Search to RefSeq (Human) database
Query= 20040204C-003594 (20040204C-003594) 20040204C-003594
(842 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
27,437 sequences; 13,743,509 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|42655636|ref|XP_052561.5| KIAA1337 protein [Homo sapiens] 30 1.5
Alignment gi|13376611|ref|NP_079345.1| hypothetical protein FLJ14299 [Homo... 30 1.5
Alignment gi|41152104|ref|NP_060257.3| chromosome 10 open reading frame 26... 29 3.4
Alignment gi|21389545|ref|NP_653261.1| sterile alpha motif domain containi... 28 7.6
Alignment gi|21040326|ref|NP_620305.1| SON DNA-binding protein isoform F; ... 28 7.6
Alignment gi|21040322|ref|NP_620304.1| SON DNA-binding protein isoform C; ... 28 7.6
Alignment gi|21040320|ref|NP_620303.1| SON DNA-binding protein isoform A; ... 28 7.6
Alignment gi|21040318|ref|NP_478063.2| SON DNA-binding protein isoform E; ... 28 7.6
Alignment gi|21040314|ref|NP_115571.1| SON DNA-binding protein isoform B; ... 28 7.6
Alignment gi|16357503|ref|NP_378667.1| type IV alpha 6 collagen isoform B ... 28 7.6
>gi|42655636|ref|XP_052561.5| KIAA1337 protein [Homo sapiens]
Length = 1502
Score = 30.4 bits (67), Expect = 1.5
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +2
Query: 110 SVIVDSGF-LLPESGCLSGLSSRSHLAFLLHVLCQAASSSSTLVKPSDRRLLQPCHFLYG 286
SV+ DS F L E G HL L C+A +++S LVKP + L + +
Sbjct: 1146 SVVYDSSFDLFKEIG---------HLCHL----CKAIAANSELVKPGGAQCLPSGYSISS 1192
Query: 287 AQAPSHPSCSLVPD-HPLPG 343
HP C +P+ + LPG
Sbjct: 1193 FLQMLHPECKELPEPNLLPG 1212
>gi|13376611|ref|NP_079345.1| hypothetical protein FLJ14299 [Homo
sapiens]
Length = 590
Score = 30.4 bits (67), Expect = 1.5
Identities = 19/62 (30%), Positives = 25/62 (40%)
Frame = +2
Query: 152 CLSGLSSRSHLAFLLHVLCQAASSSSTLVKPSDRRLLQPCHFLYGAQAPSHPSCSLVPDH 331
CL G SHL C A + +K L+ P H L A S + + +P H
Sbjct: 381 CLGGYHGASHLGGSSCSTCSAHDPAGPSLKAGGYPLVYPGHPLQPAALSSSAAQAALPGH 440
Query: 332 PL 337
PL
Sbjct: 441 PL 442
>gi|41152104|ref|NP_060257.3| chromosome 10 open reading frame 26
[Homo sapiens]
Length = 342
Score = 29.3 bits (64), Expect = 3.4
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 289 SSPLTPVMLTSTRSSSARECHPS*LPRDSVSTKEP 393
SSPL+ +STR S + PS LP D +TK P
Sbjct: 158 SSPLSEPSRSSTRPPSIADPDPSDLPVDRAATKAP 192
>gi|21389545|ref|NP_653261.1| sterile alpha motif domain containing
8 [Homo sapiens]
Length = 326
Score = 28.1 bits (61), Expect = 7.6
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -3
Query: 684 TTLPVPSPLLKCVYTGFGFSSIMEKLHRA 598
T+L VP L+C TG + S+ EKLHRA
Sbjct: 250 TSLSVPGQHLQC--TGKIYGSVWEKLHRA 276
>gi|21040326|ref|NP_620305.1| SON DNA-binding protein isoform F;
NRE-binding protein; chromosome 21 open reading frame 50;
SON protein; negative regulatory element-binding protein;
Bax antagonist selected in Saccharomyces 1 [Homo sapiens]
Length = 2426
Score = 28.1 bits (61), Expect = 7.6
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = -3
Query: 279 RKWQGCSSLRSEGFTRVDEEEAA*HRTCKRKAKCDRELRPERHPDSGNRKPESTMTETPA 100
R+ S +S G V +E+ R+ K ++K RE + +R NRK + TP+
Sbjct: 1870 RRRSSRSRSKSRGRRSVSKEKRK--RSPKHRSK-SRERKRKRSSSRDNRKTVRARSRTPS 1926
Query: 99 RMSRS 85
R SRS
Sbjct: 1927 RRSRS 1931
>gi|21040322|ref|NP_620304.1| SON DNA-binding protein isoform C;
NRE-binding protein; chromosome 21 open reading frame 50;
SON protein; negative regulatory element-binding protein;
Bax antagonist selected in Saccharomyces 1 [Homo sapiens]
Length = 2325
Score = 28.1 bits (61), Expect = 7.6
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = -3
Query: 279 RKWQGCSSLRSEGFTRVDEEEAA*HRTCKRKAKCDRELRPERHPDSGNRKPESTMTETPA 100
R+ S +S G V +E+ R+ K ++K RE + +R NRK + TP+
Sbjct: 1870 RRRSSRSRSKSRGRRSVSKEKRK--RSPKHRSK-SRERKRKRSSSRDNRKTVRARSRTPS 1926
Query: 99 RMSRS 85
R SRS
Sbjct: 1927 RRSRS 1931
>gi|21040320|ref|NP_620303.1| SON DNA-binding protein isoform A;
NRE-binding protein; chromosome 21 open reading frame 50;
SON protein; negative regulatory element-binding protein;
Bax antagonist selected in Saccharomyces 1 [Homo sapiens]
Length = 2140
Score = 28.1 bits (61), Expect = 7.6
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = -3
Query: 279 RKWQGCSSLRSEGFTRVDEEEAA*HRTCKRKAKCDRELRPERHPDSGNRKPESTMTETPA 100
R+ S +S G V +E+ R+ K ++K RE + +R NRK + TP+
Sbjct: 1551 RRRSSRSRSKSRGRRSVSKEKRK--RSPKHRSK-SRERKRKRSSSRDNRKTVRARSRTPS 1607
Query: 99 RMSRS 85
R SRS
Sbjct: 1608 RRSRS 1612
>gi|21040318|ref|NP_478063.2| SON DNA-binding protein isoform E;
NRE-binding protein; chromosome 21 open reading frame 50;
SON protein; negative regulatory element-binding protein;
Bax antagonist selected in Saccharomyces 1 [Homo sapiens]
Length = 2108
Score = 28.1 bits (61), Expect = 7.6
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = -3
Query: 279 RKWQGCSSLRSEGFTRVDEEEAA*HRTCKRKAKCDRELRPERHPDSGNRKPESTMTETPA 100
R+ S +S G V +E+ R+ K ++K RE + +R NRK + TP+
Sbjct: 1870 RRRSSRSRSKSRGRRSVSKEKRK--RSPKHRSK-SRERKRKRSSSRDNRKTVRARSRTPS 1926
Query: 99 RMSRS 85
R SRS
Sbjct: 1927 RRSRS 1931
>gi|21040314|ref|NP_115571.1| SON DNA-binding protein isoform B;
NRE-binding protein; chromosome 21 open reading frame 50;
SON protein; negative regulatory element-binding protein;
Bax antagonist selected in Saccharomyces 1 [Homo sapiens]
Length = 2303
Score = 28.1 bits (61), Expect = 7.6
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = -3
Query: 279 RKWQGCSSLRSEGFTRVDEEEAA*HRTCKRKAKCDRELRPERHPDSGNRKPESTMTETPA 100
R+ S +S G V +E+ R+ K ++K RE + +R NRK + TP+
Sbjct: 1870 RRRSSRSRSKSRGRRSVSKEKRK--RSPKHRSK-SRERKRKRSSSRDNRKTVRARSRTPS 1926
Query: 99 RMSRS 85
R SRS
Sbjct: 1927 RRSRS 1931
>gi|16357503|ref|NP_378667.1| type IV alpha 6 collagen isoform B
precursor; collagen IV, alpha-6 polypeptide; collagen of
basement membrane, alpha-6 [Homo sapiens]
Length = 1690
Score = 28.1 bits (61), Expect = 7.6
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = -3
Query: 426 GRGFSRRQGLQRLFGGDGIPGQ--LTGVALPG----RG*SGTSEHDGCEG 295
G+GF +GL L G G PG L G LPG RG G DG G
Sbjct: 593 GQGFPGEKGLPGLPGEKGHPGPPGLPGNGLPGLPGPRGLPGDKGKDGLPG 642
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Apr 12, 2004 5:34 AM
Number of letters in database: 13,743,509
Number of sequences in database: 27,437
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 13,743,509
effective HSP length: 100
effective length of database: 10,999,809
effective search space used: 1979965620
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeq (Mouse) database
Query= 20040204C-003594 (20040204C-003594) 20040204C-003594
(842 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
26,199 sequences; 11,906,519 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|38089165|ref|XP_357868.1| similar to hypothetical protein FLJ... 33 0.15
Alignment gi|20900788|ref|XP_140084.1| similar to gonadotropin inducible o... 33 0.26
Alignment gi|19527012|ref|NP_598558.1| RIKEN cDNA 4833439L19 [Mus musculus] 30 2.2
Alignment gi|20895476|ref|XP_147750.1| similar to RIKEN cDNA 4833439L19 [M... 30 2.2
Alignment gi|45269152|ref|NP_032398.3| interleukin 7 receptor precursor; I... 29 2.9
Alignment gi|30089697|ref|NP_659148.2| thrombospondin repeat containing 1;... 29 2.9
Alignment gi|38087494|ref|XP_357781.1| RIKEN cDNA 6330567E21 [Mus musculus] 29 2.9
Alignment gi|28523341|ref|XP_145240.4| RIKEN cDNA 9530020G05 [Mus musculus] 29 2.9
Alignment gi|21312088|ref|NP_082860.1| MARVEL (membrane-associating) domai... 29 3.8
Alignment gi|40254518|ref|NP_079883.2| RIKEN cDNA 2500002L14; EST C77350 [... 29 3.8
>gi|38089165|ref|XP_357868.1| similar to hypothetical protein
FLJ14299 [Mus musculus]
Length = 431
Score = 33.5 bits (75), Expect = 0.15
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = +2
Query: 152 CLSGLSSRSHLAFLLHVLCQAASSSSTLVKPSDRRLLQPCHFLYGAQAPSHPSCSLVPDH 331
CL G S SHL C A + +K S L+ P H L A S + + +P H
Sbjct: 312 CLGGYHSASHLGGSSCSTCSAHDPTGPSLKASGYPLVYPGHPLQPAALSSSAAQAALPGH 371
Query: 332 PL 337
PL
Sbjct: 372 PL 373
>gi|20900788|ref|XP_140084.1| similar to gonadotropin inducible
ovarian transcription factor 1 [Mus musculus]
Length = 700
Score = 32.7 bits (73), Expect = 0.26
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 327 IILCPGVPPQLTAQGFRLHQRASANPASWKNLF-PIGNP*MLRCIVDIIYI 476
++LCPG+PP A G AS+ W+ + + NP LRC++ ++++
Sbjct: 75 VVLCPGLPP---AAGSCEESGASSVSTPWEGRYADMENPSSLRCLLQVLHL 122
>gi|19527012|ref|NP_598558.1| RIKEN cDNA 4833439L19 [Mus musculus]
Length = 303
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 195 KRKAKCDRELRPERHPDSGNRKPESTMTETPARMSRSW 82
K K + + E+HP S P ST +P + SR W
Sbjct: 154 KLKLQSGETAKEEKHPASAQSTPSSTPHASPKQKSRGW 191
>gi|20895476|ref|XP_147750.1| similar to RIKEN cDNA 4833439L19 [Mus
musculus]
Length = 303
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 195 KRKAKCDRELRPERHPDSGNRKPESTMTETPARMSRSW 82
K K + + E+HP S P ST +P + SR W
Sbjct: 154 KLKLQSGETAKEEKHPASAQSTPSSTPHASPKQKSRGW 191
>gi|45269152|ref|NP_032398.3| interleukin 7 receptor precursor; IL-7
receptor alpha chain [Mus musculus]
Length = 459
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 653 SVFIQGLAFHLLWKNYIVPTALQS-PKHSKSSTDLAPKQK 537
SVF+ + H+LWK I P S P H K+ L K K
Sbjct: 252 SVFLLVILAHVLWKKRIKPVVWPSLPDHKKTLEQLCKKPK 291
>gi|30089697|ref|NP_659148.2| thrombospondin repeat containing 1;
thrombospondin repeat protein 1 [Mus musculus]
Length = 1036
Score = 29.3 bits (64), Expect = 2.9
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = -3
Query: 300 EGA*AP*RKWQGCSSLRSEGFTRVDEEEAA*HRTCKRKAKCDRELRPERHPDSGNRKPES 121
EG P +W CS G R RTC+ RP RHP++ + +
Sbjct: 43 EGLWGPWGRWASCSQPCGVGVQRRS-------RTCELHPALPLPPRPPRHPEAHRPRGQG 95
Query: 120 TMTETP 103
+ +TP
Sbjct: 96 SRPQTP 101
>gi|38087494|ref|XP_357781.1| RIKEN cDNA 6330567E21 [Mus musculus]
Length = 1180
Score = 29.3 bits (64), Expect = 2.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 174 RELRPERHPDSGNRKPESTMTETPARMSRS 85
+E++P H DS +KPEST +P+ S
Sbjct: 833 KEVKPPSHSDSLTKKPESTTKSSPSSKGTS 862
>gi|28523341|ref|XP_145240.4| RIKEN cDNA 9530020G05 [Mus musculus]
Length = 748
Score = 29.3 bits (64), Expect = 2.9
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = -1
Query: 290 EPRKGSGKAVAASGQKVSQEWTKKKLLDTGHARGKLSVIESSDRRDTLTQVTESQSRR*Q 111
+ +K + A G +Q KK + +GK SV + D + L+ ++
Sbjct: 269 QSKKSPSRLSPAQGPPQAQSSAKKDSFSSQATKGKDSVPGAKDGKSLLSGPVPGEASWTH 328
Query: 110 KHQPECQDHGK 78
+ Q QDHGK
Sbjct: 329 QRQRRLQDHGK 339
>gi|21312088|ref|NP_082860.1| MARVEL (membrane-associating) domain
containing 3 [Mus musculus]
Length = 376
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 204 RTCKRKAKCDRELRPERHPDSGNRKPESTMTETPARMSRS 85
R R+ + DR+ R +RH D+G+R E E +R SR+
Sbjct: 55 RRAGREQRTDRDQRQDRHRDAGHRASEQRALE-KSRQSRA 93
>gi|40254518|ref|NP_079883.2| RIKEN cDNA 2500002L14; EST C77350 [Mus
musculus]
Length = 385
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 204 RTCKRKAKCDRELRPERHPDSGNRKPESTMTETPARMSRS 85
R R+ + DR+ R +RH D+G+R E E +R SR+
Sbjct: 55 RRAGREQRTDRDQRQDRHRDAGHRASEQRALE-KSRQSRA 93
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Apr 12, 2004 5:36 AM
Number of letters in database: 11,906,519
Number of sequences in database: 26,199
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 11,906,519
effective HSP length: 99
effective length of database: 9,312,818
effective search space used: 1685620058
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)