGYPGAMGPPGLPGIKGER---GYTGPSGEKGESGPPGSEGLPGPQGPA-------- 1113
Query: 209 G*WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTG----QKAPGITGRPWAAEDPNRGL 376
GP P + G G Q PG G P P +
Sbjct: 1114 --------------------GPRGEQGPQGSSGEKGDQGFQGQPGFPGPPGPPGFPGKAG 1153
Query: 377 VPG 385
PG
Sbjct: 1154 APG 1156
Score = 28.9 bits (63), Expect = 3.8
Identities = 39/134 (29%), Positives = 46/134 (34%), Gaps = 13/134 (9%)
Frame = +2
Query: 23 ETQLPGEPGLPYEAVPSILDPYREPRVPSG-----------GTAPADAPEGPPISRGAPG 169
E+ PG GLP P+ + P+ SG G P G P GAPG
Sbjct: 1097 ESGPPGSEGLPGPQGPAGPRGEQGPQGSSGEKGDQGFQGQPGFPGPPGPPGFPGKAGAPG 1156
Query: 170 PAWPPHGT*ARA*G*WVTGPQ-LPDGGGTGSHC*GPEARCPPTAAGGGTGQKA-PGITGR 343
P P A + GP LP G GP P G G+ PG+ G
Sbjct: 1157 PPGPQ----AEKGSEGIRGPSGLPGSPGPP----GPPGIQGPAGLDGLDGKDGKPGLRGD 1208
Query: 344 PWAAEDPNRGLVPG 385
P A P PG
Sbjct: 1209 PGPAGPPGLMGPPG 1222
>gi|38077494|ref|XP_193814.2| RIKEN cDNA 2310067L16 [Mus musculus]
Length = 1214
Score = 38.9 bits (89), Expect = 0.004
Identities = 41/114 (35%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
Frame = +2
Query: 35 PGEPG-LPYEAVPSILDPYREPRVPSG--GTAPADAPEGPPISRGAPGPAWPP--HGT*A 199
PGEPG L + P L P R P P G G A P G + GAPGPA PP G
Sbjct: 295 PGEPGALGPQGHPGELGP-RGPIGPPGAKGHDGAQGPPGAAGNPGAPGPAGPPGLSGPPG 353
Query: 200 RA*G*WVTGPQLPDGGGTGSHC*GPEARCPPTAAGGGTGQKAPGITGRPWAAED 361
V G DG G E P G G APG+ G P +D
Sbjct: 354 SLGSPGVRGAPGKDGERGEKGTAGEEGSPGPAGPRGDPG--APGLPGPPGKGKD 405
Score = 31.2 bits (69), Expect = 0.77
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Frame = +2
Query: 38 GEPGLPYEAVPSILDPYREPRVP----SGGTAPADAPEGPPISRGAPGPAWP 181
GE G P VP + P P P + G A P+GP G PGP P
Sbjct: 593 GEQGHP--GVPGFMGPPGNPGPPGADGNAGVAGPPGPQGPQGKEGPPGPQGP 642
Score = 30.8 bits (68), Expect = 1.0
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +2
Query: 35 PGEPGLP-YEAVPSILDPYREPRVPS-GGTAPADAPEGPPISRGAPGPAWPP 184
PG PG P + +P P EP P GG P GP RGA G P
Sbjct: 1034 PGPPGPPGKDGLPGRTGPMGEPGRPGQGGLEGPSGPMGPKGERGAKGDPGTP 1085
Score = 29.3 bits (64), Expect = 2.9
Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 1/103 (0%)
Frame = +2
Query: 65 VPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*ARA*G*WVTGPQLPDG 244
+P D + + G + A+ GPP +G G PP G + GP DG
Sbjct: 795 LPKEADGRQRGKTGEPGLSGAEGARGPPGFKGHTGDPGPP-GLRGEP---GIAGPSGRDG 850
Query: 245 GGTGSHC*GPEARCPPTAAGGGTGQKA-PGITGRPWAAEDPNR 370
G + P G G + PG +G P + DP R
Sbjct: 851 SP------GKDGDTGPAGPQGPRGTRGPPGSSGSPGSPGDPGR 887
Score = 29.3 bits (64), Expect = 2.9
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = +2
Query: 35 PGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWP--PHGT 193
PG PG +P + R GT +GPP G PGP P P GT
Sbjct: 156 PGTPGALGPQIPQYEEVNRVYHRQQMGTVLRTLDKGPPGPPGVPGPPGPGGPPGT 210
Score = 27.7 bits (60), Expect = 8.5
Identities = 25/69 (36%), Positives = 28/69 (40%)
Frame = +2
Query: 32 LPGEPGLPYEAVPSILDPYREPRVPSGGTAPADAPEGPPISRGAPGPAWPPHGT*ARA*G 211
LPG PG P ++ P E R D P GPP RG G PP GT
Sbjct: 122 LPGPPG-----APGLIGP--EGR---------DGPPGPPGLRGKKGEMGPP-GTPG---- 160
Query: 212 *WVTGPQLP 238
GPQ+P
Sbjct: 161 --ALGPQIP 167
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Apr 12, 2004 5:36 AM
Number of letters in database: 11,906,519
Number of sequences in database: 26,199
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 11,906,519
effective HSP length: 98
effective length of database: 9,339,017
effective search space used: 1690362077
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)